BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621786.2.1
(623 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK061097.1| Oryza sativa (japonica cultivar-group) cDNA... 406 e-111
dbj|AK073547.1| Oryza sativa (japonica cultivar-group) cDNA... 406 e-111
dbj|AK106455.1| Oryza sativa (japonica cultivar-group) cDNA... 406 e-111
gb|AACV01012997.1| Oryza sativa (japonica cultivar-group) c... 406 e-111
dbj|AP003708.2| Oryza sativa (japonica cultivar-group) geno... 406 e-111
dbj|AP003526.3| Oryza sativa (japonica cultivar-group) geno... 406 e-111
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 406 e-111
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 406 e-111
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 406 e-111
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 406 e-111
gb|AC104282.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|AC105257.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|AACV01009540.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|NT_079858.2| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
emb|AL662979.3|OSJN00179 Oryza sativa genomic DNA, chromoso... 52 4e-004
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|CB650330.1|CB650330 OSJNEb14L14.f OSJNEb Oryza sativa (j... 44 0.089
>dbj|AK061097.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A06, full
insert sequence
Length = 1574
Score = 406 bits (205), Expect = e-111
Identities = 331/373 (88%)
Strand = Plus / Plus
Query: 6 ccgcccgggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagc 65
||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 824 ccgccagggactggggattcgccggggactacgtcgaggcaatgtggcgcatgctgcagc 883
Query: 66 aggaacagccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcc 125
|||| |||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 884 aggacaagcccggcgactacgtcgtcgccaccgaggagtcccacaccgtcgaggagttcc 943
Query: 126 tgcaggctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaaga 185
| ||||| ||||||||||| || || |||| |||||||||||| || |||||||||||||
Sbjct: 944 tccaggccgccttcggctatgcagggctcaactggaaggatcatgtagtcattgacaaga 1003
Query: 186 agtacttccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaagg 245
|||||||||| || || || || ||||||||| ||||||| || |||||||| |||||||
Sbjct: 1004 agtacttccgccccgccgaggtggacagcctccagggggatgcaaccaaggccaggaagg 1063
Query: 246 tgctcaagtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacg 305
||| ||||||||||||||| ||||||||| ||||||| ||||||||||| ||| |||
Sbjct: 1064 agcttgggtggaagcccaaggtcgggttccagcagctcgtcgagatgatggttgataacg 1123
Query: 306 acattgagctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagc 365
|||||||||| ||||||||||||||||| || || ||||| |||| ||||||||||||||
Sbjct: 1124 acattgagcttgccaagaaggagaaggtcctcgtcgatgccgggtaccgtgatcccaagc 1183
Query: 366 agcagccatagaa 378
|||||||||||||
Sbjct: 1184 agcagccatagaa 1196
>dbj|AK073547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043A08, full
insert sequence
Length = 1434
Score = 406 bits (205), Expect = e-111
Identities = 331/373 (88%)
Strand = Plus / Plus
Query: 6 ccgcccgggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagc 65
||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 824 ccgccagggactggggattcgccggggactacgtcgaggcaatgtggcgcatgctgcagc 883
Query: 66 aggaacagccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcc 125
|||| |||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 884 aggacaagcccggcgactacgtcgtcgccaccgaggagtcccacaccgtcgaggagttcc 943
Query: 126 tgcaggctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaaga 185
| ||||| ||||||||||| || || |||| |||||||||||| || |||||||||||||
Sbjct: 944 tccaggccgccttcggctatgcagggctcaactggaaggatcatgtagtcattgacaaga 1003
