BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594433.2.1
(766 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB111916.1| Oryza sativa (japonica cultivar-group) OsRP... 365 2e-098
dbj|AK060582.1| Oryza sativa (japonica cultivar-group) cDNA... 357 6e-096
gb|AC135158.2| Oryza sativa (japonica cultivar-group) chrom... 153 2e-034
gb|AC134241.2| Oryza sativa (japonica cultivar-group) chrom... 153 2e-034
gb|AACV01006099.1| Oryza sativa (japonica cultivar-group) c... 153 2e-034
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 153 2e-034
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 153 2e-034
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 153 2e-034
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 153 2e-034
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 153 2e-034
gb|AQ396394.2|AQ396394 nbxb0067P07r CUGI Rice BAC Library O... 72 5e-010
>dbj|AB111916.1| Oryza sativa (japonica cultivar-group) OsRPA70b mRNA for replication
protein A 70b, complete cds
Length = 1928
Score = 365 bits (184), Expect = 2e-098
Identities = 376/440 (85%)
Strand = Plus / Minus
Query: 296 ctagcaagcagtaagcttcgctatctgttcaagcaggtacttggattcagctgcgtgctc 355
||||||| | || ||||| ||||||| || |||| |||||||| |||||||||||| ||
Sbjct: 1900 ctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggtc 1841
Query: 356 gaccggcgcttcactcctcacagtgattctctgccttttctcgttattgtattcatgctg 415
||||| |||||||||||||||||||| |||||||| ||||| || |||| |||| |||
Sbjct: 1840 taccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattctg 1781
Query: 416 tgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttcagagcata 475
|| ||||||||||||||||||||||||||||| || |||||||| ||||| ||| ||
Sbjct: 1780 agttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggta 1721
Query: 476 actgtcgtccccctcctctttcctgatccgatcaagctcgtcggcgctgcagccaatgat 535
|||||| || |||||||| ||||| ||||||||||||||||| || |||||||||| ||
Sbjct: 1720 actgtcatcaccctcctccttcctaatccgatcaagctcgtctgcactgcagccaacaat 1661
Query: 536 cttctctgcatgctcgttgaacacagagacccatgcctcgccagtaggatcggagacctt 595
| ||||||| || || ||||||| ||| | ||| ||||| |||||||| |||||||||||
Sbjct: 1660 cctctctgcctgatcattgaacagagaaagccaggcctcaccagtagggtcggagacctt 1601
Query: 596 gacgaccatgatgtatctcagtgagcattccgagtcattcttttggcatccctcgcacca 655
|| |||||||||||| ||||||||||| || | |||||||| ||||| || || |||||
Sbjct: 1600 gatgaccatgatgtacctcagtgagcactcagcatcattcttctggcacccttcacacca 1541
Query: 656 gtatccagatccaaaagtttcagtcaccttcttgttgcaggtcttgcaagcacggtacca 715
|||||| ||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1540 gtatcctgatccaattgcctcagtcaccttcttgttgcaggtcttgcaagctcggtacca 1481
Query: 716 catgttctggtcaggcttga 735
|||| | |||||||||||||
Sbjct: 1480 catggtttggtcaggcttga 1461
>dbj|AK060582.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H05, full
insert sequence
Length = 2221
Score = 357 bits (180), Expect = 6e-096
Identities = 375/440 (85%)
Strand = Plus / Minus
Query: 296 ctagcaagcagtaagcttcgctatctgttcaagcaggtacttggattcagctgcgtgctc 355
||||||| | || ||||| ||||||| || |||| |||||||| |||||||||||| ||
Sbjct: 1982 ctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggtc 1923
Query: 356 gaccggcgcttcactcctcacagtgattctctgccttttctcgttattgtattcatgctg 415
||||| |||||||||||||||||||| |||||||| ||||| || |||| |||| |||
Sbjct: 1922 taccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattctg 1863
Query: 416 tgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttcagagcata 475
|| ||||||||||||||||||||||||||||| || |||||||| ||||| ||| ||
Sbjct: 1862 agttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggta 1803
Query: 476 actgtcgtccccctcctctttcctgatccgatcaagctcgtcggcgctgcagccaatgat 535
|||||| || |||||||| ||||| |||||||||||||| || || |||||||||| ||
Sbjct: 1802 actgtcatcaccctcctccttcctaatccgatcaagctcatctgcactgcagccaacaat 1743
Query: 536 cttctctgcatgctcgttgaacacagagacccatgcctcgccagtaggatcggagacctt 595
| ||||||| || || ||||||| ||| | ||| ||||| |||||||| |||||||||||
Sbjct: 1742 cctctctgcctgatcattgaacagagaaagccaggcctcaccagtagggtcggagacctt 1683
Query: 596 gacgaccatgatgtatctcagtgagcattccgagtcattcttttggcatccctcgcacca 655
|| |||||||||||| ||||||||||| || | |||||||| ||||| || || |||||
Sbjct: 1682 gatgaccatgatgtacctcagtgagcactcagcatcattcttctggcacccttcacacca 1623
Query: 656 gtatccagatccaaaagtttcagtcaccttcttgttgcaggtcttgcaagcacggtacca 715
|||||| ||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1622 gtatcctgatccaattgcctcagtcaccttcttgttgcaggtcttgcaagctcggtacca 1563
