BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619146.2.1
(636 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK102183.1| Oryza sativa (japonica cultivar-group) cDNA... 157 9e-036
dbj|AK058915.1| Oryza sativa (japonica cultivar-group) cDNA... 149 2e-033
emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC O... 117 8e-024
emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Parti... 117 8e-024
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 117 8e-024
gb|AACV01025516.1| Oryza sativa (japonica cultivar-group) c... 117 8e-024
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 117 8e-024
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 117 8e-024
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 117 8e-024
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 117 8e-024
dbj|AK060584.1| Oryza sativa (japonica cultivar-group) cDNA... 113 1e-022
dbj|AK101425.1| Oryza sativa (japonica cultivar-group) cDNA... 113 1e-022
dbj|AK103284.1| Oryza sativa (japonica cultivar-group) cDNA... 113 1e-022
gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic ... 101 4e-019
gb|AACV01007440.1| Oryza sativa (japonica cultivar-group) c... 101 4e-019
ref|NT_079918.2| Oryza sativa (japonica cultivar-group) 101 4e-019
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 101 4e-019
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 101 4e-019
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 101 4e-019
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 101 4e-019
dbj|AK058416.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-010
gb|AU173356.1|AU173356 AU173356 Rice root Oryza sativa (jap... 60 2e-006
dbj|AK112091.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
gb|AACV01000373.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
ref|NM_188279.1| Oryza sativa (japonica cultivar-group), p... 60 2e-006
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 60 2e-006
dbj|AP003197.4| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|CB654750.1|CB654750 OSJNEc07I06.r OSJNEc Oryza sativa (j... 52 4e-004
>dbj|AK102183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086M14, full
insert sequence
Length = 3140
Score = 157 bits (79), Expect = 9e-036
Identities = 226/275 (82%)
Strand = Plus / Minus
Query: 312 atgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccacc 371
||||||||||||||| ||||||||| || ||||| ||||| ||| ||||||||| |
Sbjct: 2836 atgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgctaaga 2777
Query: 372 accttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacg 431
|||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||
Sbjct: 2776 accttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgacttgcagacg 2717
Query: 432 ccaccggggaggtacgccaggccctgctgcatgatcgcggggagctgcgcggacagggcc 491
|| || ||||| || | | ||||||||||||||| ||||| || || | |||| |||
Sbjct: 2716 cctccagggagataggtgaaaccctgctgcatgatcttggggaactccgagcacagcgcc 2657
Query: 492 ttctggccctcctcgtcgaggaccgcctccagcggcaggtcctggatgttcaccatcgtc 551
||| ||||||| || || |||| | ||| |||| | |||||||| ||| |||| ||||
Sbjct: 2656 ttccggccctcgtcatccaggatcatctcgagcgagatgtcctggaggttgaccagcgtc 2597
Query: 552 gtctccaggatgtcgaagccggcgctgttggcgaa 586
||||| |||||||||| |||||| ||||||||||
Sbjct: 2596 gtctcaaggatgtcgaggccggcattgttggcgaa 2562
>dbj|AK058915.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-A07, full
insert sequence
Length = 1011
Score = 149 bits (75), Expect = 2e-033
Identities = 225/275 (81%)
Strand = Plus / Minus
Query: 312 atgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccacc 371
||||||||||||||| ||||||||| || ||||| ||||| ||| ||||||||| |
Sbjct: 758 atgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgctaaga 699
Query: 372 accttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacg 431
|||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||
Sbjct: 698 accttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgacttgcagacg 639
Query: 432 ccaccggggaggtacgccaggccctgctgcatgatcgcggggagctgcgcggacagggcc 491
|| || ||||| || | | ||||||||||||||| ||||| || || | |||| | |
Sbjct: 638 cctccagggagataggtgaaaccctgctgcatgatcttggggaactccgagcacagcgtc 579
Query: 492 ttctggccctcctcgtcgaggaccgcctccagcggcaggtcctggatgttcaccatcgtc 551
||| ||||||| || || |||| | ||| |||| | |||||||| ||| |||| ||||
Sbjct: 578 ttccggccctcgtcatccaggatcatctcgagcgagatgtcctggaggttgaccagcgtc 519
