BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623051.2.1
(991 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB680394.1|CB680394 OSJNEf05A10.f OSJNEf Oryza sativa (j... 174 6e-041
dbj|AK101721.1| Oryza sativa (japonica cultivar-group) cDNA... 174 6e-041
ref|NM_189771.1| Oryza sativa (japonica cultivar-group), p... 174 6e-041
gb|D24560.1|D24560 RICR2168A Rice root Oryza sativa (japoni... 161 9e-037
dbj|AP004319.1| Oryza sativa (japonica cultivar-group) chro... 129 3e-027
gb|AACV01003055.1| Oryza sativa (japonica cultivar-group) c... 129 3e-027
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 129 3e-027
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 129 3e-027
dbj|AP003683.3| Oryza sativa (japonica cultivar-group) geno... 129 3e-027
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 129 3e-027
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 129 3e-027
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 129 3e-027
dbj|AK059734.1| Oryza sativa (japonica cultivar-group) cDNA... 98 1e-017
ref|XM_474315.1| Oryza sativa (japonica cultivar-group), p... 98 1e-017
dbj|AK058585.1| Oryza sativa (japonica cultivar-group) cDNA... 86 4e-014
gb|CF320960.1|CF320960 HD--12-A18.g1 OsHDAC1-overexpressing... 80 3e-012
gb|AACV01010650.1| Oryza sativa (japonica cultivar-group) c... 76 4e-011
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 76 4e-011
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 76 4e-011
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 76 4e-011
emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromoso... 76 4e-011
emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC... 76 4e-011
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 76 4e-011
gb|CD670926.1|CD670926 OsMR347 5MT resistant rice mutant cD... 74 2e-010
dbj|AK106426.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
gb|DU133949.1|DU133949 UCDRGT3139_5.1 UCD RGT Rice Insertio... 68 1e-008
gb|AQ291089.1|AQ291089 nbxb0038C02r CUGI Rice BAC Library O... 66 4e-008
gb|CF293857.1|CF293857 30DGS--03-C24.b1 Rice leaf plasmid c... 66 4e-008
gb|CF293858.1|CF293858 30DGS--03-C24.g1 Rice leaf plasmid c... 66 4e-008
dbj|AK120926.1| Oryza sativa (japonica cultivar-group) cDNA... 66 4e-008
emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC O... 66 4e-008
emb|AL928752.2|CNS08CBP Oryza sativa chromosome 12, . BAC O... 66 4e-008
gb|AC123526.2| Oryza sativa japonica cultivar-group chromos... 66 4e-008
ref|NT_107134.1| Oryza sativa (japonica cultivar-group) 66 4e-008
ref|NT_107145.1| Oryza sativa (japonica cultivar-group) 66 4e-008
gb|AACV01022333.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
gb|AACV01023936.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
ref|NM_187101.1| Oryza sativa (japonica cultivar-group), mRNA 66 4e-008
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|AACV01010149.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
emb|AL663010.4|OSJN00211 Oryza sativa genomic DNA, chromoso... 56 4e-005
gb|AACV01016034.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
dbj|AP003802.2| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 52 6e-004
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
gb|AQ913127.1|AQ913127 nbeb0040I04f CUGI Rice BAC Library (... 48 0.009
gb|C25454.1|C25454 C25454 Rice shoot Oryza sativa (japonica... 48 0.009
gb|D16010.1|D16010 RICC2013A Rice callus Oryza sativa (japo... 48 0.009
gb|C99288.1|C99288 C99288 Rice panicle at ripening stage Or... 48 0.009
gb|C99370.1|C99370 C99370 Rice panicle at ripening stage Or... 48 0.009
gb|AU056797.1|AU056797 AU056797 Oryza sativa mature leaf Ni... 48 0.009
gb|AU093130.1|AU093130 AU093130 Rice callus Oryza sativa (j... 48 0.009
gb|AU162921.1|AU162921 AU162921 Rice green shoot Oryza sati... 48 0.009
gb|AU197959.1|AU197959 AU197959 Rice green shoot Oryza sati... 48 0.009
gb|CB000011.1|CB000011 S345V_H02 Rice cold stress germinati... 48 0.009
gb|CB642050.1|CB642050 OSJNEb02A10.r OSJNEb Oryza sativa (j... 48 0.009
gb|CB645009.1|CB645009 OSJNEb06H11.r OSJNEb Oryza sativa (j... 48 0.009
gb|CB648244.1|CB648244 OSJNEb11I17.r OSJNEb Oryza sativa (j... 48 0.009
gb|CB648299.1|CB648299 OSJNEb11J23.r OSJNEb Oryza sativa (j... 48 0.009
gb|CB650132.1|CB650132 OSJNEb14G16.r OSJNEb Oryza sativa (j... 48 0.009
gb|CB653580.1|CB653580 OSJNEc04M02.r OSJNEc Oryza sativa (j... 48 0.009
gb|CB659807.1|CB659807 OSJNEd01B05.r OSJNEd Oryza sativa (j... 48 0.009
gb|CB665040.1|CB665040 OSJNEd11C06.r OSJNEd Oryza sativa (j... 48 0.009
gb|CB667093.1|CB667093 OSJNEd14E10.r OSJNEd Oryza sativa (j... 48 0.009
gb|CB674797.1|CB674797 OSJNEe10A17.r OSJNEe Oryza sativa (j... 48 0.009
gb|CB674848.1|CB674848 OSJNEe10C07.r OSJNEe Oryza sativa (j... 48 0.009
gb|CB679791.1|CB679791 OSJNEf03L15.r OSJNEf Oryza sativa (j... 48 0.009
gb|CF276063.1|CF276063 14ETL--01-B04.g1 Rice etiolated leaf... 48 0.009
gb|CF276800.1|CF276800 14ETL--02-B13.g1 Rice etiolated leaf... 48 0.009
gb|CF277355.1|CF277355 14ETL--02-N17.g1 Rice etiolated leaf... 48 0.009
gb|CF278476.1|CF278476 14ETL--04-G10.g1 Rice etiolated leaf... 48 0.009
gb|CF279849.1|CF279849 14ETL--06-E21.g1 Rice etiolated leaf... 48 0.009
gb|CF279903.1|CF279903 14ETL--06-G02.g1 Rice etiolated leaf... 48 0.009
gb|CF280286.1|CF280286 14ETL--06-O08.g1 Rice etiolated leaf... 48 0.009
gb|CF280317.1|CF280317 14ETL--06-O24.g1 Rice etiolated leaf... 48 0.009
gb|CF280427.1|CF280427 14ETL--07-B14.g1 Rice etiolated leaf... 48 0.009
gb|CF280706.1|CF280706 14ETL--07-H18.g1 Rice etiolated leaf... 48 0.009
gb|CV721248.1|CV721248 YBH--03-G24.b1 Rice before heading y... 48 0.009
gb|CV721695.1|CV721695 YBH--05-A02.b1 Rice before heading y... 48 0.009
gb|CX056240.1|CX056240 AA-CTA1 Rice cold stress germination... 48 0.009
