BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591258.2.1
(819 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK108479.1| Oryza sativa (japonica cultivar-group) cDNA... 448 e-123
gb|AU070794.1|AU070794 AU070794 Rice cDNA from young root O... 248 4e-063
gb|AACV01020268.1| Oryza sativa (japonica cultivar-group) c... 228 4e-057
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 228 4e-057
dbj|AP005392.3| Oryza sativa (japonica cultivar-group) geno... 228 4e-057
dbj|AP005633.3| Oryza sativa (japonica cultivar-group) geno... 228 4e-057
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 228 4e-057
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 228 4e-057
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 228 4e-057
gb|AU182287.1|AU182287 AU182287 Rice panicle at flowering s... 168 3e-039
gb|CB653598.1|CB653598 OSJNEc04M15.f OSJNEc Oryza sativa (j... 168 3e-039
dbj|AK065744.1| Oryza sativa (japonica cultivar-group) cDNA... 168 3e-039
gb|CB653599.1|CB653599 OSJNEc04M15.r OSJNEc Oryza sativa (j... 157 1e-035
gb|AY644636.1| Oryza sativa (japonica cultivar-group) caffe... 157 1e-035
gb|AACV01013091.1| Oryza sativa (japonica cultivar-group) c... 157 1e-035
dbj|AB023482.2| Oryza sativa (japonica cultivar-group) geno... 157 1e-035
dbj|AP002536.2| Oryza sativa (japonica cultivar-group) geno... 157 1e-035
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 157 1e-035
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 157 1e-035
dbj|AK106735.1| Oryza sativa (japonica cultivar-group) cDNA... 131 7e-028
gb|AY644638.1| Oryza sativa (japonica cultivar-group) caffe... 131 7e-028
dbj|AP000364.1| Oryza sativa (japonica cultivar-group) geno... 131 7e-028
gb|AACV01018795.1| Oryza sativa (japonica cultivar-group) c... 131 7e-028
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 131 7e-028
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 131 7e-028
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 131 7e-028
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 131 7e-028
gb|CF293402.1|CF293402 30DGS--02-J06.g1 Rice leaf plasmid c... 117 1e-023
gb|CF308395.1|CF308395 ABF--02-D07.g1 ABF3-overexpressing t... 109 2e-021
gb|CO435814.1|CO435814 OsMR880 5MT resistant rice mutant cD... 109 2e-021
dbj|AK061757.1| Oryza sativa (japonica cultivar-group) cDNA... 109 2e-021
dbj|AK065515.1| Oryza sativa (japonica cultivar-group) cDNA... 109 2e-021
ref|XM_483169.1| Oryza sativa (japonica cultivar-group), mRNA 109 2e-021
ref|XM_483170.1| Oryza sativa (japonica cultivar-group), mRNA 109 2e-021
ref|XM_507282.1| PREDICTED Oryza sativa (japonica cultivar-... 109 2e-021
gb|AU101479.1|AU101479 AU101479 Rice immature leaf includin... 98 9e-018
gb|AU164542.1|AU164542 AU164542 Rice root Oryza sativa (jap... 98 9e-018
gb|CA755835.1|CA755835 BR030029000_PLATE_D01_4_012.ab1 OA O... 98 9e-018
gb|CB650397.1|CB650397 OSJNEb14N03.f OSJNEb Oryza sativa (j... 98 9e-018
gb|CB650869.1|CB650869 OSJNEb15J05.f OSJNEb Oryza sativa (j... 98 9e-018
gb|CB651300.1|CB651300 OSJNEb16D09.f OSJNEb Oryza sativa (j... 98 9e-018
gb|CB651301.1|CB651301 OSJNEb16D09.r OSJNEb Oryza sativa (j... 98 9e-018
gb|CB680447.1|CB680447 OSJNEf05C19.r OSJNEf Oryza sativa (j... 98 9e-018
gb|CF589246.1|CF589246 EST00H03 Subtracted cDNA library of ... 98 9e-018
gb|CV721863.1|CV721863 YBH--05-J11.b1 Rice before heading y... 98 9e-018
gb|BP184560.1|BP184560 BP184560 pNS rice panicle cDNA, flow... 98 9e-018
dbj|AK071482.1| Oryza sativa (japonica cultivar-group) cDNA... 98 9e-018
dbj|AK104326.1| Oryza sativa (japonica cultivar-group) cDNA... 98 9e-018
dbj|AK104801.1| Oryza sativa (japonica cultivar-group) cDNA... 98 9e-018
gb|AY644637.1| Oryza sativa (japonica cultivar-group) caffe... 98 9e-018
ref|XM_483167.1| Oryza sativa (japonica cultivar-group), mRNA 98 9e-018
ref|XM_507281.2| PREDICTED Oryza sativa (japonica cultivar-... 98 9e-018
ref|XM_507591.1| PREDICTED Oryza sativa (japonica cultivar-... 98 9e-018
dbj|AB110168.1| Oryza sativa (japonica cultivar-group) mRNA... 98 9e-018
gb|D48033.1|D48033 RICS13955A Rice green shoot Oryza sativa... 92 6e-016
gb|AU184482.1|AU184482 AU184482 Rice root Oryza sativa (jap... 92 6e-016
gb|CV721179.1|CV721179 YBH--03-D01.b1 Rice before heading y... 92 6e-016
gb|AU164541.1|AU164541 AU164541 Rice root Oryza sativa (jap... 90 2e-015
gb|AU197917.1|AU197917 AU197917 Rice green shoot Oryza sati... 90 2e-015
gb|AU197920.1|AU197920 AU197920 Rice green shoot Oryza sati... 90 2e-015
gb|AU198028.1|AU198028 AU198028 Rice green shoot Oryza sati... 90 2e-015
gb|BP184507.1|BP184507 BP184507 pNS rice panicle cDNA, germ... 90 2e-015
gb|BP184421.1|BP184421 BP184421 pNS rice panicle cDNA, germ... 84 1e-013
gb|AU095745.1|AU095745 AU095745 Rice green shoot Oryza sati... 82 5e-013
gb|AU095774.1|AU095774 AU095774 Rice green shoot Oryza sati... 82 5e-013
gb|AU096741.1|AU096741 AU096741 Rice green shoot Oryza sati... 82 5e-013
gb|AU162815.1|AU162815 AU162815 Rice green shoot Oryza sati... 82 5e-013
gb|AU162915.1|AU162915 AU162915 Rice green shoot Oryza sati... 82 5e-013
gb|AU095746.1|AU095746 AU095746 Rice green shoot Oryza sati... 80 2e-012
gb|AU182288.1|AU182288 AU182288 Rice panicle at flowering s... 76 3e-011
gb|CF312394.1|CF312394 ABF--08-C02.b1 ABF3-overexpressing t... 76 3e-011
gb|CF324904.1|CF324904 JMT1--01-M15.g1 AtJMT-overexpressing... 76 3e-011
gb|AU069930.1|AU069930 AU069930 Rice panicle (longer than 1... 72 5e-010
gb|CA756287.1|CA756287 BR030039000_PLATE_D05_36_044.ab1 OA ... 70 2e-009
gb|AU096666.1|AU096666 AU096666 Rice green shoot Oryza sati... 68 8e-009
gb|AU030740.1|AU030740 AU030740 Rice cDNA from immature lea... 66 3e-008
gb|AU197418.1|AU197418 AU197418 Rice cDNA from young root O... 64 1e-007
gb|CF312395.1|CF312395 ABF--08-C02.g1 ABF3-overexpressing t... 64 1e-007
gb|CF293401.1|CF293401 30DGS--02-J06.b1 Rice leaf plasmid c... 62 5e-007
gb|CV721193.1|CV721193 YBH--03-D16.b1 Rice before heading y... 62 5e-007
gb|CV728538.1|CV728538 COLD--01-N06.b1 Cold treated rice le... 62 5e-007
gb|BP184433.1|BP184433 BP184433 pNS rice panicle cDNA, flow... 62 5e-007
gb|AU197965.1|AU197965 AU197965 Rice green shoot Oryza sati... 56 3e-005
gb|CX728127.1|CX728127 OSJNEe01K02.r OSJNEe Oryza sativa (j... 56 3e-005
gb|AU057944.1|AU057944 AU057944 Oryza sativa mature leaf Ni... 54 1e-004
gb|D22878.1|D22878 RICC1706A Rice callus Oryza sativa (japo... 50 0.002
gb|CF308394.1|CF308394 ABF--02-D07.b1 ABF3-overexpressing t... 50 0.002
gb|BP184761.1|BP184761 BP184761 pNS rice panicle cDNA, germ... 50 0.002
gb|C99197.1|C99197 C99197 Rice panicle at ripening stage Or... 48 0.008
gb|AU030405.1|AU030405 AU030405 Rice cDNA from immature lea... 48 0.008
gb|AU032753.1|AU032753 AU032753 Rice green shoot Oryza sati... 48 0.008
gb|AU057626.1|AU057626 AU057626 Oryza sativa mature leaf Ni... 48 0.008
gb|AU096278.1|AU096278 AU096278 Rice green shoot Oryza sati... 48 0.008
gb|AU096701.1|AU096701 AU096701 Rice green shoot Oryza sati... 48 0.008
gb|AU197908.1|AU197908 AU197908 Rice green shoot Oryza sati... 48 0.008
gb|AU198011.1|AU198011 AU198011 Rice green shoot Oryza sati... 48 0.008
gb|CB682841.1|CB682841 OSJNEf10I23.f OSJNEf Oryza sativa (j... 48 0.008
gb|CX728657.1|CX728657 OSJNEf10I23.r OSJNEf Oryza sativa (j... 48 0.008
gb|D46209.1|D46209 RICS10737A Rice green shoot Oryza sativa... 46 0.030
gb|D47555.1|D47555 RICS13127A Rice green shoot Oryza sativa... 46 0.030
gb|D47599.1|D47599 RICS13186A Rice green shoot Oryza sativa... 46 0.030
gb|D48309.1|D48309 RICS14446A Rice green shoot Oryza sativa... 46 0.030
gb|D48645.1|D48645 RICS14978A Rice green shoot Oryza sativa... 46 0.030
gb|D48758.1|D48758 RICS15150A Rice green shoot Oryza sativa... 46 0.030
gb|AU030254.1|AU030254 AU030254 Rice cDNA from immature lea... 46 0.030
gb|AU057625.1|AU057625 AU057625 Oryza sativa mature leaf Ni... 46 0.030
gb|AU057943.1|AU057943 AU057943 Oryza sativa mature leaf Ni... 46 0.030
gb|BP184412.1|BP184412 BP184412 pNS rice panicle cDNA, germ... 46 0.030
gb|AACV01026954.1| Oryza sativa (japonica cultivar-group) C... 44 0.12
gb|AU095820.1|AU095820 AU095820 Rice green shoot Oryza sati... 42 0.47
>dbj|AK108479.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F02, full
insert sequence
Length = 959
Score = 448 bits (226), Expect = e-123
Identities = 386/438 (88%), Gaps = 1/438 (0%)
Strand = Plus / Minus
Query: 318 ggcgcggccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctg 377
||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 667 ggcgccgccaccgagccgccccacagcgtgttgtcgtaggcgatgaggccgccgaccctg 608
Query: 378 agcagctgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaac 437
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 607 accagctgcagcagccgctcgtggtagccgaggaagttcaccttgtccgcgtccacgaac 548
Query: 438 gcgaagtcgaacttgcccttgttcccctcctcggaaaccatctggtccagcacgggcagc 497
|||||||||||| | ||||||||||||||||||| || | || ||| ||||| ||||
Sbjct: 547 gcgaagtcgaacctccccttgttcccctcctcggcgacgagctcgtcgagcaccggcatg 488
Query: 498 gcgagcccgacgcggaagtcgatcttgtgcgccacgccggccttctcgatcaccggcgac 557
||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 487 gcgaggccgacgcggaagtcgaccttgtgcgccacgccggccttgtcgatcaccggcgct 428
Query: 558 ccaatctggtcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcgggg 617
|| | || |||||||||||| ||| | |||||||||||||| |||||||||||||| |||
Sbjct: 427 ccgacctcgtcgtagctctcccggctcacgtcgatggccacgatcttgccgtcgtcaggg 368
Query: 618 agggcgagggcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgtt 677
|| |||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 367 agcgcgagggcggtg-gcgagcagcgagtacccggtgaacacgccgacctcgatggcgtt 309
Query: 678 cttggcgccaagaatctcgatcaggagctgcagcagctgcacctcgtccggcgacgcagc 737
|||||||| | | ||||||||| || | ||||||||||| |||||||| || ||
Sbjct: 308 cttggcgctgatcagctcgatcagaaggccgaacagctgcacctgatccggcgaggccgc 249
Query: 738 catgcccgccatggggtg 755
|||| |||||||||||||
Sbjct: 248 catgaccgccatggggtg 231
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 180 acgcggcggcacagcgngagcccgtcggcgatggcgacctggca-gacgtgaacgcgggg 238
||||||||||| ||| || |||||||||||||||| |||||| | | || |||||| |
Sbjct: 817 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttg-acgcggcg 759
Query: 239 atcggcggccacggccgcgttgaactccctggnggccgcagcgagcgcgcggtcccgc 296