Query: 552 gtctccaggatgtcgaagccggcgctgttggcgaa 586
||||| |||||||||| |||||| ||||||||||
Sbjct: 518 gtctcaaggatgtcgaggccggcattgttggcgaa 484
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 161806
Score = 117 bits (59), Expect = 8e-024
Identities = 113/131 (86%)
Strand = Plus / Minus
Query: 312 atgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccacc 371
||||||||||||||| ||||||||| || ||||| ||||| ||| ||||||||| |
Sbjct: 157159 atgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgctaaga 157100
Query: 372 accttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacg 431
|||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||
Sbjct: 157099 accttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgacttgcagacg 157040
Query: 432 ccaccggggag 442
|| || |||||
Sbjct: 157039 cctccagggag 157029
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Minus
Query: 454 cctgctgcatgatcgcggggagctgcgcggacagggccttctggccctcctcgtcgagga 513
|||||||||||||| ||||| || || | |||| |||||| ||||||| || || ||||
Sbjct: 156901 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 156842
Query: 514 ccgcctccagcggcaggtcctggatgttcaccatcgtcgtctccaggatgtcgaagccgg 573
| ||| |||| | |||||||| ||| |||| ||||||||| |||||||||| |||||
Sbjct: 156841 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 156782
Query: 574 cgctgttggcgaa 586
| ||||||||||
Sbjct: 156781 cattgttggcgaa 156769
>emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Partial sequence from BAC OJ1257_B09 of
library Monsanto from chromosome 12 of cultivar Nipponbare
of ssp. japonica of Oryza sativa (rice), complete sequence
Length = 61296
Score = 117 bits (59), Expect = 8e-024
Identities = 113/131 (86%)
Strand = Plus / Minus
Query: 312 atgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccacc 371
||||||||||||||| ||||||||| || ||||| ||||| ||| ||||||||| |
Sbjct: 20779 atgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgctaaga 20720
Query: 372 accttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacg 431
|||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||
Sbjct: 20719 accttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgacttgcagacg 20660
Query: 432 ccaccggggag 442
|| || |||||
Sbjct: 20659 cctccagggag 20649
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Minus
Query: 454 cctgctgcatgatcgcggggagctgcgcggacagggccttctggccctcctcgtcgagga 513
|||||||||||||| ||||| || || | |||| |||||| ||||||| || || ||||
Sbjct: 20521 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 20462
Query: 514 ccgcctccagcggcaggtcctggatgttcaccatcgtcgtctccaggatgtcgaagccgg 573
| ||| |||| | |||||||| ||| |||| ||||||||| |||||||||| |||||
Sbjct: 20461 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 20402
Query: 574 cgctgttggcgaa 586
| ||||||||||
Sbjct: 20401 cattgttggcgaa 20389
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 117 bits (59), Expect = 8e-024
Identities = 113/131 (86%)
Strand = Plus / Plus
Query: 312 atgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccacc 371
||||||||||||||| ||||||||| || ||||| ||||| ||| ||||||||| |
Sbjct: 2126108 atgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgctaaga 2126167
Query: 372 accttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacg 431
|||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||
Sbjct: 2126168 accttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgacttgcagacg 2126227
Query: 432 ccaccggggag 442
|| || |||||
Sbjct: 2126228 cctccagggag 2126238
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Plus
Query: 454 cctgctgcatgatcgcggggagctgcgcggacagggccttctggccctcctcgtcgagga 513
|||||||||||||| ||||| || || | |||| |||||| ||||||| || || ||||
Sbjct: 2126366 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 2126425
Query: 514 ccgcctccagcggcaggtcctggatgttcaccatcgtcgtctccaggatgtcgaagccgg 573
| ||| |||| | |||||||| ||| |||| ||||||||| |||||||||| |||||
Sbjct: 2126426 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 2126485
Query: 574 cgctgttggcgaa 586
| ||||||||||
Sbjct: 2126486 cattgttggcgaa 2126498
>gb|AACV01025516.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025516, whole
genome shotgun sequence
Length = 38783
Score = 117 bits (59), Expect = 8e-024
Identities = 113/131 (86%)
Strand = Plus / Minus
Query: 312 atgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccacc 371
||||||||||||||| ||||||||| || ||||| ||||| ||| ||||||||| |