gb|CX056247.1|CX056247 AC-CAC5 Rice cold stress germination... 48 0.009
dbj|AP004793.1| Oryza sativa (japonica cultivar-group) chro... 48 0.009
dbj|AK061922.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
dbj|AK069453.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
dbj|AK070645.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
dbj|AK101956.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
dbj|AP005808.3| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|AACV01004677.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
gb|AACV01010242.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
ref|XM_466223.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.009
ref|XM_473410.1| Oryza sativa (japonica cultivar-group), p... 48 0.009
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 48 0.009
ref|XM_506827.1| PREDICTED Oryza sativa (japonica cultivar-... 48 0.009
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 48 0.009
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromoso... 48 0.009
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|AU032620.1|AU032620 AU032620 Rice green shoot Oryza sati... 46 0.036
gb|AU096081.1|AU096081 AU096081 Rice green shoot Oryza sati... 46 0.036
gb|CF317127.1|CF317127 HD--06-L07.b1 OsHDAC1-overexpressing... 46 0.036
dbj|AK109703.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.036
dbj|AK110173.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.036
gb|AACV01010042.1| Oryza sativa (japonica cultivar-group) c... 46 0.036
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 46 0.036
emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromoso... 46 0.036
dbj|AP003820.1| Oryza sativa (japonica cultivar-group) chro... 44 0.14
gb|AC134347.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
dbj|AK062612.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK065950.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 gen... 44 0.14
gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04... 44 0.14
dbj|AP005325.5| Oryza sativa (japonica cultivar-group) geno... 44 0.14
dbj|AP003281.3| Oryza sativa (japonica cultivar-group) geno... 44 0.14
dbj|AP003236.3| Oryza sativa (japonica cultivar-group) geno... 44 0.14
gb|AACV01001109.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01007258.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01008045.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01015863.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
ref|NM_193813.1| Oryza sativa (japonica cultivar-group), p... 44 0.14
ref|NM_187806.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.14
ref|XM_463109.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.14
ref|XM_466892.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.14
ref|NT_079947.2| Oryza sativa (japonica cultivar-group) 44 0.14
ref|NT_107174.1| Oryza sativa (japonica cultivar-group) 44 0.14
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 44 0.14
dbj|AP006530.3| Oryza sativa (japonica cultivar-group) geno... 44 0.14
dbj|AP008247.2| Oryza sativa (japonica cultivar-group) geno... 44 0.14
gb|CH401223.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 44 0.14
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|AC092778.5| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|DQ231252.1| Oryza sativa (japonica cultivar-group) SNARE... 44 0.14
>gb|CB680394.1|CB680394 OSJNEf05A10.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf05A10 5', mRNA sequence
Length = 806
Score = 174 bits (88), Expect = 6e-041
Identities = 208/248 (83%)
Strand = Plus / Minus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
|||||||| |||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 633 agcaggtgagacttgagcttcttcatgtcagcgagcttgacaggtttcaggaagaactcc 574
Query: 518 tccgcgccatcctgcaagcacctgctgatccgggcaggcacgttctcagacgacatgatc 577
|| || ||||| | |||||||||| |||||| |||||||| |||||||| |||||||||
Sbjct: 573 tctgcaccatcttccaagcacctgttgatccttgcaggcacattctcagaagacatgatc 514
Query: 578 accaccggaatgtccgtgagcgatgaggaccccttcactcgcgtgagcagatcgtatcct 637
|| || || |||||| | | || || || |||||||| | | |||||||||| || |||
Sbjct: 513 acaactggtatgtccttcaatgaagatgatcccttcaccctcttgagcagatcataccct 454
Query: 638 gtcatgccgggcatgcagtagtcagtgatgatgagactcacgtcgatctcctgatggtca 697
|||||||| |||||||||||||||||||| || || | || || |||||||||||||||
Sbjct: 453 gtcatgccaggcatgcagtagtcagtgattatcaggttgacatcaatctcctgatggtca 394
Query: 698 ggggagga 705
|| |||||
Sbjct: 393 ggtgagga 386
Score = 168 bits (85), Expect = 4e-039
Identities = 133/149 (89%)
Strand = Plus / Minus
Query: 773 agcagctccagcgccttgttcccggaatccaccgtggtcacttggtaagacgagctcttg 832
|||||||||| |||||| |||| |||||||| |||||||||||||| |||||| |||||
Sbjct: 339 agcagctccaaggccttgctcccagaatccacagtggtcacttggtaggacgagttcttg 280
Query: 833 agcagcatctcgatgagcttcctgtcgatgatgctgtcgtccaccgccaggacatggaac 892
||||||||||||||||||||||||||||| | ||| || |||||||| ||||||||||||
Sbjct: 279 agcagcatctcgatgagcttcctgtcgatcaggctatcatccaccgcgaggacatggaac 220
Query: 893 cgcgactcggcgtccagcaccgtcatggc 921
|||||||| || || | ||||||||||||
Sbjct: 219 cgcgactccgcatcaaccaccgtcatggc 191
>dbj|AK101721.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061A20, full
insert sequence
Length = 1607
Score = 174 bits (88), Expect = 6e-041
Identities = 208/248 (83%)
Strand = Plus / Minus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
|||||||| |||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 851 agcaggtgagacttgagcttcttcatgtcagcgagcttgacaggtttcaggaagaactcc 792
Query: 518 tccgcgccatcctgcaagcacctgctgatccgggcaggcacgttctcagacgacatgatc 577
|| || ||||| | |||||||||| |||||| |||||||| |||||||| |||||||||
Sbjct: 791 tctgcaccatcttccaagcacctgttgatccttgcaggcacattctcagaagacatgatc 732