|||||||| | ||||||||||||||||||| | ||| ||||||| ||||||||||
Sbjct: 758 gtcggcggcgatcgccgcgttgaactccctggcgagcgcggcgagcgagcggtcccgc 701
>gb|AU070794.1|AU070794 AU070794 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10255_1A, mRNA sequence
Length = 261
Score = 248 bits (125), Expect = 4e-063
Identities = 196/223 (87%)
Strand = Plus / Minus
Query: 333 ccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagc 392
||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||
Sbjct: 261 ccgccccacagcgtgttgtcgtaggngatgaggcngccgaccctgaccagctgcagcagc 202
Query: 393 cgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttg 452
|||| ||||||| |||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 201 cgctngtggtagccgaggaagttcaccttgtccgngtccacgaacgcgaagtcgaacntc 142
Query: 453 cccttgttcccctcctcggaaaccatctggtccagcacgggcagcgcgagcccgacgcgg 512
|| |||||||||||||||| || | || ||| || || || | ||||| |||||||||
Sbjct: 141 ccnttgttcccctcctcggcgacgagctcgtcgagnaccggnatggcgaggccgacgcgg 82
Query: 513 aagtcgatcttgtgcgccacgccggccttctcgatcaccggcg 555
||||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 81 aagtcgacnttgtgcgcnacgccggccttgtcgatcaccggcg 39
>gb|AACV01020268.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020268, whole
genome shotgun sequence
Length = 5761
Score = 228 bits (115), Expect = 4e-057
Identities = 142/151 (94%)
Strand = Plus / Minus
Query: 318 ggcgcggccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctg 377
||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3868 ggcgccgccaccgagccgccccacagcgtgttgtcgtaggcgatgaggccgccgaccctg 3809
Query: 378 agcagctgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaac 437
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3808 accagctgcagcagccgctcgtggtagccgaggaagttcaccttgtccgcgtccacgaac 3749
Query: 438 gcgaagtcgaacttgcccttgttcccctcct 468
|||||||||||| | ||||||||||||||||
Sbjct: 3748 gcgaagtcgaacctccccttgttcccctcct 3718
Score = 115 bits (58), Expect = 4e-023
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 498 gcgagcccgacgcggaagtcgatcttgtgcgccacgccggccttctcgatcaccggcgac 557
||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 3608 gcgaggccgacgcggaagtcgaccttgtgcgccacgccggccttgtcgatcaccggcgct 3549
Query: 558 ccaatctggtcgtagctctcgcgggtaacgtcgatggccacaatct 603
|| | || |||||||||||| ||| | |||||||||||||| ||||
Sbjct: 3548 ccgacctcgtcgtagctctcccggctcacgtcgatggccacgatct 3503
Score = 111 bits (56), Expect = 6e-022
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 602 cttgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgc 661
|||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct: 3424 cttgccgtcgtcagggagcgcgagggcggtgg-cgagcagcgagtacccggtgaacacgc 3366
Query: 662 caacctcgatggcgttcttggcgc 685
| ||||||||||||||||||||||
Sbjct: 3365 cgacctcgatggcgttcttggcgc 3342
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 180 acgcggcggcacagcgngagcccgtcggcgatggcgacctggca-gacgtgaacgcgggg 238
||||||||||| ||| || |||||||||||||||| |||||| | | || |||||| |
Sbjct: 4018 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttg-acgcggcg 3960
Query: 239 atcggcggccacggccgcgttgaactccctggnggccgcagcgagcgcgcggtcccgc 296
|||||||| | ||||||||||||||||||| | ||| ||||||| ||||||||||
Sbjct: 3959 gtcggcggcgatcgccgcgttgaactccctggcgagcgcggcgagcgagcggtcccgc 3902
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 228 bits (115), Expect = 4e-057
Identities = 142/151 (94%)
Strand = Plus / Plus
Query: 318 ggcgcggccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctg 377
||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4112477 ggcgccgccaccgagccgccccacagcgtgttgtcgtaggcgatgaggccgccgaccctg 4112536
Query: 378 agcagctgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaac 437
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4112537 accagctgcagcagccgctcgtggtagccgaggaagttcaccttgtccgcgtccacgaac 4112596
Query: 438 gcgaagtcgaacttgcccttgttcccctcct 468
|||||||||||| | ||||||||||||||||
Sbjct: 4112597 gcgaagtcgaacctccccttgttcccctcct 4112627
Score = 115 bits (58), Expect = 4e-023
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 498 gcgagcccgacgcggaagtcgatcttgtgcgccacgccggccttctcgatcaccggcgac 557
||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 4112737 gcgaggccgacgcggaagtcgaccttgtgcgccacgccggccttgtcgatcaccggcgct 4112796
Query: 558 ccaatctggtcgtagctctcgcgggtaacgtcgatggccacaatct 603
|| | || |||||||||||| ||| | |||||||||||||| ||||
Sbjct: 4112797 ccgacctcgtcgtagctctcccggctcacgtcgatggccacgatct 4112842
Score = 111 bits (56), Expect = 6e-022
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 602 cttgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgc 661
|||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct: 4112921 cttgccgtcgtcagggagcgcgagggcggtgg-cgagcagcgagtacccggtgaacacgc 4112979
Query: 662 caacctcgatggcgttcttggcgc 685
| ||||||||||||||||||||||
Sbjct: 4112980 cgacctcgatggcgttcttggcgc 4113003
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 180 acgcggcggcacagcgngagcccgtcggcgatggcgacctggca-gacgtgaacgcgggg 238
||||||||||| ||| || |||||||||||||||| |||||| | | || |||||| |
Sbjct: 4112327 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttg-acgcggcg 4112385
Query: 239 atcggcggccacggccgcgttgaactccctggnggccgcagcgagcgcgcggtcccgc 296
|||||||| | ||||||||||||||||||| | ||| ||||||| ||||||||||
Sbjct: 4112386 gtcggcggcgatcgccgcgttgaactccctggcgagcgcggcgagcgagcggtcccgc 4112443
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0463D04
Length = 145828
Score = 228 bits (115), Expect = 4e-057
Identities = 142/151 (94%)
Strand = Plus / Plus
Query: 318 ggcgcggccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctg 377
||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 82548 ggcgccgccaccgagccgccccacagcgtgttgtcgtaggcgatgaggccgccgaccctg 82607
Query: 378 agcagctgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaac 437
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 82608 accagctgcagcagccgctcgtggtagccgaggaagttcaccttgtccgcgtccacgaac 82667
Query: 438 gcgaagtcgaacttgcccttgttcccctcct 468
|||||||||||| | ||||||||||||||||
Sbjct: 82668 gcgaagtcgaacctccccttgttcccctcct 82698
Score = 115 bits (58), Expect = 4e-023
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 498 gcgagcccgacgcggaagtcgatcttgtgcgccacgccggccttctcgatcaccggcgac 557
||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 82808 gcgaggccgacgcggaagtcgaccttgtgcgccacgccggccttgtcgatcaccggcgct 82867
Query: 558 ccaatctggtcgtagctctcgcgggtaacgtcgatggccacaatct 603
|| | || |||||||||||| ||| | |||||||||||||| ||||
Sbjct: 82868 ccgacctcgtcgtagctctcccggctcacgtcgatggccacgatct 82913
Score = 111 bits (56), Expect = 6e-022
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 602 cttgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgc 661
|||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct: 82992 cttgccgtcgtcagggagcgcgagggcggtgg-cgagcagcgagtacccggtgaacacgc 83050
Query: 662 caacctcgatggcgttcttggcgc 685
| ||||||||||||||||||||||
Sbjct: 83051 cgacctcgatggcgttcttggcgc 83074
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 180 acgcggcggcacagcgngagcccgtcggcgatggcgacctggca-gacgtgaacgcgggg 238
||||||||||| ||| || |||||||||||||||| |||||| | | || |||||| |
Sbjct: 82398 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttg-acgcggcg 82456
Query: 239 atcggcggccacggccgcgttgaactccctggnggccgcagcgagcgcgcggtcccgc 296
|||||||| | ||||||||||||||||||| | ||| ||||||| ||||||||||
Sbjct: 82457 gtcggcggcgatcgccgcgttgaactccctggcgagcgcggcgagcgagcggtcccgc 82514
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0463G11
Length = 154188
Score = 228 bits (115), Expect = 4e-057
Identities = 142/151 (94%)
Strand = Plus / Plus
Query: 318 ggcgcggccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctg 377
||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 135410 ggcgccgccaccgagccgccccacagcgtgttgtcgtaggcgatgaggccgccgaccctg 135469
Query: 378 agcagctgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaac 437
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 135470 accagctgcagcagccgctcgtggtagccgaggaagttcaccttgtccgcgtccacgaac 135529
Query: 438 gcgaagtcgaacttgcccttgttcccctcct 468
|||||||||||| | ||||||||||||||||
Sbjct: 135530 gcgaagtcgaacctccccttgttcccctcct 135560
Score = 115 bits (58), Expect = 4e-023
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 498 gcgagcccgacgcggaagtcgatcttgtgcgccacgccggccttctcgatcaccggcgac 557
||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 135670 gcgaggccgacgcggaagtcgaccttgtgcgccacgccggccttgtcgatcaccggcgct 135729
Query: 558 ccaatctggtcgtagctctcgcgggtaacgtcgatggccacaatct 603
|| | || |||||||||||| ||| | |||||||||||||| ||||
Sbjct: 135730 ccgacctcgtcgtagctctcccggctcacgtcgatggccacgatct 135775
Score = 111 bits (56), Expect = 6e-022
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 602 cttgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgc 661
|||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct: 135854 cttgccgtcgtcagggagcgcgagggcggtgg-cgagcagcgagtacccggtgaacacgc 135912
Query: 662 caacctcgatggcgttcttggcgc 685
| ||||||||||||||||||||||
Sbjct: 135913 cgacctcgatggcgttcttggcgc 135936
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 180 acgcggcggcacagcgngagcccgtcggcgatggcgacctggca-gacgtgaacgcgggg 238
||||||||||| ||| || |||||||||||||||| |||||| | | || |||||| |
Sbjct: 135260 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttg-acgcggcg 135318
Query: 239 atcggcggccacggccgcgttgaactccctggnggccgcagcgagcgcgcggtcccgc 296
|||||||| | ||||||||||||||||||| | ||| ||||||| ||||||||||
Sbjct: 135319 gtcggcggcgatcgccgcgttgaactccctggcgagcgcggcgagcgagcggtcccgc 135376
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 228 bits (115), Expect = 4e-057
Identities = 142/151 (94%)
Strand = Plus / Plus
Query: 318 ggcgcggccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctg 377
||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7719614 ggcgccgccaccgagccgccccacagcgtgttgtcgtaggcgatgaggccgccgaccctg 7719673
Query: 378 agcagctgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaac 437
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7719674 accagctgcagcagccgctcgtggtagccgaggaagttcaccttgtccgcgtccacgaac 7719733
Query: 438 gcgaagtcgaacttgcccttgttcccctcct 468
|||||||||||| | ||||||||||||||||
Sbjct: 7719734 gcgaagtcgaacctccccttgttcccctcct 7719764
Score = 115 bits (58), Expect = 4e-023
