BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591248.2.1
(1222 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK101108.1| Oryza sativa (japonica cultivar-group) cDNA... 1281 0.0
dbj|AK105446.1| Oryza sativa (japonica cultivar-group) cDNA... 1281 0.0
ref|XM_467642.1| Oryza sativa (japonica cultivar-group), mRNA 1281 0.0
ref|XM_506957.1| PREDICTED Oryza sativa (japonica cultivar-... 1281 0.0
dbj|AK060686.1| Oryza sativa (japonica cultivar-group) cDNA... 1068 0.0
dbj|AP004050.1| Oryza sativa (japonica cultivar-group) chro... 626 e-177
dbj|AP005319.3| Oryza sativa (japonica cultivar-group) geno... 626 e-177
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 626 e-177
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 626 e-177
gb|AACV01005346.1| Oryza sativa (japonica cultivar-group) c... 557 e-156
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 557 e-156
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 557 e-156
dbj|AP005619.3| Oryza sativa (japonica cultivar-group) geno... 389 e-105
gb|AACV01013457.1| Oryza sativa (japonica cultivar-group) c... 389 e-105
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 389 e-105
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 389 e-105
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 389 e-105
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 389 e-105
gb|C97685.1|C97685 C97685 Rice callus Oryza sativa (japonic... 157 2e-035
dbj|AK106887.1| Oryza sativa (japonica cultivar-group) cDNA... 109 4e-021
dbj|AP003722.3| Oryza sativa (japonica cultivar-group) geno... 109 4e-021
gb|AACV01000869.1| Oryza sativa (japonica cultivar-group) c... 109 4e-021
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 109 4e-021
ref|NM_183708.1| Oryza sativa (japonica cultivar-group), p... 109 4e-021
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 109 4e-021
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 109 4e-021
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 109 4e-021
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 109 4e-021
gb|AACV01015966.1| Oryza sativa (japonica cultivar-group) c... 107 1e-020
ref|XM_472631.1| Oryza sativa (japonica cultivar-group), p... 107 1e-020
ref|NT_079862.2| Oryza sativa (japonica cultivar-group) 107 1e-020
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 107 1e-020
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 107 1e-020
emb|BX548155.1|OSJN00293 Oryza sativa genomic DNA, chromoso... 107 1e-020
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 107 1e-020
dbj|AK106851.1| Oryza sativa (japonica cultivar-group) cDNA... 70 3e-009
dbj|AP005657.3| Oryza sativa (japonica cultivar-group) geno... 70 3e-009
gb|AACV01017130.1| Oryza sativa (japonica cultivar-group) c... 70 3e-009
ref|XM_479767.1| Oryza sativa (japonica cultivar-group), mRNA 70 3e-009
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 70 3e-009
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 70 3e-009
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 70 3e-009
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 70 3e-009
dbj|AK106815.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
dbj|AK120767.1| Oryza sativa (japonica cultivar-group) cDNA... 66 5e-008
dbj|AP005682.2| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
gb|AACV01020439.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 66 5e-008
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
dbj|AP003885.1| Oryza sativa (japonica cultivar-group) chro... 56 5e-005
dbj|AP005304.1| Oryza sativa (japonica cultivar-group) chro... 56 5e-005
dbj|AK063458.1| Oryza sativa (japonica cultivar-group) cDNA... 56 5e-005
dbj|AK099370.1| Oryza sativa (japonica cultivar-group) cDNA... 56 5e-005
dbj|AK106726.1| Oryza sativa (japonica cultivar-group) cDNA... 56 5e-005
dbj|AP004463.2| Oryza sativa (japonica cultivar-group) geno... 56 5e-005
dbj|AP006754.1| Oryza sativa (japonica cultivar-group) geno... 56 5e-005
gb|AC135914.2| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
dbj|AP004885.3| Oryza sativa (japonica cultivar-group) geno... 56 5e-005
gb|AACV01003235.1| Oryza sativa (japonica cultivar-group) c... 56 5e-005
gb|AACV01011153.1| Oryza sativa (japonica cultivar-group) c... 56 5e-005
gb|AACV01018493.1| Oryza sativa (japonica cultivar-group) c... 56 5e-005
ref|NM_188958.1| Oryza sativa (japonica cultivar-group), mRNA 56 5e-005
ref|XM_463939.1| Oryza sativa (japonica cultivar-group), mRNA 56 5e-005
ref|XM_476150.1| Oryza sativa (japonica cultivar-group), p... 56 5e-005
ref|NT_107225.1| Oryza sativa (japonica cultivar-group) 56 5e-005
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 56 5e-005
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 56 5e-005
dbj|AK109524.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
dbj|AK111165.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
gb|AACV01000461.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
ref|NM_188489.1| Oryza sativa (japonica cultivar-group), p... 50 0.003
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 50 0.003
dbj|AP002094.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
dbj|AP002745.2| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
dbj|AP005720.3| Oryza sativa (japonica cultivar-group) geno... 46 0.045
gb|AACV01020111.1| Oryza sativa (japonica cultivar-group) c... 46 0.045
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 46 0.045
dbj|AK103304.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK119913.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
gb|AACV01000462.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01010653.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
ref|XM_474329.1| Oryza sativa (japonica cultivar-group), p... 44 0.18
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 44 0.18
ref|NM_188491.1| Oryza sativa (japonica cultivar-group), p... 44 0.18
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromoso... 44 0.18
>dbj|AK101108.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025E01, full
insert sequence
Length = 2072
Score = 1281 bits (646), Expect = 0.0
Identities = 869/942 (92%), Gaps = 5/942 (0%)
Strand = Plus / Minus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||||||||| || || || |||||||||||||||||||||||||||||||||||||
Sbjct: 1733 actcggctgggtttgggtgggcggagaagtaggcgaggaggcccatgagcggcgcgttga 1674
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagt 402
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |
Sbjct: 1673 tgtacgtggtgggctccgactgctggaacacggcgcgcgcgtcggggaacgcgtccgtgg 1614
Query: 403 cgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctgg 462
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct: 1613 cgtcgctgggcccgcccacgacggcgcccaccagcaggttggggttgggcgccgcgctgg 1554
Query: 463 tgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggca 522
|||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| |
Sbjct: 1553 cgtagtaggcggcgccgcccttgcacccgatccgcgccgggtgcgcggcgacggacggga 1494
Query: 523 gcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacg 582
| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1493 gggagctcccgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgtacg 1434
Query: 583 acatccgcagcgggttgtcgcccagtatgtagtccacctgccgcttggccacgcggcgga 642
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 1433 acatccgcagcgggttgtcgccgaggatgtagtccacctggcgcttggccacgcggcgga 1374
Query: 643 gctgcaccggcgacgccga--cgac-gagccgcacgagacgcgcccgccggcgtggctca 699
||||| |||||||||||| || | | ||||||||| || ||| |||||||||||||||
Sbjct: 1373 gctgcgtcggcgacgccgagccgcccgcgccgcacgacacccgcgcgccggcgtggctca 1314
Query: 700 ggtagttggagtaggccagcaggaggaacgacagctgcgtcacgtgctgcatgttgctgc 759
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 1313 ggtagttggagtaggcgagcagcaggaacgacagcgatgtcacgtgctgcatgttgctgc 1254
Query: 760 tcccgaccttgaacagcagcccgcctggggagtactggatctgggggtgattggagatgc 819
||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1253 ccccaaccttgaacagcagcccacctggggagtactggatctgggggtgattagagatgc 1194
Query: 820 cggggaggagggtgcacatgaagttgtcggcgttgacacggaaggactggaagtactcgt 879
| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1193 ccgggaggaggctgcacatgaagttgtcggcgttgacacggaacgactggaagtactcgt 1134
Query: 880 ccttccccatcagaacctcctttgagatgaggacgttgatgccggcgtgcttgttgtccc 939
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1133 ccttccccatcagaacctccttggagatgaggacgttgatgccggcgtgcttgttgtccc 1074
Query: 940 agccgaactcgttgatggcgtcgctggcgccgagcaccacctcgttcctcttgatgtact 999
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1073 agccgaactcgttgatggactcgctggcgccgagcaccacctcgttcttcttgatgtact 1014
Query: 1000 cgcggtactcccgccgccgcgtcgccttgtgcagccacgccnnnnnnnncacagcagctc 1059
|||||||||| || || |||| ||||||||||||||||||| || ||||||||
Sbjct: 1013 cgcggtactcgcggcggcgcgacgccttgtgcagccacgcc--gcgccccagagcagctc 956
Query: 1060 gtcctggtatccggagtagtcgcagtagcaggggcacaccgccgcgtggaggctgctgct 1119
||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 955 gtccttgtacccggagaagtcgcagtagcaggggcacaccgcgtcgtggaggctgctgct 896
Query: 1120 gtaggggccccggtacttgtccgcgaactcgaacacggcgacggcgcggtcgaggaggcg 1179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 895 gtaggggccccggtacttgtccgcgaactcgaacacggcgatggcgcggtcgaggaggcg 836
Query: 1180 cttggagtaggcggggtcggcgtcgcggaagacgatggagcc 1221
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 cttggagtaggcggggtcggcgtcgcggaagacgatggagcc 794
>dbj|AK105446.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B05, full
insert sequence
Length = 2067
Score = 1281 bits (646), Expect = 0.0
Identities = 869/942 (92%), Gaps = 5/942 (0%)
Strand = Plus / Minus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||||||||| || || || |||||||||||||||||||||||||||||||||||||
Sbjct: 1727 actcggctgggtttgggtgggcggagaagtaggcgaggaggcccatgagcggcgcgttga 1668
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagt 402
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |
Sbjct: 1667 tgtacgtggtgggctccgactgctggaacacggcgcgcgcgtcggggaacgcgtccgtgg 1608
Query: 403 cgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctgg 462
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct: 1607 cgtcgctgggcccgcccacgacggcgcccaccagcaggttggggttgggcgccgcgctgg 1548
Query: 463 tgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggca 522
|||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| |
Sbjct: 1547 cgtagtaggcggcgccgcccttgcacccgatccgcgccgggtgcgcggcgacggacggga 1488
Query: 523 gcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacg 582
| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1487 gggagctcccgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgtacg 1428
Query: 583 acatccgcagcgggttgtcgcccagtatgtagtccacctgccgcttggccacgcggcgga 642
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 1427 acatccgcagcgggttgtcgccgaggatgtagtccacctggcgcttggccacgcggcgga 1368
Query: 643 gctgcaccggcgacgccga--cgac-gagccgcacgagacgcgcccgccggcgtggctca 699
||||| |||||||||||| || | | ||||||||| || ||| |||||||||||||||
Sbjct: 1367 gctgcgtcggcgacgccgagccgcccgcgccgcacgacacccgcgcgccggcgtggctca 1308
Query: 700 ggtagttggagtaggccagcaggaggaacgacagctgcgtcacgtgctgcatgttgctgc 759
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 1307 ggtagttggagtaggcgagcagcaggaacgacagcgatgtcacgtgctgcatgttgctgc 1248
Query: 760 tcccgaccttgaacagcagcccgcctggggagtactggatctgggggtgattggagatgc 819
||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1247 ccccaaccttgaacagcagcccacctggggagtactggatctgggggtgattagagatgc 1188
Query: 820 cggggaggagggtgcacatgaagttgtcggcgttgacacggaaggactggaagtactcgt 879
| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1187 ccgggaggaggctgcacatgaagttgtcggcgttgacacggaacgactggaagtactcgt 1128
Query: 880 ccttccccatcagaacctcctttgagatgaggacgttgatgccggcgtgcttgttgtccc 939
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1127 ccttccccatcagaacctccttggagatgaggacgttgatgccggcgtgcttgttgtccc 1068
Query: 940 agccgaactcgttgatggcgtcgctggcgccgagcaccacctcgttcctcttgatgtact 999
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1067 agccgaactcgttgatggactcgctggcgccgagcaccacctcgttcttcttgatgtact 1008
Query: 1000 cgcggtactcccgccgccgcgtcgccttgtgcagccacgccnnnnnnnncacagcagctc 1059
|||||||||| || || |||| ||||||||||||||||||| || ||||||||
Sbjct: 1007 cgcggtactcgcggcggcgcgacgccttgtgcagccacgcc--gcgccccagagcagctc 950
Query: 1060 gtcctggtatccggagtagtcgcagtagcaggggcacaccgccgcgtggaggctgctgct 1119
||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 949 gtccttgtacccggagaagtcgcagtagcaggggcacaccgcgtcgtggaggctgctgct 890
Query: 1120 gtaggggccccggtacttgtccgcgaactcgaacacggcgacggcgcggtcgaggaggcg 1179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 889 gtaggggccccggtacttgtccgcgaactcgaacacggcgatggcgcggtcgaggaggcg 830
Query: 1180 cttggagtaggcggggtcggcgtcgcggaagacgatggagcc 1221
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 cttggagtaggcggggtcggcgtcgcggaagacgatggagcc 788
>ref|XM_467642.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2067
Score = 1281 bits (646), Expect = 0.0
Identities = 869/942 (92%), Gaps = 5/942 (0%)
Strand = Plus / Minus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||||||||| || || || |||||||||||||||||||||||||||||||||||||
Sbjct: 1727 actcggctgggtttgggtgggcggagaagtaggcgaggaggcccatgagcggcgcgttga 1668
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagt 402
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |
Sbjct: 1667 tgtacgtggtgggctccgactgctggaacacggcgcgcgcgtcggggaacgcgtccgtgg 1608
Query: 403 cgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctgg 462
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct: 1607 cgtcgctgggcccgcccacgacggcgcccaccagcaggttggggttgggcgccgcgctgg 1548
Query: 463 tgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggca 522
|||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| |
Sbjct: 1547 cgtagtaggcggcgccgcccttgcacccgatccgcgccgggtgcgcggcgacggacggga 1488
Query: 523 gcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacg 582
| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1487 gggagctcccgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgtacg 1428
Query: 583 acatccgcagcgggttgtcgcccagtatgtagtccacctgccgcttggccacgcggcgga 642
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 1427 acatccgcagcgggttgtcgccgaggatgtagtccacctggcgcttggccacgcggcgga 1368
Query: 643 gctgcaccggcgacgccga--cgac-gagccgcacgagacgcgcccgccggcgtggctca 699
||||| |||||||||||| || | | ||||||||| || ||| |||||||||||||||
Sbjct: 1367 gctgcgtcggcgacgccgagccgcccgcgccgcacgacacccgcgcgccggcgtggctca 1308
Query: 700 ggtagttggagtaggccagcaggaggaacgacagctgcgtcacgtgctgcatgttgctgc 759
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 1307 ggtagttggagtaggcgagcagcaggaacgacagcgatgtcacgtgctgcatgttgctgc 1248
Query: 760 tcccgaccttgaacagcagcccgcctggggagtactggatctgggggtgattggagatgc 819
||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1247 ccccaaccttgaacagcagcccacctggggagtactggatctgggggtgattagagatgc 1188
Query: 820 cggggaggagggtgcacatgaagttgtcggcgttgacacggaaggactggaagtactcgt 879
| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1187 ccgggaggaggctgcacatgaagttgtcggcgttgacacggaacgactggaagtactcgt 1128
Query: 880 ccttccccatcagaacctcctttgagatgaggacgttgatgccggcgtgcttgttgtccc 939
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1127 ccttccccatcagaacctccttggagatgaggacgttgatgccggcgtgcttgttgtccc 1068
Query: 940 agccgaactcgttgatggcgtcgctggcgccgagcaccacctcgttcctcttgatgtact 999
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1067 agccgaactcgttgatggactcgctggcgccgagcaccacctcgttcttcttgatgtact 1008
Query: 1000 cgcggtactcccgccgccgcgtcgccttgtgcagccacgccnnnnnnnncacagcagctc 1059
|||||||||| || || |||| ||||||||||||||||||| || ||||||||
Sbjct: 1007 cgcggtactcgcggcggcgcgacgccttgtgcagccacgcc--gcgccccagagcagctc 950
Query: 1060 gtcctggtatccggagtagtcgcagtagcaggggcacaccgccgcgtggaggctgctgct 1119
||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 949 gtccttgtacccggagaagtcgcagtagcaggggcacaccgcgtcgtggaggctgctgct 890
Query: 1120 gtaggggccccggtacttgtccgcgaactcgaacacggcgacggcgcggtcgaggaggcg 1179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 889 gtaggggccccggtacttgtccgcgaactcgaacacggcgatggcgcggtcgaggaggcg 830
Query: 1180 cttggagtaggcggggtcggcgtcgcggaagacgatggagcc 1221
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 cttggagtaggcggggtcggcgtcgcggaagacgatggagcc 788
>ref|XM_506957.1| PREDICTED Oryza sativa (japonica cultivar-group), P0643A10.32 mRNA
Length = 2072
Score = 1281 bits (646), Expect = 0.0
Identities = 869/942 (92%), Gaps = 5/942 (0%)
Strand = Plus / Minus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||||||||| || || || |||||||||||||||||||||||||||||||||||||
Sbjct: 1733 actcggctgggtttgggtgggcggagaagtaggcgaggaggcccatgagcggcgcgttga 1674
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagt 402
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |
Sbjct: 1673 tgtacgtggtgggctccgactgctggaacacggcgcgcgcgtcggggaacgcgtccgtgg 1614
Query: 403 cgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctgg 462
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct: 1613 cgtcgctgggcccgcccacgacggcgcccaccagcaggttggggttgggcgccgcgctgg 1554
Query: 463 tgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggca 522
|||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| |
Sbjct: 1553 cgtagtaggcggcgccgcccttgcacccgatccgcgccgggtgcgcggcgacggacggga 1494
Query: 523 gcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacg 582
| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1493 gggagctcccgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgtacg 1434
Query: 583 acatccgcagcgggttgtcgcccagtatgtagtccacctgccgcttggccacgcggcgga 642
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 1433 acatccgcagcgggttgtcgccgaggatgtagtccacctggcgcttggccacgcggcgga 1374
Query: 643 gctgcaccggcgacgccga--cgac-gagccgcacgagacgcgcccgccggcgtggctca 699
||||| |||||||||||| || | | ||||||||| || ||| |||||||||||||||
Sbjct: 1373 gctgcgtcggcgacgccgagccgcccgcgccgcacgacacccgcgcgccggcgtggctca 1314
Query: 700 ggtagttggagtaggccagcaggaggaacgacagctgcgtcacgtgctgcatgttgctgc 759
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 1313 ggtagttggagtaggcgagcagcaggaacgacagcgatgtcacgtgctgcatgttgctgc 1254
Query: 760 tcccgaccttgaacagcagcccgcctggggagtactggatctgggggtgattggagatgc 819
||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1253 ccccaaccttgaacagcagcccacctggggagtactggatctgggggtgattagagatgc 1194
Query: 820 cggggaggagggtgcacatgaagttgtcggcgttgacacggaaggactggaagtactcgt 879
| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1193 ccgggaggaggctgcacatgaagttgtcggcgttgacacggaacgactggaagtactcgt 1134
Query: 880 ccttccccatcagaacctcctttgagatgaggacgttgatgccggcgtgcttgttgtccc 939
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1133 ccttccccatcagaacctccttggagatgaggacgttgatgccggcgtgcttgttgtccc 1074
Query: 940 agccgaactcgttgatggcgtcgctggcgccgagcaccacctcgttcctcttgatgtact 999
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1073 agccgaactcgttgatggactcgctggcgccgagcaccacctcgttcttcttgatgtact 1014
Query: 1000 cgcggtactcccgccgccgcgtcgccttgtgcagccacgccnnnnnnnncacagcagctc 1059
|||||||||| || || |||| ||||||||||||||||||| || ||||||||
Sbjct: 1013 cgcggtactcgcggcggcgcgacgccttgtgcagccacgcc--gcgccccagagcagctc 956
Query: 1060 gtcctggtatccggagtagtcgcagtagcaggggcacaccgccgcgtggaggctgctgct 1119
||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 955 gtccttgtacccggagaagtcgcagtagcaggggcacaccgcgtcgtggaggctgctgct 896
Query: 1120 gtaggggccccggtacttgtccgcgaactcgaacacggcgacggcgcggtcgaggaggcg 1179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 895 gtaggggccccggtacttgtccgcgaactcgaacacggcgatggcgcggtcgaggaggcg 836
Query: 1180 cttggagtaggcggggtcggcgtcgcggaagacgatggagcc 1221
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 cttggagtaggcggggtcggcgtcgcggaagacgatggagcc 794
>dbj|AK060686.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G12, full
insert sequence
Length = 2013
Score = 1068 bits (539), Expect = 0.0
Identities = 830/928 (89%), Gaps = 2/928 (0%)
Strand = Plus / Minus
Query: 292 ggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
||||||| || ||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 1524 ggttggggtgggccgagaagtaggcgaggaggccgaggagcggggcgttgatgtacgtgg 1465
Query: 352 tgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagtcgtcggtgg 411
||||||||||||||||||||||||| |||||||||||||| |||||| | || | |||
Sbjct: 1464 tgggctcggactgctggaacacggcccgcgcgtcggggaacgcgtcgctggtgttgctgg 1405
Query: 412 gcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctggtgtagtagg 471
|||||||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct: 1404 gcccgcccaccacggcgcccaccaggaggttcgggttgggcgccgcgctggcgtagtagg 1345
Query: 472 cggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggcagcgagctgg 531
|| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 1344 tcgccccggccttgcacccgatctgcgccgggtgcgccgccaccgacggcagcgagctcc 1285
Query: 532 cgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgca 591
| ||||||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 1284 cccggtggtggatccgcagcgggtacctcgacccgtaacccaccatgtacgacatccgca 1225