Sbjct: 24842 atgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgctaaga 24783
Query: 372 accttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacg 431
|||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||
Sbjct: 24782 accttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgacttgcagacg 24723
Query: 432 ccaccggggag 442
|| || |||||
Sbjct: 24722 cctccagggag 24712
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Minus
Query: 454 cctgctgcatgatcgcggggagctgcgcggacagggccttctggccctcctcgtcgagga 513
|||||||||||||| ||||| || || | |||| |||||| ||||||| || || ||||
Sbjct: 24584 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 24525
Query: 514 ccgcctccagcggcaggtcctggatgttcaccatcgtcgtctccaggatgtcgaagccgg 573
| ||| |||| | |||||||| ||| |||| ||||||||| |||||||||| |||||
Sbjct: 24524 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 24465
Query: 574 cgctgttggcgaa 586
| ||||||||||
Sbjct: 24464 cattgttggcgaa 24452
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 117 bits (59), Expect = 8e-024
Identities = 113/131 (86%)
Strand = Plus / Plus
Query: 312 atgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccacc 371
||||||||||||||| ||||||||| || ||||| ||||| ||| ||||||||| |
Sbjct: 2976825 atgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgctaaga 2976884
Query: 372 accttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacg 431
|||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||
Sbjct: 2976885 accttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgacttgcagacg 2976944
Query: 432 ccaccggggag 442
|| || |||||
Sbjct: 2976945 cctccagggag 2976955
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Plus
Query: 454 cctgctgcatgatcgcggggagctgcgcggacagggccttctggccctcctcgtcgagga 513
|||||||||||||| ||||| || || | |||| |||||| ||||||| || || ||||
Sbjct: 2977083 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 2977142
Query: 514 ccgcctccagcggcaggtcctggatgttcaccatcgtcgtctccaggatgtcgaagccgg 573
| ||| |||| | |||||||| ||| |||| ||||||||| |||||||||| |||||
Sbjct: 2977143 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 2977202
Query: 574 cgctgttggcgaa 586
| ||||||||||
Sbjct: 2977203 cattgttggcgaa 2977215
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 117 bits (59), Expect = 8e-024
Identities = 113/131 (86%)
Strand = Plus / Plus
Query: 312 atgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccacc 371
||||||||||||||| ||||||||| || ||||| ||||| ||| ||||||||| |
Sbjct: 22160471 atgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgctaaga 22160530
Query: 372 accttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacg 431
|||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||
Sbjct: 22160531 accttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgacttgcagacg 22160590
Query: 432 ccaccggggag 442
|| || |||||
Sbjct: 22160591 cctccagggag 22160601
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Plus
Query: 454 cctgctgcatgatcgcggggagctgcgcggacagggccttctggccctcctcgtcgagga 513
|||||||||||||| ||||| || || | |||| |||||| ||||||| || || ||||
Sbjct: 22160729 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 22160788
Query: 514 ccgcctccagcggcaggtcctggatgttcaccatcgtcgtctccaggatgtcgaagccgg 573
| ||| |||| | |||||||| ||| |||| ||||||||| |||||||||| |||||
Sbjct: 22160789 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 22160848
Query: 574 cgctgttggcgaa 586
| ||||||||||
Sbjct: 22160849 cattgttggcgaa 22160861
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 117 bits (59), Expect = 8e-024
Identities = 113/131 (86%)
Strand = Plus / Plus
Query: 312 atgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccacc 371
||||||||||||||| ||||||||| || ||||| ||||| ||| ||||||||| |
Sbjct: 25954510 atgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgctaaga 25954569
Query: 372 accttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacg 431
|||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||
Sbjct: 25954570 accttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgacttgcagacg 25954629
Query: 432 ccaccggggag 442
|| || |||||
Sbjct: 25954630 cctccagggag 25954640
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Plus
Query: 454 cctgctgcatgatcgcggggagctgcgcggacagggccttctggccctcctcgtcgagga 513
|||||||||||||| ||||| || || | |||| |||||| ||||||| || || ||||
