BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594147.2.1
(744 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OS... 101 5e-019
gb|AACV01007462.1| Oryza sativa (japonica cultivar-group) c... 101 5e-019
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 101 5e-019
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 101 5e-019
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 101 5e-019
dbj|AK101313.1| Oryza sativa (japonica cultivar-group) cDNA... 90 2e-015
gb|AACV01010248.1| Oryza sativa (japonica cultivar-group) c... 88 8e-015
ref|XM_473433.1| Oryza sativa (japonica cultivar-group), p... 88 8e-015
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 88 8e-015
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 88 8e-015
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 88 8e-015
emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromoso... 88 8e-015
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 88 8e-015
gb|AU166149.1|AU166149 AU166149 Rice panicle shorter than 3... 86 3e-014
gb|AACV01011389.1| Oryza sativa (japonica cultivar-group) c... 82 5e-013
gb|AC119290.2| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
gb|CH401195.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 82 5e-013
gb|AU029651.1|AU029651 AU029651 Rice panicle shorter than 3... 78 8e-012
dbj|AP005289.2| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
gb|AACV01005076.1| Oryza sativa (japonica cultivar-group) c... 62 5e-007
ref|XM_467144.1| Oryza sativa (japonica cultivar-group), mRNA 62 5e-007
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 62 5e-007
dbj|AP005072.3| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
gb|AU163434.1|AU163434 AU163434 Rice panicle at flowering s... 46 0.027
gb|CD670812.1|CD670812 OsMR231 5MT resistant rice mutant cD... 46 0.027
gb|AACV01010249.1| Oryza sativa (japonica cultivar-group) c... 46 0.027
ref|XM_473434.1| Oryza sativa (japonica cultivar-group), p... 46 0.027
gb|AU093795.1|AU093795 AU093795 Rice panicle at flowering s... 44 0.11
gb|AU094059.1|AU094059 AU094059 Rice panicle at flowering s... 44 0.11
gb|AU165453.1|AU165453 AU165453 Rice panicle at flowering s... 44 0.11
gb|AU182569.1|AU182569 AU182569 Rice panicle at flowering s... 44 0.11
dbj|AK070187.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
dbj|AK099112.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15... 44 0.11
gb|AACV01022050.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
ref|NM_197637.1| Oryza sativa (japonica cultivar-group) bet... 44 0.11
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 44 0.11
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
chromosome 3 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 183327
Score = 101 bits (51), Expect = 5e-019
Identities = 126/151 (83%)
Strand = Plus / Minus
Query: 303 ggtacgcgacgccggcgttccaccccgcaggtatggcgttgctggcgacgagcgccctgc 362
||||||| | ||||| ||||||||| || ||||||||||||||||| || | | | ||
Sbjct: 81395 ggtacgccatgccggggttccaccctgccggtatggcgttgctggcaacaaacatctggc 81336
Query: 363 cagagctgaaggtgaggcggatgttgaaggggccctggaggacggagccggagttgatct 422
| |||||||| || ||||||| | ||| |||||||| ||| ||||||||||||||| |
Sbjct: 81335 cggagctgaacgtcaggcggacggagaacgggccctgcagggcggagccggagttgagcc 81276
Query: 423 tccacacggcgccccacgactgctgcatcgg 453
||||||| |||||||| ||||||||||||||
Sbjct: 81275 tccacactgcgccccatgactgctgcatcgg 81245
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 524 tcgtactcgatcagcacggccaggtagttcgggttggagcc 564
|||||||| | ||||| ||||||||||||||||||||||||
Sbjct: 81174 tcgtactccaccagcagggccaggtagttcgggttggagcc 81134
Score = 56.0 bits (28), Expect = 3e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 672 tcgccaaggcaccgaacgctgtcccgctcatgtcgaagtg 711
|||||| ||||||||| ||||||||||||||||| |||||
Sbjct: 80837 tcgccatggcaccgaatgctgtcccgctcatgtcaaagtg 80798
>gb|AACV01007462.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007462, whole
genome shotgun sequence
Length = 20053
Score = 101 bits (51), Expect = 5e-019
Identities = 126/151 (83%)
Strand = Plus / Minus
Query: 303 ggtacgcgacgccggcgttccaccccgcaggtatggcgttgctggcgacgagcgccctgc 362
||||||| | ||||| ||||||||| || ||||||||||||||||| || | | | ||
Sbjct: 7179 ggtacgccatgccggggttccaccctgccggtatggcgttgctggcaacaaacatctggc 7120
Query: 363 cagagctgaaggtgaggcggatgttgaaggggccctggaggacggagccggagttgatct 422
| |||||||| || ||||||| | ||| |||||||| ||| ||||||||||||||| |
Sbjct: 7119 cggagctgaacgtcaggcggacggagaacgggccctgcagggcggagccggagttgagcc 7060
Query: 423 tccacacggcgccccacgactgctgcatcgg 453
||||||| |||||||| ||||||||||||||
Sbjct: 7059 tccacactgcgccccatgactgctgcatcgg 7029