Query: 716 catgttctggtcaggcttga 735
|||| | |||||||||||||
Sbjct: 1562 catggtttggtcaggcttga 1543
>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
complete sequence
Length = 111961
Score = 153 bits (77), Expect = 2e-034
Identities = 167/197 (84%)
Strand = Plus / Minus
Query: 296 ctagcaagcagtaagcttcgctatctgttcaagcaggtacttggattcagctgcgtgctc 355
||||||| | || ||||| ||||||| || |||| |||||||| |||||||||||| ||
Sbjct: 9597 ctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggtc 9538
Query: 356 gaccggcgcttcactcctcacagtgattctctgccttttctcgttattgtattcatgctg 415
||||| |||||||||||||||||||| |||||||| ||||| || |||| |||| |||
Sbjct: 9537 taccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattctg 9478
Query: 416 tgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttcagagcata 475
|| ||||||||||||||||||||||||||||| || |||||||| ||||| ||| ||
Sbjct: 9477 agttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggta 9418
Query: 476 actgtcgtccccctcct 492
|||||| || |||||||
Sbjct: 9417 actgtcatcaccctcct 9401
Score = 119 bits (60), Expect = 2e-024
Identities = 108/124 (87%)
Strand = Plus / Minus
Query: 612 ctcagtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaa 671
||||||||||| || | |||||||| ||||| || || ||||||||||| |||||||
Sbjct: 8982 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 8923
Query: 672 gtttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggc 731
| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct: 8922 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 8863
Query: 732 ttga 735
||||
Sbjct: 8862 ttga 8859
Score = 97.6 bits (49), Expect = 8e-018
Identities = 103/121 (85%)
Strand = Plus / Minus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||| ||||| |||||||||||||| || || |||||||||| ||| ||||||| || |
Sbjct: 9193 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 9134
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
| ||||||| ||| | ||| ||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 9133 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 9074
Query: 610 a 610
|
Sbjct: 9073 a 9073
>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0085F02,
complete sequence
Length = 128535
Score = 153 bits (77), Expect = 2e-034
Identities = 167/197 (84%)
Strand = Plus / Minus
Query: 296 ctagcaagcagtaagcttcgctatctgttcaagcaggtacttggattcagctgcgtgctc 355
||||||| | || ||||| ||||||| || |||| |||||||| |||||||||||| ||
Sbjct: 100684 ctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggtc 100625
Query: 356 gaccggcgcttcactcctcacagtgattctctgccttttctcgttattgtattcatgctg 415
||||| |||||||||||||||||||| |||||||| ||||| || |||| |||| |||
Sbjct: 100624 taccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattctg 100565
Query: 416 tgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttcagagcata 475
|| ||||||||||||||||||||||||||||| || |||||||| ||||| ||| ||
Sbjct: 100564 agttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggta 100505
Query: 476 actgtcgtccccctcct 492
|||||| || |||||||
Sbjct: 100504 actgtcatcaccctcct 100488
Score = 119 bits (60), Expect = 2e-024
Identities = 108/124 (87%)
Strand = Plus / Minus
Query: 612 ctcagtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaa 671
||||||||||| || | |||||||| ||||| || || ||||||||||| |||||||
Sbjct: 100069 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 100010
Query: 672 gtttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggc 731
| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct: 100009 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 99950
Query: 732 ttga 735
||||
Sbjct: 99949 ttga 99946
Score = 97.6 bits (49), Expect = 8e-018
Identities = 103/121 (85%)
Strand = Plus / Minus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||| ||||| |||||||||||||| || || |||||||||| ||| ||||||| || |
Sbjct: 100280 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 100221
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
| ||||||| ||| | ||| ||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 100220 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 100161
Query: 610 a 610
|
Sbjct: 100160 a 100160
>gb|AACV01006099.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006099, whole
genome shotgun sequence
Length = 43449
Score = 153 bits (77), Expect = 2e-034
Identities = 167/197 (84%)
Strand = Plus / Minus
Query: 296 ctagcaagcagtaagcttcgctatctgttcaagcaggtacttggattcagctgcgtgctc 355