Sbjct: 25954768 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 25954827
Query: 514 ccgcctccagcggcaggtcctggatgttcaccatcgtcgtctccaggatgtcgaagccgg 573
| ||| |||| | |||||||| ||| |||| ||||||||| |||||||||| |||||
Sbjct: 25954828 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 25954887
Query: 574 cgctgttggcgaa 586
| ||||||||||
Sbjct: 25954888 cattgttggcgaa 25954900
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 117 bits (59), Expect = 8e-024
Identities = 113/131 (86%)
Strand = Plus / Plus
Query: 312 atgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccacc 371
||||||||||||||| ||||||||| || ||||| ||||| ||| ||||||||| |
Sbjct: 25882688 atgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgctaaga 25882747
Query: 372 accttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacg 431
|||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||
Sbjct: 25882748 accttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgacttgcagacg 25882807
Query: 432 ccaccggggag 442
|| || |||||
Sbjct: 25882808 cctccagggag 25882818
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Plus
Query: 454 cctgctgcatgatcgcggggagctgcgcggacagggccttctggccctcctcgtcgagga 513
|||||||||||||| ||||| || || | |||| |||||| ||||||| || || ||||
Sbjct: 25882946 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 25883005
Query: 514 ccgcctccagcggcaggtcctggatgttcaccatcgtcgtctccaggatgtcgaagccgg 573
| ||| |||| | |||||||| ||| |||| ||||||||| |||||||||| |||||
Sbjct: 25883006 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 25883065
Query: 574 cgctgttggcgaa 586
| ||||||||||
Sbjct: 25883066 cattgttggcgaa 25883078
>dbj|AK060584.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H08, full
insert sequence
Length = 1875
Score = 113 bits (57), Expect = 1e-022
Identities = 135/161 (83%)
Strand = Plus / Minus
Query: 307 ctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgc 366
|||||| ||| | ||||||| ||| ||||| || ||||| ||||| | | |||||||||
Sbjct: 1712 ctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcgtcgc 1653
Query: 367 ccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgc 426
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct: 1652 tcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgc 1593
Query: 427 acacgccaccggggaggtacgccaggccctgctgcatgatc 467
||||||| || |||||||| || | |||||||||||||||
Sbjct: 1592 acacgccgcccgggaggtaggcgaaaccctgctgcatgatc 1552
>dbj|AK101425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038E17, full
insert sequence
Length = 1165
Score = 113 bits (57), Expect = 1e-022
Identities = 135/161 (83%)
Strand = Plus / Minus
Query: 307 ctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgc 366
|||||| ||| | ||||||| ||| ||||| || ||||| ||||| | | |||||||||
Sbjct: 1027 ctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcgtcgc 968
Query: 367 ccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgc 426
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct: 967 tcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgc 908
Query: 427 acacgccaccggggaggtacgccaggccctgctgcatgatc 467
||||||| || |||||||| || | |||||||||||||||
Sbjct: 907 acacgccgcccgggaggtaggcgaaaccctgctgcatgatc 867
>dbj|AK103284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124M18, full
insert sequence
Length = 3082
Score = 113 bits (57), Expect = 1e-022
Identities = 135/161 (83%)
Strand = Plus / Minus
Query: 307 ctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgc 366
|||||| ||| | ||||||| ||| ||||| || ||||| ||||| | | |||||||||
Sbjct: 2926 ctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcgtcgc 2867
Query: 367 ccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgc 426
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct: 2866 tcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgc 2807
Query: 427 acacgccaccggggaggtacgccaggccctgctgcatgatc 467
||||||| || |||||||| || | |||||||||||||||
Sbjct: 2806 acacgccgcccgggaggtaggcgaaaccctgctgcatgatc 2766
>gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic sequence, complete sequence
Length = 175704
Score = 101 bits (51), Expect = 4e-019
Identities = 117/139 (84%)
Strand = Plus / Minus
Query: 307 ctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgc 366
|||||| ||| | ||||||| ||| ||||| || ||||| ||||| | | |||||||||
Sbjct: 96407 ctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcgtcgc 96348
Query: 367 ccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgc 426