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 524 tcgtactcgatcagcacggccaggtagttcgggttggagcc 564
|||||||| | ||||| ||||||||||||||||||||||||
Sbjct: 6958 tcgtactccaccagcagggccaggtagttcgggttggagcc 6918
Score = 56.0 bits (28), Expect = 3e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 672 tcgccaaggcaccgaacgctgtcccgctcatgtcgaagtg 711
|||||| ||||||||| ||||||||||||||||| |||||
Sbjct: 6621 tcgccatggcaccgaatgctgtcccgctcatgtcaaagtg 6582
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 101 bits (51), Expect = 5e-019
Identities = 126/151 (83%)
Strand = Plus / Minus
Query: 303 ggtacgcgacgccggcgttccaccccgcaggtatggcgttgctggcgacgagcgccctgc 362
||||||| | ||||| ||||||||| || ||||||||||||||||| || | | | ||
Sbjct: 11209894 ggtacgccatgccggggttccaccctgccggtatggcgttgctggcaacaaacatctggc 11209835
Query: 363 cagagctgaaggtgaggcggatgttgaaggggccctggaggacggagccggagttgatct 422
| |||||||| || ||||||| | ||| |||||||| ||| ||||||||||||||| |
Sbjct: 11209834 cggagctgaacgtcaggcggacggagaacgggccctgcagggcggagccggagttgagcc 11209775
Query: 423 tccacacggcgccccacgactgctgcatcgg 453
||||||| |||||||| ||||||||||||||
Sbjct: 11209774 tccacactgcgccccatgactgctgcatcgg 11209744
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 524 tcgtactcgatcagcacggccaggtagttcgggttggagcc 564
|||||||| | ||||| ||||||||||||||||||||||||
Sbjct: 11209673 tcgtactccaccagcagggccaggtagttcgggttggagcc 11209633
Score = 56.0 bits (28), Expect = 3e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 672 tcgccaaggcaccgaacgctgtcccgctcatgtcgaagtg 711
|||||| ||||||||| ||||||||||||||||| |||||
Sbjct: 11209336 tcgccatggcaccgaatgctgtcccgctcatgtcaaagtg 11209297
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 101 bits (51), Expect = 5e-019
Identities = 126/151 (83%)
Strand = Plus / Minus
Query: 303 ggtacgcgacgccggcgttccaccccgcaggtatggcgttgctggcgacgagcgccctgc 362
||||||| | ||||| ||||||||| || ||||||||||||||||| || | | | ||
Sbjct: 25260601 ggtacgccatgccggggttccaccctgccggtatggcgttgctggcaacaaacatctggc 25260542
Query: 363 cagagctgaaggtgaggcggatgttgaaggggccctggaggacggagccggagttgatct 422
| |||||||| || ||||||| | ||| |||||||| ||| ||||||||||||||| |
Sbjct: 25260541 cggagctgaacgtcaggcggacggagaacgggccctgcagggcggagccggagttgagcc 25260482
Query: 423 tccacacggcgccccacgactgctgcatcgg 453
||||||| |||||||| ||||||||||||||
Sbjct: 25260481 tccacactgcgccccatgactgctgcatcgg 25260451
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 524 tcgtactcgatcagcacggccaggtagttcgggttggagcc 564
|||||||| | ||||| ||||||||||||||||||||||||
Sbjct: 25260380 tcgtactccaccagcagggccaggtagttcgggttggagcc 25260340
Score = 56.0 bits (28), Expect = 3e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 672 tcgccaaggcaccgaacgctgtcccgctcatgtcgaagtg 711
|||||| ||||||||| ||||||||||||||||| |||||
Sbjct: 25260043 tcgccatggcaccgaatgctgtcccgctcatgtcaaagtg 25260004
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 101 bits (51), Expect = 5e-019
Identities = 126/151 (83%)
Strand = Plus / Minus
Query: 303 ggtacgcgacgccggcgttccaccccgcaggtatggcgttgctggcgacgagcgccctgc 362
||||||| | ||||| ||||||||| || ||||||||||||||||| || | | | ||
Sbjct: 24702706 ggtacgccatgccggggttccaccctgccggtatggcgttgctggcaacaaacatctggc 24702647
Query: 363 cagagctgaaggtgaggcggatgttgaaggggccctggaggacggagccggagttgatct 422
| |||||||| || ||||||| | ||| |||||||| ||| ||||||||||||||| |
Sbjct: 24702646 cggagctgaacgtcaggcggacggagaacgggccctgcagggcggagccggagttgagcc 24702587
Query: 423 tccacacggcgccccacgactgctgcatcgg 453
||||||| |||||||| ||||||||||||||
Sbjct: 24702586 tccacactgcgccccatgactgctgcatcgg 24702556
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 524 tcgtactcgatcagcacggccaggtagttcgggttggagcc 564
|||||||| | ||||| ||||||||||||||||||||||||
Sbjct: 24702485 tcgtactccaccagcagggccaggtagttcgggttggagcc 24702445
Score = 56.0 bits (28), Expect = 3e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 672 tcgccaaggcaccgaacgctgtcccgctcatgtcgaagtg 711
|||||| ||||||||| ||||||||||||||||| |||||
Sbjct: 24702148 tcgccatggcaccgaatgctgtcccgctcatgtcaaagtg 24702109
>dbj|AK101313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034A12, full
insert sequence
Length = 1250
Score = 89.7 bits (45), Expect = 2e-015
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 604 gcactgcacccgggtatactggatttggatggcgccggcgccacgcagctggctctcctg 663
|||| |||||||| | ||||||||||||| | |||||||| | ||||||||| ||||
Sbjct: 579 gcacggcacccggttgtactggatttggaggacgccggcggcgcgcagctggtcggcctg 520
Query: 664 cccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggacctgctc 720
|| || ||||||| |||||||||||| |||||||||| ||||||||||||| ||||
Sbjct: 519 gccaggattcgccatggcaccgaacgccgtcccgctcaggtcgaagtggaccggctc 463
