BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647051.2.1
(627 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU089819.1|AU089819 AU089819 Rice green shoot Oryza sati... 117 7e-024
gb|CB656535.1|CB656535 OSJNEc10P22.f OSJNEc Oryza sativa (j... 117 7e-024
gb|CB656536.1|CB656536 OSJNEc10P22.r OSJNEc Oryza sativa (j... 117 7e-024
gb|CB679371.1|CB679371 OSJNEf02M17.f OSJNEf Oryza sativa (j... 117 7e-024
gb|CB679372.1|CB679372 OSJNEf02M17.r OSJNEf Oryza sativa (j... 117 7e-024
dbj|AK061390.1| Oryza sativa (japonica cultivar-group) cDNA... 117 7e-024
dbj|AK104791.1| Oryza sativa (japonica cultivar-group) cDNA... 117 7e-024
ref|XM_470129.1| Oryza sativa (japonica cultivar-group), mRNA 117 7e-024
gb|AF474922.1| Oryza sativa chalcone isomerase (Cfi) gene, ... 78 6e-012
gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 gen... 78 6e-012
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 78 6e-012
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 78 6e-012
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
gb|D49230.1|D49230 RICS16359A Rice green shoot Oryza sativa... 76 3e-011
gb|AACV01008175.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|AACV01024726.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
gb|CH401275.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AK110673.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.089
dbj|AP003283.1| Oryza sativa (japonica cultivar-group) chro... 42 0.35
emb|AL713928.3|CNS07YP5 Oryza sativa chromosome 12, . BAC O... 42 0.35
emb|AL844876.4|CNS08CAZ Oryza sativa chromosome 12, . BAC O... 42 0.35
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 42 0.35
dbj|AP003345.3| Oryza sativa (japonica cultivar-group) geno... 42 0.35
dbj|AP003406.3| Oryza sativa (japonica cultivar-group) geno... 42 0.35
gb|AACV01010641.1| Oryza sativa (japonica cultivar-group) c... 42 0.35
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.35
ref|XM_474276.1| Oryza sativa (japonica cultivar-group), p... 42 0.35
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 42 0.35
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 42 0.35
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromoso... 42 0.35
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.35
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.35
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.35
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
>gb|AU089819.1|AU089819 AU089819 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16470, mRNA sequence
Length = 466
Score = 117 bits (59), Expect = 7e-024
Identities = 153/183 (83%), Gaps = 6/183 (3%)
Strand = Plus / Plus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctcc 115
|||||||| |||||||||||||| ||||| | |||| |||||||||||||| ||||||
Sbjct: 41 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgtcgcgttctcc 100
Query: 116 aaggactcgtcggtgccggcggcc-----ggcggc-gtggcgatcgagaacaagcgcctc 169
||||||||||||||||| | || | |||||| | |||||||||||||| | |||
Sbjct: 101 aaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgagaacagggcgctc 160
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
|||||||| |||||||| ||||||||||| |||| ||| || |||||||| ||||||| |
Sbjct: 161 tgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccggcggcgaagcgg 220
Query: 230 agc 232
|||
Sbjct: 221 agc 223
>gb|CB656535.1|CB656535 OSJNEc10P22.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10P22 5', mRNA sequence
Length = 806
Score = 117 bits (59), Expect = 7e-024
Identities = 153/183 (83%), Gaps = 6/183 (3%)
Strand = Plus / Plus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctcc 115
|||||||| |||||||||||||| ||||| | |||| |||||||||||||| ||||||
Sbjct: 450 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgtcgcgttctcc 509
Query: 116 aaggactcgtcggtgccggcggcc-----ggcggc-gtggcgatcgagaacaagcgcctc 169