Query: 592 gcgggttgtcgcccagtatgtagtccacctgccgcttggccacgcggcggagctgcaccg 651
|||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| || |
Sbjct: 1224 gcgggttgtcgcccaggatgtagtccacctggcgcttggcgacgcgtcggagctggacgg 1165
Query: 652 gcgacgccgacgacgagccgcacgagacgcgcccgccggcgtggctcaggtagttggagt 711
| || || || || | |||||| | |||||| || ||||||||| || ||||||||||
Sbjct: 1164 gggaggcggaggaggtgccgcaggggacgcggacgttggcgtggctgagatagttggagt 1105
Query: 712 aggccagcaggaggaacgacagctgcgtcacgtgctgcatgttgctgctcccgaccttga 771
| || || ||||||||||||||| |||||||||||||||||||||| | || ||||||
Sbjct: 1104 atgcgaggaggaggaacgacagcgacgtcacgtgctgcatgttgctgttgcccgccttga 1045
Query: 772 acagcagcccgcctggggagtactggatctgggggtgattggagatgccggggaggaggg 831
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 1044 acagcagcccacctggggagtactggatctggggatgattagagatgccggggaggaggg 985
Query: 832 tgcacatgaagttgtcggcgttgacacggaaggactggaagtactcgtccttccccatca 891
|||| ||||||||||||||||| || ||||| |||||||| |||||||||||||||||||
Sbjct: 984 tgcagatgaagttgtcggcgttcacgcggaacgactggaaatactcgtccttccccatca 925
Query: 892 gaacctcctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgt 951
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 ggacctccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgt 865
Query: 952 tgatggcgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactccc 1011
||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 864 tgatggcctcgctggcgccgagcaccacctcgttccgcttgatgtagtcgcggtactccc 805
Query: 1012 gccgccgcgtcgccttgtgcagccacgccnnnnnnnncacagcagctcgtcctggtatcc 1071
| ||||||| ||||||||||||||||||| ||||||| |||||||| ||| ||
Sbjct: 804 ggcgccgcgacgccttgtgcagccacgcc--gcgccccacagcaactcgtccttgtagcc 747
Query: 1072 ggagtagtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccccg 1131
||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct: 746 ggagtagtcgcagtagcaggggcacacggccgcgtgcaggctgctgctgtatgggcccct 687
Query: 1132 gtacttgtccgcgaactcgaacacggcgacggcgcggtcgaggaggcgcttggagtaggc 1191
|||||||||||||||||||||||| || |||||||||||||||||| ||||||||| |
Sbjct: 686 gtacttgtccgcgaactcgaacacctggatggcgcggtcgaggaggcggttggagtagtc 627
Query: 1192 ggggtcggcgtcgcggaagacgatggag 1219
||||||||||||||||||||||||||||
Sbjct: 626 ggggtcggcgtcgcggaagacgatggag 599
>dbj|AP004050.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1212_E12,
*** SEQUENCING IN PROGRESS ***
Length = 128866
Score = 626 bits (316), Expect = e-177
Identities = 461/507 (90%), Gaps = 3/507 (0%)
Strand = Plus / Minus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||||||||| || || || |||||||||||||||||||||||||||||||||||||
Sbjct: 35721 actcggctgggtttgggtgggcggagaagtaggcgaggaggcccatgagcggcgcgttga 35662
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagt 402
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |
Sbjct: 35661 tgtacgtggtgggctccgactgctggaacacggcgcgcgcgtcggggaacgcgtccgtgg 35602
Query: 403 cgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctgg 462
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct: 35601 cgtcgctgggcccgcccacgacggcgcccaccagcaggttggggttgggcgccgcgctgg 35542
Query: 463 tgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggca 522
|||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| |
Sbjct: 35541 cgtagtaggcggcgccgcccttgcacccgatccgcgccgggtgcgcggcgacggacggga 35482
Query: 523 gcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacg 582
| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 35481 gggagctcccgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgtacg 35422
Query: 583 acatccgcagcgggttgtcgcccagtatgtagtccacctgccgcttggccacgcggcgga 642
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 35421 acatccgcagcgggttgtcgccgaggatgtagtccacctggcgcttggccacgcggcgga 35362
Query: 643 gctgcaccggcgacgccga--cg-acgagccgcacgagacgcgcccgccggcgtggctca 699
||||| |||||||||||| || || ||||||||| || ||| |||||||||||||||
Sbjct: 35361 gctgcgtcggcgacgccgagccgcccgcgccgcacgacacccgcgcgccggcgtggctca 35302
Query: 700 ggtagttggagtaggccagcaggaggaacgacagctgcgtcacgtgctgcatgttgctgc 759
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 35301 ggtagttggagtaggcgagcagcaggaacgacagcgatgtcacgtgctgcatgttgctgc 35242
Query: 760 tcccgaccttgaacagcagcccgcctg 786
||| ||||||||||||||||| ||||
Sbjct: 35241 ccccaaccttgaacagcagcccacctg 35215
Score = 343 bits (173), Expect = 1e-091
Identities = 236/258 (91%), Gaps = 2/258 (0%)
Strand = Plus / Minus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33545 ccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 33486
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
Sbjct: 33485 actcgctggcgccgagcaccacctcgttcttcttgatgtactcgcggtactcgcggcggc 33426
Query: 1018 gcgtcgccttgtgcagccacgccnnnnnnnncacagcagctcgtcctggtatccggagta 1077
||| ||||||||||||||||||| || ||||||||||||| ||| |||||| |
Sbjct: 33425 gcgacgccttgtgcagccacgcc--gcgccccagagcagctcgtccttgtacccggagaa 33368
Query: 1078 gtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccccggtactt 1137
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 33367 gtcgcagtagcaggggcacaccgcgtcgtggaggctgctgctgtaggggccccggtactt 33308
Query: 1138 gtccgcgaactcgaacac 1155
||||||||||||||||||
Sbjct: 33307 gtccgcgaactcgaacac 33290
Score = 202 bits (102), Expect = 3e-049
Identities = 114/118 (96%)
Strand = Plus / Minus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 35122 cctggggagtactggatctgggggtgattagagatgcccgggaggaggctgcacatgaag 35063
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 35062 ttgtcggcgttgacacggaacgactggaagtactcgtccttccccatcagaacctcct 35005
Score = 127 bits (64), Expect = 2e-026
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 1154 acggcgacggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 1213
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33206 acggcgatggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 33147
Query: 1214 atggagcc 1221
||||||||
Sbjct: 33146 atggagcc 33139
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0643A10
Length = 187931
Score = 626 bits (316), Expect = e-177
Identities = 461/507 (90%), Gaps = 3/507 (0%)
Strand = Plus / Minus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||||||||| || || || |||||||||||||||||||||||||||||||||||||
Sbjct: 107422 actcggctgggtttgggtgggcggagaagtaggcgaggaggcccatgagcggcgcgttga 107363
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagt 402
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |
Sbjct: 107362 tgtacgtggtgggctccgactgctggaacacggcgcgcgcgtcggggaacgcgtccgtgg 107303
Query: 403 cgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctgg 462
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct: 107302 cgtcgctgggcccgcccacgacggcgcccaccagcaggttggggttgggcgccgcgctgg 107243
Query: 463 tgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggca 522
|||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| |
Sbjct: 107242 cgtagtaggcggcgccgcccttgcacccgatccgcgccgggtgcgcggcgacggacggga 107183
Query: 523 gcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacg 582
| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 107182 gggagctcccgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgtacg 107123
Query: 583 acatccgcagcgggttgtcgcccagtatgtagtccacctgccgcttggccacgcggcgga 642
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 107122 acatccgcagcgggttgtcgccgaggatgtagtccacctggcgcttggccacgcggcgga 107063
Query: 643 gctgcaccggcgacgccga--cg-acgagccgcacgagacgcgcccgccggcgtggctca 699
||||| |||||||||||| || || ||||||||| || ||| |||||||||||||||
Sbjct: 107062 gctgcgtcggcgacgccgagccgcccgcgccgcacgacacccgcgcgccggcgtggctca 107003
Query: 700 ggtagttggagtaggccagcaggaggaacgacagctgcgtcacgtgctgcatgttgctgc 759
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 107002 ggtagttggagtaggcgagcagcaggaacgacagcgatgtcacgtgctgcatgttgctgc 106943
Query: 760 tcccgaccttgaacagcagcccgcctg 786
||| ||||||||||||||||| ||||
Sbjct: 106942 ccccaaccttgaacagcagcccacctg 106916
Score = 343 bits (173), Expect = 1e-091
Identities = 236/258 (91%), Gaps = 2/258 (0%)
Strand = Plus / Minus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105246 ccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 105187
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
Sbjct: 105186 actcgctggcgccgagcaccacctcgttcttcttgatgtactcgcggtactcgcggcggc 105127
Query: 1018 gcgtcgccttgtgcagccacgccnnnnnnnncacagcagctcgtcctggtatccggagta 1077
||| ||||||||||||||||||| || ||||||||||||| ||| |||||| |
Sbjct: 105126 gcgacgccttgtgcagccacgcc--gcgccccagagcagctcgtccttgtacccggagaa 105069
Query: 1078 gtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccccggtactt 1137
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 105068 gtcgcagtagcaggggcacaccgcgtcgtggaggctgctgctgtaggggccccggtactt 105009
Query: 1138 gtccgcgaactcgaacac 1155
||||||||||||||||||
Sbjct: 105008 gtccgcgaactcgaacac 104991
Score = 202 bits (102), Expect = 3e-049
Identities = 114/118 (96%)
Strand = Plus / Minus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 106823 cctggggagtactggatctgggggtgattagagatgcccgggaggaggctgcacatgaag 106764
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 106763 ttgtcggcgttgacacggaacgactggaagtactcgtccttccccatcagaacctcct 106706
Score = 127 bits (64), Expect = 2e-026
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 1154 acggcgacggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 1213
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104907 acggcgatggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 104848
Query: 1214 atggagcc 1221
||||||||
Sbjct: 104847 atggagcc 104840
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 626 bits (316), Expect = e-177
Identities = 461/507 (90%), Gaps = 3/507 (0%)
Strand = Plus / Minus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||||||||| || || || |||||||||||||||||||||||||||||||||||||
Sbjct: 5760413 actcggctgggtttgggtgggcggagaagtaggcgaggaggcccatgagcggcgcgttga 5760354
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagt 402
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |
Sbjct: 5760353 tgtacgtggtgggctccgactgctggaacacggcgcgcgcgtcggggaacgcgtccgtgg 5760294
Query: 403 cgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctgg 462
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct: 5760293 cgtcgctgggcccgcccacgacggcgcccaccagcaggttggggttgggcgccgcgctgg 5760234
Query: 463 tgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggca 522
|||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| |
Sbjct: 5760233 cgtagtaggcggcgccgcccttgcacccgatccgcgccgggtgcgcggcgacggacggga 5760174
Query: 523 gcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacg 582
| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 5760173 gggagctcccgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgtacg 5760114
Query: 583 acatccgcagcgggttgtcgcccagtatgtagtccacctgccgcttggccacgcggcgga 642
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 5760113 acatccgcagcgggttgtcgccgaggatgtagtccacctggcgcttggccacgcggcgga 5760054
Query: 643 gctgcaccggcgacgccga--cg-acgagccgcacgagacgcgcccgccggcgtggctca 699
||||| |||||||||||| || || ||||||||| || ||| |||||||||||||||
Sbjct: 5760053 gctgcgtcggcgacgccgagccgcccgcgccgcacgacacccgcgcgccggcgtggctca 5759994
Query: 700 ggtagttggagtaggccagcaggaggaacgacagctgcgtcacgtgctgcatgttgctgc 759
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 5759993 ggtagttggagtaggcgagcagcaggaacgacagcgatgtcacgtgctgcatgttgctgc 5759934
Query: 760 tcccgaccttgaacagcagcccgcctg 786
||| ||||||||||||||||| ||||
Sbjct: 5759933 ccccaaccttgaacagcagcccacctg 5759907
Score = 343 bits (173), Expect = 1e-091
Identities = 236/258 (91%), Gaps = 2/258 (0%)
Strand = Plus / Minus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5758237 ccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 5758178
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
Sbjct: 5758177 actcgctggcgccgagcaccacctcgttcttcttgatgtactcgcggtactcgcggcggc 5758118
Query: 1018 gcgtcgccttgtgcagccacgccnnnnnnnncacagcagctcgtcctggtatccggagta 1077
||| ||||||||||||||||||| || ||||||||||||| ||| |||||| |
Sbjct: 5758117 gcgacgccttgtgcagccacgcc--gcgccccagagcagctcgtccttgtacccggagaa 5758060
Query: 1078 gtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccccggtactt 1137
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5758059 gtcgcagtagcaggggcacaccgcgtcgtggaggctgctgctgtaggggccccggtactt 5758000
Query: 1138 gtccgcgaactcgaacac 1155
||||||||||||||||||
Sbjct: 5757999 gtccgcgaactcgaacac 5757982
Score = 202 bits (102), Expect = 3e-049
Identities = 114/118 (96%)
Strand = Plus / Minus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 5759814 cctggggagtactggatctgggggtgattagagatgcccgggaggaggctgcacatgaag 5759755
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5759754 ttgtcggcgttgacacggaacgactggaagtactcgtccttccccatcagaacctcct 5759697
Score = 127 bits (64), Expect = 2e-026
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 1154 acggcgacggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 1213
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5757898 acggcgatggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 5757839
Query: 1214 atggagcc 1221
||||||||
Sbjct: 5757838 atggagcc 5757831
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 626 bits (316), Expect = e-177
Identities = 461/507 (90%), Gaps = 3/507 (0%)
Strand = Plus / Minus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||||||||| || || || |||||||||||||||||||||||||||||||||||||
Sbjct: 30595414 actcggctgggtttgggtgggcggagaagtaggcgaggaggcccatgagcggcgcgttga 30595355
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagt 402
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |
Sbjct: 30595354 tgtacgtggtgggctccgactgctggaacacggcgcgcgcgtcggggaacgcgtccgtgg 30595295
Query: 403 cgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctgg 462
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct: 30595294 cgtcgctgggcccgcccacgacggcgcccaccagcaggttggggttgggcgccgcgctgg 30595235
Query: 463 tgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggca 522
|||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| |
Sbjct: 30595234 cgtagtaggcggcgccgcccttgcacccgatccgcgccgggtgcgcggcgacggacggga 30595175
Query: 523 gcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacg 582
| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 30595174 gggagctcccgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgtacg 30595115
Query: 583 acatccgcagcgggttgtcgcccagtatgtagtccacctgccgcttggccacgcggcgga 642
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 30595114 acatccgcagcgggttgtcgccgaggatgtagtccacctggcgcttggccacgcggcgga 30595055
Query: 643 gctgcaccggcgacgccga--cg-acgagccgcacgagacgcgcccgccggcgtggctca 699
||||| |||||||||||| || || ||||||||| || ||| |||||||||||||||
Sbjct: 30595054 gctgcgtcggcgacgccgagccgcccgcgccgcacgacacccgcgcgccggcgtggctca 30594995
Query: 700 ggtagttggagtaggccagcaggaggaacgacagctgcgtcacgtgctgcatgttgctgc 759
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 30594994 ggtagttggagtaggcgagcagcaggaacgacagcgatgtcacgtgctgcatgttgctgc 30594935
Query: 760 tcccgaccttgaacagcagcccgcctg 786
||| ||||||||||||||||| ||||
Sbjct: 30594934 ccccaaccttgaacagcagcccacctg 30594908
Score = 343 bits (173), Expect = 1e-091
Identities = 236/258 (91%), Gaps = 2/258 (0%)
Strand = Plus / Minus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30593238 ccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 30593179
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
Sbjct: 30593178 actcgctggcgccgagcaccacctcgttcttcttgatgtactcgcggtactcgcggcggc 30593119
Query: 1018 gcgtcgccttgtgcagccacgccnnnnnnnncacagcagctcgtcctggtatccggagta 1077
||| ||||||||||||||||||| || ||||||||||||| ||| |||||| |
Sbjct: 30593118 gcgacgccttgtgcagccacgcc--gcgccccagagcagctcgtccttgtacccggagaa 30593061
Query: 1078 gtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccccggtactt 1137
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 30593060 gtcgcagtagcaggggcacaccgcgtcgtggaggctgctgctgtaggggccccggtactt 30593001
Query: 1138 gtccgcgaactcgaacac 1155
||||||||||||||||||
Sbjct: 30593000 gtccgcgaactcgaacac 30592983
Score = 202 bits (102), Expect = 3e-049
Identities = 114/118 (96%)
Strand = Plus / Minus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 30594815 cctggggagtactggatctgggggtgattagagatgcccgggaggaggctgcacatgaag 30594756
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 30594755 ttgtcggcgttgacacggaacgactggaagtactcgtccttccccatcagaacctcct 30594698
Score = 127 bits (64), Expect = 2e-026
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 1154 acggcgacggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 1213
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30592899 acggcgatggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 30592840
Query: 1214 atggagcc 1221
||||||||
Sbjct: 30592839 atggagcc 30592832
Score = 56.0 bits (28), Expect = 5e-005
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 547 gccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgccca 606
|||||||| ||| ||| ||| ||||||||||||||||||||| | ||| || | || |
Sbjct: 1239781 gccgcgggtacctcgccccgaaccccaccatgtacgacatccccgccggattcgccccga 1239722
Query: 607 gtatgtagtccacctg 622
||||||||||||||||
Sbjct: 1239721 gtatgtagtccacctg 1239706
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1183 ggagtaggcggggtcggcgtcgcggaagacgatggag 1219
|||||||| |||||||| | |||||||||||||||||
Sbjct: 1237793 ggagtaggaggggtcggagacgcggaagacgatggag 1237757
>gb|AACV01005346.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005346, whole
genome shotgun sequence
Length = 61964
Score = 557 bits (281), Expect = e-156
Identities = 455/508 (89%), Gaps = 5/508 (0%)
Strand = Plus / Plus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||||||||| || || || ||||||||||||||||||||||||||| |||| ||||
Sbjct: 2461 actcggctgggtttgg-tgggcggagaagtaggcgaggaggcccatgagccgcgccttga 2519
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtc-ggggaaggcgtcggag 401
|||||||||||||||| ||||| |||||||| |||||||| || |||||| ||||| | |
Sbjct: 2520 tgtacgtggtgggctccgactggtggaacaccgcgcgcgcctccggggaacgcgtccgtg 2579
Query: 402 tcgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctg 461
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct: 2580 gcgtcgctgggcccgcccacgacggcgcccaccagcaggttggggttgggcgccgcgctg 2639
Query: 462 gtgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggc 521
| |||||| ||||||||| ||||||| |||||||||||||||||||| || ||||||||
Sbjct: 2640 gcgtagtaagcggcgccgcccttgcacccgatccgcgccgggtgcgcggcgacggacggg 2699
Query: 522 agcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtac 581
|| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 2700 agggagctcccgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgtac 2759
Query: 582 gacatccgcagcgggttgtcgcccagtatgtagtccacctgccgcttggccacgcggcgg 641
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 2760 gacatccgcagcgggttgtcgccgaggatgtagtccacctggcgcttggccacgcggcgg 2819
Query: 642 agctgcaccggcgacgccga--cg-acgagccgcacgagacgcgcccgccggcgtggctc 698
|||||| |||||||||||| || || ||||||||| || ||| ||||||||||||||
Sbjct: 2820 agctgcgtcggcgacgccgagccgcccgcgccgcacgacacccgcgcgccggcgtggctc 2879
Query: 699 aggtagttggagtaggccagcaggaggaacgacagctgcgtcacgtgctgcatgttgctg 758
||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||
Sbjct: 2880 aggtagttggagtaggcgagcagcaggaacgacagcgatgtcacgtgctgcatgttgctg 2939
Query: 759 ctcccgaccttgaacagcagcccgcctg 786
| ||| ||||||||||||||||| ||||
Sbjct: 2940 cccccaaccttgaacagcagcccacctg 2967
Score = 343 bits (173), Expect = 1e-091
Identities = 236/258 (91%), Gaps = 2/258 (0%)
Strand = Plus / Plus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4637 ccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 4696
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
Sbjct: 4697 actcgctggcgccgagcaccacctcgttcttcttgatgtactcgcggtactcgcggcggc 4756
Query: 1018 gcgtcgccttgtgcagccacgccnnnnnnnncacagcagctcgtcctggtatccggagta 1077
||| ||||||||||||||||||| || ||||||||||||| ||| |||||| |
Sbjct: 4757 gcgacgccttgtgcagccacgcc--gcgccccagagcagctcgtccttgtacccggagaa 4814
Query: 1078 gtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccccggtactt 1137
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4815 gtcgcagtagcaggggcacaccgcgtcgtggaggctgctgctgtaggggccccggtactt 4874
Query: 1138 gtccgcgaactcgaacac 1155
||||||||||||||||||
Sbjct: 4875 gtccgcgaactcgaacac 4892
Score = 202 bits (102), Expect = 3e-049
Identities = 114/118 (96%)
Strand = Plus / Plus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 3060 cctggggagtactggatctgggggtgattagagatgcccgggaggaggctgcacatgaag 3119
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3120 ttgtcggcgttgacacggaacgactggaagtactcgtccttccccatcagaacctcct 3177
Score = 127 bits (64), Expect = 2e-026
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1154 acggcgacggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 1213
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4976 acggcgatggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 5035
Query: 1214 atggagcc 1221
||||||||
Sbjct: 5036 atggagcc 5043
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 557 bits (281), Expect = e-156
Identities = 455/508 (89%), Gaps = 5/508 (0%)
Strand = Plus / Minus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||||||||| || || || ||||||||||||||||||||||||||| |||| ||||