Query: 578 accaccggaatgtccgtgagcgatgaggaccccttcactcgcgtgagcagatcgtatcct 637
|| || || |||||| | | || || || |||||||| | | |||||||||| || |||
Sbjct: 731 acaactggtatgtccttcaatgaagatgatcccttcaccctcttgagcagatcataccct 672
Query: 638 gtcatgccgggcatgcagtagtcagtgatgatgagactcacgtcgatctcctgatggtca 697
|||||||| |||||||||||||||||||| || || | || || |||||||||||||||
Sbjct: 671 gtcatgccaggcatgcagtagtcagtgattatcaggttgacatcaatctcctgatggtca 612
Query: 698 ggggagga 705
|| |||||
Sbjct: 611 ggtgagga 604
Score = 168 bits (85), Expect = 4e-039
Identities = 133/149 (89%)
Strand = Plus / Minus
Query: 773 agcagctccagcgccttgttcccggaatccaccgtggtcacttggtaagacgagctcttg 832
|||||||||| |||||| |||| |||||||| |||||||||||||| |||||| |||||
Sbjct: 557 agcagctccaaggccttgctcccagaatccacagtggtcacttggtaggacgagttcttg 498
Query: 833 agcagcatctcgatgagcttcctgtcgatgatgctgtcgtccaccgccaggacatggaac 892
||||||||||||||||||||||||||||| | ||| || |||||||| ||||||||||||
Sbjct: 497 agcagcatctcgatgagcttcctgtcgatcaggctatcatccaccgcgaggacatggaac 438
Query: 893 cgcgactcggcgtccagcaccgtcatggc 921
|||||||| || || | ||||||||||||
Sbjct: 437 cgcgactccgcatcaaccaccgtcatggc 409
>ref|NM_189771.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 699
Score = 174 bits (88), Expect = 6e-041
Identities = 208/248 (83%)
Strand = Plus / Minus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
|||||||| |||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 440 agcaggtgagacttgagcttcttcatgtcagcgagcttgacaggtttcaggaagaactcc 381
Query: 518 tccgcgccatcctgcaagcacctgctgatccgggcaggcacgttctcagacgacatgatc 577
|| || ||||| | |||||||||| |||||| |||||||| |||||||| |||||||||
Sbjct: 380 tctgcaccatcttccaagcacctgttgatccttgcaggcacattctcagaagacatgatc 321
Query: 578 accaccggaatgtccgtgagcgatgaggaccccttcactcgcgtgagcagatcgtatcct 637
|| || || |||||| | | || || || |||||||| | | |||||||||| || |||
Sbjct: 320 acaactggtatgtccttcaatgaagatgatcccttcaccctcttgagcagatcataccct 261
Query: 638 gtcatgccgggcatgcagtagtcagtgatgatgagactcacgtcgatctcctgatggtca 697
|||||||| |||||||||||||||||||| || || | || || |||||||||||||||
Sbjct: 260 gtcatgccaggcatgcagtagtcagtgattatcaggttgacatcaatctcctgatggtca 201
Query: 698 ggggagga 705
|| |||||
Sbjct: 200 ggtgagga 193
Score = 163 bits (82), Expect = 2e-037
Identities = 130/146 (89%)
Strand = Plus / Minus
Query: 773 agcagctccagcgccttgttcccggaatccaccgtggtcacttggtaagacgagctcttg 832
|||||||||| |||||| |||| |||||||| |||||||||||||| |||||| |||||
Sbjct: 146 agcagctccaaggccttgctcccagaatccacagtggtcacttggtaggacgagttcttg 87
Query: 833 agcagcatctcgatgagcttcctgtcgatgatgctgtcgtccaccgccaggacatggaac 892
||||||||||||||||||||||||||||| | ||| || |||||||| ||||||||||||
Sbjct: 86 agcagcatctcgatgagcttcctgtcgatcaggctatcatccaccgcgaggacatggaac 27
Query: 893 cgcgactcggcgtccagcaccgtcat 918
|||||||| || || | |||||||||
Sbjct: 26 cgcgactccgcatcaaccaccgtcat 1
>gb|D24560.1|D24560 RICR2168A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2168_1A, mRNA sequence
Length = 319
Score = 161 bits (81), Expect = 9e-037
Identities = 177/209 (84%)
Strand = Plus / Minus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
|||||||| |||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 217 agcaggtgagacttgagcttcttcatgtcagcgagcttgacaggtttcaggaagaactcc 158
Query: 518 tccgcgccatcctgcaagcacctgctgatccgggcaggcacgttctcagacgacatgatc 577
|| || ||||| | |||||||||| |||||| |||||||| |||||||| |||||||||
Sbjct: 157 tctgcaccatcttccaagcacctgttgatccttgcaggcacattctcagaagacatgatc 98
Query: 578 accaccggaatgtccgtgagcgatgaggaccccttcactcgcgtgagcagatcgtatcct 637
|| || || |||||| | | || || || |||||||| | | |||||||||| || |||
Sbjct: 97 acaactggtatgtccttcaatgaagatgatcccttcaccctcttgagcagatcataccct 38
Query: 638 gtcatgccgggcatgcagtagtcagtgat 666
|||||||| ||||||||||||||||||||
Sbjct: 37 gtcatgccaggcatgcagtagtcagtgat 9
>dbj|AP004319.1| Oryza sativa (japonica cultivar-group) chromosome 1 clone B1017B03,
*** SEQUENCING IN PROGRESS ***
Length = 145847
Score = 129 bits (65), Expect = 3e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||||| |||||| |||||||||||||||||||||||||||||||||| | ||| || |
Sbjct: 9224 cttggtaggacgagttcttgagcagcatctcgatgagcttcctgtcgatcaggctatcat 9165
Query: 873 ccaccgccaggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||| |||||||||||||||||||| || || | ||||||||||||
Sbjct: 9164 ccaccgcgaggacatggaaccgcgactccgcatcaaccaccgtcatggc 9116
Score = 79.8 bits (40), Expect = 3e-012
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
|||||||| |||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 11390 agcaggtgagacttgagcttcttcatgtcagcgagcttgacaggtttcaggaagaactcc 11331
Query: 518 tccgcgccatcctgcaagcacctg 541
|| || ||||| | ||||||||||
Sbjct: 11330 tctgcaccatcttccaagcacctg 11307
Score = 67.9 bits (34), Expect = 1e-008
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgat 666
|||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 9645 tgagcagatcataccctgtcatgccaggcatgcagtagtcagtgat 9600
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtcc 592
|||||| |||||| |||||||| |||||||| ||||||||||| || || ||||||
Sbjct: 9851 cacctgttgatccttgcaggcacattctcagaagacatgatcacaactggtatgtcc 9795
>gb|AACV01003055.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003055, whole
genome shotgun sequence
Length = 32070
Score = 129 bits (65), Expect = 3e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||||| |||||| |||||||||||||||||||||||||||||||||| | ||| || |
Sbjct: 2497 cttggtaggacgagttcttgagcagcatctcgatgagcttcctgtcgatcaggctatcat 2438
Query: 873 ccaccgccaggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||| |||||||||||||||||||| || || | ||||||||||||
Sbjct: 2437 ccaccgcgaggacatggaaccgcgactccgcatcaaccaccgtcatggc 2389
Score = 79.8 bits (40), Expect = 3e-012
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
|||||||| |||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 4663 agcaggtgagacttgagcttcttcatgtcagcgagcttgacaggtttcaggaagaactcc 4604