Query: 186 agtacttccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaagg 245
|||||||||| || || || || ||||||||| ||||||| || |||||||| |||||||
Sbjct: 1004 agtacttccgccccgccgaggtggacagcctccagggggatgcaaccaaggccaggaagg 1063
Query: 246 tgctcaagtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacg 305
||| ||||||||||||||| ||||||||| ||||||| ||||||||||| ||| |||
Sbjct: 1064 agcttgggtggaagcccaaggtcgggttccagcagctcgtcgagatgatggttgataacg 1123
Query: 306 acattgagctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagc 365
|||||||||| ||||||||||||||||| || || ||||| |||| ||||||||||||||
Sbjct: 1124 acattgagcttgccaagaaggagaaggtcctcgtcgatgccgggtaccgtgatcccaagc 1183
Query: 366 agcagccatagaa 378
|||||||||||||
Sbjct: 1184 agcagccatagaa 1196
>dbj|AK106455.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F11, full
insert sequence
Length = 2411
Score = 406 bits (205), Expect = e-111
Identities = 331/373 (88%)
Strand = Plus / Plus
Query: 6 ccgcccgggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagc 65
||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 677 ccgccagggactggggattcgccggggactacgtcgaggcaatgtggcgcatgctgcagc 736
Query: 66 aggaacagccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcc 125
|||| |||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 737 aggacaagcccggcgactacgtcgtcgccaccgaggagtcccacaccgtcgaggagttcc 796
Query: 126 tgcaggctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaaga 185
| ||||| ||||||||||| || || |||| |||||||||||| || |||||||||||||
Sbjct: 797 tccaggccgccttcggctatgcagggctcaactggaaggatcatgtagtcattgacaaga 856
Query: 186 agtacttccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaagg 245
|||||||||| || || || || ||||||||| ||||||| || |||||||| |||||||
Sbjct: 857 agtacttccgccccgccgaggtggacagcctccagggggatgcaaccaaggccaggaagg 916
Query: 246 tgctcaagtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacg 305
||| ||||||||||||||| ||||||||| ||||||| ||||||||||| ||| |||
Sbjct: 917 agcttgggtggaagcccaaggtcgggttccagcagctcgtcgagatgatggttgataacg 976
Query: 306 acattgagctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagc 365
|||||||||| ||||||||||||||||| || || ||||| |||| ||||||||||||||
Sbjct: 977 acattgagcttgccaagaaggagaaggtcctcgtcgatgccgggtaccgtgatcccaagc 1036
Query: 366 agcagccatagaa 378
|||||||||||||
Sbjct: 1037 agcagccatagaa 1049
>gb|AACV01012997.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012997, whole
genome shotgun sequence
Length = 13191
Score = 406 bits (205), Expect = e-111
Identities = 331/373 (88%)
Strand = Plus / Plus
Query: 6 ccgcccgggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagc 65
||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 1641 ccgccagggactggggattcgccggggactacgtcgaggcaatgtggcgcatgctgcagc 1700
Query: 66 aggaacagccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcc 125
|||| |||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1701 aggacaagcccggcgactacgtcgtcgccaccgaggagtcccacaccgtcgaggagttcc 1760
Query: 126 tgcaggctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaaga 185
| ||||| ||||||||||| || || |||| |||||||||||| || |||||||||||||
Sbjct: 1761 tccaggccgccttcggctatgcagggctcaactggaaggatcatgtagtcattgacaaga 1820
Query: 186 agtacttccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaagg 245
|||||||||| || || || || ||||||||| ||||||| || |||||||| |||||||
Sbjct: 1821 agtacttccgccccgccgaggtggacagcctccagggggatgcaaccaaggccaggaagg 1880
Query: 246 tgctcaagtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacg 305
||| ||||||||||||||| ||||||||| ||||||| ||||||||||| ||| |||
Sbjct: 1881 agcttgggtggaagcccaaggtcgggttccagcagctcgtcgagatgatggttgataacg 1940
Query: 306 acattgagctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagc 365