Sbjct: 17092717 actcggctgggtttgg-tgggcggagaagtaggcgaggaggcccatgagccgcgccttga 17092659
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtc-ggggaaggcgtcggag 401
|||||||||||||||| ||||| |||||||| |||||||| || |||||| ||||| | |
Sbjct: 17092658 tgtacgtggtgggctccgactggtggaacaccgcgcgcgcctccggggaacgcgtccgtg 17092599
Query: 402 tcgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctg 461
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct: 17092598 gcgtcgctgggcccgcccacgacggcgcccaccagcaggttggggttgggcgccgcgctg 17092539
Query: 462 gtgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggc 521
| |||||| ||||||||| ||||||| |||||||||||||||||||| || ||||||||
Sbjct: 17092538 gcgtagtaagcggcgccgcccttgcacccgatccgcgccgggtgcgcggcgacggacggg 17092479
Query: 522 agcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtac 581
|| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 17092478 agggagctcccgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgtac 17092419
Query: 582 gacatccgcagcgggttgtcgcccagtatgtagtccacctgccgcttggccacgcggcgg 641
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 17092418 gacatccgcagcgggttgtcgccgaggatgtagtccacctggcgcttggccacgcggcgg 17092359
Query: 642 agctgcaccggcgacgccga--cg-acgagccgcacgagacgcgcccgccggcgtggctc 698
|||||| |||||||||||| || || ||||||||| || ||| ||||||||||||||
Sbjct: 17092358 agctgcgtcggcgacgccgagccgcccgcgccgcacgacacccgcgcgccggcgtggctc 17092299
Query: 699 aggtagttggagtaggccagcaggaggaacgacagctgcgtcacgtgctgcatgttgctg 758
||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||
Sbjct: 17092298 aggtagttggagtaggcgagcagcaggaacgacagcgatgtcacgtgctgcatgttgctg 17092239
Query: 759 ctcccgaccttgaacagcagcccgcctg 786
| ||| ||||||||||||||||| ||||
Sbjct: 17092238 cccccaaccttgaacagcagcccacctg 17092211
Score = 343 bits (173), Expect = 1e-091
Identities = 236/258 (91%), Gaps = 2/258 (0%)
Strand = Plus / Minus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17090541 ccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 17090482
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
Sbjct: 17090481 actcgctggcgccgagcaccacctcgttcttcttgatgtactcgcggtactcgcggcggc 17090422
Query: 1018 gcgtcgccttgtgcagccacgccnnnnnnnncacagcagctcgtcctggtatccggagta 1077
||| ||||||||||||||||||| || ||||||||||||| ||| |||||| |
Sbjct: 17090421 gcgacgccttgtgcagccacgcc--gcgccccagagcagctcgtccttgtacccggagaa 17090364
Query: 1078 gtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccccggtactt 1137
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 17090363 gtcgcagtagcaggggcacaccgcgtcgtggaggctgctgctgtaggggccccggtactt 17090304
Query: 1138 gtccgcgaactcgaacac 1155
||||||||||||||||||
Sbjct: 17090303 gtccgcgaactcgaacac 17090286
Score = 202 bits (102), Expect = 3e-049
Identities = 114/118 (96%)
Strand = Plus / Minus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 17092118 cctggggagtactggatctgggggtgattagagatgcccgggaggaggctgcacatgaag 17092059
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 17092058 ttgtcggcgttgacacggaacgactggaagtactcgtccttccccatcagaacctcct 17092001
Score = 127 bits (64), Expect = 2e-026
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 1154 acggcgacggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 1213
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17090202 acggcgatggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 17090143
Query: 1214 atggagcc 1221
||||||||
Sbjct: 17090142 atggagcc 17090135
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 557 bits (281), Expect = e-156
Identities = 455/508 (89%), Gaps = 5/508 (0%)
Strand = Plus / Minus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||||||||| || || || ||||||||||||||||||||||||||| |||| ||||
Sbjct: 30545781 actcggctgggtttgg-tgggcggagaagtaggcgaggaggcccatgagccgcgccttga 30545723
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtc-ggggaaggcgtcggag 401
|||||||||||||||| ||||| |||||||| |||||||| || |||||| ||||| | |
Sbjct: 30545722 tgtacgtggtgggctccgactggtggaacaccgcgcgcgcctccggggaacgcgtccgtg 30545663
Query: 402 tcgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctg 461
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct: 30545662 gcgtcgctgggcccgcccacgacggcgcccaccagcaggttggggttgggcgccgcgctg 30545603
Query: 462 gtgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggc 521
| |||||| ||||||||| ||||||| |||||||||||||||||||| || ||||||||
Sbjct: 30545602 gcgtagtaagcggcgccgcccttgcacccgatccgcgccgggtgcgcggcgacggacggg 30545543
Query: 522 agcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtac 581
|| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 30545542 agggagctcccgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgtac 30545483
Query: 582 gacatccgcagcgggttgtcgcccagtatgtagtccacctgccgcttggccacgcggcgg 641
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 30545482 gacatccgcagcgggttgtcgccgaggatgtagtccacctggcgcttggccacgcggcgg 30545423
Query: 642 agctgcaccggcgacgccga--cg-acgagccgcacgagacgcgcccgccggcgtggctc 698
|||||| |||||||||||| || || ||||||||| || ||| ||||||||||||||
Sbjct: 30545422 agctgcgtcggcgacgccgagccgcccgcgccgcacgacacccgcgcgccggcgtggctc 30545363
Query: 699 aggtagttggagtaggccagcaggaggaacgacagctgcgtcacgtgctgcatgttgctg 758
||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||
Sbjct: 30545362 aggtagttggagtaggcgagcagcaggaacgacagcgatgtcacgtgctgcatgttgctg 30545303
Query: 759 ctcccgaccttgaacagcagcccgcctg 786
| ||| ||||||||||||||||| ||||
Sbjct: 30545302 cccccaaccttgaacagcagcccacctg 30545275
Score = 343 bits (173), Expect = 1e-091
Identities = 236/258 (91%), Gaps = 2/258 (0%)
Strand = Plus / Minus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30543605 ccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 30543546
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
Sbjct: 30543545 actcgctggcgccgagcaccacctcgttcttcttgatgtactcgcggtactcgcggcggc 30543486
Query: 1018 gcgtcgccttgtgcagccacgccnnnnnnnncacagcagctcgtcctggtatccggagta 1077
||| ||||||||||||||||||| || ||||||||||||| ||| |||||| |
Sbjct: 30543485 gcgacgccttgtgcagccacgcc--gcgccccagagcagctcgtccttgtacccggagaa 30543428
Query: 1078 gtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccccggtactt 1137
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 30543427 gtcgcagtagcaggggcacaccgcgtcgtggaggctgctgctgtaggggccccggtactt 30543368
Query: 1138 gtccgcgaactcgaacac 1155
||||||||||||||||||
Sbjct: 30543367 gtccgcgaactcgaacac 30543350
Score = 202 bits (102), Expect = 3e-049
Identities = 114/118 (96%)
Strand = Plus / Minus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 30545182 cctggggagtactggatctgggggtgattagagatgcccgggaggaggctgcacatgaag 30545123
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 30545122 ttgtcggcgttgacacggaacgactggaagtactcgtccttccccatcagaacctcct 30545065
Score = 127 bits (64), Expect = 2e-026
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 1154 acggcgacggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 1213
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30543266 acggcgatggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 30543207
Query: 1214 atggagcc 1221
||||||||
Sbjct: 30543206 atggagcc 30543199
Score = 56.0 bits (28), Expect = 5e-005
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 547 gccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgccca 606
|||||||| ||| ||| ||| ||||||||||||||||||||| | ||| || | || |
Sbjct: 1259224 gccgcgggtacctcgccccgaaccccaccatgtacgacatccccgccggattcgccccga 1259165
Query: 607 gtatgtagtccacctg 622
||||||||||||||||
Sbjct: 1259164 gtatgtagtccacctg 1259149
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1183 ggagtaggcggggtcggcgtcgcggaagacgatggag 1219
|||||||| |||||||| | |||||||||||||||||
Sbjct: 1257236 ggagtaggaggggtcggagacgcggaagacgatggag 1257200
>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0624H09
Length = 158719
Score = 389 bits (196), Expect = e-105
Identities = 298/332 (89%)
Strand = Plus / Plus
Query: 292 ggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
||||||| || ||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 82660 ggttggggtgggccgagaagtaggcgaggaggccgaggagcggggcgttgatgtacgtgg 82719
Query: 352 tgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagtcgtcggtgg 411
||||||||||||||||||||||||| |||||||||||||| |||||| | || | |||
Sbjct: 82720 tgggctcggactgctggaacacggcccgcgcgtcggggaacgcgtcgctggtgttgctgg 82779
Query: 412 gcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctggtgtagtagg 471
|||||||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct: 82780 gcccgcccaccacggcgcccaccaggaggttcgggttgggcgccgcgctggcgtagtagg 82839
Query: 472 cggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggcagcgagctgg 531
|| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 82840 tcgccccggccttgcacccgatctgcgccgggtgcgccgccaccgacggcagcgagctcc 82899
Query: 532 cgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgca 591
| ||||||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 82900 cccggtggtggatccgcagcgggtacctcgacccgtaacccaccatgtacgacatccgca 82959
Query: 592 gcgggttgtcgcccagtatgtagtccacctgc 623
|||||||||||||||| |||||||||||||||
Sbjct: 82960 gcgggttgtcgcccaggatgtagtccacctgc 82991
Score = 236 bits (119), Expect = 2e-059
Identities = 137/143 (95%)
Strand = Plus / Plus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86426 ccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 86485
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||
Sbjct: 86486 cctcgctggcgccgagcaccacctcgttccgcttgatgtagtcgcggtactcccggcgcc 86545
Query: 1018 gcgtcgccttgtgcagccacgcc 1040
||| |||||||||||||||||||
Sbjct: 86546 gcgacgccttgtgcagccacgcc 86568
Score = 170 bits (86), Expect = 1e-039
Identities = 110/118 (93%)
Strand = Plus / Plus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 83474 cctggggagtactggatctggggatgattagagatgccggggaggagggtgcagatgaag 83533
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 83534 ttgtcggcgttcacgcggaacgactggaaatactcgtccttccccatcaggacctcct 83591
Score = 139 bits (70), Expect = 4e-030
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1070 ccggagtagtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccc 1129
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 86681 ccggagtagtcgcagtagcaggggcacacggccgcgtgcaggctgctgctgtatgggccc 86740
Query: 1130 cggtacttgtccgcgaactcgaacac 1155
| ||||||||||||||||||||||||
Sbjct: 86741 ctgtacttgtccgcgaactcgaacac 86766
Score = 113 bits (57), Expect = 2e-022
Identities = 141/169 (83%)
Strand = Plus / Plus
Query: 618 acctgccgcttggccacgcggcggagctgcaccggcgacgccgacgacgagccgcacgag 677
