BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594405.2.1
(637 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100891.1| Oryza sativa (japonica cultivar-group) cDNA... 315 2e-083
dbj|AP005641.4| Oryza sativa (japonica cultivar-group) geno... 315 2e-083
gb|AACV01016065.1| Oryza sativa (japonica cultivar-group) c... 315 2e-083
ref|XM_477949.1| Oryza sativa (japonica cultivar-group), mRNA 315 2e-083
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 315 2e-083
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 315 2e-083
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 315 2e-083
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 315 2e-083
gb|AU101994.1|AU101994 AU101994 Rice shoot Oryza sativa (ja... 90 2e-015
>dbj|AK100891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130H08, full
insert sequence
Length = 3792
Score = 315 bits (159), Expect = 2e-083
Identities = 393/471 (83%)
Strand = Plus / Minus
Query: 163 cacctgaaccgggctatccttgtcaacaacaaacgatctagctaccttgcctgaaggcgt 222
||||||||| | | ||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 3613 cacctgaacagcgttatccttgtcaacaacaaacgatctggttacctttcctgaaggcgt 3554
Query: 223 gttcacttccactgtgtacgaaccatggtatcctctgaacttaaactctccttggtgatc 282
||||| || ||||| || |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 3553 tgctacttctaccgtgtatgacccatggtagcctctgaacttcaactctccatggtgatc 3494
Query: 283 gacactgccgttcatacgggtcagccactcttgtttgagagcaaggtacctcctgccagc 342
|| |||| | || | ||| ||||||||||| || || |||| |||||| |||||||
Sbjct: 3493 cacgttgccagtaatgctggttagccactcttgcttcagtgcaatgtaccttttgccagc 3434
Query: 343 ctcgttgattgtcccatcagcatcgaccagatgggcgtgctctcgaaacataaacatctc 402
||| ||||| || |||||| |||| ||||| || ||||| ||||| ||||| |||| |||
Sbjct: 3433 ctcattgatcgttccatcaacatcaaccaggtgagcgtgttctcggaacatgaacagctc 3374
Query: 403 ccagaatccccagaggatgattccccccacagcaggatgtgcaaatgcttcccggaggaa 462
|||||||||||| ||||| || ||| |||| | |||||| ||||| ||||| || ||| |
Sbjct: 3373 ccagaatccccaaaggataatcccctccacggaaggatgcgcaaaggcttcgcgaaggta 3314
Query: 463 cacctctagatcatcagctcgtatgtgctcgttctctgctgtgacatccaactcagtaat 522
|||||| |||||||| ||||| ||||| || ||||| || ||||||||||| || || ||
Sbjct: 3313 cacctccagatcatcggctcggatgtgttcattctcagccgtgacatccaattcggtgat 3254
Query: 523 ccagatcgggagacccagtatggcgagcttgtccagggaatcacatatgatttctcctac 582
|||||| |||||||||||||||| |||||||||||||||||| || ||||| || || ||
Sbjct: 3253 ccagatagggagacccagtatggagagcttgtccagggaatcgcagatgatgtcacccac 3194
Query: 583 cggatggctgatatgaccttgcacaccgatcccaccaactggagcgcccct 633
||||| ||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 3193 tggatgcgtgatatgaccttgcaagccaatcccaccaactggagcacccct 3143
>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0027N13
Length = 179669
Score = 315 bits (159), Expect = 2e-083
Identities = 393/471 (83%)
Strand = Plus / Minus
Query: 163 cacctgaaccgggctatccttgtcaacaacaaacgatctagctaccttgcctgaaggcgt 222
||||||||| | | ||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 75787 cacctgaacagcgttatccttgtcaacaacaaacgatctggttacctttcctgaaggcgt 75728
Query: 223 gttcacttccactgtgtacgaaccatggtatcctctgaacttaaactctccttggtgatc 282
||||| || ||||| || |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 75727 tgctacttctaccgtgtatgacccatggtagcctctgaacttcaactctccatggtgatc 75668
Query: 283 gacactgccgttcatacgggtcagccactcttgtttgagagcaaggtacctcctgccagc 342
|| |||| | || | ||| ||||||||||| || || |||| |||||| |||||||