|||||||||| ||||||||||||||||| || || ||||| |||| ||||||||||||||
Sbjct: 1941 acattgagcttgccaagaaggagaaggtcctcgtcgatgccgggtaccgtgatcccaagc 2000
Query: 366 agcagccatagaa 378
|||||||||||||
Sbjct: 2001 agcagccatagaa 2013
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0041F13
Length = 163230
Score = 406 bits (205), Expect = e-111
Identities = 331/373 (88%)
Strand = Plus / Plus
Query: 6 ccgcccgggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagc 65
||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 38455 ccgccagggactggggattcgccggggactacgtcgaggcaatgtggcgcatgctgcagc 38514
Query: 66 aggaacagccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcc 125
|||| |||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 38515 aggacaagcccggcgactacgtcgtcgccaccgaggagtcccacaccgtcgaggagttcc 38574
Query: 126 tgcaggctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaaga 185
| ||||| ||||||||||| || || |||| |||||||||||| || |||||||||||||
Sbjct: 38575 tccaggccgccttcggctatgcagggctcaactggaaggatcatgtagtcattgacaaga 38634
Query: 186 agtacttccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaagg 245
|||||||||| || || || || ||||||||| ||||||| || |||||||| |||||||
Sbjct: 38635 agtacttccgccccgccgaggtggacagcctccagggggatgcaaccaaggccaggaagg 38694
Query: 246 tgctcaagtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacg 305
||| ||||||||||||||| ||||||||| ||||||| ||||||||||| ||| |||
Sbjct: 38695 agcttgggtggaagcccaaggtcgggttccagcagctcgtcgagatgatggttgataacg 38754
Query: 306 acattgagctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagc 365
|||||||||| ||||||||||||||||| || || ||||| |||| ||||||||||||||
Sbjct: 38755 acattgagcttgccaagaaggagaaggtcctcgtcgatgccgggtaccgtgatcccaagc 38814
Query: 366 agcagccatagaa 378
|||||||||||||
Sbjct: 38815 agcagccatagaa 38827
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0548D03
Length = 156709
Score = 406 bits (205), Expect = e-111
Identities = 331/373 (88%)
Strand = Plus / Plus
Query: 6 ccgcccgggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagc 65
||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 146373 ccgccagggactggggattcgccggggactacgtcgaggcaatgtggcgcatgctgcagc 146432
Query: 66 aggaacagccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcc 125
|||| |||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 146433 aggacaagcccggcgactacgtcgtcgccaccgaggagtcccacaccgtcgaggagttcc 146492
Query: 126 tgcaggctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaaga 185
| ||||| ||||||||||| || || |||| |||||||||||| || |||||||||||||
Sbjct: 146493 tccaggccgccttcggctatgcagggctcaactggaaggatcatgtagtcattgacaaga 146552
Query: 186 agtacttccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaagg 245
|||||||||| || || || || ||||||||| ||||||| || |||||||| |||||||
Sbjct: 146553 agtacttccgccccgccgaggtggacagcctccagggggatgcaaccaaggccaggaagg 146612
Query: 246 tgctcaagtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacg 305
||| ||||||||||||||| ||||||||| ||||||| ||||||||||| ||| |||
Sbjct: 146613 agcttgggtggaagcccaaggtcgggttccagcagctcgtcgagatgatggttgataacg 146672
Query: 306 acattgagctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagc 365
|||||||||| ||||||||||||||||| || || ||||| |||| ||||||||||||||
Sbjct: 146673 acattgagcttgccaagaaggagaaggtcctcgtcgatgccgggtaccgtgatcccaagc 146732
Query: 366 agcagccatagaa 378
|||||||||||||
Sbjct: 146733 agcagccatagaa 146745
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 406 bits (205), Expect = e-111
Identities = 331/373 (88%)
Strand = Plus / Plus
Query: 6 ccgcccgggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagc 65
||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 1981170 ccgccagggactggggattcgccggggactacgtcgaggcaatgtggcgcatgctgcagc 1981229