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 339 cgttgctggcgacgagcgccctgccagagctgaaggtgaggcggatgttgaaggggccct 398
|||||||||||||||||| | |||| |||||| | |||||||||||| || || |||
Sbjct: 838 cgttgctggcgacgagcgtcttgccggagctggacgtgaggcggatggagagcggcgcct 779
Query: 399 ggaggacggagccggagttgatcttccacacggcgccccacgactgctgcatcggc 454
| || | | ||||| | | | |||||| |||||||||||||||||||||||||||
Sbjct: 778 gcagcgccgcgccggcgctcagcttccagacggcgccccacgactgctgcatcggc 723
>gb|AACV01010248.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010248, whole
genome shotgun sequence
Length = 37264
Score = 87.7 bits (44), Expect = 8e-015
Identities = 110/132 (83%)
Strand = Plus / Plus
Query: 320 ttccaccccgcaggtatggcgttgctggcgacgagcgccctgccagagctgaaggtgagg 379
|||||||| | ||| ||| |||||||||||||||||| | |||| |||||| | ||||||
Sbjct: 1064 ttccacccggaagggatgacgttgctggcgacgagcgtcttgccggagctggacgtgagg 1123
Query: 380 cggatgttgaaggggccctggaggacggagccggagttgatcttccacacggcgccccac 439
|||||| ||| || |||| || | ||||||| ||| | |||||| ||||||||||||
Sbjct: 1124 cggatggagaacggcgcctgcagtgccgagccggcgttcagcttccagacggcgccccac 1183
Query: 440 gactgctgcatc 451
||||||||||||
Sbjct: 1184 gactgctgcatc 1195
Score = 73.8 bits (37), Expect = 1e-010
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 620 tactggatttggatggcgccggcgccacgcagctggctctcctgcccgggcttcgccaag 679
||||||||||||| | ||||||| | ||||||||| |||| ||||| ||||||| |
Sbjct: 1610 tactggatttggaggacgccggccgcgcgcagctggtcggcctggccggggttcgccatg 1669
Query: 680 gcaccgaacgctgtcccgctcatgtcgaagtggacctgctc 720
||||||||||| || ||||||| ||||||||||||| ||||
Sbjct: 1670 gcaccgaacgccgtgccgctcaggtcgaagtggaccggctc 1710
>ref|XM_473433.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 795
Score = 87.7 bits (44), Expect = 8e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 320 ttccaccccgcaggtatggcgttgctggcgacgagcgccctgccagagctgaaggtgagg 379
|||||||| | ||| ||| |||||||||||||||||| | |||| |||||| | ||||||
Sbjct: 758 ttccacccggaagggatgacgttgctggcgacgagcgtcttgccggagctggacgtgagg 699
Query: 380 cggatgttgaaggggccctggaggacggagccggagttgatcttccacacggcgccccac 439
|||||| ||| || |||| || | ||||||| ||| | |||||| ||||||||||||
Sbjct: 698 cggatggagaacggcgcctgcagtgccgagccggcgttcagcttccagacggcgccccac 639
Query: 440 gactgctgcatc 451
||||||||||||
Sbjct: 638 gactgctgcatc 627
Score = 73.8 bits (37), Expect = 1e-010
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 620 tactggatttggatggcgccggcgccacgcagctggctctcctgcccgggcttcgccaag 679
||||||||||||| | ||||||| | ||||||||| |||| ||||| ||||||| |
Sbjct: 464 tactggatttggaggacgccggccgcgcgcagctggtcggcctggccggggttcgccatg 405
Query: 680 gcaccgaacgctgtcccgctcatgtcgaagtggacctgctc 720
||||||||||| || ||||||| ||||||||||||| ||||
Sbjct: 404 gcaccgaacgccgtgccgctcaggtcgaagtggaccggctc 364
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 87.7 bits (44), Expect = 8e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 320 ttccaccccgcaggtatggcgttgctggcgacgagcgccctgccagagctgaaggtgagg 379
|||||||| | ||| ||| |||||||||||||||||| | |||| |||||| | ||||||
Sbjct: 1397078 ttccacccggaagggatgacgttgctggcgacgagcgtcttgccggagctggacgtgagg 1397019
Query: 380 cggatgttgaaggggccctggaggacggagccggagttgatcttccacacggcgccccac 439
|||||| ||| || |||| || | ||||||| ||| | |||||| ||||||||||||
Sbjct: 1397018 cggatggagaacggcgcctgcagtgccgagccggcgttcagcttccagacggcgccccac 1396959
Query: 440 gactgctgcatc 451
||||||||||||
Sbjct: 1396958 gactgctgcatc 1396947
Score = 73.8 bits (37), Expect = 1e-010
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 620 tactggatttggatggcgccggcgccacgcagctggctctcctgcccgggcttcgccaag 679
||||||||||||| | ||||||| | ||||||||| |||| ||||| ||||||| |
Sbjct: 1396532 tactggatttggaggacgccggccgcgcgcagctggtcggcctggccggggttcgccatg 1396473
Query: 680 gcaccgaacgctgtcccgctcatgtcgaagtggacctgctc 720
||||||||||| || ||||||| ||||||||||||| ||||
Sbjct: 1396472 gcaccgaacgccgtgccgctcaggtcgaagtggaccggctc 1396432
Score = 46.1 bits (23), Expect = 0.027
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 430 ggcgccccacgactgctgcatcg 452
|||||||||||||||||||||||
Sbjct: 1406580 ggcgccccacgactgctgcatcg 1406558
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 87.7 bits (44), Expect = 8e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 320 ttccaccccgcaggtatggcgttgctggcgacgagcgccctgccagagctgaaggtgagg 379
|||||||| | ||| ||| |||||||||||||||||| | |||| |||||| | ||||||
Sbjct: 5434643 ttccacccggaagggatgacgttgctggcgacgagcgtcttgccggagctggacgtgagg 5434584
Query: 380 cggatgttgaaggggccctggaggacggagccggagttgatcttccacacggcgccccac 439
|||||| ||| || |||| || | ||||||| ||| | |||||| ||||||||||||
Sbjct: 5434583 cggatggagaacggcgcctgcagtgccgagccggcgttcagcttccagacggcgccccac 5434524
Query: 440 gactgctgcatc 451
||||||||||||