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 498 gcgagcccgacgcggaagtcgatcttgtgcgccacgccggccttctcgatcaccggcgac 557
||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 7719874 gcgaggccgacgcggaagtcgaccttgtgcgccacgccggccttgtcgatcaccggcgct 7719933
Query: 558 ccaatctggtcgtagctctcgcgggtaacgtcgatggccacaatct 603
|| | || |||||||||||| ||| | |||||||||||||| ||||
Sbjct: 7719934 ccgacctcgtcgtagctctcccggctcacgtcgatggccacgatct 7719979
Score = 111 bits (56), Expect = 6e-022
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 602 cttgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgc 661
|||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct: 7720058 cttgccgtcgtcagggagcgcgagggcggtgg-cgagcagcgagtacccggtgaacacgc 7720116
Query: 662 caacctcgatggcgttcttggcgc 685
| ||||||||||||||||||||||
Sbjct: 7720117 cgacctcgatggcgttcttggcgc 7720140
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 180 acgcggcggcacagcgngagcccgtcggcgatggcgacctggca-gacgtgaacgcgggg 238
||||||||||| ||| || |||||||||||||||| |||||| | | || |||||| |
Sbjct: 7719464 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttg-acgcggcg 7719522
Query: 239 atcggcggccacggccgcgttgaactccctggnggccgcagcgagcgcgcggtcccgc 296
|||||||| | ||||||||||||||||||| | ||| ||||||| ||||||||||
Sbjct: 7719523 gtcggcggcgatcgccgcgttgaactccctggcgagcgcggcgagcgagcggtcccgc 7719580
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 228 bits (115), Expect = 4e-057
Identities = 142/151 (94%)
Strand = Plus / Plus
Query: 318 ggcgcggccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctg 377
||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 17193425 ggcgccgccaccgagccgccccacagcgtgttgtcgtaggcgatgaggccgccgaccctg 17193484
Query: 378 agcagctgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaac 437
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 17193485 accagctgcagcagccgctcgtggtagccgaggaagttcaccttgtccgcgtccacgaac 17193544
Query: 438 gcgaagtcgaacttgcccttgttcccctcct 468
|||||||||||| | ||||||||||||||||
Sbjct: 17193545 gcgaagtcgaacctccccttgttcccctcct 17193575
Score = 115 bits (58), Expect = 4e-023
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 498 gcgagcccgacgcggaagtcgatcttgtgcgccacgccggccttctcgatcaccggcgac 557
||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 17193685 gcgaggccgacgcggaagtcgaccttgtgcgccacgccggccttgtcgatcaccggcgct 17193744
Query: 558 ccaatctggtcgtagctctcgcgggtaacgtcgatggccacaatct 603
|| | || |||||||||||| ||| | |||||||||||||| ||||
Sbjct: 17193745 ccgacctcgtcgtagctctcccggctcacgtcgatggccacgatct 17193790
Score = 111 bits (56), Expect = 6e-022
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 602 cttgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgc 661
|||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct: 17193869 cttgccgtcgtcagggagcgcgagggcggtgg-cgagcagcgagtacccggtgaacacgc 17193927
Query: 662 caacctcgatggcgttcttggcgc 685
| ||||||||||||||||||||||
Sbjct: 17193928 cgacctcgatggcgttcttggcgc 17193951
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 180 acgcggcggcacagcgngagcccgtcggcgatggcgacctggca-gacgtgaacgcgggg 238
||||||||||| ||| || |||||||||||||||| |||||| | | || |||||| |
Sbjct: 17193275 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttg-acgcggcg 17193333
Query: 239 atcggcggccacggccgcgttgaactccctggnggccgcagcgagcgcgcggtcccgc 296
|||||||| | ||||||||||||||||||| | ||| ||||||| ||||||||||
Sbjct: 17193334 gtcggcggcgatcgccgcgttgaactccctggcgagcgcggcgagcgagcggtcccgc 17193391
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 228 bits (115), Expect = 4e-057
Identities = 142/151 (94%)
Strand = Plus / Plus
Query: 318 ggcgcggccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctg 377
||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 18420674 ggcgccgccaccgagccgccccacagcgtgttgtcgtaggcgatgaggccgccgaccctg 18420733
Query: 378 agcagctgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaac 437
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 18420734 accagctgcagcagccgctcgtggtagccgaggaagttcaccttgtccgcgtccacgaac 18420793
Query: 438 gcgaagtcgaacttgcccttgttcccctcct 468
|||||||||||| | ||||||||||||||||
Sbjct: 18420794 gcgaagtcgaacctccccttgttcccctcct 18420824
Score = 115 bits (58), Expect = 4e-023
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 498 gcgagcccgacgcggaagtcgatcttgtgcgccacgccggccttctcgatcaccggcgac 557
||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 18420934 gcgaggccgacgcggaagtcgaccttgtgcgccacgccggccttgtcgatcaccggcgct 18420993
Query: 558 ccaatctggtcgtagctctcgcgggtaacgtcgatggccacaatct 603
|| | || |||||||||||| ||| | |||||||||||||| ||||
Sbjct: 18420994 ccgacctcgtcgtagctctcccggctcacgtcgatggccacgatct 18421039
Score = 111 bits (56), Expect = 6e-022
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 602 cttgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgc 661
|||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct: 18421118 cttgccgtcgtcagggagcgcgagggcggtgg-cgagcagcgagtacccggtgaacacgc 18421176
Query: 662 caacctcgatggcgttcttggcgc 685
| ||||||||||||||||||||||
Sbjct: 18421177 cgacctcgatggcgttcttggcgc 18421200
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 180 acgcggcggcacagcgngagcccgtcggcgatggcgacctggca-gacgtgaacgcgggg 238
||||||||||| ||| || |||||||||||||||| |||||| | | || |||||| |
Sbjct: 18420524 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttg-acgcggcg 18420582
Query: 239 atcggcggccacggccgcgttgaactccctggnggccgcagcgagcgcgcggtcccgc 296
|||||||| | ||||||||||||||||||| | ||| ||||||| ||||||||||
Sbjct: 18420583 gtcggcggcgatcgccgcgttgaactccctggcgagcgcggcgagcgagcggtcccgc 18420640
>gb|AU182287.1|AU182287 AU182287 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1596, mRNA sequence
Length = 448
Score = 168 bits (85), Expect = 3e-039
Identities = 283/346 (81%), Gaps = 6/346 (1%)
Strand = Plus / Minus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
||||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||||||
Sbjct: 347 agcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtgg 288
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttgcccttgttc 461
||||||||| |||| ||||||| ||||| |||||| ||||||||||| || | |||
Sbjct: 287 tagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttg 228
Query: 462 ccctcctcggaaaccatctggtccagcacgggcagcgcgagcccgacgcggaagtcgatc 521
|||||||| |||| |||||||||||| ||||||||| | || | ||||||||||||
Sbjct: 227 ccctcctcctccaccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatc 168
Query: 522 ttgtgcgccacgccggccttctcgatc-accggcgacccaatctggtcgtagctctcgcg 580
||||||||||| || |||||||||||| || || | |||| | |||||| |||| ||
Sbjct: 167 ttgtgcgccactcccgccttctcgatcgacgggagcccca----gctcgtagttctcccg 112
Query: 581 ggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagca 640
| | | ||| || |||| ||| ||||||||||||||| ||||||||||||| |||| |
Sbjct: 111 gttgatgtccatcgccaagatcgtgccgtcgtcggggatggcgagggcggtg-gcgagga 53
Query: 641 gcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 52 gggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 7
>gb|CB653598.1|CB653598 OSJNEc04M15.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04M15 5', mRNA sequence
Length = 723
Score = 168 bits (85), Expect = 3e-039
Identities = 283/346 (81%), Gaps = 6/346 (1%)
Strand = Plus / Minus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
||||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||||||
Sbjct: 662 agcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtgg 603
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttgcccttgttc 461
||||||||| |||| ||||||| ||||| |||||| ||||||||||| || | |||
Sbjct: 602 tagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttg 543
Query: 462 ccctcctcggaaaccatctggtccagcacgggcagcgcgagcccgacgcggaagtcgatc 521
|||||||| |||| |||||||||||| ||||||||| | || | ||||||||||||
Sbjct: 542 ccctcctcctccaccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatc 483
Query: 522 ttgtgcgccacgccggccttctcgatc-accggcgacccaatctggtcgtagctctcgcg 580
||||||||||| || |||||||||||| || || | |||| | |||||| |||| ||
Sbjct: 482 ttgtgcgccactcccgccttctcgatcgacgggagcccca----gctcgtagttctcccg 427
Query: 581 ggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagca 640
| | | ||| || |||| ||| ||||||||||||||| ||||||||||||| |||| |
Sbjct: 426 gttgatgtccatcgccaagatcgtgccgtcgtcggggatggcgagggcggtg-gcgagga 368
Query: 641 gcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 367 gggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 322
>dbj|AK065744.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039L12, full
insert sequence
Length = 1052
Score = 168 bits (85), Expect = 3e-039
Identities = 283/346 (81%), Gaps = 6/346 (1%)
Strand = Plus / Minus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
||||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||||||
Sbjct: 684 agcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtgg 625
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttgcccttgttc 461
||||||||| |||| ||||||| ||||| |||||| ||||||||||| || | |||
Sbjct: 624 tagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttg 565
Query: 462 ccctcctcggaaaccatctggtccagcacgggcagcgcgagcccgacgcggaagtcgatc 521
|||||||| |||| |||||||||||| ||||||||| | || | ||||||||||||
Sbjct: 564 ccctcctcctccaccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatc 505
Query: 522 ttgtgcgccacgccggccttctcgatc-accggcgacccaatctggtcgtagctctcgcg 580
||||||||||| || |||||||||||| || || | |||| | |||||| |||| ||
Sbjct: 504 ttgtgcgccactcccgccttctcgatcgacgggagcccca----gctcgtagttctcccg 449
Query: 581 ggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagca 640
| | | ||| || |||| ||| ||||||||||||||| ||||||||||||| |||| |
Sbjct: 448 gttgatgtccatcgccaagatcgtgccgtcgtcggggatggcgagggcggtg-gcgagga 390
Query: 641 gcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 389 gggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 344
>gb|CB653599.1|CB653599 OSJNEc04M15.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04M15 3', mRNA sequence
Length = 692
Score = 157 bits (79), Expect = 1e-035
Identities = 240/292 (82%), Gaps = 5/292 (1%)
Strand = Plus / Plus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
||||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||||||
Sbjct: 395 agcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtgg 454
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttgcccttgttc 461
||||||||| |||| ||||||| ||||| |||||| ||||||||||| || | |||