Query: 66 aggaacagccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcc 125
|||| |||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1981230 aggacaagcccggcgactacgtcgtcgccaccgaggagtcccacaccgtcgaggagttcc 1981289
Query: 126 tgcaggctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaaga 185
| ||||| ||||||||||| || || |||| |||||||||||| || |||||||||||||
Sbjct: 1981290 tccaggccgccttcggctatgcagggctcaactggaaggatcatgtagtcattgacaaga 1981349
Query: 186 agtacttccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaagg 245
|||||||||| || || || || ||||||||| ||||||| || |||||||| |||||||
Sbjct: 1981350 agtacttccgccccgccgaggtggacagcctccagggggatgcaaccaaggccaggaagg 1981409
Query: 246 tgctcaagtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacg 305
||| ||||||||||||||| ||||||||| ||||||| ||||||||||| ||| |||
Sbjct: 1981410 agcttgggtggaagcccaaggtcgggttccagcagctcgtcgagatgatggttgataacg 1981469
Query: 306 acattgagctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagc 365
|||||||||| ||||||||||||||||| || || ||||| |||| ||||||||||||||
Sbjct: 1981470 acattgagcttgccaagaaggagaaggtcctcgtcgatgccgggtaccgtgatcccaagc 1981529
Query: 366 agcagccatagaa 378
|||||||||||||
Sbjct: 1981530 agcagccatagaa 1981542
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 406 bits (205), Expect = e-111
Identities = 331/373 (88%)
Strand = Plus / Plus
Query: 6 ccgcccgggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagc 65
||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 1959277 ccgccagggactggggattcgccggggactacgtcgaggcaatgtggcgcatgctgcagc 1959336
Query: 66 aggaacagccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcc 125
|||| |||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1959337 aggacaagcccggcgactacgtcgtcgccaccgaggagtcccacaccgtcgaggagttcc 1959396
Query: 126 tgcaggctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaaga 185
| ||||| ||||||||||| || || |||| |||||||||||| || |||||||||||||
Sbjct: 1959397 tccaggccgccttcggctatgcagggctcaactggaaggatcatgtagtcattgacaaga 1959456
Query: 186 agtacttccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaagg 245
|||||||||| || || || || ||||||||| ||||||| || |||||||| |||||||
Sbjct: 1959457 agtacttccgccccgccgaggtggacagcctccagggggatgcaaccaaggccaggaagg 1959516
Query: 246 tgctcaagtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacg 305
||| ||||||||||||||| ||||||||| ||||||| ||||||||||| ||| |||
Sbjct: 1959517 agcttgggtggaagcccaaggtcgggttccagcagctcgtcgagatgatggttgataacg 1959576
Query: 306 acattgagctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagc 365
|||||||||| ||||||||||||||||| || || ||||| |||| ||||||||||||||
Sbjct: 1959577 acattgagcttgccaagaaggagaaggtcctcgtcgatgccgggtaccgtgatcccaagc 1959636
Query: 366 agcagccatagaa 378
|||||||||||||
Sbjct: 1959637 agcagccatagaa 1959649
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 406 bits (205), Expect = e-111
Identities = 331/373 (88%)
Strand = Plus / Plus
Query: 6 ccgcccgggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagc 65
||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 1959277 ccgccagggactggggattcgccggggactacgtcgaggcaatgtggcgcatgctgcagc 1959336
Query: 66 aggaacagccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcc 125
|||| |||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1959337 aggacaagcccggcgactacgtcgtcgccaccgaggagtcccacaccgtcgaggagttcc 1959396
Query: 126 tgcaggctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaaga 185
| ||||| ||||||||||| || || |||| |||||||||||| || |||||||||||||
Sbjct: 1959397 tccaggccgccttcggctatgcagggctcaactggaaggatcatgtagtcattgacaaga 1959456
Query: 186 agtacttccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaagg 245
|||||||||| || || || || ||||||||| ||||||| || |||||||| |||||||