Sbjct: 5434523 gactgctgcatc 5434512
Score = 73.8 bits (37), Expect = 1e-010
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 620 tactggatttggatggcgccggcgccacgcagctggctctcctgcccgggcttcgccaag 679
||||||||||||| | ||||||| | ||||||||| |||| ||||| ||||||| |
Sbjct: 5434097 tactggatttggaggacgccggccgcgcgcagctggtcggcctggccggggttcgccatg 5434038
Query: 680 gcaccgaacgctgtcccgctcatgtcgaagtggacctgctc 720
||||||||||| || ||||||| ||||||||||||| ||||
Sbjct: 5434037 gcaccgaacgccgtgccgctcaggtcgaagtggaccggctc 5433997
Score = 46.1 bits (23), Expect = 0.027
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 430 ggcgccccacgactgctgcatcg 452
|||||||||||||||||||||||
Sbjct: 5456337 ggcgccccacgactgctgcatcg 5456315
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 87.7 bits (44), Expect = 8e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 320 ttccaccccgcaggtatggcgttgctggcgacgagcgccctgccagagctgaaggtgagg 379
|||||||| | ||| ||| |||||||||||||||||| | |||| |||||| | ||||||
Sbjct: 24578742 ttccacccggaagggatgacgttgctggcgacgagcgtcttgccggagctggacgtgagg 24578683
Query: 380 cggatgttgaaggggccctggaggacggagccggagttgatcttccacacggcgccccac 439
|||||| ||| || |||| || | ||||||| ||| | |||||| ||||||||||||
Sbjct: 24578682 cggatggagaacggcgcctgcagtgccgagccggcgttcagcttccagacggcgccccac 24578623
Query: 440 gactgctgcatc 451
||||||||||||
Sbjct: 24578622 gactgctgcatc 24578611
Score = 73.8 bits (37), Expect = 1e-010
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 620 tactggatttggatggcgccggcgccacgcagctggctctcctgcccgggcttcgccaag 679
||||||||||||| | ||||||| | ||||||||| |||| ||||| ||||||| |
Sbjct: 24578196 tactggatttggaggacgccggccgcgcgcagctggtcggcctggccggggttcgccatg 24578137
Query: 680 gcaccgaacgctgtcccgctcatgtcgaagtggacctgctc 720
||||||||||| || ||||||| ||||||||||||| ||||
Sbjct: 24578136 gcaccgaacgccgtgccgctcaggtcgaagtggaccggctc 24578096
Score = 46.1 bits (23), Expect = 0.027
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 430 ggcgccccacgactgctgcatcg 452
|||||||||||||||||||||||
Sbjct: 24600436 ggcgccccacgactgctgcatcg 24600414
>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
complete sequence
Length = 173522
Score = 87.7 bits (44), Expect = 8e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 320 ttccaccccgcaggtatggcgttgctggcgacgagcgccctgccagagctgaaggtgagg 379
|||||||| | ||| ||| |||||||||||||||||| | |||| |||||| | ||||||
Sbjct: 51057 ttccacccggaagggatgacgttgctggcgacgagcgtcttgccggagctggacgtgagg 50998
Query: 380 cggatgttgaaggggccctggaggacggagccggagttgatcttccacacggcgccccac 439
|||||| ||| || |||| || | ||||||| ||| | |||||| ||||||||||||
Sbjct: 50997 cggatggagaacggcgcctgcagtgccgagccggcgttcagcttccagacggcgccccac 50938
Query: 440 gactgctgcatc 451
||||||||||||
Sbjct: 50937 gactgctgcatc 50926
Score = 73.8 bits (37), Expect = 1e-010
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 620 tactggatttggatggcgccggcgccacgcagctggctctcctgcccgggcttcgccaag 679
||||||||||||| | ||||||| | ||||||||| |||| ||||| ||||||| |
Sbjct: 50511 tactggatttggaggacgccggccgcgcgcagctggtcggcctggccggggttcgccatg 50452
Query: 680 gcaccgaacgctgtcccgctcatgtcgaagtggacctgctc 720
||||||||||| || ||||||| ||||||||||||| ||||
Sbjct: 50451 gcaccgaacgccgtgccgctcaggtcgaagtggaccggctc 50411
Score = 46.1 bits (23), Expect = 0.027
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 430 ggcgccccacgactgctgcatcg 452
|||||||||||||||||||||||
Sbjct: 60559 ggcgccccacgactgctgcatcg 60537
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 87.7 bits (44), Expect = 8e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 320 ttccaccccgcaggtatggcgttgctggcgacgagcgccctgccagagctgaaggtgagg 379
|||||||| | ||| ||| |||||||||||||||||| | |||| |||||| | ||||||
Sbjct: 27620428 ttccacccggaagggatgacgttgctggcgacgagcgtcttgccggagctggacgtgagg 27620369
Query: 380 cggatgttgaaggggccctggaggacggagccggagttgatcttccacacggcgccccac 439
|||||| ||| || |||| || | ||||||| ||| | |||||| ||||||||||||
Sbjct: 27620368 cggatggagaacggcgcctgcagtgccgagccggcgttcagcttccagacggcgccccac 27620309
Query: 440 gactgctgcatc 451
||||||||||||
Sbjct: 27620308 gactgctgcatc 27620297
Score = 73.8 bits (37), Expect = 1e-010
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 620 tactggatttggatggcgccggcgccacgcagctggctctcctgcccgggcttcgccaag 679
||||||||||||| | ||||||| | ||||||||| |||| ||||| ||||||| |
Sbjct: 27619882 tactggatttggaggacgccggccgcgcgcagctggtcggcctggccggggttcgccatg 27619823
Query: 680 gcaccgaacgctgtcccgctcatgtcgaagtggacctgctc 720
||||||||||| || ||||||| ||||||||||||| ||||
Sbjct: 27619822 gcaccgaacgccgtgccgctcaggtcgaagtggaccggctc 27619782
Score = 46.1 bits (23), Expect = 0.027
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 430 ggcgccccacgactgctgcatcg 452