Query: 518 tccgcgccatcctgcaagcacctg 541
|| || ||||| | ||||||||||
Sbjct: 4603 tctgcaccatcttccaagcacctg 4580
Score = 67.9 bits (34), Expect = 1e-008
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgat 666
|||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 2918 tgagcagatcataccctgtcatgccaggcatgcagtagtcagtgat 2873
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtcc 592
|||||| |||||| |||||||| |||||||| ||||||||||| || || ||||||
Sbjct: 3124 cacctgttgatccttgcaggcacattctcagaagacatgatcacaactggtatgtcc 3068
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 129 bits (65), Expect = 3e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||||| |||||| |||||||||||||||||||||||||||||||||| | ||| || |
Sbjct: 42022495 cttggtaggacgagttcttgagcagcatctcgatgagcttcctgtcgatcaggctatcat 42022436
Query: 873 ccaccgccaggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||| |||||||||||||||||||| || || | ||||||||||||
Sbjct: 42022435 ccaccgcgaggacatggaaccgcgactccgcatcaaccaccgtcatggc 42022387
Score = 79.8 bits (40), Expect = 3e-012
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
|||||||| |||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 42024661 agcaggtgagacttgagcttcttcatgtcagcgagcttgacaggtttcaggaagaactcc 42024602
Query: 518 tccgcgccatcctgcaagcacctg 541
|| || ||||| | ||||||||||
Sbjct: 42024601 tctgcaccatcttccaagcacctg 42024578
Score = 67.9 bits (34), Expect = 1e-008
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgat 666
|||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 42022916 tgagcagatcataccctgtcatgccaggcatgcagtagtcagtgat 42022871
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtcc 592
|||||| |||||| |||||||| |||||||| ||||||||||| || || ||||||
Sbjct: 42023122 cacctgttgatccttgcaggcacattctcagaagacatgatcacaactggtatgtcc 42023066
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 850 cttcctgtcgatgatgctgtcg 871
||||||||||||||||||||||
Sbjct: 15080011 cttcctgtcgatgatgctgtcg 15079990
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 129 bits (65), Expect = 3e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||||| |||||| |||||||||||||||||||||||||||||||||| | ||| || |
Sbjct: 1650789 cttggtaggacgagttcttgagcagcatctcgatgagcttcctgtcgatcaggctatcat 1650730
Query: 873 ccaccgccaggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||| |||||||||||||||||||| || || | ||||||||||||
Sbjct: 1650729 ccaccgcgaggacatggaaccgcgactccgcatcaaccaccgtcatggc 1650681
Score = 79.8 bits (40), Expect = 3e-012
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
|||||||| |||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 1652955 agcaggtgagacttgagcttcttcatgtcagcgagcttgacaggtttcaggaagaactcc 1652896
Query: 518 tccgcgccatcctgcaagcacctg 541
|| || ||||| | ||||||||||
Sbjct: 1652895 tctgcaccatcttccaagcacctg 1652872
Score = 67.9 bits (34), Expect = 1e-008
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgat 666
|||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 1651210 tgagcagatcataccctgtcatgccaggcatgcagtagtcagtgat 1651165
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtcc 592
|||||| |||||| |||||||| |||||||| ||||||||||| || || ||||||
Sbjct: 1651416 cacctgttgatccttgcaggcacattctcagaagacatgatcacaactggtatgtcc 1651360
>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0431G06
Length = 140466
Score = 129 bits (65), Expect = 3e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||||| |||||| |||||||||||||||||||||||||||||||||| | ||| || |
Sbjct: 43902 cttggtaggacgagttcttgagcagcatctcgatgagcttcctgtcgatcaggctatcat 43843
Query: 873 ccaccgccaggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||| |||||||||||||||||||| || || | ||||||||||||
Sbjct: 43842 ccaccgcgaggacatggaaccgcgactccgcatcaaccaccgtcatggc 43794
Score = 79.8 bits (40), Expect = 3e-012
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
|||||||| |||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 46068 agcaggtgagacttgagcttcttcatgtcagcgagcttgacaggtttcaggaagaactcc 46009
Query: 518 tccgcgccatcctgcaagcacctg 541
|| || ||||| | ||||||||||
Sbjct: 46008 tctgcaccatcttccaagcacctg 45985
Score = 67.9 bits (34), Expect = 1e-008
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgat 666
|||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 44323 tgagcagatcataccctgtcatgccaggcatgcagtagtcagtgat 44278
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtcc 592
|||||| |||||| |||||||| |||||||| ||||||||||| || || ||||||
Sbjct: 44529 cacctgttgatccttgcaggcacattctcagaagacatgatcacaactggtatgtcc 44473
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 129 bits (65), Expect = 3e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||||| |||||| |||||||||||||||||||||||||||||||||| | ||| || |
Sbjct: 16137214 cttggtaggacgagttcttgagcagcatctcgatgagcttcctgtcgatcaggctatcat 16137155
Query: 873 ccaccgccaggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||| |||||||||||||||||||| || || | ||||||||||||
Sbjct: 16137154 ccaccgcgaggacatggaaccgcgactccgcatcaaccaccgtcatggc 16137106
Score = 79.8 bits (40), Expect = 3e-012
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
|||||||| |||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 16139380 agcaggtgagacttgagcttcttcatgtcagcgagcttgacaggtttcaggaagaactcc 16139321
Query: 518 tccgcgccatcctgcaagcacctg 541
|| || ||||| | ||||||||||
Sbjct: 16139320 tctgcaccatcttccaagcacctg 16139297
Score = 67.9 bits (34), Expect = 1e-008
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgat 666
|||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 16137635 tgagcagatcataccctgtcatgccaggcatgcagtagtcagtgat 16137590
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtcc 592
|||||| |||||| |||||||| |||||||| ||||||||||| || || ||||||
Sbjct: 16137841 cacctgttgatccttgcaggcacattctcagaagacatgatcacaactggtatgtcc 16137785