||||||||||||||||| | || | |||||| | |||||||||||||| | |||
Sbjct: 510 aaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgagaacagggcgctc 569
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
|||||||| |||||||| ||||||||||| |||| ||| || |||||||| ||||||| |
Sbjct: 570 tgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccggcggcgaagcgg 629
Query: 230 agc 232
|||
Sbjct: 630 agc 632
>gb|CB656536.1|CB656536 OSJNEc10P22.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10P22 3', mRNA sequence
Length = 789
Score = 117 bits (59), Expect = 7e-024
Identities = 153/183 (83%), Gaps = 6/183 (3%)
Strand = Plus / Minus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctcc 115
|||||||| |||||||||||||| ||||| | |||| |||||||||||||| ||||||
Sbjct: 442 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgtcgcgttctcc 383
Query: 116 aaggactcgtcggtgccggcggcc-----ggcggc-gtggcgatcgagaacaagcgcctc 169
||||||||||||||||| | || | |||||| | |||||||||||||| | |||
Sbjct: 382 aaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgagaacagggcgctc 323
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
|||||||| |||||||| ||||||||||| |||| ||| || |||||||| ||||||| |
Sbjct: 322 tgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccggcggcgaagcgg 263
Query: 230 agc 232
|||
Sbjct: 262 agc 260
>gb|CB679371.1|CB679371 OSJNEf02M17.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02M17 5', mRNA sequence
Length = 782
Score = 117 bits (59), Expect = 7e-024
Identities = 153/183 (83%), Gaps = 6/183 (3%)
Strand = Plus / Plus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctcc 115
|||||||| |||||||||||||| ||||| | |||| |||||||||||||| ||||||
Sbjct: 449 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgtcgcgttctcc 508
Query: 116 aaggactcgtcggtgccggcggcc-----ggcggc-gtggcgatcgagaacaagcgcctc 169
||||||||||||||||| | || | |||||| | |||||||||||||| | |||
Sbjct: 509 aaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgagaacagggcgctc 568
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
|||||||| |||||||| ||||||||||| |||| ||| || |||||||| ||||||| |
Sbjct: 569 tgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccggcggcgaagcgg 628
Query: 230 agc 232
|||
Sbjct: 629 agc 631
>gb|CB679372.1|CB679372 OSJNEf02M17.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02M17 3', mRNA sequence
Length = 737
Score = 117 bits (59), Expect = 7e-024
Identities = 153/183 (83%), Gaps = 6/183 (3%)
Strand = Plus / Minus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctcc 115
|||||||| |||||||||||||| ||||| | |||| |||||||||||||| ||||||
Sbjct: 390 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgtcgcgttctcc 331
Query: 116 aaggactcgtcggtgccggcggcc-----ggcggc-gtggcgatcgagaacaagcgcctc 169
||||||||||||||||| | || | |||||| | |||||||||||||| | |||
Sbjct: 330 aaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgagaacagggcgctc 271
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
|||||||| |||||||| ||||||||||| |||| ||| || |||||||| ||||||| |
Sbjct: 270 tgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccggcggcgaagcgg 211
Query: 230 agc 232
|||
Sbjct: 210 agc 208
>dbj|AK061390.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-C05, full
insert sequence
Length = 877
Score = 117 bits (59), Expect = 7e-024
Identities = 153/183 (83%), Gaps = 6/183 (3%)
Strand = Plus / Plus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctcc 115
|||||||| |||||||||||||| ||||| | |||| |||||||||||||| ||||||
Sbjct: 493 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgtcgcgttctcc 552
Query: 116 aaggactcgtcggtgccggcggcc-----ggcggc-gtggcgatcgagaacaagcgcctc 169
||||||||||||||||| | || | |||||| | |||||||||||||| | |||
Sbjct: 553 aaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgagaacagggcgctc 612
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
|||||||| |||||||| ||||||||||| |||| ||| || |||||||| ||||||| |