|||||||||||||||||||||||
Sbjct: 27629930 ggcgccccacgactgctgcatcg 27629908
>gb|AU166149.1|AU166149 AU166149 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31973, mRNA sequence
Length = 641
Score = 85.7 bits (43), Expect = 3e-014
Identities = 124/151 (82%)
Strand = Plus / Minus
Query: 303 ggtacgcgacgccggcgttccaccccgcaggtatggcgttgctggcgacgagcgccctgc 362
||||||| | ||||| ||||||||| || ||||||||||||||||| || | | | ||
Sbjct: 321 ggtacgccatgccggggttccaccctgccggtatggcgttgctggcaacaaacatctggc 262
Query: 363 cagagctgaaggtgaggcggatgttgaaggggccctggaggacggagccggagttgatct 422
| |||||||| || ||||||| | ||| |||||||| ||| |||||| | |||||| |
Sbjct: 261 cggagctgaacgtcaggcggacggagaacgggccctgcagggcggagcggaagttgagcc 202
Query: 423 tccacacggcgccccacgactgctgcatcgg 453
||||||| |||||||| ||||||||||||||
Sbjct: 201 tccacactgcgccccatgactgctgcatcgg 171
>gb|AACV01011389.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011389, whole
genome shotgun sequence
Length = 22266
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 620 tactggatttggatggcgccggcgccacgcagctggctctcctgcccgggcttcgccaag 679
||||||||||||| | |||||||| | ||||||||| |||| || || ||||||| |
Sbjct: 4107 tactggatttggaggacgccggcggcgcgcagctggtcggcctggccaggattcgccatg 4166
Query: 680 gcaccgaacgctgtcccgctcatgtcgaagtggacctgctc 720
||||||||||| |||||||||| ||||||||||||| ||||
Sbjct: 4167 gcaccgaacgccgtcccgctcaggtcgaagtggaccggctc 4207
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 339 cgttgctggcgacgagcgccctgccagagctgaaggtgaggcggatgttgaaggggccct 398
|||||||||||||||||| | |||| |||||| | |||||||||||| || || |||
Sbjct: 3712 cgttgctggcgacgagcgtcttgccggagctggacgtgaggcggatggagagcggcgcct 3771
Query: 399 ggaggacggagccggagttgatcttccacacggcgccccacgactgctgcatcggc 454
| || | | ||||| | | | |||||| |||||||||||||||||||||||||||
Sbjct: 3772 gcagcgccgcgccggcgctcagcttccagacggcgccccacgactgctgcatcggc 3827
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06,
complete sequence
Length = 144457
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 620 tactggatttggatggcgccggcgccacgcagctggctctcctgcccgggcttcgccaag 679
||||||||||||| | |||||||| | ||||||||| |||| || || ||||||| |
Sbjct: 103247 tactggatttggaggacgccggcggcgcgcagctggtcggcctggccaggattcgccatg 103306
Query: 680 gcaccgaacgctgtcccgctcatgtcgaagtggacctgctc 720
||||||||||| |||||||||| ||||||||||||| ||||
Sbjct: 103307 gcaccgaacgccgtcccgctcaggtcgaagtggaccggctc 103347
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 339 cgttgctggcgacgagcgccctgccagagctgaaggtgaggcggatgttgaaggggccct 398
|||||||||||||||||| | |||| |||||| | |||||||||||| || || |||
Sbjct: 102852 cgttgctggcgacgagcgtcttgccggagctggacgtgaggcggatggagagcggcgcct 102911
Query: 399 ggaggacggagccggagttgatcttccacacggcgccccacgactgctgcatcggc 454
| || | | ||||| | | | |||||| |||||||||||||||||||||||||||
Sbjct: 102912 gcagcgccgcgccggcgctcagcttccagacggcgccccacgactgctgcatcggc 102967
>gb|CH401195.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000032 genomic
scaffold, whole genome shotgun sequence
Length = 1766531
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 620 tactggatttggatggcgccggcgccacgcagctggctctcctgcccgggcttcgccaag 679
||||||||||||| | |||||||| | ||||||||| |||| || || ||||||| |
Sbjct: 1013082 tactggatttggaggacgccggcggcgcgcagctggtcggcctggccaggattcgccatg 1013141
Query: 680 gcaccgaacgctgtcccgctcatgtcgaagtggacctgctc 720
||||||||||| |||||||||| ||||||||||||| ||||
Sbjct: 1013142 gcaccgaacgccgtcccgctcaggtcgaagtggaccggctc 1013182
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 339 cgttgctggcgacgagcgccctgccagagctgaaggtgaggcggatgttgaaggggccct 398
|||||||||||||||||| | |||| |||||| | |||||||||||| || || |||
Sbjct: 1012687 cgttgctggcgacgagcgtcttgccggagctggacgtgaggcggatggagagcggcgcct 1012746
Query: 399 ggaggacggagccggagttgatcttccacacggcgccccacgactgctgcatcggc 454
| || | | ||||| | | | |||||| |||||||||||||||||||||||||||
Sbjct: 1012747 gcagcgccgcgccggcgctcagcttccagacggcgccccacgactgctgcatcggc 1012802
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 620 tactggatttggatggcgccggcgccacgcagctggctctcctgcccgggcttcgccaag 679
||||||||||||| | |||||||| | ||||||||| |||| || || ||||||| |
Sbjct: 9814359 tactggatttggaggacgccggcggcgcgcagctggtcggcctggccaggattcgccatg 9814418
Query: 680 gcaccgaacgctgtcccgctcatgtcgaagtggacctgctc 720
||||||||||| |||||||||| ||||||||||||| ||||
Sbjct: 9814419 gcaccgaacgccgtcccgctcaggtcgaagtggaccggctc 9814459
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 339 cgttgctggcgacgagcgccctgccagagctgaaggtgaggcggatgttgaaggggccct 398
|||||||||||||||||| | |||| |||||| | |||||||||||| || || |||
Sbjct: 9813964 cgttgctggcgacgagcgtcttgccggagctggacgtgaggcggatggagagcggcgcct 9814023
Query: 399 ggaggacggagccggagttgatcttccacacggcgccccacgactgctgcatcggc 454
