BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.1
(584 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK060049.1| Oryza sativa (japonica cultivar-group) cDNA... 167 8e-039
dbj|AK102938.1| Oryza sativa (japonica cultivar-group) cDNA... 167 8e-039
gb|AU184627.1|AU184627 AU184627 Rice root Oryza sativa (jap... 105 3e-020
gb|AU173267.1|AU173267 AU173267 Rice root Oryza sativa (jap... 103 1e-019
gb|AACV01023822.1| Oryza sativa (japonica cultivar-group) c... 96 3e-017
gb|CH401271.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 96 3e-017
gb|AC133008.3| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
dbj|AK059667.1| Oryza sativa (japonica cultivar-group) cDNA... 84 1e-013
ref|XM_476351.1| Oryza sativa (japonica cultivar-group), mRNA 84 1e-013
ref|XM_506129.1| PREDICTED Oryza sativa (japonica cultivar-... 84 1e-013
dbj|AK071749.1| Oryza sativa (japonica cultivar-group) cDNA... 76 2e-011
gb|C28642.1|C28642 C28642 Rice callus cDNA Oryza sativa (ja... 68 6e-009
gb|CA999869.1|CA999869 S345R_D12 Rice cold stress germinati... 68 6e-009
dbj|AP005869.3| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|AACV01014992.1| Oryza sativa (japonica cultivar-group) c... 62 4e-007
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 62 4e-007
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
>dbj|AK060049.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H12, full
insert sequence
Length = 1173
Score = 167 bits (84), Expect = 8e-039
Identities = 155/179 (86%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| |||||
Sbjct: 847 ccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggtg 788
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
||| |||||||| ||||| ||||| || ||||| |||| |||||||||||||||||||||
Sbjct: 787 atgatagtcatgaaagtcggagcctccatacagtggcaagaaatttgatgggctccatgg 728
Query: 526 gaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||| | || || ||||||||||||| |||| ||||||||| ||||||||||||||||
Sbjct: 727 gaaatggtatccactgtgagcttcaactgtctccaataccctcaacaccatccacagcc 669
>dbj|AK102938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114J20, full
insert sequence
Length = 1223
Score = 167 bits (84), Expect = 8e-039
Identities = 155/179 (86%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| |||||
Sbjct: 803 ccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggtg 744
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
||| |||||||| ||||| ||||| || ||||| |||| |||||||||||||||||||||
Sbjct: 743 atgatagtcatgaaagtcggagcctccatacagtggcaagaaatttgatgggctccatgg 684
Query: 526 gaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||| | || || ||||||||||||| |||| ||||||||| ||||||||||||||||
Sbjct: 683 gaaatggtatccactgtgagcttcaactgtctccaataccctcaacaccatccacagcc 625
>gb|AU184627.1|AU184627 AU184627 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3165, mRNA sequence
Length = 449
Score = 105 bits (53), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| |||||
Sbjct: 112 ccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggtg 53
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatggg 517
||| |||||||| ||||| ||||| || ||||| |||| |||||||||||||
Sbjct: 52 atgatagtcatgaaagtcggagcctccatacagnggcaagaaatttgatggg 1
>gb|AU173267.1|AU173267 AU173267 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1956, mRNA sequence
Length = 449
Score = 103 bits (52), Expect = 1e-019
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| |||||
Sbjct: 112 ccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggtg 53
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatggg 517
||| |||||||| ||||| ||||| || ||||| |||| |||||||||||||
Sbjct: 52 atgatagtcatgaaagtcggagcctccatacagtggcaagaaatttgatggg 1
>gb|AACV01023822.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023822, whole
genome shotgun sequence
Length = 11245
Score = 95.6 bits (48), Expect = 3e-017
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 494 tacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaaca 553
||||| |||| |||||||||||||||||||||||| | || || |||||||||||||
Sbjct: 8277 tacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagcttcaact 8336
Query: 554 gtcttcaatacccttaacaccatccacagcc 584
|||| ||||||||| ||||||||||||||||
Sbjct: 8337 gtctccaataccctcaacaccatccacagcc 8367
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 402 ctcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactc 461
|||||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| |
Sbjct: 8099 ctcaccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacac 8158
Query: 462 ggtgatggtagtcatggaagtccgagc 488
||||||| |||||||| ||||| ||||
Sbjct: 8159 ggtgatgatagtcatgaaagtcggagc 8185
>gb|CH401271.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000108
genomic scaffold, whole genome shotgun sequence
