BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594211.2.1
(668 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA... 212 2e-052
dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA... 212 2e-052
gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) c... 212 2e-052
ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA 212 2e-052
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 212 2e-052
ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-... 212 2e-052
dbj|AP004114.3| Oryza sativa (japonica cultivar-group) geno... 212 2e-052
dbj|AP005297.3| Oryza sativa (japonica cultivar-group) geno... 212 2e-052
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 212 2e-052
gb|CB645780.1|CB645780 OSJNEb07L24.r OSJNEb Oryza sativa (j... 204 4e-050
gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (j... 96 3e-017
gb|CV730571.1|CV730571 FLO--04-C21.b1 Rice flower lambda ph... 94 1e-016
dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA... 94 1e-016
dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA... 94 1e-016
gb|AC144737.2| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
gb|AACV01012416.1| Oryza sativa (japonica cultivar-group) c... 94 1e-016
ref|XM_475418.1| Oryza sativa (japonica cultivar-group), p... 94 1e-016
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 94 1e-016
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
dbj|AK107698.1| Oryza sativa (japonica cultivar-group) cDNA... 88 7e-015
gb|AACV01006557.1| Oryza sativa (japonica cultivar-group) c... 88 7e-015
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 88 7e-015
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 88 7e-015
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 88 7e-015
gb|AC125496.3| Oryza sativa (japonica cultivar-group) chrom... 88 7e-015
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 88 7e-015
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 88 7e-015
gb|AU031005.1|AU031005 AU031005 Rice cDNA from immature lea... 76 3e-011
gb|AU078691.1|AU078691 AU078691 Rice panicle shorter than 3... 62 4e-007
dbj|AK070463.1| Oryza sativa (japonica cultivar-group) cDNA... 62 4e-007
gb|U30477.1|OSU30477 Oryza sativa (japonica cultivar-group)... 62 4e-007
gb|AACV01002595.1| Oryza sativa (japonica cultivar-group) c... 62 4e-007
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
ref|NM_190380.1| Oryza sativa (japonica cultivar-group), p... 62 4e-007
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 62 4e-007
dbj|AP003348.3| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
dbj|AP003230.4| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|AU078738.1|AU078738 AU078738 Rice shoot Oryza sativa (ja... 58 6e-006
gb|AU081601.1|AU081601 AU081601 Rice shoot Oryza sativa (ja... 58 6e-006
gb|C25149.1|C25149 C25149 Rice shoot Oryza sativa (japonica... 56 3e-005
dbj|AK063455.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
dbj|AK101784.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
dbj|AK119215.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 ... 56 3e-005
gb|AACV01008182.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
ref|NM_185168.1| Oryza sativa (japonica cultivar-group), mRNA 56 3e-005
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|AC133338.2| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AK111100.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic seque... 52 4e-004
gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 ... 52 4e-004
gb|AACV01000580.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
gb|AACV01006741.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|XM_470717.1| Oryza sativa (japonica cultivar-group), mRNA 52 4e-004
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 52 4e-004
ref|NM_188790.1| Oryza sativa (japonica cultivar-group), p... 52 4e-004
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 52 4e-004
dbj|AP002865.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|DQ061062.1| Oryza sativa (japonica cultivar-group) alpha... 52 4e-004
gb|AACV01000668.1| Oryza sativa (japonica cultivar-group) c... 46 0.024
ref|XM_493787.1| Oryza sativa (japonica cultivar-group), Oz... 46 0.024
dbj|AP000837.1| Oryza sativa (japonica cultivar-group) geno... 46 0.024
gb|DQ062981.1| Oryza sativa (japonica cultivar-group) alpha... 46 0.024
gb|D49095.1|D49095 RICS15755A Rice green shoot Oryza sativa... 44 0.095
gb|AU030983.1|AU030983 AU030983 Rice cDNA from immature lea... 44 0.095
gb|AC145273.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.095