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 129 bits (65), Expect = 3e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||||| |||||| |||||||||||||||||||||||||||||||||| | ||| || |
Sbjct: 41338935 cttggtaggacgagttcttgagcagcatctcgatgagcttcctgtcgatcaggctatcat 41338876
Query: 873 ccaccgccaggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||| |||||||||||||||||||| || || | ||||||||||||
Sbjct: 41338875 ccaccgcgaggacatggaaccgcgactccgcatcaaccaccgtcatggc 41338827
Score = 79.8 bits (40), Expect = 3e-012
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
|||||||| |||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 41341101 agcaggtgagacttgagcttcttcatgtcagcgagcttgacaggtttcaggaagaactcc 41341042
Query: 518 tccgcgccatcctgcaagcacctg 541
|| || ||||| | ||||||||||
Sbjct: 41341041 tctgcaccatcttccaagcacctg 41341018
Score = 67.9 bits (34), Expect = 1e-008
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgat 666
|||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 41339356 tgagcagatcataccctgtcatgccaggcatgcagtagtcagtgat 41339311
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtcc 592
|||||| |||||| |||||||| |||||||| ||||||||||| || || ||||||
Sbjct: 41339562 cacctgttgatccttgcaggcacattctcagaagacatgatcacaactggtatgtcc 41339506
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 850 cttcctgtcgatgatgctgtcg 871
||||||||||||||||||||||
Sbjct: 14994390 cttcctgtcgatgatgctgtcg 14994369
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 129 bits (65), Expect = 3e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||||| |||||| |||||||||||||||||||||||||||||||||| | ||| || |
Sbjct: 41941825 cttggtaggacgagttcttgagcagcatctcgatgagcttcctgtcgatcaggctatcat 41941766
Query: 873 ccaccgccaggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||| |||||||||||||||||||| || || | ||||||||||||
Sbjct: 41941765 ccaccgcgaggacatggaaccgcgactccgcatcaaccaccgtcatggc 41941717
Score = 79.8 bits (40), Expect = 3e-012
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
|||||||| |||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 41943991 agcaggtgagacttgagcttcttcatgtcagcgagcttgacaggtttcaggaagaactcc 41943932
Query: 518 tccgcgccatcctgcaagcacctg 541
|| || ||||| | ||||||||||
Sbjct: 41943931 tctgcaccatcttccaagcacctg 41943908
Score = 67.9 bits (34), Expect = 1e-008
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgat 666
|||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 41942246 tgagcagatcataccctgtcatgccaggcatgcagtagtcagtgat 41942201
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtcc 592
|||||| |||||| |||||||| |||||||| ||||||||||| || || ||||||
Sbjct: 41942452 cacctgttgatccttgcaggcacattctcagaagacatgatcacaactggtatgtcc 41942396
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 850 cttcctgtcgatgatgctgtcg 871
||||||||||||||||||||||
Sbjct: 15082229 cttcctgtcgatgatgctgtcg 15082208
>dbj|AK059734.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B01, full
insert sequence
Length = 1011
Score = 97.6 bits (49), Expect = 1e-017
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| || | ||| ||||| ||||| |||| || ||||| |||||||||| |||
Sbjct: 572 acgggcttgagcaggaagtcctcggcgccctcctccaggcaccggctgatccggttcggc 513
Query: 557 acgttctcagacgacatgatcaccaccggaatgtccgtgagcgatgaggaccccttcact 616
|||||||| |||||||||||||||||||| || ||| ||||| || || |||| ||
Sbjct: 512 acgttctccgacgacatgatcaccaccgggatctccttgagctgagacgattccttgacg 453
Query: 617 cgcgtgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||| |||| || ||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 452 cgcttgaggagctcgtagccggtcatgccgggcatccagtagtcggtgatgat 400
>ref|XM_474315.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 513
Score = 97.6 bits (49), Expect = 1e-017
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| || | ||| ||||| ||||| |||| || ||||| |||||||||| |||
Sbjct: 470 acgggcttgagcaggaagtcctcggcgccctcctccaggcaccggctgatccggttcggc 411
Query: 557 acgttctcagacgacatgatcaccaccggaatgtccgtgagcgatgaggaccccttcact 616
|||||||| |||||||||||||||||||| || ||| ||||| || || |||| ||
Sbjct: 410 acgttctccgacgacatgatcaccaccgggatctccttgagctgagacgattccttgacg 351
Query: 617 cgcgtgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||| |||| || ||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 350 cgcttgaggagctcgtagccggtcatgccgggcatccagtagtcggtgatgat 298
>dbj|AK058585.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-G01, full
insert sequence
Length = 919
Score = 85.7 bits (43), Expect = 4e-014
Identities = 97/115 (84%)
Strand = Plus / Minus
Query: 778 ctccagcgccttgttcccggaatccaccgtggtcacttggtaagacgagctcttgagcag 837
|||||| |||||| |||||||||| || ||||| |||||| |||| ||| ||||||| ||
Sbjct: 227 ctccagagccttgctcccggaatcaacagtggtaacttggaaagaagaggtcttgagtag 168
Query: 838 catctcgatgagcttcctgtcgatgatgctgtcgtccaccgccaggacatggaac 892
| ||||||||||||||||||| | ||| || ||||| |||||||||||||||
Sbjct: 167 cctctcgatgagcttcctgtcaggaaggctatcatccacagccaggacatggaac 113
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 351 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 303
>gb|CF320960.1|CF320960 HD--12-A18.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--12-A18, mRNA sequence
Length = 597
Score = 79.8 bits (40), Expect = 3e-012
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
|||||||| |||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 235 agcaggtgagacttgagcttcttcatgtcagcgagcttgacaggtttcaggaagaactcc 176
Query: 518 tccgcgccatcctgcaagcacctg 541
|| || ||||| | ||||||||||
Sbjct: 175 tctgcaccatcttccaagcacctg 152
>gb|AACV01010650.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010650, whole
genome shotgun sequence
Length = 44198
Score = 75.8 bits (38), Expect = 4e-011
Identities = 86/102 (84%)
Strand = Plus / Plus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| || | ||| ||||| ||||| |||| || ||||| |||||||||| |||