||||| |||||||| ||||| |||||||| || || || || || || | |||||| | |
Sbjct: 83219 acctggcgcttggcgacgcgtcggagctggacgggggaggcggaggaggtgccgcagggg 83278
Query: 678 acgcgcccgccggcgtggctcaggtagttggagtaggccagcaggaggaacgacagctgc 737
||||| || ||||||||| || ||||||||||| || || ||||||||||||||| |
Sbjct: 83279 acgcggacgttggcgtggctgagatagttggagtatgcgaggaggaggaacgacagcgac 83338
Query: 738 gtcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcctg 786
||||||||||||||||||||| | || ||||||||||||||||| ||||
Sbjct: 83339 gtcacgtgctgcatgttgctgttgcccaccttgaacagcagcccacctg 83387
Score = 99.6 bits (50), Expect = 3e-018
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 1162 ggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacgatggag 1219
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 86950 ggcgcggtcgaggaggcggttggagtagtcggggtcggcgtcgcggaagacgatggag 87007
>gb|AACV01013457.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013457, whole
genome shotgun sequence
Length = 13333
Score = 389 bits (196), Expect = e-105
Identities = 298/332 (89%)
Strand = Plus / Plus
Query: 292 ggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
||||||| || ||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 2873 ggttggggtgggccgagaagtaggcgaggaggccgaggagcggggcgttgatgtacgtgg 2932
Query: 352 tgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagtcgtcggtgg 411
||||||||||||||||||||||||| |||||||||||||| |||||| | || | |||
Sbjct: 2933 tgggctcggactgctggaacacggcccgcgcgtcggggaacgcgtcgctggtgttgctgg 2992
Query: 412 gcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctggtgtagtagg 471
|||||||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct: 2993 gcccgcccaccacggcgcccaccaggaggttcgggttgggcgccgcgctggcgtagtagg 3052
Query: 472 cggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggcagcgagctgg 531
|| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 3053 tcgccccggccttgcacccgatctgcgccgggtgcgccgccaccgacggcagcgagctcc 3112
Query: 532 cgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgca 591
| ||||||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 3113 cccggtggtggatccgcagcgggtacctcgacccgtaacccaccatgtacgacatccgca 3172
Query: 592 gcgggttgtcgcccagtatgtagtccacctgc 623
|||||||||||||||| |||||||||||||||
Sbjct: 3173 gcgggttgtcgcccaggatgtagtccacctgc 3204
Score = 236 bits (119), Expect = 2e-059
Identities = 137/143 (95%)
Strand = Plus / Plus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6639 ccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 6698
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||
Sbjct: 6699 cctcgctggcgccgagcaccacctcgttccgcttgatgtagtcgcggtactcccggcgcc 6758
Query: 1018 gcgtcgccttgtgcagccacgcc 1040
||| |||||||||||||||||||
Sbjct: 6759 gcgacgccttgtgcagccacgcc 6781
Score = 170 bits (86), Expect = 1e-039
Identities = 110/118 (93%)
Strand = Plus / Plus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 3687 cctggggagtactggatctggggatgattagagatgccggggaggagggtgcagatgaag 3746
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 3747 ttgtcggcgttcacgcggaacgactggaaatactcgtccttccccatcaggacctcct 3804
Score = 139 bits (70), Expect = 4e-030
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1070 ccggagtagtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccc 1129
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 6894 ccggagtagtcgcagtagcaggggcacacggccgcgtgcaggctgctgctgtatgggccc 6953
Query: 1130 cggtacttgtccgcgaactcgaacac 1155
| ||||||||||||||||||||||||
Sbjct: 6954 ctgtacttgtccgcgaactcgaacac 6979
Score = 113 bits (57), Expect = 2e-022
Identities = 141/169 (83%)
Strand = Plus / Plus
Query: 618 acctgccgcttggccacgcggcggagctgcaccggcgacgccgacgacgagccgcacgag 677
||||| |||||||| ||||| |||||||| || || || || || || | |||||| | |
Sbjct: 3432 acctggcgcttggcgacgcgtcggagctggacgggggaggcggaggaggtgccgcagggg 3491
Query: 678 acgcgcccgccggcgtggctcaggtagttggagtaggccagcaggaggaacgacagctgc 737
||||| || ||||||||| || ||||||||||| || || ||||||||||||||| |
Sbjct: 3492 acgcggacgttggcgtggctgagatagttggagtatgcgaggaggaggaacgacagcgac 3551
Query: 738 gtcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcctg 786
||||||||||||||||||||| | || ||||||||||||||||| ||||
Sbjct: 3552 gtcacgtgctgcatgttgctgttgcccaccttgaacagcagcccacctg 3600
Score = 99.6 bits (50), Expect = 3e-018
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 1162 ggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacgatggag 1219
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 7163 ggcgcggtcgaggaggcggttggagtagtcggggtcggcgtcgcggaagacgatggag 7220
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 389 bits (196), Expect = e-105
Identities = 298/332 (89%)
Strand = Plus / Plus
Query: 292 ggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
||||||| || ||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 3881877 ggttggggtgggccgagaagtaggcgaggaggccgaggagcggggcgttgatgtacgtgg 3881936
Query: 352 tgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagtcgtcggtgg 411
||||||||||||||||||||||||| |||||||||||||| |||||| | || | |||
Sbjct: 3881937 tgggctcggactgctggaacacggcccgcgcgtcggggaacgcgtcgctggtgttgctgg 3881996
Query: 412 gcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctggtgtagtagg 471
|||||||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct: 3881997 gcccgcccaccacggcgcccaccaggaggttcgggttgggcgccgcgctggcgtagtagg 3882056
Query: 472 cggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggcagcgagctgg 531
|| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 3882057 tcgccccggccttgcacccgatctgcgccgggtgcgccgccaccgacggcagcgagctcc 3882116
Query: 532 cgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgca 591
| ||||||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 3882117 cccggtggtggatccgcagcgggtacctcgacccgtaacccaccatgtacgacatccgca 3882176
Query: 592 gcgggttgtcgcccagtatgtagtccacctgc 623
|||||||||||||||| |||||||||||||||
Sbjct: 3882177 gcgggttgtcgcccaggatgtagtccacctgc 3882208
Score = 236 bits (119), Expect = 2e-059
Identities = 137/143 (95%)
Strand = Plus / Plus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3885643 ccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 3885702
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||
Sbjct: 3885703 cctcgctggcgccgagcaccacctcgttccgcttgatgtagtcgcggtactcccggcgcc 3885762
Query: 1018 gcgtcgccttgtgcagccacgcc 1040
||| |||||||||||||||||||
Sbjct: 3885763 gcgacgccttgtgcagccacgcc 3885785
Score = 170 bits (86), Expect = 1e-039
Identities = 110/118 (93%)
Strand = Plus / Plus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 3882691 cctggggagtactggatctggggatgattagagatgccggggaggagggtgcagatgaag 3882750
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 3882751 ttgtcggcgttcacgcggaacgactggaaatactcgtccttccccatcaggacctcct 3882808
Score = 139 bits (70), Expect = 4e-030
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1070 ccggagtagtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccc 1129
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 3885898 ccggagtagtcgcagtagcaggggcacacggccgcgtgcaggctgctgctgtatgggccc 3885957
Query: 1130 cggtacttgtccgcgaactcgaacac 1155
| ||||||||||||||||||||||||
Sbjct: 3885958 ctgtacttgtccgcgaactcgaacac 3885983
Score = 113 bits (57), Expect = 2e-022
Identities = 141/169 (83%)
Strand = Plus / Plus
Query: 618 acctgccgcttggccacgcggcggagctgcaccggcgacgccgacgacgagccgcacgag 677
||||| |||||||| ||||| |||||||| || || || || || || | |||||| | |
Sbjct: 3882436 acctggcgcttggcgacgcgtcggagctggacgggggaggcggaggaggtgccgcagggg 3882495
Query: 678 acgcgcccgccggcgtggctcaggtagttggagtaggccagcaggaggaacgacagctgc 737
||||| || ||||||||| || ||||||||||| || || ||||||||||||||| |
Sbjct: 3882496 acgcggacgttggcgtggctgagatagttggagtatgcgaggaggaggaacgacagcgac 3882555
Query: 738 gtcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcctg 786
||||||||||||||||||||| | || ||||||||||||||||| ||||
Sbjct: 3882556 gtcacgtgctgcatgttgctgttgcccaccttgaacagcagcccacctg 3882604
Score = 99.6 bits (50), Expect = 3e-018
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 1162 ggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacgatggag 1219
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 3886167 ggcgcggtcgaggaggcggttggagtagtcggggtcggcgtcgcggaagacgatggag 3886224
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 389 bits (196), Expect = e-105
Identities = 298/332 (89%)
Strand = Plus / Plus
Query: 292 ggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
||||||| || ||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 8170328 ggttggggtgggccgagaagtaggcgaggaggccgaggagcggggcgttgatgtacgtgg 8170387
Query: 352 tgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagtcgtcggtgg 411
||||||||||||||||||||||||| |||||||||||||| |||||| | || | |||
Sbjct: 8170388 tgggctcggactgctggaacacggcccgcgcgtcggggaacgcgtcgctggtgttgctgg 8170447
Query: 412 gcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctggtgtagtagg 471
|||||||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct: 8170448 gcccgcccaccacggcgcccaccaggaggttcgggttgggcgccgcgctggcgtagtagg 8170507
Query: 472 cggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggcagcgagctgg 531
|| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 8170508 tcgccccggccttgcacccgatctgcgccgggtgcgccgccaccgacggcagcgagctcc 8170567
Query: 532 cgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgca 591
| ||||||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 8170568 cccggtggtggatccgcagcgggtacctcgacccgtaacccaccatgtacgacatccgca 8170627
Query: 592 gcgggttgtcgcccagtatgtagtccacctgc 623
|||||||||||||||| |||||||||||||||
Sbjct: 8170628 gcgggttgtcgcccaggatgtagtccacctgc 8170659
Score = 236 bits (119), Expect = 2e-059
Identities = 137/143 (95%)
Strand = Plus / Plus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8174094 ccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 8174153
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||
Sbjct: 8174154 cctcgctggcgccgagcaccacctcgttccgcttgatgtagtcgcggtactcccggcgcc 8174213
Query: 1018 gcgtcgccttgtgcagccacgcc 1040
||| |||||||||||||||||||
Sbjct: 8174214 gcgacgccttgtgcagccacgcc 8174236
Score = 170 bits (86), Expect = 1e-039
Identities = 110/118 (93%)
Strand = Plus / Plus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 8171142 cctggggagtactggatctggggatgattagagatgccggggaggagggtgcagatgaag 8171201
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 8171202 ttgtcggcgttcacgcggaacgactggaaatactcgtccttccccatcaggacctcct 8171259
Score = 139 bits (70), Expect = 4e-030
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1070 ccggagtagtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccc 1129