gb|AACV01011535.1| Oryza sativa (japonica cultivar-group) c... 44 0.095
ref|NT_107229.1| Oryza sativa (japonica cultivar-group) 44 0.095
gb|CH401200.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.095
>dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044E11, full
insert sequence
Length = 1416
Score = 212 bits (107), Expect = 2e-052
Identities = 159/175 (90%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||
Sbjct: 955 tcagttgaactgggccccgctgaaggtctggccgaaggaccagccacgggggacggcgtt 896
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 895 gttggagacgacggagcggccgtcgccggtggtgacgcggaaggagagcgcctgaccgtc 836
Query: 613 caggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgccac 666
||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 835 gaggagcgcggcgctctgccagttctggccccagttgcgcgacagggcctgccac 781
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 217 cagccttaccaccacttccaat 238
||||||||||||||||||||||
Sbjct: 1213 cagccttaccaccacttccaat 1192
>dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-F08, full
insert sequence
Length = 1290
Score = 212 bits (107), Expect = 2e-052
Identities = 159/175 (90%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||
Sbjct: 950 tcagttgaactgggccccgctgaaggtctggccgaaggaccagccacgggggacggcgtt 891
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 890 gttggagacgacggagcggccgtcgccggtggtgacgcggaaggagagcgcctgaccgtc 831
Query: 613 caggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgccac 666
||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 830 gaggagcgcggcgctctgccagttctggccccagttgcgcgacagggcctgccac 776
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 217 cagccttaccaccacttccaat 238
||||||||||||||||||||||
Sbjct: 1208 cagccttaccaccacttccaat 1187
>gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005399, whole
genome shotgun sequence
Length = 41834
Score = 212 bits (107), Expect = 2e-052
Identities = 159/175 (90%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||
Sbjct: 21602 tcagttgaactgggccccgctgaaggtctggccgaaggaccagccacgggggacggcgtt 21543
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 21542 gttggagacgacggagcggccgtcgccggtggtgacgcggaaggagagcgcctgaccgtc 21483
Query: 613 caggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgccac 666
||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 21482 gaggagcgcggcgctctgccagttctggccccagttgcgcgacagggcctgccac 21428
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 217 cagccttaccaccacttccaat 238
||||||||||||||||||||||
Sbjct: 21860 cagccttaccaccacttccaat 21839
>ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1289
Score = 212 bits (107), Expect = 2e-052
Identities = 159/175 (90%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||
Sbjct: 950 tcagttgaactgggccccgctgaaggtctggccgaaggaccagccacgggggacggcgtt 891
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 890 gttggagacgacggagcggccgtcgccggtggtgacgcggaaggagagcgcctgaccgtc 831
Query: 613 caggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgccac 666
||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 830 gaggagcgcggcgctctgccagttctggccccagttgcgcgacagggcctgccac 776
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 217 cagccttaccaccacttccaat 238
||||||||||||||||||||||
Sbjct: 1208 cagccttaccaccacttccaat 1187
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 212 bits (107), Expect = 2e-052
Identities = 159/175 (90%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||
Sbjct: 6405203 tcagttgaactgggccccgctgaaggtctggccgaaggaccagccacgggggacggcgtt 6405144
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 6405143 gttggagacgacggagcggccgtcgccggtggtgacgcggaaggagagcgcctgaccgtc 6405084
Query: 613 caggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgccac 666
||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6405083 gaggagcgcggcgctctgccagttctggccccagttgcgcgacagggcctgccac 6405029
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 217 cagccttaccaccacttccaat 238
||||||||||||||||||||||
Sbjct: 6405461 cagccttaccaccacttccaat 6405440
>ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1734_E02.30
mRNA
Length = 1417
Score = 212 bits (107), Expect = 2e-052
Identities = 159/175 (90%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||
Sbjct: 956 tcagttgaactgggccccgctgaaggtctggccgaaggaccagccacgggggacggcgtt 897
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 896 gttggagacgacggagcggccgtcgccggtggtgacgcggaaggagagcgcctgaccgtc 837
Query: 613 caggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgccac 666