Length = 327658
Score = 95.6 bits (48), Expect = 3e-017
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 494 tacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaaca 553
||||| |||| |||||||||||||||||||||||| | || || |||||||||||||
Sbjct: 295473 tacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagcttcaact 295532
Query: 554 gtcttcaatacccttaacaccatccacagcc 584
|||| ||||||||| ||||||||||||||||
Sbjct: 295533 gtctccaataccctcaacaccatccacagcc 295563
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 402 ctcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactc 461
|||||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| |
Sbjct: 295295 ctcaccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacac 295354
Query: 462 ggtgatggtagtcatggaagtccgagc 488
||||||| |||||||| ||||| ||||
Sbjct: 295355 ggtgatgatagtcatgaaagtcggagc 295381
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 95.6 bits (48), Expect = 3e-017
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 494 tacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaaca 553
||||| |||| |||||||||||||||||||||||| | || || |||||||||||||
Sbjct: 22561364 tacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagcttcaact 22561423
Query: 554 gtcttcaatacccttaacaccatccacagcc 584
|||| ||||||||| ||||||||||||||||
Sbjct: 22561424 gtctccaataccctcaacaccatccacagcc 22561454
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 402 ctcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactc 461
|||||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| |
Sbjct: 22561186 ctcaccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacac 22561245
Query: 462 ggtgatggtagtcatggaagtccgagc 488
||||||| |||||||| ||||| ||||
Sbjct: 22561246 ggtgatgatagtcatgaaagtcggagc 22561272
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 95.6 bits (48), Expect = 3e-017
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 494 tacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaaca 553
||||| |||| |||||||||||||||||||||||| | || || |||||||||||||
Sbjct: 28323750 tacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagcttcaact 28323809
Query: 554 gtcttcaatacccttaacaccatccacagcc 584
|||| ||||||||| ||||||||||||||||
Sbjct: 28323810 gtctccaataccctcaacaccatccacagcc 28323840
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 402 ctcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactc 461
|||||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| |
Sbjct: 28323572 ctcaccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacac 28323631
Query: 462 ggtgatggtagtcatggaagtccgagc 488
||||||| |||||||| ||||| ||||
Sbjct: 28323632 ggtgatgatagtcatgaaagtcggagc 28323658
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0026K20 map S10559, complete sequence
Length = 115996
Score = 95.6 bits (48), Expect = 3e-017
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 494 tacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaaca 553
||||| |||| |||||||||||||||||||||||| | || || |||||||||||||
Sbjct: 50488 tacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagcttcaact 50547
Query: 554 gtcttcaatacccttaacaccatccacagcc 584
|||| ||||||||| ||||||||||||||||
Sbjct: 50548 gtctccaataccctcaacaccatccacagcc 50578
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 402 ctcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactc 461
|||||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| |
Sbjct: 50310 ctcaccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacac 50369
Query: 462 ggtgatggtagtcatggaagtccgagc 488
||||||| |||||||| ||||| ||||
Sbjct: 50370 ggtgatgatagtcatgaaagtcggagc 50396
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 95.6 bits (48), Expect = 3e-017
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 494 tacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaaca 553
||||| |||| |||||||||||||||||||||||| | || || |||||||||||||
Sbjct: 28306199 tacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagcttcaact 28306258
Query: 554 gtcttcaatacccttaacaccatccacagcc 584
|||| ||||||||| ||||||||||||||||
Sbjct: 28306259 gtctccaataccctcaacaccatccacagcc 28306289
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 402 ctcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactc 461
|||||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| |
Sbjct: 28306021 ctcaccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacac 28306080
Query: 462 ggtgatggtagtcatggaagtccgagc 488
||||||| |||||||| ||||| ||||
Sbjct: 28306081 ggtgatgatagtcatgaaagtcggagc 28306107
>dbj|AK059667.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F03, full
insert sequence
Length = 1146
Score = 83.8 bits (42), Expect = 1e-013
Identities = 119/145 (82%)
Strand = Plus / Minus
Query: 437 ttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccgtac 496