Sbjct: 31699 acgggcttgagcaggaagtcctcggcgccctcctccaggcaccggctgatccggttcggc 31758
Query: 557 acgttctcagacgacatgatcaccaccggaatgtccgtgagc 598
|||||||| |||||||||||||||||||| || ||| |||||
Sbjct: 31759 acgttctccgacgacatgatcaccaccgggatctccttgagc 31800
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 31935 tcgtagccggtcatgccgggcatccagtagtcggtgatgat 31975
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 75.8 bits (38), Expect = 4e-011
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| || | ||| ||||| ||||| |||| || ||||| |||||||||| |||
Sbjct: 1806914 acgggcttgagcaggaagtcctcggcgccctcctccaggcaccggctgatccggttcggc 1806855
Query: 557 acgttctcagacgacatgatcaccaccggaatgtccgtgagc 598
|||||||| |||||||||||||||||||| || ||| |||||
Sbjct: 1806854 acgttctccgacgacatgatcaccaccgggatctccttgagc 1806813
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 1806678 tcgtagccggtcatgccgggcatccagtagtcggtgatgat 1806638
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 75.8 bits (38), Expect = 4e-011
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| || | ||| ||||| ||||| |||| || ||||| |||||||||| |||
Sbjct: 11987441 acgggcttgagcaggaagtcctcggcgccctcctccaggcaccggctgatccggttcggc 11987382
Query: 557 acgttctcagacgacatgatcaccaccggaatgtccgtgagc 598
|||||||| |||||||||||||||||||| || ||| |||||
Sbjct: 11987381 acgttctccgacgacatgatcaccaccgggatctccttgagc 11987340
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 490 cggcttcacgggcttcaggaagaactcctccgcgccatcctgcaagcacctg 541
||||| |||||||||||| ||||| |||||||| || |||| ||||||||||
Sbjct: 4043439 cggctgcacgggcttcagcaagaaatcctccgctccttcctccaagcacctg 4043388
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 11987205 tcgtagccggtcatgccgggcatccagtagtcggtgatgat 11987165
Score = 48.1 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 708 acgacgaagatgaggaggaggatg 731
||||||||||||||||||||||||
Sbjct: 5299795 acgacgaagatgaggaggaggatg 5299818
Score = 46.1 bits (23), Expect = 0.036
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 636 ctgtcatgccgggcatgcagtagtcagtgat 666
|||||||||| |||||| |||||||||||||
Sbjct: 2591121 ctgtcatgccaggcatgtagtagtcagtgat 2591151
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 75.8 bits (38), Expect = 4e-011
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| || | ||| ||||| ||||| |||| || ||||| |||||||||| |||
Sbjct: 31131540 acgggcttgagcaggaagtcctcggcgccctcctccaggcaccggctgatccggttcggc 31131481
Query: 557 acgttctcagacgacatgatcaccaccggaatgtccgtgagc 598
|||||||| |||||||||||||||||||| || ||| |||||
Sbjct: 31131480 acgttctccgacgacatgatcaccaccgggatctccttgagc 31131439
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 490 cggcttcacgggcttcaggaagaactcctccgcgccatcctgcaagcacctg 541
||||| |||||||||||| ||||| |||||||| || |||| ||||||||||
Sbjct: 23187538 cggctgcacgggcttcagcaagaaatcctccgctccttcctccaagcacctg 23187487
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 31131304 tcgtagccggtcatgccgggcatccagtagtcggtgatgat 31131264
Score = 48.1 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 708 acgacgaagatgaggaggaggatg 731
||||||||||||||||||||||||
Sbjct: 24443894 acgacgaagatgaggaggaggatg 24443917
Score = 46.1 bits (23), Expect = 0.036
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 636 ctgtcatgccgggcatgcagtagtcagtgat 666
|||||||||| |||||| |||||||||||||
Sbjct: 21735220 ctgtcatgccaggcatgtagtagtcagtgat 21735250
>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05,
complete sequence
Length = 164943
Score = 75.8 bits (38), Expect = 4e-011
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| || | ||| ||||| ||||| |||| || ||||| |||||||||| |||
Sbjct: 29273 acgggcttgagcaggaagtcctcggcgccctcctccaggcaccggctgatccggttcggc 29214
Query: 557 acgttctcagacgacatgatcaccaccggaatgtccgtgagc 598
|||||||| |||||||||||||||||||| || ||| |||||
Sbjct: 29213 acgttctccgacgacatgatcaccaccgggatctccttgagc 29172
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 29037 tcgtagccggtcatgccgggcatccagtagtcggtgatgat 28997
>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17,
complete sequence
Length = 159894
Score = 75.8 bits (38), Expect = 4e-011
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| || | ||| ||||| ||||| |||| || ||||| |||||||||| |||
Sbjct: 134862 acgggcttgagcaggaagtcctcggcgccctcctccaggcaccggctgatccggttcggc 134803
Query: 557 acgttctcagacgacatgatcaccaccggaatgtccgtgagc 598
|||||||| |||||||||||||||||||| || ||| |||||
Sbjct: 134802 acgttctccgacgacatgatcaccaccgggatctccttgagc 134761
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 134626 tcgtagccggtcatgccgggcatccagtagtcggtgatgat 134586
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 75.8 bits (38), Expect = 4e-011
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| || | ||| ||||| ||||| |||| || ||||| |||||||||| |||
Sbjct: 34411788 acgggcttgagcaggaagtcctcggcgccctcctccaggcaccggctgatccggttcggc 34411729
Query: 557 acgttctcagacgacatgatcaccaccggaatgtccgtgagc 598
|||||||| |||||||||||||||||||| || ||| |||||
Sbjct: 34411728 acgttctccgacgacatgatcaccaccgggatctccttgagc 34411687
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 490 cggcttcacgggcttcaggaagaactcctccgcgccatcctgcaagcacctg 541
||||| |||||||||||| ||||| |||||||| || |||| ||||||||||
Sbjct: 26201478 cggctgcacgggcttcagcaagaaatcctccgctccttcctccaagcacctg 26201427
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 34411552 tcgtagccggtcatgccgggcatccagtagtcggtgatgat 34411512
Score = 48.1 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 708 acgacgaagatgaggaggaggatg 731
||||||||||||||||||||||||
Sbjct: 27482958 acgacgaagatgaggaggaggatg 27482981
Score = 46.1 bits (23), Expect = 0.036
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 636 ctgtcatgccgggcatgcagtagtcagtgat 666
|||||||||| |||||| |||||||||||||
Sbjct: 24696205 ctgtcatgccaggcatgtagtagtcagtgat 24696235