||||||| | || ||||| ||||||| || |||| |||||||| |||||||||||| ||
Sbjct: 37623 ctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggtc 37564
Query: 356 gaccggcgcttcactcctcacagtgattctctgccttttctcgttattgtattcatgctg 415
||||| |||||||||||||||||||| |||||||| ||||| || |||| |||| |||
Sbjct: 37563 taccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattctg 37504
Query: 416 tgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttcagagcata 475
|| ||||||||||||||||||||||||||||| || |||||||| ||||| ||| ||
Sbjct: 37503 agttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggta 37444
Query: 476 actgtcgtccccctcct 492
|||||| || |||||||
Sbjct: 37443 actgtcatcaccctcct 37427
Score = 119 bits (60), Expect = 2e-024
Identities = 108/124 (87%)
Strand = Plus / Minus
Query: 612 ctcagtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaa 671
||||||||||| || | |||||||| ||||| || || ||||||||||| |||||||
Sbjct: 37008 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 36949
Query: 672 gtttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggc 731
| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct: 36948 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 36889
Query: 732 ttga 735
||||
Sbjct: 36888 ttga 36885
Score = 97.6 bits (49), Expect = 8e-018
Identities = 103/121 (85%)
Strand = Plus / Minus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||| ||||| |||||||||||||| || || |||||||||| ||| ||||||| || |
Sbjct: 37219 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 37160
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
| ||||||| ||| | ||| ||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 37159 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 37100
Query: 610 a 610
|
Sbjct: 37099 a 37099
>ref|NT_107189.1| Oryza sativa (japonica cultivar-group)
Length = 1905944
Score = 153 bits (77), Expect = 2e-034
Identities = 167/197 (84%)
Strand = Plus / Minus
Query: 296 ctagcaagcagtaagcttcgctatctgttcaagcaggtacttggattcagctgcgtgctc 355
||||||| | || ||||| ||||||| || |||| |||||||| |||||||||||| ||
Sbjct: 1114608 ctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggtc 1114549
Query: 356 gaccggcgcttcactcctcacagtgattctctgccttttctcgttattgtattcatgctg 415
||||| |||||||||||||||||||| |||||||| ||||| || |||| |||| |||
Sbjct: 1114548 taccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattctg 1114489
Query: 416 tgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttcagagcata 475
|| ||||||||||||||||||||||||||||| || |||||||| ||||| ||| ||
Sbjct: 1114488 agttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggta 1114429
Query: 476 actgtcgtccccctcct 492
|||||| || |||||||
Sbjct: 1114428 actgtcatcaccctcct 1114412
Score = 119 bits (60), Expect = 2e-024
Identities = 108/124 (87%)
Strand = Plus / Minus
Query: 612 ctcagtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaa 671
||||||||||| || | |||||||| ||||| || || ||||||||||| |||||||
Sbjct: 1113993 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 1113934
Query: 672 gtttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggc 731
| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct: 1113933 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 1113874
Query: 732 ttga 735
||||
Sbjct: 1113873 ttga 1113870
Score = 97.6 bits (49), Expect = 8e-018
Identities = 103/121 (85%)
Strand = Plus / Minus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||| ||||| |||||||||||||| || || |||||||||| ||| ||||||| || |
Sbjct: 1114204 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 1114145
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
| ||||||| ||| | ||| ||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 1114144 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 1114085
Query: 610 a 610
|
Sbjct: 1114084 a 1114084
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 153 bits (77), Expect = 2e-034
Identities = 167/197 (84%)
Strand = Plus / Minus
Query: 296 ctagcaagcagtaagcttcgctatctgttcaagcaggtacttggattcagctgcgtgctc 355
||||||| | || ||||| ||||||| || |||| |||||||| |||||||||||| ||
Sbjct: 5984678 ctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggtc 5984619
Query: 356 gaccggcgcttcactcctcacagtgattctctgccttttctcgttattgtattcatgctg 415
||||| |||||||||||||||||||| |||||||| ||||| || |||| |||| |||
Sbjct: 5984618 taccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattctg 5984559