||||| ||||| ||||| || || |||||||| ||||||||||| || | ||| || |||
Sbjct: 766 ttcccagacttggtgtagagaacacggtgatgatagtcatggaattcagcgccgccatac 707
Query: 497 aggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaacagtc 556
| |||| |||||| || ||||||||||||||| | ||||| ||||||| ||||| |||
Sbjct: 706 aatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctcaactgtc 647
Query: 557 ttcaatacccttaacaccatccaca 581
| ||| ||||| || ||||||||||
Sbjct: 646 tccaagaccctcaagaccatccaca 622
>ref|XM_476351.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1146
Score = 83.8 bits (42), Expect = 1e-013
Identities = 119/145 (82%)
Strand = Plus / Minus
Query: 437 ttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccgtac 496
||||| ||||| ||||| || || |||||||| ||||||||||| || | ||| || |||
Sbjct: 766 ttcccagacttggtgtagagaacacggtgatgatagtcatggaattcagcgccgccatac 707
Query: 497 aggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaacagtc 556
| |||| |||||| || ||||||||||||||| | ||||| ||||||| ||||| |||
Sbjct: 706 aatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctcaactgtc 647
Query: 557 ttcaatacccttaacaccatccaca 581
| ||| ||||| || ||||||||||
Sbjct: 646 tccaagaccctcaagaccatccaca 622
>ref|XM_506129.1| PREDICTED Oryza sativa (japonica cultivar-group), B1026C12.22 mRNA
Length = 1337
Score = 83.8 bits (42), Expect = 1e-013
Identities = 119/145 (82%)
Strand = Plus / Minus
Query: 437 ttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccgtac 496
||||| ||||| ||||| || || |||||||| ||||||||||| || | ||| || |||
Sbjct: 765 ttcccagacttggtgtagagaacacggtgatgatagtcatggaattcagcgccgccatac 706
Query: 497 aggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaacagtc 556
| |||| |||||| || ||||||||||||||| | ||||| ||||||| ||||| |||
Sbjct: 705 aatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctcaactgtc 646
Query: 557 ttcaatacccttaacaccatccaca 581
| ||| ||||| || ||||||||||
Sbjct: 645 tccaagaccctcaagaccatccaca 621
>dbj|AK071749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112L07, full
insert sequence
Length = 1337
Score = 75.8 bits (38), Expect = 2e-011
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 461 cggtgatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctc 520
|||||||| ||||||||||| || | ||| || |||| |||| |||||| || ||||||
Sbjct: 741 cggtgatgatagtcatggaattcagcgccgccatacaatggcaagaaattggacgggctc 682
Query: 521 catgggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccac 580
||||||||| | ||||| ||||||| ||||| |||| ||| ||||| || |||||||||
Sbjct: 681 catgggaagtggtagccactgtgagcctcaactgtctccaagaccctcaagaccatccac 622
Query: 581 a 581
|
Sbjct: 621 a 621
>gb|C28642.1|C28642 C28642 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61906_1A, mRNA sequence
Length = 390
Score = 67.9 bits (34), Expect = 6e-009
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 437 ttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccgtac 496
||||| ||||| ||||| || || |||||||| ||||||||||| || | ||| || |||
Sbjct: 123 ttcccagacttggtgtagagaacacggtgatgatagtcatggaattcagcgccgccatac 64
Query: 497 aggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaacagtc 556
| |||| |||||| || ||||||||||||||| | ||||| ||||||| ||||| |||
Sbjct: 63 aatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctcaactgtc 4
Query: 557 t 557
|
Sbjct: 3 t 3
>gb|CA999869.1|CA999869 S345R_D12 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 486
Score = 67.9 bits (34), Expect = 6e-009
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 516 ggctccatgggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacacca 575
||||||||||||| | || || ||||||||||||| |||| ||||||||| |||||||
Sbjct: 486 ggctccatgggaaatggtatccactgtgagcttcaactgtctccaataccctcaacacca 427
Query: 576 tccacagcc 584
|||||||||
Sbjct: 426 tccacagcc 418
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1026C12
Length = 170240
Score = 61.9 bits (31), Expect = 4e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 500 ggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaacagtcttc 559
|||| |||||| || ||||||||||||||| | ||||| ||||||| ||||| |||| |
Sbjct: 88124 ggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctcaactgtctcc 88065
Query: 560 aatacccttaacaccatccaca 581
|| ||||| || ||||||||||
Sbjct: 88064 aagaccctcaagaccatccaca 88043
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 402 ctcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactc 461
|||||||||||||||| | || ||||| | || ||||| ||||| ||||| || || |
Sbjct: 88318 ctcaccagtccatgtagatgaaggtcgacgagtaattcccagacttggtgtagagaacac 88259
Query: 462 ggtgatggtagtcatggaa 480
||||||| |||||||||||
Sbjct: 88258 ggtgatgatagtcatggaa 88240
>gb|AACV01014992.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg014992, whole
genome shotgun sequence
Length = 12136