Sbjct: 613 tgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccggcggcgaagcgg 672
Query: 230 agc 232
|||
Sbjct: 673 agc 675
>dbj|AK104791.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-F07, full
insert sequence
Length = 834
Score = 117 bits (59), Expect = 7e-024
Identities = 153/183 (83%), Gaps = 6/183 (3%)
Strand = Plus / Plus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctcc 115
|||||||| |||||||||||||| ||||| | |||| |||||||||||||| ||||||
Sbjct: 463 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgtcgcgttctcc 522
Query: 116 aaggactcgtcggtgccggcggcc-----ggcggc-gtggcgatcgagaacaagcgcctc 169
||||||||||||||||| | || | |||||| | |||||||||||||| | |||
Sbjct: 523 aaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgagaacagggcgctc 582
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
|||||||| |||||||| ||||||||||| |||| ||| || |||||||| ||||||| |
Sbjct: 583 tgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccggcggcgaagcgg 642
Query: 230 agc 232
|||
Sbjct: 643 agc 645
>ref|XM_470129.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 916
Score = 117 bits (59), Expect = 7e-024
Identities = 153/183 (83%), Gaps = 6/183 (3%)
Strand = Plus / Plus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctcc 115
|||||||| |||||||||||||| ||||| | |||| |||||||||||||| ||||||
Sbjct: 519 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgtcgcgttctcc 578
Query: 116 aaggactcgtcggtgccggcggcc-----ggcggc-gtggcgatcgagaacaagcgcctc 169
||||||||||||||||| | || | |||||| | |||||||||||||| | |||
Sbjct: 579 aaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgagaacagggcgctc 638
Query: 170 tgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctg 229
|||||||| |||||||| ||||||||||| |||| ||| || |||||||| ||||||| |
Sbjct: 639 tgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccggcggcgaagcgg 698
Query: 230 agc 232
|||
Sbjct: 699 agc 701
>gb|AF474922.1| Oryza sativa chalcone isomerase (Cfi) gene, complete cds
Length = 2479
Score = 77.8 bits (39), Expect = 6e-012
Identities = 112/135 (82%), Gaps = 6/135 (4%)
Strand = Plus / Plus
Query: 104 gtcgccttctccaaggactcgtcggtgccggcggccg-----gcggcgt-ggcgatcgag 157
||||| ||||||||||||||||||||||| | || || |||||| ||||||||||
Sbjct: 1748 gtcgcgttctccaaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgag 1807
Query: 158 aacaagcgcctctgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccg 217
|||| | ||||||||||| |||||||| ||||||||||| |||| ||| || ||||||
Sbjct: 1808 aacagggcgctctgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccg 1867
Query: 218 gccgcgaagctgagc 232
|| ||||||| ||||
Sbjct: 1868 gcggcgaagcggagc 1882
Score = 44.1 bits (22), Expect = 0.089
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgt 105
|||||||| |||||||||||||| ||||| | |||| |||||||||||
Sbjct: 1620 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgt 1669
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
sequence
Length = 163828
Score = 77.8 bits (39), Expect = 6e-012
Identities = 112/135 (82%), Gaps = 6/135 (4%)
Strand = Plus / Minus
Query: 104 gtcgccttctccaaggactcgtcggtgccggcggccg-----gcggcgt-ggcgatcgag 157
||||| ||||||||||||||||||||||| | || || |||||| ||||||||||
Sbjct: 54770 gtcgcgttctccaaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgag 54711
Query: 158 aacaagcgcctctgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccg 217
|||| | ||||||||||| |||||||| ||||||||||| |||| ||| || ||||||
Sbjct: 54710 aacagggcgctctgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccg 54651
Query: 218 gccgcgaagctgagc 232
|| ||||||| ||||
Sbjct: 54650 gcggcgaagcggagc 54636
Score = 44.1 bits (22), Expect = 0.089
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgt 105
|||||||| |||||||||||||| ||||| | |||| |||||||||||
Sbjct: 54899 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgt 54850