Sbjct: 75667 cacgttgccagtaatgctggttagccactcttgcttcagtgcaatgtaccttttgccagc 75608
Query: 343 ctcgttgattgtcccatcagcatcgaccagatgggcgtgctctcgaaacataaacatctc 402
||| ||||| || |||||| |||| ||||| || ||||| ||||| ||||| |||| |||
Sbjct: 75607 ctcattgatcgttccatcaacatcaaccaggtgagcgtgttctcggaacatgaacagctc 75548
Query: 403 ccagaatccccagaggatgattccccccacagcaggatgtgcaaatgcttcccggaggaa 462
|||||||||||| ||||| || ||| |||| | |||||| ||||| ||||| || ||| |
Sbjct: 75547 ccagaatccccaaaggataatcccctccacggaaggatgcgcaaaggcttcgcgaaggta 75488
Query: 463 cacctctagatcatcagctcgtatgtgctcgttctctgctgtgacatccaactcagtaat 522
|||||| |||||||| ||||| ||||| || ||||| || ||||||||||| || || ||
Sbjct: 75487 cacctccagatcatcggctcggatgtgttcattctcagccgtgacatccaattcggtgat 75428
Query: 523 ccagatcgggagacccagtatggcgagcttgtccagggaatcacatatgatttctcctac 582
|||||| |||||||||||||||| |||||||||||||||||| || ||||| || || ||
Sbjct: 75427 ccagatagggagacccagtatggagagcttgtccagggaatcgcagatgatgtcacccac 75368
Query: 583 cggatggctgatatgaccttgcacaccgatcccaccaactggagcgcccct 633
||||| ||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 75367 tggatgcgtgatatgaccttgcaagccaatcccaccaactggagcacccct 75317
>gb|AACV01016065.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016065, whole
genome shotgun sequence
Length = 38425
Score = 315 bits (159), Expect = 2e-083
Identities = 393/471 (83%)
Strand = Plus / Plus
Query: 163 cacctgaaccgggctatccttgtcaacaacaaacgatctagctaccttgcctgaaggcgt 222
||||||||| | | ||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 15054 cacctgaacagcgttatccttgtcaacaacaaacgatctggttacctttcctgaaggcgt 15113
Query: 223 gttcacttccactgtgtacgaaccatggtatcctctgaacttaaactctccttggtgatc 282
||||| || ||||| || |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 15114 tgctacttctaccgtgtatgacccatggtagcctctgaacttcaactctccatggtgatc 15173
Query: 283 gacactgccgttcatacgggtcagccactcttgtttgagagcaaggtacctcctgccagc 342
|| |||| | || | ||| ||||||||||| || || |||| |||||| |||||||
Sbjct: 15174 cacgttgccagtaatgctggttagccactcttgcttcagtgcaatgtaccttttgccagc 15233
Query: 343 ctcgttgattgtcccatcagcatcgaccagatgggcgtgctctcgaaacataaacatctc 402
||| ||||| || |||||| |||| ||||| || ||||| ||||| ||||| |||| |||
Sbjct: 15234 ctcattgatcgttccatcaacatcaaccaggtgagcgtgttctcggaacatgaacagctc 15293
Query: 403 ccagaatccccagaggatgattccccccacagcaggatgtgcaaatgcttcccggaggaa 462
|||||||||||| ||||| || ||| |||| | |||||| ||||| ||||| || ||| |
Sbjct: 15294 ccagaatccccaaaggataatcccctccacggaaggatgcgcaaaggcttcgcgaaggta 15353
Query: 463 cacctctagatcatcagctcgtatgtgctcgttctctgctgtgacatccaactcagtaat 522
|||||| |||||||| ||||| ||||| || ||||| || ||||||||||| || || ||
Sbjct: 15354 cacctccagatcatcggctcggatgtgttcattctcagccgtgacatccaattcggtgat 15413
Query: 523 ccagatcgggagacccagtatggcgagcttgtccagggaatcacatatgatttctcctac 582
|||||| |||||||||||||||| |||||||||||||||||| || ||||| || || ||
Sbjct: 15414 ccagatagggagacccagtatggagagcttgtccagggaatcgcagatgatgtcacccac 15473
Query: 583 cggatggctgatatgaccttgcacaccgatcccaccaactggagcgcccct 633
||||| ||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 15474 tggatgcgtgatatgaccttgcaagccaatcccaccaactggagcacccct 15524
>ref|XM_477949.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3793
Score = 315 bits (159), Expect = 2e-083
Identities = 393/471 (83%)
Strand = Plus / Minus
Query: 163 cacctgaaccgggctatccttgtcaacaacaaacgatctagctaccttgcctgaaggcgt 222
||||||||| | | ||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 3614 cacctgaacagcgttatccttgtcaacaacaaacgatctggttacctttcctgaaggcgt 3555