||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 836 gaggagcgcggcgctctgccagttctggccccagttgcgcgacagggcctgccac 782
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 217 cagccttaccaccacttccaat 238
||||||||||||||||||||||
Sbjct: 1214 cagccttaccaccacttccaat 1193
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1118_G04
Length = 134464
Score = 212 bits (107), Expect = 2e-052
Identities = 159/175 (90%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||
Sbjct: 10072 tcagttgaactgggccccgctgaaggtctggccgaaggaccagccacgggggacggcgtt 10013
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 10012 gttggagacgacggagcggccgtcgccggtggtgacgcggaaggagagcgcctgaccgtc 9953
Query: 613 caggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgccac 666
||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9952 gaggagcgcggcgctctgccagttctggccccagttgcgcgacagggcctgccac 9898
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 217 cagccttaccaccacttccaat 238
||||||||||||||||||||||
Sbjct: 10330 cagccttaccaccacttccaat 10309
>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1734_E02
Length = 168566
Score = 212 bits (107), Expect = 2e-052
Identities = 159/175 (90%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||
Sbjct: 120047 tcagttgaactgggccccgctgaaggtctggccgaaggaccagccacgggggacggcgtt 119988
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 119987 gttggagacgacggagcggccgtcgccggtggtgacgcggaaggagagcgcctgaccgtc 119928
Query: 613 caggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgccac 666
||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 119927 gaggagcgcggcgctctgccagttctggccccagttgcgcgacagggcctgccac 119873
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 217 cagccttaccaccacttccaat 238
||||||||||||||||||||||
Sbjct: 120305 cagccttaccaccacttccaat 120284
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 212 bits (107), Expect = 2e-052
Identities = 159/175 (90%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||
Sbjct: 17796367 tcagttgaactgggccccgctgaaggtctggccgaaggaccagccacgggggacggcgtt 17796308
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 17796307 gttggagacgacggagcggccgtcgccggtggtgacgcggaaggagagcgcctgaccgtc 17796248
Query: 613 caggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgccac 666
||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 17796247 gaggagcgcggcgctctgccagttctggccccagttgcgcgacagggcctgccac 17796193
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 217 cagccttaccaccacttccaat 238
||||||||||||||||||||||
Sbjct: 17796625 cagccttaccaccacttccaat 17796604
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 212 bits (107), Expect = 2e-052
Identities = 159/175 (90%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||
Sbjct: 31249431 tcagttgaactgggccccgctgaaggtctggccgaaggaccagccacgggggacggcgtt 31249372
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 31249371 gttggagacgacggagcggccgtcgccggtggtgacgcggaaggagagcgcctgaccgtc 31249312
Query: 613 caggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgccac 666
||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 31249311 gaggagcgcggcgctctgccagttctggccccagttgcgcgacagggcctgccac 31249257
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 217 cagccttaccaccacttccaat 238
||||||||||||||||||||||
Sbjct: 31249689 cagccttaccaccacttccaat 31249668
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 212 bits (107), Expect = 2e-052
Identities = 159/175 (90%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||
Sbjct: 31240204 tcagttgaactgggccccgctgaaggtctggccgaaggaccagccacgggggacggcgtt 31240145
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 31240144 gttggagacgacggagcggccgtcgccggtggtgacgcggaaggagagcgcctgaccgtc 31240085
Query: 613 caggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgccac 666
||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 31240084 gaggagcgcggcgctctgccagttctggccccagttgcgcgacagggcctgccac 31240030
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 217 cagccttaccaccacttccaat 238
||||||||||||||||||||||
Sbjct: 31240462 cagccttaccaccacttccaat 31240441
>gb|CB645780.1|CB645780 OSJNEb07L24.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07L24 3', mRNA sequence
Length = 735
Score = 204 bits (103), Expect = 4e-050
Identities = 158/175 (90%), Gaps = 1/175 (0%)
Strand = Plus / Plus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggcagcgtt 552
||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||
Sbjct: 431 tcagttgaactgggccccgctgaaggtctggccgaaggaccagccacgggggacggcgtt 490