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 8174349 ccggagtagtcgcagtagcaggggcacacggccgcgtgcaggctgctgctgtatgggccc 8174408
Query: 1130 cggtacttgtccgcgaactcgaacac 1155
| ||||||||||||||||||||||||
Sbjct: 8174409 ctgtacttgtccgcgaactcgaacac 8174434
Score = 113 bits (57), Expect = 2e-022
Identities = 141/169 (83%)
Strand = Plus / Plus
Query: 618 acctgccgcttggccacgcggcggagctgcaccggcgacgccgacgacgagccgcacgag 677
||||| |||||||| ||||| |||||||| || || || || || || | |||||| | |
Sbjct: 8170887 acctggcgcttggcgacgcgtcggagctggacgggggaggcggaggaggtgccgcagggg 8170946
Query: 678 acgcgcccgccggcgtggctcaggtagttggagtaggccagcaggaggaacgacagctgc 737
||||| || ||||||||| || ||||||||||| || || ||||||||||||||| |
Sbjct: 8170947 acgcggacgttggcgtggctgagatagttggagtatgcgaggaggaggaacgacagcgac 8171006
Query: 738 gtcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcctg 786
||||||||||||||||||||| | || ||||||||||||||||| ||||
Sbjct: 8171007 gtcacgtgctgcatgttgctgttgcccaccttgaacagcagcccacctg 8171055
Score = 99.6 bits (50), Expect = 3e-018
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 1162 ggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacgatggag 1219
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 8174618 ggcgcggtcgaggaggcggttggagtagtcggggtcggcgtcgcggaagacgatggag 8174675
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 389 bits (196), Expect = e-105
Identities = 298/332 (89%)
Strand = Plus / Plus
Query: 292 ggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
||||||| || ||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 8170328 ggttggggtgggccgagaagtaggcgaggaggccgaggagcggggcgttgatgtacgtgg 8170387
Query: 352 tgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagtcgtcggtgg 411
||||||||||||||||||||||||| |||||||||||||| |||||| | || | |||
Sbjct: 8170388 tgggctcggactgctggaacacggcccgcgcgtcggggaacgcgtcgctggtgttgctgg 8170447
Query: 412 gcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctggtgtagtagg 471
|||||||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct: 8170448 gcccgcccaccacggcgcccaccaggaggttcgggttgggcgccgcgctggcgtagtagg 8170507
Query: 472 cggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggcagcgagctgg 531
|| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 8170508 tcgccccggccttgcacccgatctgcgccgggtgcgccgccaccgacggcagcgagctcc 8170567
Query: 532 cgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgca 591
| ||||||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 8170568 cccggtggtggatccgcagcgggtacctcgacccgtaacccaccatgtacgacatccgca 8170627
Query: 592 gcgggttgtcgcccagtatgtagtccacctgc 623
|||||||||||||||| |||||||||||||||
Sbjct: 8170628 gcgggttgtcgcccaggatgtagtccacctgc 8170659
Score = 236 bits (119), Expect = 2e-059
Identities = 137/143 (95%)
Strand = Plus / Plus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8174094 ccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 8174153
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||
Sbjct: 8174154 cctcgctggcgccgagcaccacctcgttccgcttgatgtagtcgcggtactcccggcgcc 8174213
Query: 1018 gcgtcgccttgtgcagccacgcc 1040
||| |||||||||||||||||||
Sbjct: 8174214 gcgacgccttgtgcagccacgcc 8174236
Score = 170 bits (86), Expect = 1e-039
Identities = 110/118 (93%)
Strand = Plus / Plus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 8171142 cctggggagtactggatctggggatgattagagatgccggggaggagggtgcagatgaag 8171201
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 8171202 ttgtcggcgttcacgcggaacgactggaaatactcgtccttccccatcaggacctcct 8171259
Score = 139 bits (70), Expect = 4e-030
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1070 ccggagtagtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccc 1129
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 8174349 ccggagtagtcgcagtagcaggggcacacggccgcgtgcaggctgctgctgtatgggccc 8174408
Query: 1130 cggtacttgtccgcgaactcgaacac 1155
| ||||||||||||||||||||||||
Sbjct: 8174409 ctgtacttgtccgcgaactcgaacac 8174434
Score = 113 bits (57), Expect = 2e-022
Identities = 141/169 (83%)
Strand = Plus / Plus
Query: 618 acctgccgcttggccacgcggcggagctgcaccggcgacgccgacgacgagccgcacgag 677
||||| |||||||| ||||| |||||||| || || || || || || | |||||| | |
Sbjct: 8170887 acctggcgcttggcgacgcgtcggagctggacgggggaggcggaggaggtgccgcagggg 8170946
Query: 678 acgcgcccgccggcgtggctcaggtagttggagtaggccagcaggaggaacgacagctgc 737
||||| || ||||||||| || ||||||||||| || || ||||||||||||||| |
Sbjct: 8170947 acgcggacgttggcgtggctgagatagttggagtatgcgaggaggaggaacgacagcgac 8171006
Query: 738 gtcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcctg 786
||||||||||||||||||||| | || ||||||||||||||||| ||||
Sbjct: 8171007 gtcacgtgctgcatgttgctgttgcccaccttgaacagcagcccacctg 8171055
Score = 99.6 bits (50), Expect = 3e-018
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 1162 ggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacgatggag 1219
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 8174618 ggcgcggtcgaggaggcggttggagtagtcggggtcggcgtcgcggaagacgatggag 8174675
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 389 bits (196), Expect = e-105
Identities = 298/332 (89%)
Strand = Plus / Plus
Query: 292 ggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
||||||| || ||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 8190297 ggttggggtgggccgagaagtaggcgaggaggccgaggagcggggcgttgatgtacgtgg 8190356
Query: 352 tgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagtcgtcggtgg 411
||||||||||||||||||||||||| |||||||||||||| |||||| | || | |||
Sbjct: 8190357 tgggctcggactgctggaacacggcccgcgcgtcggggaacgcgtcgctggtgttgctgg 8190416
Query: 412 gcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctggtgtagtagg 471
|||||||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct: 8190417 gcccgcccaccacggcgcccaccaggaggttcgggttgggcgccgcgctggcgtagtagg 8190476
Query: 472 cggcgccggccttgcagccgatccgcgccgggtgcgccgccacggacggcagcgagctgg 531
|| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 8190477 tcgccccggccttgcacccgatctgcgccgggtgcgccgccaccgacggcagcgagctcc 8190536
Query: 532 cgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgca 591
| ||||||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 8190537 cccggtggtggatccgcagcgggtacctcgacccgtaacccaccatgtacgacatccgca 8190596
Query: 592 gcgggttgtcgcccagtatgtagtccacctgc 623
|||||||||||||||| |||||||||||||||
Sbjct: 8190597 gcgggttgtcgcccaggatgtagtccacctgc 8190628
Score = 236 bits (119), Expect = 2e-059
Identities = 137/143 (95%)
Strand = Plus / Plus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8194063 ccttggagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 8194122
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||
Sbjct: 8194123 cctcgctggcgccgagcaccacctcgttccgcttgatgtagtcgcggtactcccggcgcc 8194182
Query: 1018 gcgtcgccttgtgcagccacgcc 1040
||| |||||||||||||||||||
Sbjct: 8194183 gcgacgccttgtgcagccacgcc 8194205
Score = 170 bits (86), Expect = 1e-039
Identities = 110/118 (93%)
Strand = Plus / Plus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 8191111 cctggggagtactggatctggggatgattagagatgccggggaggagggtgcagatgaag 8191170
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 8191171 ttgtcggcgttcacgcggaacgactggaaatactcgtccttccccatcaggacctcct 8191228
Score = 139 bits (70), Expect = 4e-030
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1070 ccggagtagtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccc 1129
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 8194318 ccggagtagtcgcagtagcaggggcacacggccgcgtgcaggctgctgctgtatgggccc 8194377
Query: 1130 cggtacttgtccgcgaactcgaacac 1155
| ||||||||||||||||||||||||
Sbjct: 8194378 ctgtacttgtccgcgaactcgaacac 8194403
Score = 113 bits (57), Expect = 2e-022
Identities = 141/169 (83%)
Strand = Plus / Plus
Query: 618 acctgccgcttggccacgcggcggagctgcaccggcgacgccgacgacgagccgcacgag 677
||||| |||||||| ||||| |||||||| || || || || || || | |||||| | |
Sbjct: 8190856 acctggcgcttggcgacgcgtcggagctggacgggggaggcggaggaggtgccgcagggg 8190915
Query: 678 acgcgcccgccggcgtggctcaggtagttggagtaggccagcaggaggaacgacagctgc 737
||||| || ||||||||| || ||||||||||| || || ||||||||||||||| |
Sbjct: 8190916 acgcggacgttggcgtggctgagatagttggagtatgcgaggaggaggaacgacagcgac 8190975
Query: 738 gtcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcctg 786
||||||||||||||||||||| | || ||||||||||||||||| ||||
Sbjct: 8190976 gtcacgtgctgcatgttgctgttgcccaccttgaacagcagcccacctg 8191024
Score = 99.6 bits (50), Expect = 3e-018
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 1162 ggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacgatggag 1219
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 8194587 ggcgcggtcgaggaggcggttggagtagtcggggtcggcgtcgcggaagacgatggag 8194644
>gb|C97685.1|C97685 C97685 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61433_2A, mRNA sequence
Length = 354
Score = 157 bits (79), Expect = 2e-035
Identities = 100/107 (93%)
Strand = Plus / Minus
Query: 292 ggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
||||||| || ||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 118 ggttggggtgggccgagaagtaggcgaggaggccgaggagcggggcgttgatgtacgtgg 59
Query: 352 tgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcg 398
||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 58 tgggctcggactgctggaacacggcccgcgcgtcggggaacgcgtcg 12
>dbj|AK106887.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-F12, full
insert sequence
Length = 1921
Score = 109 bits (55), Expect = 4e-021
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 1404 gcagccgatcctggcggggtgcgccgccaccgacggcagcgacgacgcgcggtggtggat 1345
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| ||||||| || ||||||||||| |||||||||||||||| || ||||||| ||
Sbjct: 1344 cctccgcgggtacttggcgccgtacccgaccatgtacgacatccccatcgggttgctccc 1285
Query: 605 cagtatgtagtccacctgc 623
||| | |||||||||||||
Sbjct: 1284 cagcaggtagtccacctgc 1266
Score = 46.1 bits (23), Expect = 0.045
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 921 ccggcgtgcttgttgtcccagccgaac 947
|||||||||||||||||||| ||||||
Sbjct: 971 ccggcgtgcttgttgtcccacccgaac 945
Score = 46.1 bits (23), Expect = 0.045
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1049 cacagcagctcgtcctggtatccggagtagtcgcagtag 1087
||||||||||| |||||||| ||||||||| |||||||
Sbjct: 845 cacagcagctcatcctggtacccggagtaggagcagtag 807
Score = 44.1 bits (22), Expect = 0.18
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 329 gagcggcgcgttgatgtacgtggtgggctcggactgct 366
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 1557 gagcggcgcgttgatgtaggtggccggctcggagtgct 1520
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1011A07
Length = 150590