Query: 223 gttcacttccactgtgtacgaaccatggtatcctctgaacttaaactctccttggtgatc 282
||||| || ||||| || |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 3554 tgctacttctaccgtgtatgacccatggtagcctctgaacttcaactctccatggtgatc 3495
Query: 283 gacactgccgttcatacgggtcagccactcttgtttgagagcaaggtacctcctgccagc 342
|| |||| | || | ||| ||||||||||| || || |||| |||||| |||||||
Sbjct: 3494 cacgttgccagtaatgctggttagccactcttgcttcagtgcaatgtaccttttgccagc 3435
Query: 343 ctcgttgattgtcccatcagcatcgaccagatgggcgtgctctcgaaacataaacatctc 402
||| ||||| || |||||| |||| ||||| || ||||| ||||| ||||| |||| |||
Sbjct: 3434 ctcattgatcgttccatcaacatcaaccaggtgagcgtgttctcggaacatgaacagctc 3375
Query: 403 ccagaatccccagaggatgattccccccacagcaggatgtgcaaatgcttcccggaggaa 462
|||||||||||| ||||| || ||| |||| | |||||| ||||| ||||| || ||| |
Sbjct: 3374 ccagaatccccaaaggataatcccctccacggaaggatgcgcaaaggcttcgcgaaggta 3315
Query: 463 cacctctagatcatcagctcgtatgtgctcgttctctgctgtgacatccaactcagtaat 522
|||||| |||||||| ||||| ||||| || ||||| || ||||||||||| || || ||
Sbjct: 3314 cacctccagatcatcggctcggatgtgttcattctcagccgtgacatccaattcggtgat 3255
Query: 523 ccagatcgggagacccagtatggcgagcttgtccagggaatcacatatgatttctcctac 582
|||||| |||||||||||||||| |||||||||||||||||| || ||||| || || ||
Sbjct: 3254 ccagatagggagacccagtatggagagcttgtccagggaatcgcagatgatgtcacccac 3195
Query: 583 cggatggctgatatgaccttgcacaccgatcccaccaactggagcgcccct 633
||||| ||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 3194 tggatgcgtgatatgaccttgcaagccaatcccaccaactggagcacccct 3144
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 315 bits (159), Expect = 2e-083
Identities = 393/471 (83%)
Strand = Plus / Minus
Query: 163 cacctgaaccgggctatccttgtcaacaacaaacgatctagctaccttgcctgaaggcgt 222
||||||||| | | ||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 3459348 cacctgaacagcgttatccttgtcaacaacaaacgatctggttacctttcctgaaggcgt 3459289
Query: 223 gttcacttccactgtgtacgaaccatggtatcctctgaacttaaactctccttggtgatc 282
||||| || ||||| || |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 3459288 tgctacttctaccgtgtatgacccatggtagcctctgaacttcaactctccatggtgatc 3459229
Query: 283 gacactgccgttcatacgggtcagccactcttgtttgagagcaaggtacctcctgccagc 342
|| |||| | || | ||| ||||||||||| || || |||| |||||| |||||||
Sbjct: 3459228 cacgttgccagtaatgctggttagccactcttgcttcagtgcaatgtaccttttgccagc 3459169
Query: 343 ctcgttgattgtcccatcagcatcgaccagatgggcgtgctctcgaaacataaacatctc 402
||| ||||| || |||||| |||| ||||| || ||||| ||||| ||||| |||| |||
Sbjct: 3459168 ctcattgatcgttccatcaacatcaaccaggtgagcgtgttctcggaacatgaacagctc 3459109
Query: 403 ccagaatccccagaggatgattccccccacagcaggatgtgcaaatgcttcccggaggaa 462
|||||||||||| ||||| || ||| |||| | |||||| ||||| ||||| || ||| |
Sbjct: 3459108 ccagaatccccaaaggataatcccctccacggaaggatgcgcaaaggcttcgcgaaggta 3459049
Query: 463 cacctctagatcatcagctcgtatgtgctcgttctctgctgtgacatccaactcagtaat 522
|||||| |||||||| ||||| ||||| || ||||| || ||||||||||| || || ||
Sbjct: 3459048 cacctccagatcatcggctcggatgtgttcattctcagccgtgacatccaattcggtgat 3458989
Query: 523 ccagatcgggagacccagtatggcgagcttgtccagggaatcacatatgatttctcctac 582
|||||| |||||||||||||||| |||||||||||||||||| || ||||| || || ||
Sbjct: 3458988 ccagatagggagacccagtatggagagcttgtccagggaatcgcagatgatgtcacccac 3458929
Query: 583 cggatggctgatatgaccttgcacaccgatcccaccaactggagcgcccct 633
||||| ||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 3458928 tggatgcgtgatatgaccttgcaagccaatcccaccaactggagcacccct 3458878
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 315 bits (159), Expect = 2e-083