>gb|CD670926.1|CD670926 OsMR347 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 717
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 778 ctccagcgccttgttcccggaatccaccgtggtcacttggtaagacgagctcttgagcag 837
|||||| |||||| |||| ||||| || ||||| |||||| |||| ||| ||||||| ||
Sbjct: 310 ctccagagccttgctccccgaatcaacagtggttacttggaaagaagaggtcttgagtag 251
Query: 838 catctcgatgagcttcctgtc 858
| |||||||||||||||||||
Sbjct: 250 cctctcgatgagcttcctgtc 230
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 434 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 386
>dbj|AK106426.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B09, full
insert sequence
Length = 839
Score = 73.8 bits (37), Expect = 2e-010
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 490 cggcttcacgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccg 549
||||| |||||||||||| ||||| |||||||| || |||| |||||||||| ||||||
Sbjct: 441 cggctgcacgggcttcagcaagaaatcctccgctccttcctccaagcacctgttgatcct 382
Query: 550 ggcaggcacgttctcagacgacatgatcaccac 582
| || |||||||| || ||||||||||||||
Sbjct: 381 tgtagagacgttctccgaggacatgatcaccac 349
>gb|DU133949.1|DU133949 UCDRGT3139_5.1 UCD RGT Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RGT3139_5.1, DNA sequence
Length = 292
Score = 67.9 bits (34), Expect = 1e-008
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgat 666
|||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 252 tgagcagatcataccctgtcatgccaggcatgcagtagtcagtgat 207
>gb|AQ291089.1|AQ291089 nbxb0038C02r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0038C02r, DNA sequence
Length = 625
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 469 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 421
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 114 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 55
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 54 ccacagccaggacatggaac 35
>gb|CF293857.1|CF293857 30DGS--03-C24.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--03-C24, mRNA sequence
Length = 654
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 490 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 538
>gb|CF293858.1|CF293858 30DGS--03-C24.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--03-C24, mRNA sequence
Length = 464
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 396 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 348
Score = 65.9 bits (33), Expect = 4e-008
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 778 ctccagcgccttgttcccggaatccaccgtggtcacttggtaagacgagctcttgagcag 837
|||||| |||||| |||||||||| || ||||| |||||| |||| ||| ||||||| ||
Sbjct: 272 ctccagagccttgctcccggaatcaacagtggtaacttggaaagaagaggtcttgagtag 213
Query: 838 catctcgatgagcttcctgtc 858
| | | |||||||||||||||
Sbjct: 212 cctatagatgagcttcctgtc 192
>dbj|AK120926.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035P07, full
insert sequence
Length = 825
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 344 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 296
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 164 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 105
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 104 ccacagccaggacatggaac 85
>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 128619
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 110187 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 110139
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 109832 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 109773
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 109772 ccacagccaggacatggaac 109753
>emb|AL928752.2|CNS08CBP Oryza sativa chromosome 12, . BAC OSJNBb0034E23 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 107247
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 52725 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 52773
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 53080 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 53139
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 53140 ccacagccaggacatggaac 53159
>gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06,
complete sequence
Length = 185449
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 68302 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 68254
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 67925 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 67866
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 67865 ccacagccaggacatggaac 67846
>ref|NT_107134.1| Oryza sativa (japonica cultivar-group)
Length = 568590
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 68302 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 68254
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 67925 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 67866
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 67865 ccacagccaggacatggaac 67846
>ref|NT_107145.1| Oryza sativa (japonica cultivar-group)
Length = 1968172
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 1915448 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 1915400
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 1915093 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 1915034
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 1915033 ccacagccaggacatggaac 1915014
>gb|AACV01022333.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022333, whole
genome shotgun sequence
Length = 21987
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 10760 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 10712
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 10383 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 10324
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 10323 ccacagccaggacatggaac 10304