Sbjct: 1959457 agtacttccgccccgccgaggtggacagcctccagggggatgcaaccaaggccaggaagg 1959516
Query: 246 tgctcaagtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacg 305
||| ||||||||||||||| ||||||||| ||||||| ||||||||||| ||| |||
Sbjct: 1959517 agcttgggtggaagcccaaggtcgggttccagcagctcgtcgagatgatggttgataacg 1959576
Query: 306 acattgagctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagc 365
|||||||||| ||||||||||||||||| || || ||||| |||| ||||||||||||||
Sbjct: 1959577 acattgagcttgccaagaaggagaaggtcctcgtcgatgccgggtaccgtgatcccaagc 1959636
Query: 366 agcagccatagaa 378
|||||||||||||
Sbjct: 1959637 agcagccatagaa 1959649
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 406 bits (205), Expect = e-111
Identities = 331/373 (88%)
Strand = Plus / Plus
Query: 6 ccgcccgggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagc 65
||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 2017593 ccgccagggactggggattcgccggggactacgtcgaggcaatgtggcgcatgctgcagc 2017652
Query: 66 aggaacagccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcc 125
|||| |||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2017653 aggacaagcccggcgactacgtcgtcgccaccgaggagtcccacaccgtcgaggagttcc 2017712
Query: 126 tgcaggctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaaga 185
| ||||| ||||||||||| || || |||| |||||||||||| || |||||||||||||
Sbjct: 2017713 tccaggccgccttcggctatgcagggctcaactggaaggatcatgtagtcattgacaaga 2017772
Query: 186 agtacttccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaagg 245
|||||||||| || || || || ||||||||| ||||||| || |||||||| |||||||
Sbjct: 2017773 agtacttccgccccgccgaggtggacagcctccagggggatgcaaccaaggccaggaagg 2017832
Query: 246 tgctcaagtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacg 305
||| ||||||||||||||| ||||||||| ||||||| ||||||||||| ||| |||
Sbjct: 2017833 agcttgggtggaagcccaaggtcgggttccagcagctcgtcgagatgatggttgataacg 2017892
Query: 306 acattgagctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagc 365
|||||||||| ||||||||||||||||| || || ||||| |||| ||||||||||||||
Sbjct: 2017893 acattgagcttgccaagaaggagaaggtcctcgtcgatgccgggtaccgtgatcccaagc 2017952
Query: 366 agcagccatagaa 378
|||||||||||||
Sbjct: 2017953 agcagccatagaa 2017965
>gb|AC104282.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1574_B04,
*** SEQUENCING IN PROGRESS ***, 6 ordered pieces
Length = 113687
Score = 52.0 bits (26), Expect = 4e-004
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 29 ggggactacgtcgaggcaatgtggctcatgctgcagcaggaacagccgggggattacgtc 88
|||||||| ||| | |||||||||| ||| || ||||||| |||| | || ||||||
Sbjct: 22500 ggggactaagtcaaagcaatgtggcatatgttgtagcaggaccagcacagcgactacgtc 22559
Query: 89 gtcgccactgaggagtcccacaccgtcgaggagttcct 126
|| ||||| ||||||||||||||||| |||| |||||
Sbjct: 22560 gtagccaccaaggagtcccacaccgtcaaggaattcct 22597
>gb|AC105257.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1008_D04,
*** SEQUENCING IN PROGRESS ***, 5 ordered pieces
Length = 126891
Score = 52.0 bits (26), Expect = 4e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 29 ggggactacgtcgaggcaatgtggctcatgctgcagcaggaacagccgggggattacgtc 88
|||||||| ||| | |||||||||| ||| || ||||||| |||| | || ||||||
Sbjct: 4875 ggggactaagtcaaagcaatgtggcatatgttgtagcaggaccagcacagcgactacgtc 4816
Query: 89 gtcgccactgaggagtcccacaccgtcgaggagttcct 126
|| ||||| ||||||||||||||||| |||| |||||
Sbjct: 4815 gtagccaccaaggagtcccacaccgtcaaggaattcct 4778
>gb|AACV01009540.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009540, whole
genome shotgun sequence
Length = 59959
Score = 52.0 bits (26), Expect = 4e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 29 ggggactacgtcgaggcaatgtggctcatgctgcagcaggaacagccgggggattacgtc 88
|||||||| ||| | |||||||||| ||| || ||||||| |||| | || ||||||