Sbjct: 455 tagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttg 514
Query: 462 ccctcctcggaaaccatctggtccagcacgggcagcgcgagcccgacgcggaagtcgatc 521
|||||||| |||| |||||||||||| ||||||||| | || | ||||||||||||
Sbjct: 515 ccctcctcctccaccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatc 574
Query: 522 ttgtgcgccacgccggccttctcgatc-accggcgacccaatctggtcgtagctctcgcg 580
||||||||||| || |||||||||||| || || | |||| | |||||| |||| ||
Sbjct: 575 ttgtgcgccactcccgccttctcgatcgacgggagcccca----gctcgtagttctcccg 630
Query: 581 ggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtg 632
| | | ||| || |||| ||| ||||||||||||||| |||||||||||||
Sbjct: 631 gttgatgtccatcgccaagatcgtgccgtcgtcggggatggcgagggcggtg 682
>gb|AY644636.1| Oryza sativa (japonica cultivar-group) caffeoyl-CoA
O-methyltransferase (COA1) gene, complete cds
Length = 1272
Score = 157 bits (79), Expect = 1e-035
Identities = 175/207 (84%)
Strand = Plus / Minus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
||||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||||||
Sbjct: 1003 agcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtgg 944
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttgcccttgttc 461
||||||||| |||| ||||||| ||||| |||||| ||||||||||| || | |||
Sbjct: 943 tagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttg 884
Query: 462 ccctcctcggaaaccatctggtccagcacgggcagcgcgagcccgacgcggaagtcgatc 521
|||||||| |||| |||||||||||| ||||||||| | || | ||||||||||||
Sbjct: 883 ccctcctcctccaccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatc 824
Query: 522 ttgtgcgccacgccggccttctcgatc 548
||||||||||| || ||||||||||||
Sbjct: 823 ttgtgcgccactcccgccttctcgatc 797
Score = 61.9 bits (31), Expect = 5e-007
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 604 tgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgcca 663
||||||||||||||| ||||||||||||| |||| || ||||| |||||| |||||||
Sbjct: 651 tgccgtcgtcggggatggcgagggcggtg-gcgaggagggagtagccggtgtagacgccg 593
Query: 664 acctcgatggcgttcttggcgcc 686
| ||| |||| |||||||||||
Sbjct: 592 atctccatggtcttcttggcgcc 570
>gb|AACV01013091.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013091, whole
genome shotgun sequence
Length = 25948
Score = 157 bits (79), Expect = 1e-035
Identities = 175/207 (84%)
Strand = Plus / Plus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
||||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||||||
Sbjct: 11124 agcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtgg 11183
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttgcccttgttc 461
||||||||| |||| ||||||| ||||| |||||| ||||||||||| || | |||
Sbjct: 11184 tagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttg 11243
Query: 462 ccctcctcggaaaccatctggtccagcacgggcagcgcgagcccgacgcggaagtcgatc 521
|||||||| |||| |||||||||||| ||||||||| | || | ||||||||||||
Sbjct: 11244 ccctcctcctccaccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatc 11303
Query: 522 ttgtgcgccacgccggccttctcgatc 548
||||||||||| || ||||||||||||
Sbjct: 11304 ttgtgcgccactcccgccttctcgatc 11330
Score = 61.9 bits (31), Expect = 5e-007
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 604 tgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgcca 663
||||||||||||||| ||||||||||||| |||| || ||||| |||||| |||||||
Sbjct: 11476 tgccgtcgtcggggatggcgagggcggtg-gcgaggagggagtagccggtgtagacgccg 11534
Query: 664 acctcgatggcgttcttggcgcc 686
| ||| |||| |||||||||||
Sbjct: 11535 atctccatggtcttcttggcgcc 11557
>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
clone P0680A03
Length = 156054
Score = 157 bits (79), Expect = 1e-035
Identities = 175/207 (84%)
Strand = Plus / Minus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
||||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||||||
Sbjct: 5630 agcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtgg 5571
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttgcccttgttc 461
||||||||| |||| ||||||| ||||| |||||| ||||||||||| || | |||
Sbjct: 5570 tagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttg 5511
Query: 462 ccctcctcggaaaccatctggtccagcacgggcagcgcgagcccgacgcggaagtcgatc 521
|||||||| |||| |||||||||||| ||||||||| | || | ||||||||||||
Sbjct: 5510 ccctcctcctccaccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatc 5451
Query: 522 ttgtgcgccacgccggccttctcgatc 548
||||||||||| || ||||||||||||
Sbjct: 5450 ttgtgcgccactcccgccttctcgatc 5424
Score = 61.9 bits (31), Expect = 5e-007
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 604 tgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgcca 663
||||||||||||||| ||||||||||||| |||| || ||||| |||||| |||||||
Sbjct: 5278 tgccgtcgtcggggatggcgagggcggtg-gcgaggagggagtagccggtgtagacgccg 5220
Query: 664 acctcgatggcgttcttggcgcc 686
| ||| |||| |||||||||||
Sbjct: 5219 atctccatggtcttcttggcgcc 5197
>dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0015I14
Length = 150650
Score = 157 bits (79), Expect = 1e-035
Identities = 175/207 (84%)
Strand = Plus / Minus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
||||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||||||
Sbjct: 101439 agcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtgg 101380
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttgcccttgttc 461
||||||||| |||| ||||||| ||||| |||||| ||||||||||| || | |||
Sbjct: 101379 tagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttg 101320
Query: 462 ccctcctcggaaaccatctggtccagcacgggcagcgcgagcccgacgcggaagtcgatc 521
|||||||| |||| |||||||||||| ||||||||| | || | ||||||||||||
Sbjct: 101319 ccctcctcctccaccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatc 101260
Query: 522 ttgtgcgccacgccggccttctcgatc 548
||||||||||| || ||||||||||||
Sbjct: 101259 ttgtgcgccactcccgccttctcgatc 101233
Score = 61.9 bits (31), Expect = 5e-007
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 604 tgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgcca 663
||||||||||||||| ||||||||||||| |||| || ||||| |||||| |||||||
Sbjct: 101087 tgccgtcgtcggggatggcgagggcggtg-gcgaggagggagtagccggtgtagacgccg 101029
Query: 664 acctcgatggcgttcttggcgcc 686
| ||| |||| |||||||||||
Sbjct: 101028 atctccatggtcttcttggcgcc 101006
>ref|NT_079872.2| Oryza sativa (japonica cultivar-group)
Length = 1124013
Score = 157 bits (79), Expect = 1e-035
Identities = 175/207 (84%)
Strand = Plus / Minus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
||||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||||||
Sbjct: 402107 agcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtgg 402048
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttgcccttgttc 461
||||||||| |||| ||||||| ||||| |||||| ||||||||||| || | |||
Sbjct: 402047 tagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttg 401988
Query: 462 ccctcctcggaaaccatctggtccagcacgggcagcgcgagcccgacgcggaagtcgatc 521
|||||||| |||| |||||||||||| ||||||||| | || | ||||||||||||
Sbjct: 401987 ccctcctcctccaccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatc 401928
Query: 522 ttgtgcgccacgccggccttctcgatc 548
||||||||||| || ||||||||||||
Sbjct: 401927 ttgtgcgccactcccgccttctcgatc 401901
Score = 61.9 bits (31), Expect = 5e-007
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 604 tgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgcca 663
||||||||||||||| ||||||||||||| |||| || ||||| |||||| |||||||
Sbjct: 401755 tgccgtcgtcggggatggcgagggcggtg-gcgaggagggagtagccggtgtagacgccg 401697
Query: 664 acctcgatggcgttcttggcgcc 686
| ||| |||| |||||||||||
Sbjct: 401696 atctccatggtcttcttggcgcc 401674
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 157 bits (79), Expect = 1e-035
Identities = 175/207 (84%)
Strand = Plus / Minus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
||||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||||||
Sbjct: 3207453 agcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtgg 3207394
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttgcccttgttc 461
||||||||| |||| ||||||| ||||| |||||| ||||||||||| || | |||
Sbjct: 3207393 tagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttg 3207334
Query: 462 ccctcctcggaaaccatctggtccagcacgggcagcgcgagcccgacgcggaagtcgatc 521
|||||||| |||| |||||||||||| ||||||||| | || | ||||||||||||
Sbjct: 3207333 ccctcctcctccaccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatc 3207274
Query: 522 ttgtgcgccacgccggccttctcgatc 548
||||||||||| || ||||||||||||
Sbjct: 3207273 ttgtgcgccactcccgccttctcgatc 3207247
Score = 61.9 bits (31), Expect = 5e-007
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 604 tgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgcca 663
||||||||||||||| ||||||||||||| |||| || ||||| |||||| |||||||
Sbjct: 3207101 tgccgtcgtcggggatggcgagggcggtg-gcgaggagggagtagccggtgtagacgccg 3207043
Query: 664 acctcgatggcgttcttggcgcc 686
| ||| |||| |||||||||||
Sbjct: 3207042 atctccatggtcttcttggcgcc 3207020
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 157 bits (79), Expect = 1e-035
Identities = 175/207 (84%)
Strand = Plus / Minus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
||||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||||||
Sbjct: 3207453 agcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtgg 3207394
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttgcccttgttc 461
||||||||| |||| ||||||| ||||| |||||| ||||||||||| || | |||
Sbjct: 3207393 tagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttg 3207334
Query: 462 ccctcctcggaaaccatctggtccagcacgggcagcgcgagcccgacgcggaagtcgatc 521
|||||||| |||| |||||||||||| ||||||||| | || | ||||||||||||
Sbjct: 3207333 ccctcctcctccaccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatc 3207274
Query: 522 ttgtgcgccacgccggccttctcgatc 548
||||||||||| || ||||||||||||
Sbjct: 3207273 ttgtgcgccactcccgccttctcgatc 3207247
Score = 61.9 bits (31), Expect = 5e-007
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 604 tgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgcca 663
||||||||||||||| ||||||||||||| |||| || ||||| |||||| |||||||
Sbjct: 3207101 tgccgtcgtcggggatggcgagggcggtg-gcgaggagggagtagccggtgtagacgccg 3207043
Query: 664 acctcgatggcgttcttggcgcc 686
| ||| |||| |||||||||||
Sbjct: 3207042 atctccatggtcttcttggcgcc 3207020
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 157 bits (79), Expect = 1e-035
Identities = 175/207 (84%)
Strand = Plus / Minus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