Identities = 393/471 (83%)
Strand = Plus / Minus
Query: 163 cacctgaaccgggctatccttgtcaacaacaaacgatctagctaccttgcctgaaggcgt 222
||||||||| | | ||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 1511662 cacctgaacagcgttatccttgtcaacaacaaacgatctggttacctttcctgaaggcgt 1511603
Query: 223 gttcacttccactgtgtacgaaccatggtatcctctgaacttaaactctccttggtgatc 282
||||| || ||||| || |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 1511602 tgctacttctaccgtgtatgacccatggtagcctctgaacttcaactctccatggtgatc 1511543
Query: 283 gacactgccgttcatacgggtcagccactcttgtttgagagcaaggtacctcctgccagc 342
|| |||| | || | ||| ||||||||||| || || |||| |||||| |||||||
Sbjct: 1511542 cacgttgccagtaatgctggttagccactcttgcttcagtgcaatgtaccttttgccagc 1511483
Query: 343 ctcgttgattgtcccatcagcatcgaccagatgggcgtgctctcgaaacataaacatctc 402
||| ||||| || |||||| |||| ||||| || ||||| ||||| ||||| |||| |||
Sbjct: 1511482 ctcattgatcgttccatcaacatcaaccaggtgagcgtgttctcggaacatgaacagctc 1511423
Query: 403 ccagaatccccagaggatgattccccccacagcaggatgtgcaaatgcttcccggaggaa 462
|||||||||||| ||||| || ||| |||| | |||||| ||||| ||||| || ||| |
Sbjct: 1511422 ccagaatccccaaaggataatcccctccacggaaggatgcgcaaaggcttcgcgaaggta 1511363
Query: 463 cacctctagatcatcagctcgtatgtgctcgttctctgctgtgacatccaactcagtaat 522
|||||| |||||||| ||||| ||||| || ||||| || ||||||||||| || || ||
Sbjct: 1511362 cacctccagatcatcggctcggatgtgttcattctcagccgtgacatccaattcggtgat 1511303
Query: 523 ccagatcgggagacccagtatggcgagcttgtccagggaatcacatatgatttctcctac 582
|||||| |||||||||||||||| |||||||||||||||||| || ||||| || || ||
Sbjct: 1511302 ccagatagggagacccagtatggagagcttgtccagggaatcgcagatgatgtcacccac 1511243
Query: 583 cggatggctgatatgaccttgcacaccgatcccaccaactggagcgcccct 633
||||| ||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 1511242 tggatgcgtgatatgaccttgcaagccaatcccaccaactggagcacccct 1511192
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 315 bits (159), Expect = 2e-083
Identities = 393/471 (83%)
Strand = Plus / Minus
Query: 163 cacctgaaccgggctatccttgtcaacaacaaacgatctagctaccttgcctgaaggcgt 222
||||||||| | | ||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 14911101 cacctgaacagcgttatccttgtcaacaacaaacgatctggttacctttcctgaaggcgt 14911042
Query: 223 gttcacttccactgtgtacgaaccatggtatcctctgaacttaaactctccttggtgatc 282
||||| || ||||| || |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 14911041 tgctacttctaccgtgtatgacccatggtagcctctgaacttcaactctccatggtgatc 14910982
Query: 283 gacactgccgttcatacgggtcagccactcttgtttgagagcaaggtacctcctgccagc 342
|| |||| | || | ||| ||||||||||| || || |||| |||||| |||||||
Sbjct: 14910981 cacgttgccagtaatgctggttagccactcttgcttcagtgcaatgtaccttttgccagc 14910922
Query: 343 ctcgttgattgtcccatcagcatcgaccagatgggcgtgctctcgaaacataaacatctc 402
||| ||||| || |||||| |||| ||||| || ||||| ||||| ||||| |||| |||
Sbjct: 14910921 ctcattgatcgttccatcaacatcaaccaggtgagcgtgttctcggaacatgaacagctc 14910862
Query: 403 ccagaatccccagaggatgattccccccacagcaggatgtgcaaatgcttcccggaggaa 462
|||||||||||| ||||| || ||| |||| | |||||| ||||| ||||| || ||| |
Sbjct: 14910861 ccagaatccccaaaggataatcccctccacggaaggatgcgcaaaggcttcgcgaaggta 14910802
Query: 463 cacctctagatcatcagctcgtatgtgctcgttctctgctgtgacatccaactcagtaat 522
|||||| |||||||| ||||| ||||| || ||||| || ||||||||||| || || ||
Sbjct: 14910801 cacctccagatcatcggctcggatgtgttcattctcagccgtgacatccaattcggtgat 14910742
Query: 523 ccagatcgggagacccagtatggcgagcttgtccagggaatcacatatgatttctcctac 582