| || | | ||||| | | | |||||| |||||||||||||||||||||||||||
Sbjct: 9814024 gcagcgccgcgccggcgctcagcttccagacggcgccccacgactgctgcatcggc 9814079
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 620 tactggatttggatggcgccggcgccacgcagctggctctcctgcccgggcttcgccaag 679
||||||||||||| | |||||||| | ||||||||| |||| || || ||||||| |
Sbjct: 8770805 tactggatttggaggacgccggcggcgcgcagctggtcggcctggccaggattcgccatg 8770864
Query: 680 gcaccgaacgctgtcccgctcatgtcgaagtggacctgctc 720
||||||||||| |||||||||| ||||||||||||| ||||
Sbjct: 8770865 gcaccgaacgccgtcccgctcaggtcgaagtggaccggctc 8770905
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 339 cgttgctggcgacgagcgccctgccagagctgaaggtgaggcggatgttgaaggggccct 398
|||||||||||||||||| | |||| |||||| | |||||||||||| || || |||
Sbjct: 8770410 cgttgctggcgacgagcgtcttgccggagctggacgtgaggcggatggagagcggcgcct 8770469
Query: 399 ggaggacggagccggagttgatcttccacacggcgccccacgactgctgcatcggc 454
| || | | ||||| | | | |||||| |||||||||||||||||||||||||||
Sbjct: 8770470 gcagcgccgcgccggcgctcagcttccagacggcgccccacgactgctgcatcggc 8770525
>gb|AU029651.1|AU029651 AU029651 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31190_6Z, mRNA sequence
Length = 673
Score = 77.8 bits (39), Expect = 8e-012
Identities = 125/151 (82%), Gaps = 2/151 (1%)
Strand = Plus / Minus
Query: 303 ggtacgcgacgccggcgttccaccccgcaggtatggcgttgctggcgacgagcgccctgc 362
||||||| | ||||| ||||||||| || ||||||||||||||||| || | | | ||
Sbjct: 353 ggtacgccatgccggggttccaccctgccggtatggcgttgctggcaacaaacatctggc 294
Query: 363 cagagctgaaggtgaggcggatgttgaaggggccctggaggacggagccggagttgatct 422
| |||||||| || ||||||| | ||| |||||||| ||| |||||| |||||||| |
Sbjct: 293 cggagctgaacgtcaggcggacggagaacgggccctgcagg-cggagc-ggagttgagcc 236
Query: 423 tccacacggcgccccacgactgctgcatcgg 453
||||||| |||||||| ||||||||||||||
Sbjct: 235 tccacactgcgccccatgactgctgcatcgg 205
>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_F09
Length = 139371
Score = 61.9 bits (31), Expect = 5e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 410 ccggagttgatcttccacacggcgccccacgactgctgcatcg 452
||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 92500 ccggagttgtacttccacaccgcgccccacgactgctgcatcg 92458
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 659 tcctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggac 714
||||| ||||| || |||| ||| |||||||| |||||||||| ||||||||||||
Sbjct: 91954 tcctggccgggttttgccatggcgccgaacgccgtcccgctcaggtcgaagtggac 91899
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 299 gaccggtacgcgacgccggcgttccaccccgcaggtatggcgttgctggcgacgagcgcc 358
|||||||||| | |||||| | |||||| || || ||| |||||||||||||||||| |
Sbjct: 92614 gaccggtacgtgccgccgggctgccacccggcggggatgacgttgctggcgacgagcgtc 92555
Query: 359 ctgccagagctgaaggtgaggcggatg 385
| ||| |||| | | ||||||||||||
Sbjct: 92554 cggccggagccggacgtgaggcggatg 92528
>gb|AACV01005076.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005076, whole
genome shotgun sequence
Length = 21571
Score = 61.9 bits (31), Expect = 5e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 410 ccggagttgatcttccacacggcgccccacgactgctgcatcg 452
||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 2198 ccggagttgtacttccacaccgcgccccacgactgctgcatcg 2156
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 659 tcctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggac 714
||||| ||||| || |||| ||| |||||||| |||||||||| ||||||||||||
Sbjct: 1652 tcctggccgggttttgccatggcgccgaacgccgtcccgctcaggtcgaagtggac 1597
Score = 48.1 bits (24), Expect = 0.007
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 322 ccaccccgcaggtatggcgttgctggcgacgagcgccctgccagagctgaaggtgaggcg 381
|||||| || || ||| |||||||||||||||||| || ||| |||| | | ||||||||
Sbjct: 2289 ccacccggcggggatgacgttgctggcgacgagcgtccggccggagccggacgtgaggcg 2230
Query: 382 gatg 385
||||
Sbjct: 2229 gatg 2226
>ref|XM_467144.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 822
Score = 61.9 bits (31), Expect = 5e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 410 ccggagttgatcttccacacggcgccccacgactgctgcatcg 452
||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 680 ccggagttgtacttccacaccgcgccccacgactgctgcatcg 638
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 659 tcctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggac 714
||||| ||||| || |||| ||| |||||||| |||||||||| ||||||||||||
Sbjct: 428 tcctggccgggttttgccatggcgccgaacgccgtcccgctcaggtcgaagtggac 373
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 299 gaccggtacgcgacgccggcgttccaccccgcaggtatggcgttgctggcgacgagcgcc 358
|||||||||| | |||||| | |||||| || || ||| |||||||||||||||||| |
Sbjct: 794 gaccggtacgtgccgccgggctgccacccggcggggatgacgttgctggcgacgagcgtc 735