||||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||||||
Sbjct: 3314076 agcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtgg 3314017
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttgcccttgttc 461
||||||||| |||| ||||||| ||||| |||||| ||||||||||| || | |||
Sbjct: 3314016 tagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttg 3313957
Query: 462 ccctcctcggaaaccatctggtccagcacgggcagcgcgagcccgacgcggaagtcgatc 521
|||||||| |||| |||||||||||| ||||||||| | || | ||||||||||||
Sbjct: 3313956 ccctcctcctccaccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatc 3313897
Query: 522 ttgtgcgccacgccggccttctcgatc 548
||||||||||| || ||||||||||||
Sbjct: 3313896 ttgtgcgccactcccgccttctcgatc 3313870
Score = 61.9 bits (31), Expect = 5e-007
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 604 tgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgcca 663
||||||||||||||| ||||||||||||| |||| || ||||| |||||| |||||||
Sbjct: 3313724 tgccgtcgtcggggatggcgagggcggtg-gcgaggagggagtagccggtgtagacgccg 3313666
Query: 664 acctcgatggcgttcttggcgcc 686
| ||| |||| |||||||||||
Sbjct: 3313665 atctccatggtcttcttggcgcc 3313643
>dbj|AK106735.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-A04, full
insert sequence
Length = 1895
Score = 131 bits (66), Expect = 7e-028
Identities = 153/179 (85%), Gaps = 6/179 (3%)
Strand = Plus / Minus
Query: 509 gcggaagtcgatcttgtgcgccacgccggccttctcgatcaccgg-cgacccaatctggt 567
||||||||||| ||||||||| |||||||| | |||||||||||| || |||| | |
Sbjct: 1347 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggcgcccca----gct 1292
Query: 568 cgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgaggg 627
||||| ||| ||| | |||||||||||||| | ||||||||||||||||||||| || |
Sbjct: 1291 cgtagtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcg 1232
Query: 628 cggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
||||| ||||||||||||| |||||||||||||| ||||||| ||||||| |||||||
Sbjct: 1231 cggtgg-cgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgcc 1174
Score = 97.6 bits (49), Expect = 9e-018
Identities = 112/133 (84%)
Strand = Plus / Minus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
|||||||||||||||||||||||||||||||| |||| | ||| ||||| | ||||||
Sbjct: 1526 gccacggacccgccccacagcgtgttgtcgtacgcgaccacgccgccgacgcgcagcagc 1467
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||| ||||||||||||||| | || | | | |||||||||||||| || ||||||||
Sbjct: 1466 cgcaccagccgctcgtggtacccgcggtactgctccttgtccgcgtccgcgtacgcgaag 1407
Query: 444 tcgaacttgccct 456
|||||||| ||||
Sbjct: 1406 tcgaacttcccct 1394
>gb|AY644638.1| Oryza sativa (japonica cultivar-group) caffeoyl-CoA
O-methyltransferase (COA26) gene, complete cds
Length = 1116
Score = 131 bits (66), Expect = 7e-028
Identities = 153/179 (85%), Gaps = 6/179 (3%)
Strand = Plus / Minus
Query: 509 gcggaagtcgatcttgtgcgccacgccggccttctcgatcaccgg-cgacccaatctggt 567
||||||||||| ||||||||| |||||||| | |||||||||||| || |||| | |
Sbjct: 683 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggcgcccca----gct 628
Query: 568 cgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgaggg 627
||||| ||| ||| | |||||||||||||| | ||||||||||||||||||||| || |
Sbjct: 627 cgtagtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcg 568
Query: 628 cggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
||||| ||||||||||||| |||||||||||||| ||||||| ||||||| |||||||
Sbjct: 567 cggtgg-cgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgcc 510
Score = 97.6 bits (49), Expect = 9e-018
Identities = 112/133 (84%)
Strand = Plus / Minus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
|||||||||||||||||||||||||||||||| |||| | ||| ||||| | ||||||
Sbjct: 862 gccacggacccgccccacagcgtgttgtcgtacgcgaccacgccgccgacgcgcagcagc 803
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||| ||||||||||||||| | || | | | |||||||||||||| || ||||||||
Sbjct: 802 cgcaccagccgctcgtggtacccgcggtactgctccttgtccgcgtccgcgtacgcgaag 743
Query: 444 tcgaacttgccct 456
|||||||| ||||
Sbjct: 742 tcgaacttcccct 730
>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0026F07
Length = 137354
Score = 131 bits (66), Expect = 7e-028
Identities = 153/179 (85%), Gaps = 6/179 (3%)
Strand = Plus / Plus
Query: 509 gcggaagtcgatcttgtgcgccacgccggccttctcgatcaccgg-cgacccaatctggt 567
||||||||||| ||||||||| |||||||| | |||||||||||| || |||| | |
Sbjct: 99257 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggcgcccca----gct 99312
Query: 568 cgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgaggg 627
||||| ||| ||| | |||||||||||||| | ||||||||||||||||||||| || |
Sbjct: 99313 cgtagtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcg 99372
Query: 628 cggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
||||| ||||||||||||| |||||||||||||| ||||||| ||||||| |||||||
Sbjct: 99373 cggtgg-cgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgcc 99430
Score = 113 bits (57), Expect = 2e-022
Identities = 123/145 (84%)
Strand = Plus / Plus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
||||||||||||||||| ||||||||||||||||| | | ||| ||| | | | ||||
Sbjct: 94676 gccacggacccgccccagagcgtgttgtcgtaggccagcacgccgccggcgcgcaccagc 94735
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||||||||||||||||||| | | | ||||| ||||||| ||||||||||||||||||
Sbjct: 94736 cgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaacgcgaag 94795
Query: 444 tcgaacttgcccttgttcccctcct 468
|||||||| |||| |||| ||||||
Sbjct: 94796 tcgaacttcccctcgttctcctcct 94820
Score = 97.6 bits (49), Expect = 9e-018
Identities = 112/133 (84%)
Strand = Plus / Plus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
|||||||||||||||||||||||||||||||| |||| | ||| ||||| | ||||||
Sbjct: 99078 gccacggacccgccccacagcgtgttgtcgtacgcgaccacgccgccgacgcgcagcagc 99137
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||| ||||||||||||||| | || | | | |||||||||||||| || ||||||||
Sbjct: 99138 cgcaccagccgctcgtggtacccgcggtactgctccttgtccgcgtccgcgtacgcgaag 99197
Query: 444 tcgaacttgccct 456
|||||||| ||||
Sbjct: 99198 tcgaacttcccct 99210
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 88055 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 88114
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 88115 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 88167
Score = 75.8 bits (38), Expect = 3e-011
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 585 acgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagcagcga 644
||||||||||| || | |||||||||||| |||| |||||| |||||| |||||| ||
Sbjct: 95018 acgtcgatggcgacgaccttgccgtcgtccgggatggcgagcgcggtgg-cgagcacgga 95076
Query: 645 gtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| | |||||||| ||||| |||||||||| ||||||||||||
Sbjct: 95077 gcagccggtgaacacgcccacctcgatggtgttcttggcgcc 95118
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 88235 cgcggaagtccaccttgtgcgccaccccggccttctc 88271
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttct 543
|||||||||||| |||||| || |||||||||||||
Sbjct: 94944 cgcggaagtcgaccttgtgggcgacgccggccttct 94979
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 87919 ccgtcggcgatggcgagctggcagacgt 87946
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 637 agcagcgagtacccggtgaagacgccaacctcgat 671
||||||||||| ||||||||||| || ||||||||
Sbjct: 88360 agcagcgagtagccggtgaagacacccacctcgat 88394
>gb|AACV01018795.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018795, whole
genome shotgun sequence
Length = 16642
Score = 131 bits (66), Expect = 7e-028
Identities = 153/179 (85%), Gaps = 6/179 (3%)
Strand = Plus / Plus
Query: 509 gcggaagtcgatcttgtgcgccacgccggccttctcgatcaccgg-cgacccaatctggt 567
||||||||||| ||||||||| |||||||| | |||||||||||| || |||| | |
Sbjct: 13611 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggcgcccca----gct 13666
Query: 568 cgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgaggg 627
||||| ||| ||| | |||||||||||||| | ||||||||||||||||||||| || |
Sbjct: 13667 cgtagtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcg 13726
Query: 628 cggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
||||| ||||||||||||| |||||||||||||| ||||||| ||||||| |||||||
Sbjct: 13727 cggtgg-cgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgcc 13784
Score = 113 bits (57), Expect = 2e-022
Identities = 123/145 (84%)
Strand = Plus / Plus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
||||||||||||||||| ||||||||||||||||| | | ||| ||| | | | ||||
Sbjct: 9029 gccacggacccgccccagagcgtgttgtcgtaggccagcacgccgccggcgcgcaccagc 9088
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||||||||||||||||||| | | | ||||| ||||||| ||||||||||||||||||
Sbjct: 9089 cgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaacgcgaag 9148
Query: 444 tcgaacttgcccttgttcccctcct 468
|||||||| |||| |||| ||||||
Sbjct: 9149 tcgaacttcccctcgttctcctcct 9173
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 2404 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 2463
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 2464 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 2516
Score = 87.7 bits (44), Expect = 9e-015
Identities = 114/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 324 gccacggacccg-ccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcag 382
|||||||||||| |||||||||||||||||||| |||| | ||| ||||| | |||||
Sbjct: 13431 gccacggacccggccccacagcgtgttgtcgtacgcgaccaagccgccgacgcgcagcag 13490
Query: 383 ctgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaa 442
| ||| ||||||||||||||| | || | | | |||||||||||||| || |||||||
Sbjct: 13491 ccgcaccagccgctcgtggtacccgcggtactgctccttgtccgcgtccgcgtacgcgaa 13550
Query: 443 gtcgaacttgcccttg 458
||||||||| ||||||
Sbjct: 13551 gtcgaacttccccttg 13566
Score = 75.8 bits (38), Expect = 3e-011
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 585 acgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagcagcga 644
||||||||||| || | |||||||||||| |||| |||||| |||||| |||||| ||
Sbjct: 9371 acgtcgatggcgacgaccttgccgtcgtccgggatggcgagcgcggtgg-cgagcacgga 9429
Query: 645 gtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| | |||||||| ||||| |||||||||| ||||||||||||
Sbjct: 9430 gcagccggtgaacacgcccacctcgatggtgttcttggcgcc 9471
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 2584 cgcggaagtccaccttgtgcgccaccccggccttctc 2620
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttct 543
|||||||||||| |||||| || |||||||||||||