Query: 553 gctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtc 612
| ||||||| |||||||||||||| | ||||||||||||||||||||| ||||| |||||
Sbjct: 491 gttggagacgacggagcggccgtcaccggtggtgacgcggaaggagagcgcctgaccgtc 550
Query: 613 caggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgccac 666
||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 551 aaggagcgcggcgctctgccagttctggccccagttgcgcgacagggcctgccac 605
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 217 cagccttaccaccacttccaat 238
||||||||||||||||||||||
Sbjct: 173 cagccttaccaccacttccaat 194
>gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07L24 5', mRNA sequence
Length = 838
Score = 95.6 bits (48), Expect = 3e-017
Identities = 79/88 (89%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 580 ggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgctctgccagttctg 639
|||||||||||| |||||||| ||||| ||||| ||||||| | |||||||||||||||
Sbjct: 837 ggtggtgacgcgaaaggagagcgcctgaccgtcgaggagcgcggcgctctgccagttctg 778
Query: 640 gccccag-tgcgcgacagggcctgccac 666
|||||| ||||||||||||||||||||
Sbjct: 777 accccagttgcgcgacagggcctgccac 750
>gb|CV730571.1|CV730571 FLO--04-C21.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--04-C21,
mRNA sequence
Length = 506
Score = 93.7 bits (47), Expect = 1e-016
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| |||| || |
Sbjct: 296 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggaacgcg 237
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 236 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 190
>dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029P10, full
insert sequence
Length = 1311
Score = 93.7 bits (47), Expect = 1e-016
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| |||| || |
Sbjct: 737 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggaacgcg 678
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 677 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 631
>dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G10, full
insert sequence
Length = 2440
Score = 93.7 bits (47), Expect = 1e-016
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| |||| || |
Sbjct: 736 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggaacgcg 677
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 676 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 630
>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0018K15, complete sequence
Length = 168519
Score = 93.7 bits (47), Expect = 1e-016
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| |||| || |
Sbjct: 37966 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggaacgcg 38025
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 38026 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 38072
>gb|AACV01012416.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012416, whole
genome shotgun sequence
Length = 33179
Score = 93.7 bits (47), Expect = 1e-016
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| |||| || |
Sbjct: 10123 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggaacgcg 10064
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 10063 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 10017
>ref|XM_475418.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 741
Score = 93.7 bits (47), Expect = 1e-016
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| |||| || |
Sbjct: 674 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggaacgcg 615
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 614 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 568
>ref|NT_107213.1| Oryza sativa (japonica cultivar-group)
Length = 2036819
Score = 93.7 bits (47), Expect = 1e-016
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| |||| || |
Sbjct: 1906266 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggaacgcg 1906325
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 1906326 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 1906372
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 93.7 bits (47), Expect = 1e-016
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| |||| || |
Sbjct: 5728434 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggaacgcg 5728493
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 5728494 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 5728540
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 93.7 bits (47), Expect = 1e-016
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| |||| || |
Sbjct: 23028747 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggaacgcg 23028806