Query: 416 tgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttcagagcata 475
|| ||||||||||||||||||||||||||||| || |||||||| ||||| ||| ||
Sbjct: 5984558 agttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggta 5984499
Query: 476 actgtcgtccccctcct 492
|||||| || |||||||
Sbjct: 5984498 actgtcatcaccctcct 5984482
Score = 119 bits (60), Expect = 2e-024
Identities = 108/124 (87%)
Strand = Plus / Minus
Query: 612 ctcagtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaa 671
||||||||||| || | |||||||| ||||| || || ||||||||||| |||||||
Sbjct: 5984063 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 5984004
Query: 672 gtttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggc 731
| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct: 5984003 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 5983944
Query: 732 ttga 735
||||
Sbjct: 5983943 ttga 5983940
Score = 97.6 bits (49), Expect = 8e-018
Identities = 103/121 (85%)
Strand = Plus / Minus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||| ||||| |||||||||||||| || || |||||||||| ||| ||||||| || |
Sbjct: 5984274 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 5984215
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
| ||||||| ||| | ||| ||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 5984214 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 5984155
Query: 610 a 610
|
Sbjct: 5984154 a 5984154
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 153 bits (77), Expect = 2e-034
Identities = 167/197 (84%)
Strand = Plus / Minus
Query: 296 ctagcaagcagtaagcttcgctatctgttcaagcaggtacttggattcagctgcgtgctc 355
||||||| | || ||||| ||||||| || |||| |||||||| |||||||||||| ||
Sbjct: 6177040 ctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggtc 6176981
Query: 356 gaccggcgcttcactcctcacagtgattctctgccttttctcgttattgtattcatgctg 415
||||| |||||||||||||||||||| |||||||| ||||| || |||| |||| |||
Sbjct: 6176980 taccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattctg 6176921
Query: 416 tgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttcagagcata 475
|| ||||||||||||||||||||||||||||| || |||||||| ||||| ||| ||
Sbjct: 6176920 agttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggta 6176861
Query: 476 actgtcgtccccctcct 492
|||||| || |||||||
Sbjct: 6176860 actgtcatcaccctcct 6176844
Score = 119 bits (60), Expect = 2e-024
Identities = 108/124 (87%)
Strand = Plus / Minus
Query: 612 ctcagtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaa 671
||||||||||| || | |||||||| ||||| || || ||||||||||| |||||||
Sbjct: 6176425 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 6176366
Query: 672 gtttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggc 731
| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct: 6176365 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 6176306
Query: 732 ttga 735
||||
Sbjct: 6176305 ttga 6176302
Score = 97.6 bits (49), Expect = 8e-018
Identities = 103/121 (85%)
Strand = Plus / Minus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||| ||||| |||||||||||||| || || |||||||||| ||| ||||||| || |
Sbjct: 6176636 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 6176577
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
| ||||||| ||| | ||| ||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 6176576 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 6176517
Query: 610 a 610
|
Sbjct: 6176516 a 6176516
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 153 bits (77), Expect = 2e-034
Identities = 167/197 (84%)
Strand = Plus / Minus
Query: 296 ctagcaagcagtaagcttcgctatctgttcaagcaggtacttggattcagctgcgtgctc 355
||||||| | || ||||| ||||||| || |||| |||||||| |||||||||||| ||
Sbjct: 5950275 ctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggtc 5950216
Query: 356 gaccggcgcttcactcctcacagtgattctctgccttttctcgttattgtattcatgctg 415
||||| |||||||||||||||||||| |||||||| ||||| || |||| |||| |||
Sbjct: 5950215 taccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattctg 5950156
Query: 416 tgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttcagagcata 475
|| ||||||||||||||||||||||||||||| || |||||||| ||||| ||| ||
Sbjct: 5950155 agttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggta 5950096
Query: 476 actgtcgtccccctcct 492
|||||| || |||||||
Sbjct: 5950095 actgtcatcaccctcct 5950079
Score = 119 bits (60), Expect = 2e-024
Identities = 108/124 (87%)
Strand = Plus / Minus