Sbjct: 9297 cgcggaagtcgaccttgtgggcgacgccggccttct 9332
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 2268 ccgtcggcgatggcgagctggcagacgt 2295
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 131 bits (66), Expect = 7e-028
Identities = 153/179 (85%), Gaps = 6/179 (3%)
Strand = Plus / Plus
Query: 509 gcggaagtcgatcttgtgcgccacgccggccttctcgatcaccgg-cgacccaatctggt 567
||||||||||| ||||||||| |||||||| | |||||||||||| || |||| | |
Sbjct: 24352910 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggcgcccca----gct 24352965
Query: 568 cgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgaggg 627
||||| ||| ||| | |||||||||||||| | ||||||||||||||||||||| || |
Sbjct: 24352966 cgtagtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcg 24353025
Query: 628 cggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
||||| ||||||||||||| |||||||||||||| ||||||| ||||||| |||||||
Sbjct: 24353026 cggtgg-cgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgcc 24353083
Score = 113 bits (57), Expect = 2e-022
Identities = 123/145 (84%)
Strand = Plus / Plus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
||||||||||||||||| ||||||||||||||||| | | ||| ||| | | | ||||
Sbjct: 24348329 gccacggacccgccccagagcgtgttgtcgtaggccagcacgccgccggcgcgcaccagc 24348388
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||||||||||||||||||| | | | ||||| ||||||| ||||||||||||||||||
Sbjct: 24348389 cgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaacgcgaag 24348448
Query: 444 tcgaacttgcccttgttcccctcct 468
|||||||| |||| |||| ||||||
Sbjct: 24348449 tcgaacttcccctcgttctcctcct 24348473
Score = 97.6 bits (49), Expect = 9e-018
Identities = 112/133 (84%)
Strand = Plus / Plus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
|||||||||||||||||||||||||||||||| |||| | ||| ||||| | ||||||
Sbjct: 24352731 gccacggacccgccccacagcgtgttgtcgtacgcgaccacgccgccgacgcgcagcagc 24352790
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||| ||||||||||||||| | || | | | |||||||||||||| || ||||||||
Sbjct: 24352791 cgcaccagccgctcgtggtacccgcggtactgctccttgtccgcgtccgcgtacgcgaag 24352850
Query: 444 tcgaacttgccct 456
|||||||| ||||
Sbjct: 24352851 tcgaacttcccct 24352863
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 24341708 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 24341767
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 24341768 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 24341820
Score = 75.8 bits (38), Expect = 3e-011
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 585 acgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagcagcga 644
||||||||||| || | |||||||||||| |||| |||||| |||||| |||||| ||
Sbjct: 24348671 acgtcgatggcgacgaccttgccgtcgtccgggatggcgagcgcggtgg-cgagcacgga 24348729
Query: 645 gtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| | |||||||| ||||| |||||||||| ||||||||||||
Sbjct: 24348730 gcagccggtgaacacgcccacctcgatggtgttcttggcgcc 24348771
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 24341888 cgcggaagtccaccttgtgcgccaccccggccttctc 24341924
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttct 543
|||||||||||| |||||| || |||||||||||||
Sbjct: 24348597 cgcggaagtcgaccttgtgggcgacgccggccttct 24348632
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 24341572 ccgtcggcgatggcgagctggcagacgt 24341599
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 637 agcagcgagtacccggtgaagacgccaacctcgat 671
||||||||||| ||||||||||| || ||||||||
Sbjct: 24342013 agcagcgagtagccggtgaagacacccacctcgat 24342047
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 131 bits (66), Expect = 7e-028
Identities = 153/179 (85%), Gaps = 6/179 (3%)
Strand = Plus / Plus
Query: 509 gcggaagtcgatcttgtgcgccacgccggccttctcgatcaccgg-cgacccaatctggt 567
||||||||||| ||||||||| |||||||| | |||||||||||| || |||| | |
Sbjct: 15837245 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggcgcccca----gct 15837300
Query: 568 cgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgaggg 627
||||| ||| ||| | |||||||||||||| | ||||||||||||||||||||| || |
Sbjct: 15837301 cgtagtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcg 15837360
Query: 628 cggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
||||| ||||||||||||| |||||||||||||| ||||||| ||||||| |||||||
Sbjct: 15837361 cggtgg-cgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgcc 15837418
Score = 113 bits (57), Expect = 2e-022
Identities = 123/145 (84%)
Strand = Plus / Plus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
||||||||||||||||| ||||||||||||||||| | | ||| ||| | | | ||||
Sbjct: 15832663 gccacggacccgccccagagcgtgttgtcgtaggccagcacgccgccggcgcgcaccagc 15832722
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||||||||||||||||||| | | | ||||| ||||||| ||||||||||||||||||
Sbjct: 15832723 cgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaacgcgaag 15832782
Query: 444 tcgaacttgcccttgttcccctcct 468
|||||||| |||| |||| ||||||
Sbjct: 15832783 tcgaacttcccctcgttctcctcct 15832807
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 15826038 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 15826097
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 15826098 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 15826150
Score = 87.7 bits (44), Expect = 9e-015
Identities = 114/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 324 gccacggacccg-ccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcag 382
|||||||||||| |||||||||||||||||||| |||| | ||| ||||| | |||||
Sbjct: 15837065 gccacggacccggccccacagcgtgttgtcgtacgcgaccaagccgccgacgcgcagcag 15837124
Query: 383 ctgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaa 442
| ||| ||||||||||||||| | || | | | |||||||||||||| || |||||||
Sbjct: 15837125 ccgcaccagccgctcgtggtacccgcggtactgctccttgtccgcgtccgcgtacgcgaa 15837184
Query: 443 gtcgaacttgcccttg 458
||||||||| ||||||
Sbjct: 15837185 gtcgaacttccccttg 15837200
Score = 75.8 bits (38), Expect = 3e-011
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 585 acgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagcagcga 644
||||||||||| || | |||||||||||| |||| |||||| |||||| |||||| ||
Sbjct: 15833005 acgtcgatggcgacgaccttgccgtcgtccgggatggcgagcgcggtgg-cgagcacgga 15833063
Query: 645 gtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| | |||||||| ||||| |||||||||| ||||||||||||
Sbjct: 15833064 gcagccggtgaacacgcccacctcgatggtgttcttggcgcc 15833105
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 15826218 cgcggaagtccaccttgtgcgccaccccggccttctc 15826254
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttct 543
|||||||||||| |||||| || |||||||||||||
Sbjct: 15832931 cgcggaagtcgaccttgtgggcgacgccggccttct 15832966
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 15825902 ccgtcggcgatggcgagctggcagacgt 15825929
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 131 bits (66), Expect = 7e-028
Identities = 153/179 (85%), Gaps = 6/179 (3%)
Strand = Plus / Plus
Query: 509 gcggaagtcgatcttgtgcgccacgccggccttctcgatcaccgg-cgacccaatctggt 567
||||||||||| ||||||||| |||||||| | |||||||||||| || |||| | |
Sbjct: 23439251 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggcgcccca----gct 23439306
Query: 568 cgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgaggg 627
||||| ||| ||| | |||||||||||||| | ||||||||||||||||||||| || |
Sbjct: 23439307 cgtagtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcg 23439366
Query: 628 cggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
||||| ||||||||||||| |||||||||||||| ||||||| ||||||| |||||||
Sbjct: 23439367 cggtgg-cgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgcc 23439424
Score = 113 bits (57), Expect = 2e-022
Identities = 123/145 (84%)
Strand = Plus / Plus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
||||||||||||||||| ||||||||||||||||| | | ||| ||| | | | ||||
Sbjct: 23434669 gccacggacccgccccagagcgtgttgtcgtaggccagcacgccgccggcgcgcaccagc 23434728
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||||||||||||||||||| | | | ||||| ||||||| ||||||||||||||||||
Sbjct: 23434729 cgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaacgcgaag 23434788
Query: 444 tcgaacttgcccttgttcccctcct 468
|||||||| |||| |||| ||||||
Sbjct: 23434789 tcgaacttcccctcgttctcctcct 23434813
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 23428044 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 23428103
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 23428104 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 23428156
Score = 87.7 bits (44), Expect = 9e-015
Identities = 114/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 324 gccacggacccg-ccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcag 382
|||||||||||| |||||||||||||||||||| |||| | ||| ||||| | |||||
Sbjct: 23439071 gccacggacccggccccacagcgtgttgtcgtacgcgaccaagccgccgacgcgcagcag 23439130
Query: 383 ctgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaa 442
| ||| ||||||||||||||| | || | | | |||||||||||||| || |||||||
Sbjct: 23439131 ccgcaccagccgctcgtggtacccgcggtactgctccttgtccgcgtccgcgtacgcgaa 23439190
Query: 443 gtcgaacttgcccttg 458
||||||||| ||||||
Sbjct: 23439191 gtcgaacttccccttg 23439206
Score = 75.8 bits (38), Expect = 3e-011
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 585 acgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagcagcga 644
||||||||||| || | |||||||||||| |||| |||||| |||||| |||||| ||
Sbjct: 23435011 acgtcgatggcgacgaccttgccgtcgtccgggatggcgagcgcggtgg-cgagcacgga 23435069
Query: 645 gtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| | |||||||| ||||| |||||||||| ||||||||||||
Sbjct: 23435070 gcagccggtgaacacgcccacctcgatggtgttcttggcgcc 23435111
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 23428224 cgcggaagtccaccttgtgcgccaccccggccttctc 23428260
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttct 543
|||||||||||| |||||| || |||||||||||||
Sbjct: 23434937 cgcggaagtcgaccttgtgggcgacgccggccttct 23434972
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 23427908 ccgtcggcgatggcgagctggcagacgt 23427935
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 131 bits (66), Expect = 7e-028
Identities = 153/179 (85%), Gaps = 6/179 (3%)
Strand = Plus / Plus
Query: 509 gcggaagtcgatcttgtgcgccacgccggccttctcgatcaccgg-cgacccaatctggt 567
||||||||||| ||||||||| |||||||| | |||||||||||| || |||| | |