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 23028807 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 23028853
Score = 44.1 bits (22), Expect = 0.095
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 622 gttgctctgccagttctggccccagt 647
||||||||||||||| ||||||||||
Sbjct: 11514079 gttgctctgccagttttggccccagt 11514104
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 93.7 bits (47), Expect = 1e-016
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| |||| || |
Sbjct: 23352430 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggaacgcg 23352489
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 23352490 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 23352536
Score = 44.1 bits (22), Expect = 0.095
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 622 gttgctctgccagttctggccccagt 647
||||||||||||||| ||||||||||
Sbjct: 11318243 gttgctctgccagttttggccccagt 11318268
>dbj|AK107698.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-C08, full
insert sequence
Length = 1044
Score = 87.7 bits (44), Expect = 7e-015
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 565 ggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgtt 624
|||||||||||||| || |||||||||||||||||| |||| ||||| ||| || |||
Sbjct: 727 ggagcggccgtcgccggcggtgacgcggaaggagagcgccttgccgtcgaggtacgcgtt 668
Query: 625 gctctgccagttctggccccag-tgcgcgaca 655
||||||||||||||| |||||| |||||||||
Sbjct: 667 gctctgccagttctgcccccagttgcgcgaca 636
>gb|AACV01006557.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006557, whole
genome shotgun sequence
Length = 7954
Score = 87.7 bits (44), Expect = 7e-015
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 565 ggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgtt 624
|||||||||||||| || |||||||||||||||||| |||| ||||| ||| || |||
Sbjct: 6817 ggagcggccgtcgccggcggtgacgcggaaggagagcgccttgccgtcgaggtacgcgtt 6758
Query: 625 gctctgccagttctggccccag-tgcgcgaca 655
||||||||||||||| |||||| |||||||||
Sbjct: 6757 gctctgccagttctgcccccagttgcgcgaca 6726
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 87.7 bits (44), Expect = 7e-015
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 565 ggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgtt 624
|||||||||||||| || |||||||||||||||||| |||| ||||| ||| || |||
Sbjct: 3786483 ggagcggccgtcgccggcggtgacgcggaaggagagcgccttgccgtcgaggtacgcgtt 3786542
Query: 625 gctctgccagttctggccccag-tgcgcgaca 655
||||||||||||||| |||||| |||||||||
Sbjct: 3786543 gctctgccagttctgcccccagttgcgcgaca 3786574
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 87.7 bits (44), Expect = 7e-015
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 565 ggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgtt 624
|||||||||||||| || |||||||||||||||||| |||| ||||| ||| || |||
Sbjct: 12579136 ggagcggccgtcgccggcggtgacgcggaaggagagcgccttgccgtcgaggtacgcgtt 12579195
Query: 625 gctctgccagttctggccccag-tgcgcgaca 655
||||||||||||||| |||||| |||||||||
Sbjct: 12579196 gctctgccagttctgcccccagttgcgcgaca 12579227
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 87.7 bits (44), Expect = 7e-015
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 565 ggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgtt 624
|||||||||||||| || |||||||||||||||||| |||| ||||| ||| || |||
Sbjct: 12771498 ggagcggccgtcgccggcggtgacgcggaaggagagcgccttgccgtcgaggtacgcgtt 12771557
Query: 625 gctctgccagttctggccccag-tgcgcgaca 655
||||||||||||||| |||||| |||||||||
Sbjct: 12771558 gctctgccagttctgcccccagttgcgcgaca 12771589
Score = 56.0 bits (28), Expect = 3e-005
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 568 gcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgct 627
||||| ||||||| |||||||||||| ||||| ||||| ||| | |||| | ||||
Sbjct: 35157076 gcggcggtcgctgccggtgacgcggaacgagagcgcctggccgacgaggacggagttgga 35157135
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 35157136 ctgccagttctggccccagt 35157155
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 602 gcctgcccgtccaggagcgtgttgctctgccagttctggccccagt 647
||||||||||| || |||| | |||||||||||||||||||||||
Sbjct: 15401043 gcctgcccgtcgagcagcgcgccgctctgccagttctggccccagt 15400998
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14,
complete sequence
Length = 132560
Score = 87.7 bits (44), Expect = 7e-015
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 565 ggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgtt 624
|||||||||||||| || |||||||||||||||||| |||| ||||| ||| || |||
Sbjct: 101905 ggagcggccgtcgccggcggtgacgcggaaggagagcgccttgccgtcgaggtacgcgtt 101964