Sbjct: 3674 ggggactaagtcaaagcaatgtggcatatgttgtagcaggaccagcacagcgactacgtc 3615
Query: 89 gtcgccactgaggagtcccacaccgtcgaggagttcct 126
|| ||||| ||||||||||||||||| |||| |||||
Sbjct: 3614 gtagccaccaaggagtcccacaccgtcaaggaattcct 3577
>ref|NT_079858.2| Oryza sativa (japonica cultivar-group)
Length = 2468003
Score = 52.0 bits (26), Expect = 4e-004
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 29 ggggactacgtcgaggcaatgtggctcatgctgcagcaggaacagccgggggattacgtc 88
|||||||| ||| | |||||||||| ||| || ||||||| |||| | || ||||||
Sbjct: 1515476 ggggactaagtcaaagcaatgtggcatatgttgtagcaggaccagcacagcgactacgtc 1515535
Query: 89 gtcgccactgaggagtcccacaccgtcgaggagttcct 126
|| ||||| ||||||||||||||||| |||| |||||
Sbjct: 1515536 gtagccaccaaggagtcccacaccgtcaaggaattcct 1515573
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 52.0 bits (26), Expect = 4e-004
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 29 ggggactacgtcgaggcaatgtggctcatgctgcagcaggaacagccgggggattacgtc 88
|||||||| ||| | |||||||||| ||| || ||||||| |||| | || ||||||
Sbjct: 7946217 ggggactaagtcaaagcaatgtggcatatgttgtagcaggaccagcacagcgactacgtc 7946276
Query: 89 gtcgccactgaggagtcccacaccgtcgaggagttcct 126
|| ||||| ||||||||||||||||| |||| |||||
Sbjct: 7946277 gtagccaccaaggagtcccacaccgtcaaggaattcct 7946314
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 52.0 bits (26), Expect = 4e-004
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 29 ggggactacgtcgaggcaatgtggctcatgctgcagcaggaacagccgggggattacgtc 88
|||||||| ||| | |||||||||| ||| || ||||||| |||| | || ||||||
Sbjct: 15293579 ggggactaagtcaaagcaatgtggcatatgttgtagcaggaccagcacagcgactacgtc 15293638
Query: 89 gtcgccactgaggagtcccacaccgtcgaggagttcct 126
|| ||||| ||||||||||||||||| |||| |||||
Sbjct: 15293639 gtagccaccaaggagtcccacaccgtcaaggaattcct 15293676
>emb|AL662979.3|OSJN00179 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0069D17,
complete sequence
Length = 147111
Score = 52.0 bits (26), Expect = 4e-004
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 29 ggggactacgtcgaggcaatgtggctcatgctgcagcaggaacagccgggggattacgtc 88
|||||||| ||| | |||||||||| ||| || ||||||| |||| | || ||||||
Sbjct: 100862 ggggactaagtcaaagcaatgtggcatatgttgtagcaggaccagcacagcgactacgtc 100921
Query: 89 gtcgccactgaggagtcccacaccgtcgaggagttcct 126
|| ||||| ||||||||||||||||| |||| |||||
Sbjct: 100922 gtagccaccaaggagtcccacaccgtcaaggaattcct 100959
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 52.0 bits (26), Expect = 4e-004
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 29 ggggactacgtcgaggcaatgtggctcatgctgcagcaggaacagccgggggattacgtc 88
|||||||| ||| | |||||||||| ||| || ||||||| |||| | || ||||||
Sbjct: 18265188 ggggactaagtcaaagcaatgtggcatatgttgtagcaggaccagcacagcgactacgtc 18265247
Query: 89 gtcgccactgaggagtcccacaccgtcgaggagttcct 126
|| ||||| ||||||||||||||||| |||| |||||
Sbjct: 18265248 gtagccaccaaggagtcccacaccgtcaaggaattcct 18265285
>gb|CB650330.1|CB650330 OSJNEb14L14.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14L14 5', mRNA sequence
Length = 567
Score = 44.1 bits (22), Expect = 0.089
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 235 ggcgaggaaggtgctcaagtgg 256
||||||||||||||||||||||
Sbjct: 474 ggcgaggaaggtgctcaagtgg 495
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 802,220
Number of Sequences: 438736
Number of extensions: 802220
Number of successful extensions: 4503
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4428
Number of HSP's gapped (non-prelim): 75
length of query: 623
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 602
effective length of database: 2,791,206,460
effective search space: 1680306288920
effective search space used: 1680306288920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)