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct: 96347 tcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgc 96288
Query: 427 acacgccaccggggaggta 445
||||||| || ||||||||
Sbjct: 96287 acacgccgcccgggaggta 96269
>gb|AACV01007440.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007440, whole
genome shotgun sequence
Length = 11259
Score = 101 bits (51), Expect = 4e-019
Identities = 117/139 (84%)
Strand = Plus / Minus
Query: 307 ctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgc 366
|||||| ||| | ||||||| ||| ||||| || ||||| ||||| | | |||||||||
Sbjct: 5132 ctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcgtcgc 5073
Query: 367 ccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgc 426
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct: 5072 tcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgc 5013
Query: 427 acacgccaccggggaggta 445
||||||| || ||||||||
Sbjct: 5012 acacgccgcccgggaggta 4994
>ref|NT_079918.2| Oryza sativa (japonica cultivar-group)
Length = 553008
Score = 101 bits (51), Expect = 4e-019
Identities = 117/139 (84%)
Strand = Plus / Plus
Query: 307 ctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgc 366
|||||| ||| | ||||||| ||| ||||| || ||||| ||||| | | |||||||||
Sbjct: 456602 ctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcgtcgc 456661
Query: 367 ccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgc 426
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct: 456662 tcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgc 456721
Query: 427 acacgccaccggggaggta 445
||||||| || ||||||||
Sbjct: 456722 acacgccgcccgggaggta 456740
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 101 bits (51), Expect = 4e-019
Identities = 117/139 (84%)
Strand = Plus / Plus
Query: 307 ctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgc 366
|||||| ||| | ||||||| ||| ||||| || ||||| ||||| | | |||||||||
Sbjct: 10968677 ctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcgtcgc 10968736
Query: 367 ccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgc 426
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct: 10968737 tcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgc 10968796
Query: 427 acacgccaccggggaggta 445
||||||| || ||||||||
Sbjct: 10968797 acacgccgcccgggaggta 10968815
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 101 bits (51), Expect = 4e-019
Identities = 117/139 (84%)
Strand = Plus / Plus
Query: 307 ctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgc 366
|||||| ||| | ||||||| ||| ||||| || ||||| ||||| | | |||||||||
Sbjct: 25019384 ctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcgtcgc 25019443
Query: 367 ccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgc 426
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct: 25019444 tcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgc 25019503
Query: 427 acacgccaccggggaggta 445
||||||| || ||||||||
Sbjct: 25019504 acacgccgcccgggaggta 25019522
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 101 bits (51), Expect = 4e-019
Identities = 117/139 (84%)
Strand = Plus / Plus
Query: 307 ctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgc 366
|||||| ||| | ||||||| ||| ||||| || ||||| ||||| | | |||||||||
Sbjct: 24456922 ctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcgtcgc 24456981
Query: 367 ccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgc 426
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct: 24456982 tcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgc 24457041
Query: 427 acacgccaccggggaggta 445
||||||| || ||||||||
Sbjct: 24457042 acacgccgcccgggaggta 24457060
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 101 bits (51), Expect = 4e-019
Identities = 117/139 (84%)
Strand = Plus / Plus
Query: 307 ctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgc 366
|||||| ||| | ||||||| ||| ||||| || ||||| ||||| | | |||||||||
Sbjct: 24539453 ctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcgtcgc 24539512
Query: 367 ccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgc 426
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct: 24539513 tcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgc 24539572
Query: 427 acacgccaccggggaggta 445
||||||| || ||||||||
Sbjct: 24539573 acacgccgcccgggaggta 24539591