Query: 625 gctctgccagttctggccccag-tgcgcgaca 655
||||||||||||||| |||||| |||||||||
Sbjct: 101965 gctctgccagttctgcccccagttgcgcgaca 101996
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 87.7 bits (44), Expect = 7e-015
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 565 ggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgtt 624
|||||||||||||| || |||||||||||||||||| |||| ||||| ||| || |||
Sbjct: 12440986 ggagcggccgtcgccggcggtgacgcggaaggagagcgccttgccgtcgaggtacgcgtt 12441045
Query: 625 gctctgccagttctggccccag-tgcgcgaca 655
||||||||||||||| |||||| |||||||||
Sbjct: 12441046 gctctgccagttctgcccccagttgcgcgaca 12441077
Score = 56.0 bits (28), Expect = 3e-005
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 568 gcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgct 627
||||| ||||||| |||||||||||| ||||| ||||| ||| | |||| | ||||
Sbjct: 34295562 gcggcggtcgctgccggtgacgcggaacgagagcgcctggccgacgaggacggagttgga 34295621
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 34295622 ctgccagttctggccccagt 34295641
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 602 gcctgcccgtccaggagcgtgttgctctgccagttctggccccagt 647
||||||||||| || |||| | |||||||||||||||||||||||
Sbjct: 14728654 gcctgcccgtcgagcagcgcgccgctctgccagttctggccccagt 14728609
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 87.7 bits (44), Expect = 7e-015
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 565 ggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgtt 624
|||||||||||||| || |||||||||||||||||| |||| ||||| ||| || |||
Sbjct: 12444223 ggagcggccgtcgccggcggtgacgcggaaggagagcgccttgccgtcgaggtacgcgtt 12444282
Query: 625 gctctgccagttctggccccag-tgcgcgaca 655
||||||||||||||| |||||| |||||||||
Sbjct: 12444283 gctctgccagttctgcccccagttgcgcgaca 12444314
Score = 56.0 bits (28), Expect = 3e-005
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 568 gcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgct 627
||||| ||||||| |||||||||||| ||||| ||||| ||| | |||| | ||||
Sbjct: 34205090 gcggcggtcgctgccggtgacgcggaacgagagcgcctggccgacgaggacggagttgga 34205149
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 34205150 ctgccagttctggccccagt 34205169
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 602 gcctgcccgtccaggagcgtgttgctctgccagttctggccccagt 647
||||||||||| || |||| | |||||||||||||||||||||||
Sbjct: 14734120 gcctgcccgtcgagcagcgcgccgctctgccagttctggccccagt 14734075
>gb|AU031005.1|AU031005 AU031005 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60552_2Z, mRNA sequence
Length = 637
Score = 75.8 bits (38), Expect = 3e-011
Identities = 79/92 (85%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 565 ggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgtt 624
||| ||| |||||| || |||||||||||||||||| |||| ||||| ||| || |||
Sbjct: 165 ggancggncgtcgccggcggtgacgcggaaggagagcgccttgccgtcgaggtacgcgtt 106
Query: 625 gctctgccagttctggccccag-tgcgcgaca 655
||||||||||||||| |||||| |||||||||
Sbjct: 105 gctctgccagttctgcccccagntgcgcgaca 74
>gb|AU078691.1|AU078691 AU078691 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31813_10Z, mRNA sequence
Length = 556
Score = 61.9 bits (31), Expect = 4e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 493 tcagttgaactgggccccgctgaaggtctggccgaag 529
||||||||||| ||||||||| |||||||||||||||
Sbjct: 62 tcagttgaactnggccccgctnaaggtctggccgaag 26
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 217 cagccttaccaccacttccaat 238
||||||||||||||||||||||
Sbjct: 320 cagccttaccaccacttccaat 299
>dbj|AK070463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M24, full
insert sequence
Length = 1341
Score = 61.9 bits (31), Expect = 4e-007
Identities = 89/107 (83%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| || ||| ||||||||||| ||| ||||| ||| | |
Sbjct: 786 acggtgcggccgtcgctgacggcgacctggaaggagaggctctggccgtcgaggtaggag 727
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| || |||||||||
Sbjct: 726 ttgctctgccagttctggccccagttgcgggacatgggctgccaccc 680
>gb|U30477.1|OSU30477 Oryza sativa (japonica cultivar-group) expansin Os-EXPA2 (Os-EXPA2)
mRNA, complete cds
Length = 1323
Score = 61.9 bits (31), Expect = 4e-007
Identities = 89/107 (83%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| || ||| ||||||||||| ||| ||||| ||| | |
Sbjct: 771 acggtgcggccgtcgctgacggcgacctggaaggagaggctctggccgtcgaggtaggag 712
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| || |||||||||
Sbjct: 711 ttgctctgccagttctggccccagttgcgggacatgggctgccaccc 665
>gb|AACV01002595.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002595, whole