Query: 612 ctcagtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaa 671
||||||||||| || | |||||||| ||||| || || ||||||||||| |||||||
Sbjct: 5949660 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 5949601
Query: 672 gtttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggc 731
| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct: 5949600 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 5949541
Query: 732 ttga 735
||||
Sbjct: 5949540 ttga 5949537
Score = 97.6 bits (49), Expect = 8e-018
Identities = 103/121 (85%)
Strand = Plus / Minus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||| ||||| |||||||||||||| || || |||||||||| ||| ||||||| || |
Sbjct: 5949871 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 5949812
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
| ||||||| ||| | ||| ||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 5949811 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 5949752
Query: 610 a 610
|
Sbjct: 5949751 a 5949751
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 153 bits (77), Expect = 2e-034
Identities = 167/197 (84%)
Strand = Plus / Minus
Query: 296 ctagcaagcagtaagcttcgctatctgttcaagcaggtacttggattcagctgcgtgctc 355
||||||| | || ||||| ||||||| || |||| |||||||| |||||||||||| ||
Sbjct: 5951062 ctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggtc 5951003
Query: 356 gaccggcgcttcactcctcacagtgattctctgccttttctcgttattgtattcatgctg 415
||||| |||||||||||||||||||| |||||||| ||||| || |||| |||| |||
Sbjct: 5951002 taccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattctg 5950943
Query: 416 tgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttcagagcata 475
|| ||||||||||||||||||||||||||||| || |||||||| ||||| ||| ||
Sbjct: 5950942 agttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggta 5950883
Query: 476 actgtcgtccccctcct 492
|||||| || |||||||
Sbjct: 5950882 actgtcatcaccctcct 5950866
Score = 119 bits (60), Expect = 2e-024
Identities = 108/124 (87%)
Strand = Plus / Minus
Query: 612 ctcagtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaa 671
||||||||||| || | |||||||| ||||| || || ||||||||||| |||||||
Sbjct: 5950447 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 5950388
Query: 672 gtttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggc 731
| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct: 5950387 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 5950328
Query: 732 ttga 735
||||
Sbjct: 5950327 ttga 5950324
Score = 97.6 bits (49), Expect = 8e-018
Identities = 103/121 (85%)
Strand = Plus / Minus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||| ||||| |||||||||||||| || || |||||||||| ||| ||||||| || |
Sbjct: 5950658 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 5950599
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
| ||||||| ||| | ||| ||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 5950598 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 5950539
Query: 610 a 610
|
Sbjct: 5950538 a 5950538
>gb|AQ396394.2|AQ396394 nbxb0067P07r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0067P07r, DNA sequence
Length = 987
Score = 71.9 bits (36), Expect = 5e-010
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 684 ttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggcttga 735
||||||||| ||||||||||||| |||||||||||| | |||||||||||||
Sbjct: 540 ttcttgttgtaggtcttgcaagctcggtaccacatggtttggtcaggcttga 591
Score = 58.0 bits (29), Expect = 7e-006
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 504 cgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgctcgttgaacacagag 563
||||||||||| | || |||||||||| ||| |||||| || || ||||||| |||
Sbjct: 270 cgatcaagctcatttgcactgcagccaacaatcctctctgtctgatcattgaacagagaa 329
Query: 564 acccatgcctcgccagtaggatcggagaccttgacgaccatgatg 608
| ||| ||||| |||||||| || |||||||||| ||||||||||
Sbjct: 330 agccaggcctcaccagtagggtctgagaccttgatgaccatgatg 374
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 917,654
Number of Sequences: 438736
Number of extensions: 917654
Number of successful extensions: 5402
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5360
Number of HSP's gapped (non-prelim): 42
length of query: 766
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 745
effective length of database: 2,791,206,460
effective search space: 2079448812700
effective search space used: 2079448812700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)