>dbj|AK058416.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-D03, full
insert sequence
Length = 375
Score = 73.8 bits (37), Expect = 1e-010
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 312 atgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccacc 371
||||||||||||||| ||||||||| || ||||| ||||| ||| ||||||||| |
Sbjct: 90 atgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgctaaga 31
Query: 372 accttccacgccactgcctgctcgtacga 400
|||||||||||||| |||||||| |||||
Sbjct: 30 accttccacgccaccgcctgctcatacga 2
>gb|AU173356.1|AU173356 AU173356 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2413, mRNA sequence
Length = 449
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 355 cgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcc 404
|||||||| || | ||||||||||||||||| |||| |||||||||||||
Sbjct: 206 cgccgtcgccgtcgaccaccttccacgccaccgccttctcgtacgacgcc 157
>dbj|AK112091.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-A01, full
insert sequence
Length = 1429
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 355 cgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcc 404
|||||||| || | ||||||||||||||||| |||| |||||||||||||
Sbjct: 1248 cgccgtcgccgtcgaccaccttccacgccaccgccttctcgtacgacgcc 1199
>gb|AACV01000373.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000373,
whole genome shotgun sequence
Length = 1487
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 355 cgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcc 404
|||||||| || | ||||||||||||||||| |||| |||||||||||||
Sbjct: 252 cgccgtcgccgtcgaccaccttccacgccaccgccttctcgtacgacgcc 203
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 355 cgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcc 404
|||||||| || | ||||||||||||||||| |||| |||||||||||||
Sbjct: 5423545 cgccgtcgccgtcgaccaccttccacgccaccgccttctcgtacgacgcc 5423594
>ref|NM_188279.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2697
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 355 cgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcc 404
|||||||| || | ||||||||||||||||| |||| |||||||||||||
Sbjct: 2647 cgccgtcgccgtcgaccaccttccacgccaccgccttctcgtacgacgcc 2598
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 355 cgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcc 404
|||||||| || | ||||||||||||||||| |||| |||||||||||||
Sbjct: 5423385 cgccgtcgccgtcgaccaccttccacgccaccgccttctcgtacgacgcc 5423434
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1015E06
Length = 164583
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 355 cgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcc 404
|||||||| || | ||||||||||||||||| |||| |||||||||||||
Sbjct: 22603 cgccgtcgccgtcgaccaccttccacgccaccgccttctcgtacgacgcc 22652
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 355 cgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcc 404
|||||||| || | ||||||||||||||||| |||| |||||||||||||
Sbjct: 5424465 cgccgtcgccgtcgaccaccttccacgccaccgccttctcgtacgacgcc 5424514
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 355 cgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcc 404
|||||||| || | ||||||||||||||||| |||| |||||||||||||
Sbjct: 5424465 cgccgtcgccgtcgaccaccttccacgccaccgccttctcgtacgacgcc 5424514
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 355 cgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcc 404
|||||||| || | ||||||||||||||||| |||| |||||||||||||
Sbjct: 5425763 cgccgtcgccgtcgaccaccttccacgccaccgccttctcgtacgacgcc 5425812
>gb|CB654750.1|CB654750 OSJNEc07I06.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07I06 3', mRNA sequence
Length = 766
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 355 cgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcc 404
|||||||| || | ||||||||||||||||| |||| |||| ||||||||
Sbjct: 113 cgccgtcgccgtcgaccaccttccacgccaccgccttctcggacgacgcc 162
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 891,385
Number of Sequences: 438736
Number of extensions: 891385
Number of successful extensions: 6362
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6177
Number of HSP's gapped (non-prelim): 183
length of query: 636
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 615
effective length of database: 2,791,206,460
effective search space: 1716591972900
effective search space used: 1716591972900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)