genome shotgun sequence
Length = 39811
Score = 61.9 bits (31), Expect = 4e-007
Identities = 89/107 (83%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| || ||| ||||||||||| ||| ||||| ||| | |
Sbjct: 9568 acggtgcggccgtcgctgacggcgacctggaaggagaggctctggccgtcgaggtaggag 9627
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| || |||||||||
Sbjct: 9628 ttgctctgccagttctggccccagttgcgggacatgggctgccaccc 9674
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 61.9 bits (31), Expect = 4e-007
Identities = 89/107 (83%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| || ||| ||||||||||| ||| ||||| ||| | |
Sbjct: 35220697 acggtgcggccgtcgctgacggcgacctggaaggagaggctctggccgtcgaggtaggag 35220638
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| || |||||||||
Sbjct: 35220637 ttgctctgccagttctggccccagttgcgggacatgggctgccaccc 35220591
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 602 gcctgcccgtccaggagcgtgttgctctgccagttctggccccagt 647
||||||||||| ||| ||| |||||||||||||||| ||||||||
Sbjct: 8193105 gcctgcccgtcgaggcgcgcgttgctctgccagttcgcgccccagt 8193150
Score = 46.1 bits (23), Expect = 0.024
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 514 gaaggtctggccgaagccccagccgcgcggggcagcgttgctggagaccacggagcggcc 573
|||||||||||||||| ||||||| ||||| ||||| |||| |||| ||||||
Sbjct: 9523664 gaaggtctggccgaaggaccagccggagggggcgacgttgtcggaggtgacggtgcggcc 9523605
Query: 574 gtcgctggtggtgacgcggaaggagag 600
|||||||| |||||| | |||||||||
Sbjct: 9523604 gtcgctggcggtgaccctgaaggagag 9523578
>ref|NM_190380.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 756
Score = 61.9 bits (31), Expect = 4e-007
Identities = 89/107 (83%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| || ||| ||||||||||| ||| ||||| ||| | |
Sbjct: 689 acggtgcggccgtcgctgacggcgacctggaaggagaggctctggccgtcgaggtaggag 630
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| || |||||||||
Sbjct: 629 ttgctctgccagttctggccccagttgcgggacatgggctgccaccc 583
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 61.9 bits (31), Expect = 4e-007
Identities = 89/107 (83%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| || ||| ||||||||||| ||| ||||| ||| | |
Sbjct: 9668080 acggtgcggccgtcgctgacggcgacctggaaggagaggctctggccgtcgaggtaggag 9668021
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| || |||||||||
Sbjct: 9668020 ttgctctgccagttctggccccagttgcgggacatgggctgccaccc 9667974
>dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485B12
Length = 156047
Score = 61.9 bits (31), Expect = 4e-007
Identities = 89/107 (83%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| || ||| ||||||||||| ||| ||||| ||| | |
Sbjct: 147177 acggtgcggccgtcgctgacggcgacctggaaggagaggctctggccgtcgaggtaggag 147118
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| || |||||||||
Sbjct: 147117 ttgctctgccagttctggccccagttgcgggacatgggctgccaccc 147071
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0031D02
Length = 183692
Score = 61.9 bits (31), Expect = 4e-007
Identities = 89/107 (83%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| || ||| ||||||||||| ||| ||||| ||| | |
Sbjct: 19111 acggtgcggccgtcgctgacggcgacctggaaggagaggctctggccgtcgaggtaggag 19052
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| || |||||||||
Sbjct: 19051 ttgctctgccagttctggccccagttgcgggacatgggctgccaccc 19005
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 61.9 bits (31), Expect = 4e-007
Identities = 89/107 (83%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| || ||| ||||||||||| ||| ||||| ||| | |
Sbjct: 9436126 acggtgcggccgtcgctgacggcgacctggaaggagaggctctggccgtcgaggtaggag 9436067
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| || |||||||||
Sbjct: 9436066 ttgctctgccagttctggccccagttgcgggacatgggctgccaccc 9436020
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 61.9 bits (31), Expect = 4e-007
Identities = 89/107 (83%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| || ||| ||||||||||| ||| ||||| ||| | |
Sbjct: 34637847 acggtgcggccgtcgctgacggcgacctggaaggagaggctctggccgtcgaggtaggag 34637788
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| || |||||||||
Sbjct: 34637787 ttgctctgccagttctggccccagttgcgggacatgggctgccaccc 34637741
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 602 gcctgcccgtccaggagcgtgttgctctgccagttctggccccagt 647
||||||||||| ||| ||| |||||||||||||||| ||||||||
Sbjct: 8243646 gcctgcccgtcgaggcgcgcgttgctctgccagttcgcgccccagt 8243691
Score = 46.1 bits (23), Expect = 0.024
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 514 gaaggtctggccgaagccccagccgcgcggggcagcgttgctggagaccacggagcggcc 573