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 77.8 bits (39), Expect = 6e-012
Identities = 112/135 (82%), Gaps = 6/135 (4%)
Strand = Plus / Minus
Query: 104 gtcgccttctccaaggactcgtcggtgccggcggccg-----gcggcgt-ggcgatcgag 157
||||| ||||||||||||||||||||||| | || || |||||| ||||||||||
Sbjct: 747365 gtcgcgttctccaaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgag 747306
Query: 158 aacaagcgcctctgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccg 217
|||| | ||||||||||| |||||||| ||||||||||| |||| ||| || ||||||
Sbjct: 747305 aacagggcgctctgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccg 747246
Query: 218 gccgcgaagctgagc 232
|| ||||||| ||||
Sbjct: 747245 gcggcgaagcggagc 747231
Score = 44.1 bits (22), Expect = 0.089
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgt 105
|||||||| |||||||||||||| ||||| | |||| |||||||||||
Sbjct: 747494 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgt 747445
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 77.8 bits (39), Expect = 6e-012
Identities = 112/135 (82%), Gaps = 6/135 (4%)
Strand = Plus / Minus
Query: 104 gtcgccttctccaaggactcgtcggtgccggcggccg-----gcggcgt-ggcgatcgag 157
||||| ||||||||||||||||||||||| | || || |||||| ||||||||||
Sbjct: 34181430 gtcgcgttctccaaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgag 34181371
Query: 158 aacaagcgcctctgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccg 217
|||| | ||||||||||| |||||||| ||||||||||| |||| ||| || ||||||
Sbjct: 34181370 aacagggcgctctgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccg 34181311
Query: 218 gccgcgaagctgagc 232
|| ||||||| ||||
Sbjct: 34181310 gcggcgaagcggagc 34181296
Score = 44.1 bits (22), Expect = 0.089
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgt 105
|||||||| |||||||||||||| ||||| | |||| |||||||||||
Sbjct: 34181559 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgt 34181510
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 77.8 bits (39), Expect = 6e-012
Identities = 112/135 (82%), Gaps = 6/135 (4%)
Strand = Plus / Minus
Query: 104 gtcgccttctccaaggactcgtcggtgccggcggccg-----gcggcgt-ggcgatcgag 157
||||| ||||||||||||||||||||||| | || || |||||| ||||||||||
Sbjct: 34090958 gtcgcgttctccaaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgag 34090899
Query: 158 aacaagcgcctctgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccg 217
|||| | ||||||||||| |||||||| ||||||||||| |||| ||| || ||||||
Sbjct: 34090898 aacagggcgctctgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccg 34090839
Query: 218 gccgcgaagctgagc 232
|| ||||||| ||||
Sbjct: 34090838 gcggcgaagcggagc 34090824
Score = 44.1 bits (22), Expect = 0.089
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgt 105
|||||||| |||||||||||||| ||||| | |||| |||||||||||
Sbjct: 34091087 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgt 34091038
>gb|D49230.1|D49230 RICS16359A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 400
Score = 75.8 bits (38), Expect = 3e-011
Identities = 97/114 (85%), Gaps = 6/114 (5%)
Strand = Plus / Minus
Query: 95 gtcctcaccgtcgccttctccaaggactcgtcggtgccggcggcc----ggcggc-gtgg 149
||||| |||||||| ||||||||||||||||||||||| | || | |||||| | ||
Sbjct: 351 gtcctnaccgtcgcgttctccaaggactcgtcggtgccagagggcccgtggcggcggcgg 292
Query: 150 cgatcgagaacaagcgcctctgcgaggccgtgctggagtccatcatcggggagc 203
||||||||||| || || |||||||||| |||||||| ||||||||||| ||||
Sbjct: 291 cgatcgagaac-agggcgtctgcgaggcggtgctggattccatcatcggcgagc 239
>gb|AACV01008175.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008175,
whole genome shotgun sequence
Length = 5641
Score = 73.8 bits (37), Expect = 1e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 148 ggcgatcgagaacaagcgcctctgcgaggccgtgctggagtccatcatcggggagcgcgg 207
|||||||||||||| | ||||||||||| |||||||| ||||||||||| |||| |||
Sbjct: 416 ggcgatcgagaacagggcgctctgcgaggcggtgctggattccatcatcggcgagcacgg 357