Query: 359 ctgccagagctgaaggtgaggcggatg 385
| ||| |||| | | ||||||||||||
Sbjct: 734 cggccggagccggacgtgaggcggatg 708
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 61.9 bits (31), Expect = 5e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 410 ccggagttgatcttccacacggcgccccacgactgctgcatcg 452
||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 1823338 ccggagttgtacttccacaccgcgccccacgactgctgcatcg 1823296
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 659 tcctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggac 714
||||| ||||| || |||| ||| |||||||| |||||||||| ||||||||||||
Sbjct: 1822792 tcctggccgggttttgccatggcgccgaacgccgtcccgctcaggtcgaagtggac 1822737
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 299 gaccggtacgcgacgccggcgttccaccccgcaggtatggcgttgctggcgacgagcgcc 358
|||||||||| | |||||| | |||||| || || ||| |||||||||||||||||| |
Sbjct: 1823452 gaccggtacgtgccgccgggctgccacccggcggggatgacgttgctggcgacgagcgtc 1823393
Query: 359 ctgccagagctgaaggtgaggcggatg 385
| ||| |||| | | ||||||||||||
Sbjct: 1823392 cggccggagccggacgtgaggcggatg 1823366
>dbj|AP005072.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0708H12
Length = 162381
Score = 61.9 bits (31), Expect = 5e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 410 ccggagttgatcttccacacggcgccccacgactgctgcatcg 452
||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 20369 ccggagttgtacttccacaccgcgccccacgactgctgcatcg 20327
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 659 tcctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggac 714
||||| ||||| || |||| ||| |||||||| |||||||||| ||||||||||||
Sbjct: 19823 tcctggccgggttttgccatggcgccgaacgccgtcccgctcaggtcgaagtggac 19768
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 299 gaccggtacgcgacgccggcgttccaccccgcaggtatggcgttgctggcgacgagcgcc 358
|||||||||| | |||||| | |||||| || || ||| |||||||||||||||||| |
Sbjct: 20483 gaccggtacgtgccgccgggctgccacccggcggggatgacgttgctggcgacgagcgtc 20424
Query: 359 ctgccagagctgaaggtgaggcggatg 385
| ||| |||| | | ||||||||||||
Sbjct: 20423 cggccggagccggacgtgaggcggatg 20397
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 61.9 bits (31), Expect = 5e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 410 ccggagttgatcttccacacggcgccccacgactgctgcatcg 452
||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 13112558 ccggagttgtacttccacaccgcgccccacgactgctgcatcg 13112516
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 659 tcctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggac 714
||||| ||||| || |||| ||| |||||||| |||||||||| ||||||||||||
Sbjct: 13112012 tcctggccgggttttgccatggcgccgaacgccgtcccgctcaggtcgaagtggac 13111957
Score = 48.1 bits (24), Expect = 0.007
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 322 ccaccccgcaggtatggcgttgctggcgacgagcgccctgccagagctgaaggtgaggcg 381
|||||| || || ||| |||||||||||||||||| || ||| |||| | | ||||||||
Sbjct: 13112649 ccacccggcggggatgacgttgctggcgacgagcgtccggccggagccggacgtgaggcg 13112590
Query: 382 gatg 385
||||
Sbjct: 13112589 gatg 13112586
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 61.9 bits (31), Expect = 5e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 410 ccggagttgatcttccacacggcgccccacgactgctgcatcg 452
||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 26565622 ccggagttgtacttccacaccgcgccccacgactgctgcatcg 26565580
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 659 tcctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggac 714
||||| ||||| || |||| ||| |||||||| |||||||||| ||||||||||||
Sbjct: 26565076 tcctggccgggttttgccatggcgccgaacgccgtcccgctcaggtcgaagtggac 26565021
Score = 48.1 bits (24), Expect = 0.007
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 322 ccaccccgcaggtatggcgttgctggcgacgagcgccctgccagagctgaaggtgaggcg 381
|||||| || || ||| |||||||||||||||||| || ||| |||| | | ||||||||
Sbjct: 26565713 ccacccggcggggatgacgttgctggcgacgagcgtccggccggagccggacgtgaggcg 26565654
Query: 382 gatg 385
||||
Sbjct: 26565653 gatg 26565650
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 61.9 bits (31), Expect = 5e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 410 ccggagttgatcttccacacggcgccccacgactgctgcatcg 452
||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 26658339 ccggagttgtacttccacaccgcgccccacgactgctgcatcg 26658297
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 659 tcctgcccgggcttcgccaaggcaccgaacgctgtcccgctcatgtcgaagtggac 714
||||| ||||| || |||| ||| |||||||| |||||||||| ||||||||||||
Sbjct: 26657793 tcctggccgggttttgccatggcgccgaacgccgtcccgctcaggtcgaagtggac 26657738
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 299 gaccggtacgcgacgccggcgttccaccccgcaggtatggcgttgctggcgacgagcgcc 358