Sbjct: 24590997 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggcgcccca----gct 24591052
Query: 568 cgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgaggg 627
||||| ||| ||| | |||||||||||||| | ||||||||||||||||||||| || |
Sbjct: 24591053 cgtagtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcg 24591112
Query: 628 cggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
||||| ||||||||||||| |||||||||||||| ||||||| ||||||| |||||||
Sbjct: 24591113 cggtgg-cgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgcc 24591170
Score = 113 bits (57), Expect = 2e-022
Identities = 123/145 (84%)
Strand = Plus / Plus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
||||||||||||||||| ||||||||||||||||| | | ||| ||| | | | ||||
Sbjct: 24586416 gccacggacccgccccagagcgtgttgtcgtaggccagcacgccgccggcgcgcaccagc 24586475
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||||||||||||||||||| | | | ||||| ||||||| ||||||||||||||||||
Sbjct: 24586476 cgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaacgcgaag 24586535
Query: 444 tcgaacttgcccttgttcccctcct 468
|||||||| |||| |||| ||||||
Sbjct: 24586536 tcgaacttcccctcgttctcctcct 24586560
Score = 97.6 bits (49), Expect = 9e-018
Identities = 112/133 (84%)
Strand = Plus / Plus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
|||||||||||||||||||||||||||||||| |||| | ||| ||||| | ||||||
Sbjct: 24590818 gccacggacccgccccacagcgtgttgtcgtacgcgaccacgccgccgacgcgcagcagc 24590877
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||| ||||||||||||||| | || | | | |||||||||||||| || ||||||||
Sbjct: 24590878 cgcaccagccgctcgtggtacccgcggtactgctccttgtccgcgtccgcgtacgcgaag 24590937
Query: 444 tcgaacttgccct 456
|||||||| ||||
Sbjct: 24590938 tcgaacttcccct 24590950
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 24579795 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 24579854
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 24579855 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 24579907
Score = 75.8 bits (38), Expect = 3e-011
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 585 acgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagcagcga 644
||||||||||| || | |||||||||||| |||| |||||| |||||| |||||| ||
Sbjct: 24586758 acgtcgatggcgacgaccttgccgtcgtccgggatggcgagcgcggtgg-cgagcacgga 24586816
Query: 645 gtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| | |||||||| ||||| |||||||||| ||||||||||||
Sbjct: 24586817 gcagccggtgaacacgcccacctcgatggtgttcttggcgcc 24586858
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 24579975 cgcggaagtccaccttgtgcgccaccccggccttctc 24580011
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttct 543
|||||||||||| |||||| || |||||||||||||
Sbjct: 24586684 cgcggaagtcgaccttgtgggcgacgccggccttct 24586719
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 24579659 ccgtcggcgatggcgagctggcagacgt 24579686
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 637 agcagcgagtacccggtgaagacgccaacctcgat 671
||||||||||| ||||||||||| || ||||||||
Sbjct: 24580100 agcagcgagtagccggtgaagacacccacctcgat 24580134
>gb|CF293402.1|CF293402 30DGS--02-J06.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--02-J06, mRNA sequence
Length = 546
Score = 117 bits (59), Expect = 1e-023
Identities = 134/159 (84%)
Strand = Plus / Plus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
||||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||||||
Sbjct: 382 agcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtgg 441
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacttgcccttgttc 461
||||||||| |||| ||||||| ||||| |||||| ||||||||||| || | |||
Sbjct: 442 tagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttg 501
Query: 462 ccctcctcggaaaccatctggtccagcacgggcagcgcg 500
|||||||| |||| |||||||||||| |||||||||
Sbjct: 502 ccctcctcctccaccagctggtccagcaccggcagcgcg 540
>gb|CF308395.1|CF308395 ABF--02-D07.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-D07, mRNA sequence
Length = 541
Score = 109 bits (55), Expect = 2e-021
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
||||||||||||||||| ||||||||||||||||| | | ||| ||| | | | ||||
Sbjct: 391 gccacggacccgccccagagcgtgttgtcgtaggccagcacgccgccggcgcgcaccagc 450
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||||||||||||||||||| | | | ||||| ||||||| ||||||||||||||||||
Sbjct: 451 cgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaacgcgaag 510
Query: 444 tcgaacttgcccttgttcccctc 466
|||||||| |||| |||| ||||
Sbjct: 511 tcgaacttcccctcgttctcctc 533
>gb|CO435814.1|CO435814 OsMR880 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 845
Score = 109 bits (55), Expect = 2e-021
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
||||||||||||||||| ||||||||||||||||| | | ||| ||| | | | ||||
Sbjct: 335 gccacggacccgccccagagcgtgttgtcgtaggccagcacgccgccggcgcgcaccagc 276
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||||||||||||||||||| | | | ||||| ||||||| ||||||||||||||||||
Sbjct: 275 cgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaacgcgaag 216
Query: 444 tcgaacttgcccttgttcccctc 466
|||||||| |||| |||| ||||
Sbjct: 215 tcgaacttcccctcgttctcctc 193
>dbj|AK061757.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A06, full
insert sequence
Length = 1149
Score = 109 bits (55), Expect = 2e-021
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
||||||||||||||||| ||||||||||||||||| | | ||| ||| | | | ||||
Sbjct: 796 gccacggacccgccccagagcgtgttgtcgtaggccagcacgccgccggcgcgcaccagc 737
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||||||||||||||||||| | | | ||||| ||||||| ||||||||||||||||||
Sbjct: 736 cgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaacgcgaag 677
Query: 444 tcgaacttgcccttgttcccctc 466
|||||||| |||| |||| ||||
Sbjct: 676 tcgaacttcccctcgttctcctc 654
Score = 75.8 bits (38), Expect = 3e-011
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 585 acgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagcagcga 644
||||||||||| || | |||||||||||| |||| |||||| |||||| |||||| ||
Sbjct: 538 acgtcgatggcgacgaccttgccgtcgtccgggatggcgagcgcggtgg-cgagcacgga 480
Query: 645 gtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| | |||||||| ||||| |||||||||| ||||||||||||
Sbjct: 479 gcagccggtgaacacgcccacctcgatggtgttcttggcgcc 438
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttct 543
|||||||||||| |||||| || |||||||||||||
Sbjct: 612 cgcggaagtcgaccttgtgggcgacgccggccttct 577
>dbj|AK065515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030H15, full
insert sequence
Length = 1466
Score = 109 bits (55), Expect = 2e-021
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
||||||||||||||||| ||||||||||||||||| | | ||| ||| | | | ||||
Sbjct: 949 gccacggacccgccccagagcgtgttgtcgtaggccagcacgccgccggcgcgcaccagc 890
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||||||||||||||||||| | | | ||||| ||||||| ||||||||||||||||||
Sbjct: 889 cgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaacgcgaag 830
Query: 444 tcgaacttgcccttgttcccctc 466
|||||||| |||| |||| ||||
Sbjct: 829 tcgaacttcccctcgttctcctc 807
Score = 75.8 bits (38), Expect = 3e-011
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 585 acgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagcagcga 644
||||||||||| || | |||||||||||| |||| |||||| |||||| |||||| ||
Sbjct: 691 acgtcgatggcgacgaccttgccgtcgtccgggatggcgagcgcggtgg-cgagcacgga 633
Query: 645 gtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| | |||||||| ||||| |||||||||| ||||||||||||
Sbjct: 632 gcagccggtgaacacgcccacctcgatggtgttcttggcgcc 591
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttct 543
|||||||||||| |||||| || |||||||||||||
Sbjct: 765 cgcggaagtcgaccttgtgggcgacgccggccttct 730
>ref|XM_483169.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 879
Score = 109 bits (55), Expect = 2e-021
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
||||||||||||||||| ||||||||||||||||| | | ||| ||| | | | ||||
Sbjct: 728 gccacggacccgccccagagcgtgttgtcgtaggccagcacgccgccggcgcgcaccagc 669
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||||||||||||||||||| | | | ||||| ||||||| ||||||||||||||||||
Sbjct: 668 cgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaacgcgaag 609
Query: 444 tcgaacttgcccttgttcccctc 466
|||||||| |||| |||| ||||
Sbjct: 608 tcgaacttcccctcgttctcctc 586
Score = 75.8 bits (38), Expect = 3e-011
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 585 acgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagcagcga 644
||||||||||| || | |||||||||||| |||| |||||| |||||| |||||| ||
Sbjct: 470 acgtcgatggcgacgaccttgccgtcgtccgggatggcgagcgcggtgg-cgagcacgga 412
Query: 645 gtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| | |||||||| ||||| |||||||||| ||||||||||||
Sbjct: 411 gcagccggtgaacacgcccacctcgatggtgttcttggcgcc 370
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttct 543
|||||||||||| |||||| || |||||||||||||
Sbjct: 544 cgcggaagtcgaccttgtgggcgacgccggccttct 509
>ref|XM_483170.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 612
Score = 109 bits (55), Expect = 2e-021
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
||||||||||||||||| ||||||||||||||||| | | ||| ||| | | | ||||
Sbjct: 461 gccacggacccgccccagagcgtgttgtcgtaggccagcacgccgccggcgcgcaccagc 402
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||||||||||||||||||| | | | ||||| ||||||| ||||||||||||||||||
Sbjct: 401 cgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaacgcgaag 342
Query: 444 tcgaacttgcccttgttcccctc 466
|||||||| |||| |||| ||||
Sbjct: 341 tcgaacttcccctcgttctcctc 319
Score = 75.8 bits (38), Expect = 3e-011
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 585 acgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagcagcga 644
||||||||||| || | |||||||||||| |||| |||||| |||||| |||||| ||
Sbjct: 203 acgtcgatggcgacgaccttgccgtcgtccgggatggcgagcgcggtgg-cgagcacgga 145
Query: 645 gtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| | |||||||| ||||| |||||||||| ||||||||||||
Sbjct: 144 gcagccggtgaacacgcccacctcgatggtgttcttggcgcc 103
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttct 543
|||||||||||| |||||| || |||||||||||||
Sbjct: 277 cgcggaagtcgaccttgtgggcgacgccggccttct 242
>ref|XM_507282.1| PREDICTED Oryza sativa (japonica cultivar-group), P0026F07.26-2
mRNA
Length = 1149
Score = 109 bits (55), Expect = 2e-021
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 324 gccacggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagc 383