Query: 208 cgtgtcgccggccgcgaagctgagc 232
|| |||||||| ||||||| ||||
Sbjct: 356 ggtctcgccggcggcgaagcggagc 332
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 104 gtcgccttctccaaggactcgtcggtgcc 132
||||| |||||||||||||||||||||||
Sbjct: 467 gtcgcgttctccaaggactcgtcggtgcc 439
Score = 44.1 bits (22), Expect = 0.089
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgt 105
|||||||| |||||||||||||| ||||| | |||| |||||||||||
Sbjct: 596 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgt 547
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 73.8 bits (37), Expect = 1e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 148 ggcgatcgagaacaagcgcctctgcgaggccgtgctggagtccatcatcggggagcgcgg 207
|||||||||||||| | ||||||||||| |||||||| ||||||||||| |||| |||
Sbjct: 7770135 ggcgatcgagaacagggcgctctgcgaggcggtgctggattccatcatcggcgagcacgg 7770076
Query: 208 cgtgtcgccggccgcgaagctgagc 232
|| |||||||| ||||||| ||||
Sbjct: 7770075 ggtctcgccggcggcgaagcggagc 7770051
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 104 gtcgccttctccaaggactcgtcggtgcc 132
||||| |||||||||||||||||||||||
Sbjct: 7770186 gtcgcgttctccaaggactcgtcggtgcc 7770158
Score = 44.1 bits (22), Expect = 0.089
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgt 105
|||||||| |||||||||||||| ||||| | |||| |||||||||||
Sbjct: 7770315 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgt 7770266
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 73.8 bits (37), Expect = 1e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 148 ggcgatcgagaacaagcgcctctgcgaggccgtgctggagtccatcatcggggagcgcgg 207
|||||||||||||| | ||||||||||| |||||||| ||||||||||| |||| |||
Sbjct: 35036298 ggcgatcgagaacagggcgctctgcgaggcggtgctggattccatcatcggcgagcacgg 35036239
Query: 208 cgtgtcgccggccgcgaagctgagc 232
|| |||||||| ||||||| ||||
Sbjct: 35036238 ggtctcgccggcggcgaagcggagc 35036214
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 104 gtcgccttctccaaggactcgtcggtgcc 132
||||| |||||||||||||||||||||||
Sbjct: 35036349 gtcgcgttctccaaggactcgtcggtgcc 35036321
Score = 44.1 bits (22), Expect = 0.089
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 56 ccgggcgcctccatcctcttcacgcactcgaccgccggagtcctcaccgt 105
|||||||| |||||||||||||| ||||| | |||| |||||||||||
Sbjct: 35036478 ccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgt 35036429
>gb|AACV01024726.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024726, whole
genome shotgun sequence
Length = 20992
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 171 gcgaggccgtgctggagtccatcatcggggagc 203
|||||||||||||||| ||||||||||| ||||
Sbjct: 12858 gcgaggccgtgctggattccatcatcggcgagc 12826
>gb|CH401275.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000112
genomic scaffold, whole genome shotgun sequence
Length = 845600
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 171 gcgaggccgtgctggagtccatcatcggggagc 203
|||||||||||||||| ||||||||||| ||||
Sbjct: 659789 gcgaggccgtgctggattccatcatcggcgagc 659757
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 171 gcgaggccgtgctggagtccatcatcggggagc 203
|||||||||||||||| ||||||||||| ||||
Sbjct: 12692848 gcgaggccgtgctggattccatcatcggcgagc 12692816
>dbj|AK110673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-G05, full
insert sequence
Length = 1110
Score = 44.1 bits (22), Expect = 0.089
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 259 cgccaaggagaccgccgcgcccgccg 284
||||||||||||||||| ||||||||
Sbjct: 708 cgccaaggagaccgccgagcccgccg 733
>dbj|AP003283.1| Oryza sativa (japonica cultivar-group) chromosome 1 clone P0670C02, ***
SEQUENCING IN PROGRESS ***
Length = 163958
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 130 gccggcggccggcggcgtggc 150
|||||||||||||||||||||
Sbjct: 65012 gccggcggccggcggcgtggc 64992
>emb|AL713928.3|CNS07YP5 Oryza sativa chromosome 12, . BAC OSJNBa0036B12 of library OSJNBa
from chromosome 12 of cultivar Nipponbare of ssp.