|||||||||| | |||||| | |||||| || || ||| |||||||||||||||||| |
Sbjct: 26658453 gaccggtacgtgccgccgggctgccacccggcggggatgacgttgctggcgacgagcgtc 26658394
Query: 359 ctgccagagctgaaggtgaggcggatg 385
| ||| |||| | | ||||||||||||
Sbjct: 26658393 cggccggagccggacgtgaggcggatg 26658367
>gb|AU163434.1|AU163434 AU163434 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0513, mRNA sequence
Length = 645
Score = 46.1 bits (23), Expect = 0.027
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 136 agcacggcgaggtagttngggttggagccc 107
>gb|CD670812.1|CD670812 OsMR231 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 323
Score = 46.1 bits (23), Expect = 0.027
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 620 tactggatttggatggcgccggcgccacgcagctggctctcctgcccgggcttcgccaag 679
||||||||||||| | ||||||| | ||||||||| |||| ||||| ||||||| |
Sbjct: 125 tactggatttggaggacgccggccgcgcgcagctggtcggcctggccggggttcgccatg 66
Query: 680 gcaccgaacgc 690
|||||||||||
Sbjct: 65 gcaccgaacgc 55
>gb|AACV01010249.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010249, whole
genome shotgun sequence
Length = 24047
Score = 46.1 bits (23), Expect = 0.027
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 430 ggcgccccacgactgctgcatcg 452
|||||||||||||||||||||||
Sbjct: 20581 ggcgccccacgactgctgcatcg 20559
>ref|XM_473434.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 828
Score = 46.1 bits (23), Expect = 0.027
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 430 ggcgccccacgactgctgcatcg 452
|||||||||||||||||||||||
Sbjct: 669 ggcgccccacgactgctgcatcg 647
>gb|AU093795.1|AU093795 AU093795 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0533, mRNA sequence
Length = 553
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 44 agcacggcgaggtagtttgggttggagccc 15
>gb|AU094059.1|AU094059 AU094059 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2136, mRNA sequence
Length = 711
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 208 agcacggcgaggtagttggggttggagccc 179
>gb|AU165453.1|AU165453 AU165453 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1237, mRNA sequence
Length = 561
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 57 agcacggcgaggtagttggggttggagccc 28
>gb|AU182569.1|AU182569 AU182569 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4331, mRNA sequence
Length = 445
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 358 agcacggcgaggtagttggggttggagccc 329
>dbj|AK070187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043G12, full
insert sequence
Length = 1121
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 630 agcacggcgaggtagttggggttggagccc 601
>dbj|AK099112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033P05, full
insert sequence
Length = 1071
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 630 agcacggcgaggtagttggggttggagccc 601
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
sequence
Length = 158550
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 117269 agcacggcgaggtagttggggttggagccc 117298
>gb|AACV01022050.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022050, whole
genome shotgun sequence
Length = 7523
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 1179 agcacggcgaggtagttggggttggagccc 1208
>ref|NM_197637.1| Oryza sativa (japonica cultivar-group) beta-expansin
(OSJNBa0082M15.4), mRNA
Length = 1148
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 614 agcacggcgaggtagttggggttggagccc 585
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 2869316 agcacggcgaggtagttggggttggagccc 2869287
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 8899030 agcacggcgaggtagttggggttggagccc 8899001
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 19764824 agcacggcgaggtagttggggttggagccc 19764795
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 20947122 agcacggcgaggtagttggggttggagccc 20947093
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 44.1 bits (22), Expect = 0.11
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 536 agcacggccaggtagttcgggttggagccc 565
|||||||| |||||||| ||||||||||||
Sbjct: 20958386 agcacggcgaggtagttggggttggagccc 20958357
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 862,072
Number of Sequences: 438736
Number of extensions: 862072
Number of successful extensions: 4404
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4078
Number of HSP's gapped (non-prelim): 306
length of query: 744
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 723
effective length of database: 2,791,206,460
effective search space: 2018042270580
effective search space used: 2018042270580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)