||||||||||||||||| ||||||||||||||||| | | ||| ||| | | | ||||
Sbjct: 796 gccacggacccgccccagagcgtgttgtcgtaggccagcacgccgccggcgcgcaccagc 737
Query: 384 tgcagcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaag 443
||||||||||||||||||| | | | ||||| ||||||| ||||||||||||||||||
Sbjct: 736 cgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaacgcgaag 677
Query: 444 tcgaacttgcccttgttcccctc 466
|||||||| |||| |||| ||||
Sbjct: 676 tcgaacttcccctcgttctcctc 654
Score = 75.8 bits (38), Expect = 3e-011
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 585 acgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagcagcga 644
||||||||||| || | |||||||||||| |||| |||||| |||||| |||||| ||
Sbjct: 538 acgtcgatggcgacgaccttgccgtcgtccgggatggcgagcgcggtgg-cgagcacgga 480
Query: 645 gtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
| | |||||||| ||||| |||||||||| ||||||||||||
Sbjct: 479 gcagccggtgaacacgcccacctcgatggtgttcttggcgcc 438
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttct 543
|||||||||||| |||||| || |||||||||||||
Sbjct: 612 cgcggaagtcgaccttgtgggcgacgccggccttct 577
>gb|AU101479.1|AU101479 AU101479 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50819, mRNA sequence
Length = 614
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 268 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 209
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 208 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 156
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 404 ccgtcggcgatggcgagctggcagacgt 377
Score = 44.1 bits (22), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | ||||||||||| |||||||||||
Sbjct: 88 cgcggaagtccaccttgtgcgccancccggccttctc 52
>gb|AU164542.1|AU164542 AU164542 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0434, mRNA sequence
Length = 671
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 301 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 242
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 241 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 189
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 437 ccgtcggcgatggcgagctggcagacgt 410
>gb|CA755835.1|CA755835 BR030029000_PLATE_D01_4_012.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030029000_PLATE_D01_4_012.ab1 similar to ESTs
AU030740(E60171),AU030739(E60171) correspond to a region
of the predicted gene.Similar to Populus tremuloides
caffeoyl-CoA 3-O-methyltransferase. (U27116) [Oryza
sativa (japonica cultivar-group)], mRNA sequence
Length = 877
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 741 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 682
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 681 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 629
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 561 cgcggaagtccaccttgtgcgccaccccggccttctc 525
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 637 agcagcgagtacccggtgaagacgccaacctcgat 671
||||||||||| ||||||||||| || ||||||||
Sbjct: 436 agcagcgagtagccggtgaagacacccacctcgat 402
>gb|CB650397.1|CB650397 OSJNEb14N03.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14N03 5', mRNA sequence
Length = 756
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 659 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 600
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 599 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 547
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 479 cgcggaagtccaccttgtgcgccaccccggccttctc 443
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 637 agcagcgagtacccggtgaagacgccaacctcgat 671
||||||||||| ||||||||||| || ||||||||
Sbjct: 354 agcagcgagtagccggtgaagacacccacctcgat 320
>gb|CB650869.1|CB650869 OSJNEb15J05.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15J05 5', mRNA sequence
Length = 866
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 659 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 600
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 599 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 547
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 479 cgcggaagtccaccttgtgcgccaccccggccttctc 443
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 795 ccgtcggcgatggcgagctggcagacgt 768
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 637 agcagcgagtacccggtgaagacgccaacctcgat 671
||||||||||| ||||||||||| || ||||||||
Sbjct: 354 agcagcgagtagccggtgaagacacccacctcgat 320
>gb|CB651300.1|CB651300 OSJNEb16D09.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16D09 5', mRNA sequence
Length = 641
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 310 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 251
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 250 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 198
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 130 cgcggaagtccaccttgtgcgccaccccggccttctc 94
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 446 ccgtcggcgatggcgagctggcagacgt 419
>gb|CB651301.1|CB651301 OSJNEb16D09.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16D09 3', mRNA sequence
Length = 774
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 332 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 391
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 392 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 444
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 512 cgcggaagtccaccttgtgcgccaccccggccttctc 548
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 196 ccgtcggcgatggcgagctggcagacgt 223
>gb|CB680447.1|CB680447 OSJNEf05C19.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf05C19 3', mRNA sequence
Length = 756
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 421 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 480
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 481 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 533
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 601 cgcggaagtccaccttgtgcgccaccccggccttctc 637
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 285 ccgtcggcgatggcgagctggcagacgt 312
>gb|CF589246.1|CF589246 EST00H03 Subtracted cDNA library of JA/BTH-treated rice leaf Oryza
sativa (japonica cultivar-group) cDNA clone JBI113, mRNA
sequence
Length = 799
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 667 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 608
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 607 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 555
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 487 cgcggaagtccaccttgtgcgccaccccggccttctc 451
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 637 agcagcgagtacccggtgaagacgccaacctcgat 671
||||||||||| ||||||||||| || ||||||||
Sbjct: 362 agcagcgagtagccggtgaagacacccacctcgat 328
>gb|CV721863.1|CV721863 YBH--05-J11.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--05-J11, mRNA sequence
Length = 455
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 182 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 123
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 122 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 70
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 318 ccgtcggcgatggcgagctggcagacgt 291
>gb|BP184560.1|BP184560 BP184560 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 13YPG001, mRNA
sequence
Length = 664
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 660 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 601
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 600 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 548
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 480 cgcggaagtccaccttgtgcgccaccccggccttctc 444
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 637 agcagcgagtacccggtgaagacgccaacctcgat 671
||||||||||| ||||||||||| || ||||||||
Sbjct: 355 agcagcgagtagccggtgaagacacccacctcgat 321
>dbj|AK071482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093N24, full
insert sequence
Length = 1098
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 674 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 615
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 614 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 562
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 494 cgcggaagtccaccttgtgcgccaccccggccttctc 458
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 810 ccgtcggcgatggcgagctggcagacgt 783
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 637 agcagcgagtacccggtgaagacgccaacctcgat 671
||||||||||| ||||||||||| || ||||||||
Sbjct: 369 agcagcgagtagccggtgaagacacccacctcgat 335
>dbj|AK104326.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F10, full
insert sequence
Length = 996
Score = 97.6 bits (49), Expect = 9e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 337 cccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgct 396
||||||||||||||||||| ||||| | || ||||| | | ||||||||||||| |||
Sbjct: 665 cccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgct 606
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 605 cgtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaac 553
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctc 544
|||||||||| | |||||||||||| |||||||||||
Sbjct: 485 cgcggaagtccaccttgtgcgccaccccggccttctc 449
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 201 ccgtcggcgatggcgacctggcagacgt 228
|||||||||||||||| |||||||||||
Sbjct: 801 ccgtcggcgatggcgagctggcagacgt 774
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 637 agcagcgagtacccggtgaagacgccaacctcgat 671
||||||||||| ||||||||||| || ||||||||
Sbjct: 360 agcagcgagtagccggtgaagacacccacctcgat 326
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,064,879
Number of Sequences: 438736
Number of extensions: 1064879
Number of successful extensions: 9373
Number of sequences better than 0.5: 112
Number of HSP's better than 0.5 without gapping: 111
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8684
Number of HSP's gapped (non-prelim): 587
length of query: 819
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 798
effective length of database: 2,791,206,460
effective search space: 2227382755080
effective search space used: 2227382755080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)