|||||||||||||||| ||||||| ||||| ||||| |||| |||| ||||||
Sbjct: 9573378 gaaggtctggccgaaggaccagccggagggggcgacgttgtcggaggtgacggtgcggcc 9573319
Query: 574 gtcgctggtggtgacgcggaaggagag 600
|||||||| |||||| | |||||||||
Sbjct: 9573318 gtcgctggcggtgaccctgaaggagag 9573292
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 61.9 bits (31), Expect = 4e-007
Identities = 89/107 (83%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| || ||| ||||||||||| ||| ||||| ||| | |
Sbjct: 35140027 acggtgcggccgtcgctgacggcgacctggaaggagaggctctggccgtcgaggtaggag 35139968
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| |||| |||| || |||||||||
Sbjct: 35139967 ttgctctgccagttctggccccagttgcgggacatgggctgccaccc 35139921
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 602 gcctgcccgtccaggagcgtgttgctctgccagttctggccccagt 647
||||||||||| ||| ||| |||||||||||||||| ||||||||
Sbjct: 8195323 gcctgcccgtcgaggcgcgcgttgctctgccagttcgcgccccagt 8195368
Score = 46.1 bits (23), Expect = 0.024
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 514 gaaggtctggccgaagccccagccgcgcggggcagcgttgctggagaccacggagcggcc 573
|||||||||||||||| ||||||| ||||| ||||| |||| |||| ||||||
Sbjct: 9525882 gaaggtctggccgaaggaccagccggagggggcgacgttgtcggaggtgacggtgcggcc 9525823
Query: 574 gtcgctggtggtgacgcggaaggagag 600
|||||||| |||||| | |||||||||
Sbjct: 9525822 gtcgctggcggtgaccctgaaggagag 9525796
>gb|AU078738.1|AU078738 AU078738 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4917_8Z, mRNA sequence
Length = 637
Score = 58.0 bits (29), Expect = 6e-006
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| || ||| ||||||||||| ||| ||||| ||| | |
Sbjct: 95 acggtgcggccgtcgctgacggcgacctggaaggagaggctctggccgtcgaggtaggag 36
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 35 ttgctctgccagttctggccccagt 11
>gb|AU081601.1|AU081601 AU081601 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S0721_2Z, mRNA sequence
Length = 704
Score = 58.0 bits (29), Expect = 6e-006
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||||||||||||| || ||| ||||||||||| ||| ||||| ||| | |
Sbjct: 157 acggtgcggccgtcgctgacggcgacctggaaggagaggctctggccgtcgaggtaggag 98
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 97 ttgctctgccagttctggccccagt 73
>gb|C25149.1|C25149 C25149 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S5436_2A, mRNA sequence
Length = 428
Score = 56.0 bits (28), Expect = 3e-005
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 622 gttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
||||||||||||||||||||||||| |||| |||| || |||||||||
Sbjct: 212 gttgctctgccagttctggccccagttgcgggacatgggctgccaccc 165
>dbj|AK063455.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G06, full
insert sequence
Length = 1653
Score = 56.0 bits (28), Expect = 3e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgct 627
||||| ||||||| |||||||||||| ||||| ||||| ||| | |||| | ||||
Sbjct: 274 gcggcggtcgctgccggtgacgcggaacgagagcgcctggccgacgaggacggagttgga 215
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 214 ctgccagttctggccccagt 195
>dbj|AK101784.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065B20, full
insert sequence
Length = 1319
Score = 56.0 bits (28), Expect = 3e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgct 627
||||| ||||||| |||||||||||| ||||| ||||| ||| | |||| | ||||
Sbjct: 939 gcggcggtcgctgccggtgacgcggaacgagagcgcctggccgacgaggacggagttgga 880
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 879 ctgccagttctggccccagt 860
>dbj|AK119215.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G10, full
insert sequence
Length = 1366
Score = 56.0 bits (28), Expect = 3e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgct 627
||||| ||||||| |||||||||||| ||||| ||||| ||| | |||| | ||||
Sbjct: 762 gcggcggtcgctgccggtgacgcggaacgagagcgcctggccgacgaggacggagttgga 703
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 702 ctgccagttctggccccagt 683
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 745,422
Number of Sequences: 438736
Number of extensions: 745422
Number of successful extensions: 9629
Number of sequences better than 0.5: 79
Number of HSP's better than 0.5 without gapping: 87
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8930
Number of HSP's gapped (non-prelim): 675
length of query: 668
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 647
effective length of database: 2,791,206,460
effective search space: 1805910579620
effective search space used: 1805910579620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)