>gb|AACV01023936.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg023936, whole
genome shotgun sequence
Length = 34818
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 20197 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 20245
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 20552 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 20611
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 20612 ccacagccaggacatggaac 20631
>ref|NM_187101.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 621
Score = 65.9 bits (33), Expect = 4e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| || | ||| ||||||||||| || | |||||| |||||||||| | |||
Sbjct: 575 acgggcttgagcaggaagtcctccgcgccttcttccaagcatctgctgatccttgtgggc 516
Query: 557 acgttctcagacgacatgatcaccaccgg 585
|||||||| |||||||| |||||||||||
Sbjct: 515 acgttctctgacgacattatcaccaccgg 487
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 1771586 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 1771538
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 1771231 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 1771172
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 1771171 ccacagccaggacatggaac 1771152
>gb|CH401257.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000094 genomic
scaffold, whole genome shotgun sequence
Length = 4775249
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 1877741 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 1877693
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 1877364 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 1877305
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 1877304 ccacagccaggacatggaac 1877285
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 1771586 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 1771538
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 1771231 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 1771172
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 1771171 ccacagccaggacatggaac 1771152
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 2180033 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 2179985
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 2179656 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 2179597
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 2179596 ccacagccaggacatggaac 2179577
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 1996747 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 1996699
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 1996370 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 1996311
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 1996310 ccacagccaggacatggaac 1996291
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 1915496 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 1915448
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 1915141 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 1915082
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 1915081 ccacagccaggacatggaac 1915062
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 2004528 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 2004480
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 2004151 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 2004092
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 2004091 ccacagccaggacatggaac 2004072
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 1915447 tgagaagatcatatcctgtcatgccaggcatgcagtagtctgtgatgat 1915399
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||| |||| ||| ||||||| ||| ||||||||||||||||||| | ||| || |
Sbjct: 1915092 cttggaaagaagaggtcttgagtagcctctcgatgagcttcctgtcaggaaggctatcat 1915033
Query: 873 ccaccgccaggacatggaac 892
|||| |||||||||||||||
Sbjct: 1915032 ccacagccaggacatggaac 1915013
>gb|AACV01010149.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010149, whole
genome shotgun sequence
Length = 17003
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 490 cggcttcacgggcttcaggaagaactcctccgcgccatcctgcaagcacctg 541
||||| |||||||||||| ||||| |||||||| || |||| ||||||||||
Sbjct: 12843 cggctgcacgggcttcagcaagaaatcctccgctccttcctccaagcacctg 12894
>emb|AL663010.4|OSJN00211 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0065J09,
complete sequence
Length = 117443
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 490 cggcttcacgggcttcaggaagaactcctccgcgccatcctgcaagcacctg 541
||||| |||||||||||| ||||| |||||||| || |||| ||||||||||
Sbjct: 88663 cggctgcacgggcttcagcaagaaatcctccgctccttcctccaagcacctg 88612
>gb|AACV01016034.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016034, whole
genome shotgun sequence
Length = 15851
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccgg 585
||||||||||||| | ||||||||||| |||||||| |||||||||||
Sbjct: 2563 cacctgctgatccttgtgggcacgttctctgacgacattatcaccaccgg 2514
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1047_A06
Length = 111673
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccgg 585
||||||||||||| | ||||||||||| |||||||| |||||||||||
Sbjct: 95400 cacctgctgatccttgtgggcacgttctctgacgacattatcaccaccgg 95351
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,895,304
Number of Sequences: 438736
Number of extensions: 1895304
Number of successful extensions: 23752
Number of sequences better than 0.5: 147
Number of HSP's better than 0.5 without gapping: 158
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21689
Number of HSP's gapped (non-prelim): 2015
length of query: 991
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 970
effective length of database: 2,791,206,460
effective search space: 2707470266200
effective search space used: 2707470266200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)