japonica of Oryza sativa (rice), complete sequence
Length = 151541
Score = 42.1 bits (21), Expect = 0.35
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 171 gcgaggccgtgctggagtccatcatcggggagc 203
||||||| |||||||| ||||||||||| ||||
Sbjct: 3961 gcgaggcggtgctggattccatcatcggcgagc 3929
>emb|AL844876.4|CNS08CAZ Oryza sativa chromosome 12, . BAC OSJNBa0063F10 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 153687
Score = 42.1 bits (21), Expect = 0.35
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 171 gcgaggccgtgctggagtccatcatcggggagc 203
||||||| |||||||| ||||||||||| ||||
Sbjct: 27350 gcgaggcggtgctggattccatcatcggcgagc 27382
>ref|NT_107148.1| Oryza sativa (japonica cultivar-group)
Length = 1822333
Score = 42.1 bits (21), Expect = 0.35
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 171 gcgaggccgtgctggagtccatcatcggggagc 203
||||||| |||||||| ||||||||||| ||||
Sbjct: 1544230 gcgaggcggtgctggattccatcatcggcgagc 1544198
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0415A04
Length = 160669
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 130 gccggcggccggcggcgtggc 150
|||||||||||||||||||||
Sbjct: 10480 gccggcggccggcggcgtggc 10460
>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1070A12
Length = 148449
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 130 gccggcggccggcggcgtggc 150
|||||||||||||||||||||
Sbjct: 127561 gccggcggccggcggcgtggc 127541
>gb|AACV01010641.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010641, whole
genome shotgun sequence
Length = 7252
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 264 aggagaccgccgcgcccgccg 284
|||||||||||||||||||||
Sbjct: 7227 aggagaccgccgcgcccgccg 7207
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 130 gccggcggccggcggcgtggc 150
|||||||||||||||||||||
Sbjct: 33414984 gccggcggccggcggcgtggc 33414964
>ref|XM_474276.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1263
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 264 aggagaccgccgcgcccgccg 284
|||||||||||||||||||||
Sbjct: 119 aggagaccgccgcgcccgccg 139
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 130 gccggcggccggcggcgtggc 150
|||||||||||||||||||||
Sbjct: 7862367 gccggcggccggcggcgtggc 7862347
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 264 aggagaccgccgcgcccgccg 284
|||||||||||||||||||||
Sbjct: 1539532 aggagaccgccgcgcccgccg 1539552
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 264 aggagaccgccgcgcccgccg 284
|||||||||||||||||||||
Sbjct: 11734500 aggagaccgccgcgcccgccg 11734520
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 264 aggagaccgccgcgcccgccg 284
|||||||||||||||||||||
Sbjct: 30878599 aggagaccgccgcgcccgccg 30878619
>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
complete sequence
Length = 190432
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 264 aggagaccgccgcgcccgccg 284
|||||||||||||||||||||
Sbjct: 55788 aggagaccgccgcgcccgccg 55808
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 130 gccggcggccggcggcgtggc 150
|||||||||||||||||||||
Sbjct: 33334314 gccggcggccggcggcgtggc 33334294
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 264 aggagaccgccgcgcccgccg 284
|||||||||||||||||||||
Sbjct: 34144406 aggagaccgccgcgcccgccg 34144426
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 42.1 bits (21), Expect = 0.35
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 171 gcgaggccgtgctggagtccatcatcggggagc 203
||||||| |||||||| ||||||||||| ||||
Sbjct: 15228568 gcgaggcggtgctggattccatcatcggcgagc 15228536
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 42.1 bits (21), Expect = 0.35
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 171 gcgaggccgtgctggagtccatcatcggggagc 203
||||||| |||||||| ||||||||||| ||||
Sbjct: 15182851 gcgaggcggtgctggattccatcatcggcgagc 15182819
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,082,321
Number of Sequences: 438736
Number of extensions: 1082321
Number of successful extensions: 15192
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14737
Number of HSP's gapped (non-prelim): 455
length of query: 627
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 606
effective length of database: 2,791,206,460
effective search space: 1691471114760
effective search space used: 1691471114760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)