Score = 61.9 bits (31), Expect = 4e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 500 ggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaacagtcttc 559
|||| |||||| || ||||||||||||||| | ||||| ||||||| ||||| |||| |
Sbjct: 10480 ggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctcaactgtctcc 10421
Query: 560 aatacccttaacaccatccaca 581
|| ||||| || ||||||||||
Sbjct: 10420 aagaccctcaagaccatccaca 10399
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 402 ctcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactc 461
|||||||||||||||| | || ||||| | || ||||| ||||| ||||| || || |
Sbjct: 10674 ctcaccagtccatgtagatgaaggtcgacgagtaattcccagacttggtgtagagaacac 10615
Query: 462 ggtgatggtagtcatggaa 480
||||||| |||||||||||
Sbjct: 10614 ggtgatgatagtcatggaa 10596
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 61.9 bits (31), Expect = 4e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 500 ggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaacagtcttc 559
|||| |||||| || ||||||||||||||| | ||||| ||||||| ||||| |||| |
Sbjct: 88122 ggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctcaactgtctcc 88063
Query: 560 aatacccttaacaccatccaca 581
|| ||||| || ||||||||||
Sbjct: 88062 aagaccctcaagaccatccaca 88041
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 402 ctcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactc 461
|||||||||||||||| | || ||||| | || ||||| ||||| ||||| || || |
Sbjct: 88316 ctcaccagtccatgtagatgaaggtcgacgagtaattcccagacttggtgtagagaacac 88257
Query: 462 ggtgatggtagtcatggaa 480
||||||| |||||||||||
Sbjct: 88256 ggtgatgatagtcatggaa 88238
>gb|CH401218.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000055
genomic scaffold, whole genome shotgun sequence
Length = 1431804
Score = 61.9 bits (31), Expect = 4e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 500 ggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaacagtcttc 559
|||| |||||| || ||||||||||||||| | ||||| ||||||| ||||| |||| |
Sbjct: 80179 ggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctcaactgtctcc 80120
Query: 560 aatacccttaacaccatccaca 581
|| ||||| || ||||||||||
Sbjct: 80119 aagaccctcaagaccatccaca 80098
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 402 ctcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactc 461
|||||||||||||||| | || ||||| | || ||||| ||||| ||||| || || |
Sbjct: 80373 ctcaccagtccatgtagatgaaggtcgacgagtaattcccagacttggtgtagagaacac 80314
Query: 462 ggtgatggtagtcatggaa 480
||||||| |||||||||||
Sbjct: 80313 ggtgatgatagtcatggaa 80295
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome
shotgun sequence
Length = 28626509
Score = 61.9 bits (31), Expect = 4e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 500 ggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaacagtcttc 559
|||| |||||| || ||||||||||||||| | ||||| ||||||| ||||| |||| |
Sbjct: 80179 ggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctcaactgtctcc 80120
Query: 560 aatacccttaacaccatccaca 581
|| ||||| || ||||||||||
Sbjct: 80119 aagaccctcaagaccatccaca 80098
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 402 ctcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactc 461
|||||||||||||||| | || ||||| | || ||||| ||||| ||||| || || |
Sbjct: 80373 ctcaccagtccatgtagatgaaggtcgacgagtaattcccagacttggtgtagagaacac 80314
Query: 462 ggtgatggtagtcatggaa 480
||||||| |||||||||||
Sbjct: 80313 ggtgatgatagtcatggaa 80295
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
complete sequence
Length = 29644043
Score = 61.9 bits (31), Expect = 4e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 500 ggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaacagtcttc 559
|||| |||||| || ||||||||||||||| | ||||| ||||||| ||||| |||| |
Sbjct: 88825 ggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctcaactgtctcc 88766
Query: 560 aatacccttaacaccatccaca 581
|| ||||| || ||||||||||
Sbjct: 88765 aagaccctcaagaccatccaca 88744
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 402 ctcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactc 461
|||||||||||||||| | || ||||| | || ||||| ||||| ||||| || || |
Sbjct: 89019 ctcaccagtccatgtagatgaaggtcgacgagtaattcccagacttggtgtagagaacac 88960
Query: 462 ggtgatggtagtcatggaa 480
||||||| |||||||||||
Sbjct: 88959 ggtgatgatagtcatggaa 88941
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 740,327
Number of Sequences: 438736
Number of extensions: 740327
Number of successful extensions: 17073
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16846
Number of HSP's gapped (non-prelim): 213
length of query: 584
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 563
effective length of database: 2,791,206,460
effective search space: 1571449236980
effective search space used: 1571449236980
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)