|||||| |||||||||||||||| |||||||||||||||||| || ||||| || || ||
Sbjct: 14910741 ccagatagggagacccagtatggagagcttgtccagggaatcgcagatgatgtcacccac 14910682
Query: 583 cggatggctgatatgaccttgcacaccgatcccaccaactggagcgcccct 633
||||| ||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 14910681 tggatgcgtgatatgaccttgcaagccaatcccaccaactggagcacccct 14910631
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 315 bits (159), Expect = 2e-083
Identities = 393/471 (83%)
Strand = Plus / Minus
Query: 163 cacctgaaccgggctatccttgtcaacaacaaacgatctagctaccttgcctgaaggcgt 222
||||||||| | | ||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 15836273 cacctgaacagcgttatccttgtcaacaacaaacgatctggttacctttcctgaaggcgt 15836214
Query: 223 gttcacttccactgtgtacgaaccatggtatcctctgaacttaaactctccttggtgatc 282
||||| || ||||| || |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 15836213 tgctacttctaccgtgtatgacccatggtagcctctgaacttcaactctccatggtgatc 15836154
Query: 283 gacactgccgttcatacgggtcagccactcttgtttgagagcaaggtacctcctgccagc 342
|| |||| | || | ||| ||||||||||| || || |||| |||||| |||||||
Sbjct: 15836153 cacgttgccagtaatgctggttagccactcttgcttcagtgcaatgtaccttttgccagc 15836094
Query: 343 ctcgttgattgtcccatcagcatcgaccagatgggcgtgctctcgaaacataaacatctc 402
||| ||||| || |||||| |||| ||||| || ||||| ||||| ||||| |||| |||
Sbjct: 15836093 ctcattgatcgttccatcaacatcaaccaggtgagcgtgttctcggaacatgaacagctc 15836034
Query: 403 ccagaatccccagaggatgattccccccacagcaggatgtgcaaatgcttcccggaggaa 462
|||||||||||| ||||| || ||| |||| | |||||| ||||| ||||| || ||| |
Sbjct: 15836033 ccagaatccccaaaggataatcccctccacggaaggatgcgcaaaggcttcgcgaaggta 15835974
Query: 463 cacctctagatcatcagctcgtatgtgctcgttctctgctgtgacatccaactcagtaat 522
|||||| |||||||| ||||| ||||| || ||||| || ||||||||||| || || ||
Sbjct: 15835973 cacctccagatcatcggctcggatgtgttcattctcagccgtgacatccaattcggtgat 15835914
Query: 523 ccagatcgggagacccagtatggcgagcttgtccagggaatcacatatgatttctcctac 582
|||||| |||||||||||||||| |||||||||||||||||| || ||||| || || ||
Sbjct: 15835913 ccagatagggagacccagtatggagagcttgtccagggaatcgcagatgatgtcacccac 15835854
Query: 583 cggatggctgatatgaccttgcacaccgatcccaccaactggagcgcccct 633
||||| ||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 15835853 tggatgcgtgatatgaccttgcaagccaatcccaccaactggagcacccct 15835803
>gb|AU101994.1|AU101994 AU101994 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4091, mRNA sequence
Length = 415
Score = 89.7 bits (45), Expect = 2e-015
Identities = 103/121 (85%), Gaps = 1/121 (0%)
Strand = Plus / Minus
Query: 163 cacctgaaccgggctatccttgtcaacaacaaacgatctagctaccttgcctgaaggcgt 222
||||||||| | | ||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 221 cacctgaacagcgttatccttgtcaacaacaaacgatctggttacctttcctgaaggcgt 162
Query: 223 gttcacttccactgtgtacgaaccatggtatcctctg-aacttaaactctccttggtgat 281
||||| || ||||| || |||||||| |||||| ||||| |||||||| |||||||
Sbjct: 161 tgctacttctaccgtgtatgacccatggtagcctctgaaacttcaactctccatggtgat 102
Query: 282 c 282
|
Sbjct: 101 c 101
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 671,016
Number of Sequences: 438736
Number of extensions: 671016
Number of successful extensions: 2361
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2315
Number of HSP's gapped (non-prelim): 30
length of query: 637
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 616
effective length of database: 2,791,206,460
effective search space: 1719383179360
effective search space used: 1719383179360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)