Score = 109 bits (55), Expect = 4e-021
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 81095 gcagccgatcctggcggggtgcgccgccaccgacggcagcgacgacgcgcggtggtggat 81036
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| ||||||| || ||||||||||| |||||||||||||||| || ||||||| ||
Sbjct: 81035 cctccgcgggtacttggcgccgtacccgaccatgtacgacatccccatcgggttgctccc 80976
Query: 605 cagtatgtagtccacctgc 623
||| | |||||||||||||
Sbjct: 80975 cagcaggtagtccacctgc 80957
Score = 46.1 bits (23), Expect = 0.045
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 921 ccggcgtgcttgttgtcccagccgaac 947
|||||||||||||||||||| ||||||
Sbjct: 80662 ccggcgtgcttgttgtcccacccgaac 80636
Score = 44.1 bits (22), Expect = 0.18
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 329 gagcggcgcgttgatgtacgtggtgggctcggactgct 366
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 81248 gagcggcgcgttgatgtaggtggccggctcggagtgct 81211
>gb|AACV01000869.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000869, whole
genome shotgun sequence
Length = 17382
Score = 109 bits (55), Expect = 4e-021
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 3097 gcagccgatcctggcggggtgcgccgccaccgacggcagcgacgacgcgcggtggtggat 3156
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| ||||||| || ||||||||||| |||||||||||||||| || ||||||| ||
Sbjct: 3157 cctccgcgggtacttggcgccgtacccgaccatgtacgacatccccatcgggttgctccc 3216
Query: 605 cagtatgtagtccacctgc 623
||| | |||||||||||||
Sbjct: 3217 cagcaggtagtccacctgc 3235
Score = 46.1 bits (23), Expect = 0.045
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 921 ccggcgtgcttgttgtcccagccgaac 947
|||||||||||||||||||| ||||||
Sbjct: 3530 ccggcgtgcttgttgtcccacccgaac 3556
Score = 44.1 bits (22), Expect = 0.18
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 329 gagcggcgcgttgatgtacgtggtgggctcggactgct 366
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 2944 gagcggcgcgttgatgtaggtggccggctcggagtgct 2981
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 109 bits (55), Expect = 4e-021
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 11739709 gcagccgatcctggcggggtgcgccgccaccgacggcagcgacgacgcgcggtggtggat 11739650
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| ||||||| || ||||||||||| |||||||||||||||| || ||||||| ||
Sbjct: 11739649 cctccgcgggtacttggcgccgtacccgaccatgtacgacatccccatcgggttgctccc 11739590
Query: 605 cagtatgtagtccacctgc 623
||| | |||||||||||||
Sbjct: 11739589 cagcaggtagtccacctgc 11739571
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 315 gcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
||||||| ||||||||||||||||||| |||| ||||
Sbjct: 6539153 gcgaggacgcccatgagcggcgcgttgttgtaggtgg 6539189
Score = 46.1 bits (23), Expect = 0.045
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 921 ccggcgtgcttgttgtcccagccgaac 947
|||||||||||||||||||| ||||||
Sbjct: 11739276 ccggcgtgcttgttgtcccacccgaac 11739250
Score = 44.1 bits (22), Expect = 0.18
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 329 gagcggcgcgttgatgtacgtggtgggctcggactgct 366
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 11739862 gagcggcgcgttgatgtaggtggccggctcggagtgct 11739825
Score = 44.1 bits (22), Expect = 0.18
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 314 ggcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
|||||||| |||||||||||| |||||| |||| ||||
Sbjct: 6562636 ggcgaggatgcccatgagcggggcgttgttgtaggtgg 6562673
>ref|NM_183708.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1500
Score = 109 bits (55), Expect = 4e-021
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 1302 gcagccgatcctggcggggtgcgccgccaccgacggcagcgacgacgcgcggtggtggat 1243
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| ||||||| || ||||||||||| |||||||||||||||| || ||||||| ||
Sbjct: 1242 cctccgcgggtacttggcgccgtacccgaccatgtacgacatccccatcgggttgctccc 1183
Query: 605 cagtatgtagtccacctgc 623
||| | |||||||||||||
Sbjct: 1182 cagcaggtagtccacctgc 1164
Score = 46.1 bits (23), Expect = 0.045
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 921 ccggcgtgcttgttgtcccagccgaac 947
|||||||||||||||||||| ||||||
Sbjct: 869 ccggcgtgcttgttgtcccacccgaac 843
Score = 46.1 bits (23), Expect = 0.045
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1049 cacagcagctcgtcctggtatccggagtagtcgcagtag 1087
||||||||||| |||||||| ||||||||| |||||||
Sbjct: 743 cacagcagctcatcctggtacccggagtaggagcagtag 705
Score = 44.1 bits (22), Expect = 0.18
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 329 gagcggcgcgttgatgtacgtggtgggctcggactgct 366
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 1455 gagcggcgcgttgatgtaggtggccggctcggagtgct 1418
>ref|NT_079961.2| Oryza sativa (japonica cultivar-group)
Length = 3480660
Score = 109 bits (55), Expect = 4e-021
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 248934 gcagccgatcctggcggggtgcgccgccaccgacggcagcgacgacgcgcggtggtggat 248875
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| ||||||| || ||||||||||| |||||||||||||||| || ||||||| ||
Sbjct: 248874 cctccgcgggtacttggcgccgtacccgaccatgtacgacatccccatcgggttgctccc 248815
Query: 605 cagtatgtagtccacctgc 623
||| | |||||||||||||
Sbjct: 248814 cagcaggtagtccacctgc 248796
Score = 46.1 bits (23), Expect = 0.045
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 921 ccggcgtgcttgttgtcccagccgaac 947
|||||||||||||||||||| ||||||
Sbjct: 248501 ccggcgtgcttgttgtcccacccgaac 248475
Score = 44.1 bits (22), Expect = 0.18
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 329 gagcggcgcgttgatgtacgtggtgggctcggactgct 366
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 249087 gagcggcgcgttgatgtaggtggccggctcggagtgct 249050
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002
genomic scaffold, whole genome shotgun sequence
Length = 5008528
Score = 109 bits (55), Expect = 4e-021
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 195210 gcagccgatcctggcggggtgcgccgccaccgacggcagcgacgacgcgcggtggtggat 195151
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| ||||||| || ||||||||||| |||||||||||||||| || ||||||| ||
Sbjct: 195150 cctccgcgggtacttggcgccgtacccgaccatgtacgacatccccatcgggttgctccc 195091
Query: 605 cagtatgtagtccacctgc 623
||| | |||||||||||||
Sbjct: 195090 cagcaggtagtccacctgc 195072
Score = 46.1 bits (23), Expect = 0.045
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 921 ccggcgtgcttgttgtcccagccgaac 947
|||||||||||||||||||| ||||||
Sbjct: 194777 ccggcgtgcttgttgtcccacccgaac 194751
Score = 44.1 bits (22), Expect = 0.18
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 329 gagcggcgcgttgatgtacgtggtgggctcggactgct 366
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 195363 gagcggcgcgttgatgtaggtggccggctcggagtgct 195326
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 109 bits (55), Expect = 4e-021
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 11811705 gcagccgatcctggcggggtgcgccgccaccgacggcagcgacgacgcgcggtggtggat 11811646
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| ||||||| || ||||||||||| |||||||||||||||| || ||||||| ||
Sbjct: 11811645 cctccgcgggtacttggcgccgtacccgaccatgtacgacatccccatcgggttgctccc 11811586
Query: 605 cagtatgtagtccacctgc 623
||| | |||||||||||||
Sbjct: 11811585 cagcaggtagtccacctgc 11811567
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 315 gcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
||||||| ||||||||||||||||||| |||| ||||
Sbjct: 6614230 gcgaggacgcccatgagcggcgcgttgttgtaggtgg 6614266
Score = 46.1 bits (23), Expect = 0.045
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 921 ccggcgtgcttgttgtcccagccgaac 947
|||||||||||||||||||| ||||||
Sbjct: 11811272 ccggcgtgcttgttgtcccacccgaac 11811246
Score = 44.1 bits (22), Expect = 0.18
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 329 gagcggcgcgttgatgtacgtggtgggctcggactgct 366
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 11811858 gagcggcgcgttgatgtaggtggccggctcggagtgct 11811821
Score = 44.1 bits (22), Expect = 0.18
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 314 ggcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
|||||||| |||||||||||| |||||| |||| ||||
Sbjct: 6630961 ggcgaggatgcccatgagcggggcgttgttgtaggtgg 6630998
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 109 bits (55), Expect = 4e-021
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 11741927 gcagccgatcctggcggggtgcgccgccaccgacggcagcgacgacgcgcggtggtggat 11741868
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| ||||||| || ||||||||||| |||||||||||||||| || ||||||| ||
Sbjct: 11741867 cctccgcgggtacttggcgccgtacccgaccatgtacgacatccccatcgggttgctccc 11741808
Query: 605 cagtatgtagtccacctgc 623
||| | |||||||||||||
Sbjct: 11741807 cagcaggtagtccacctgc 11741789
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 315 gcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
||||||| ||||||||||||||||||| |||| ||||
Sbjct: 6541371 gcgaggacgcccatgagcggcgcgttgttgtaggtgg 6541407
Score = 46.1 bits (23), Expect = 0.045
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 921 ccggcgtgcttgttgtcccagccgaac 947
|||||||||||||||||||| ||||||
Sbjct: 11741494 ccggcgtgcttgttgtcccacccgaac 11741468
Score = 44.1 bits (22), Expect = 0.18
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 329 gagcggcgcgttgatgtacgtggtgggctcggactgct 366
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 11742080 gagcggcgcgttgatgtaggtggccggctcggagtgct 11742043
Score = 44.1 bits (22), Expect = 0.18
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 314 ggcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
|||||||| |||||||||||| |||||| |||| ||||
Sbjct: 6564854 ggcgaggatgcccatgagcggggcgttgttgtaggtgg 6564891
>gb|AACV01015966.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015966, whole
genome shotgun sequence
Length = 38561
Score = 107 bits (54), Expect = 1e-020
Identities = 117/138 (84%)
Strand = Plus / Plus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||| ||||||||| ||||||||| ||||||| ||| | | |||||| ||
Sbjct: 20087 gcagccgatgtgcgccgggtacgccgccaccgacggcatcgacgcccccctgtggtgtat 20146
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| | ||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||
Sbjct: 20147 cctctgcgggaaccgcgcgccgtagcccaccatgtacgacatcccctgcgggttcgcgcc 20206
Query: 605 cagtatgtagtccacctg 622
||| ||||||||||||||
Sbjct: 20207 caggatgtagtccacctg 20224
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1049 cacagcagctcgtcctggtatccggagtag 1078
||||| |||||||||||||| |||||||||
Sbjct: 21401 cacaggagctcgtcctggtagccggagtag 21430
>ref|XM_472631.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1503
Score = 107 bits (54), Expect = 1e-020
Identities = 117/138 (84%)
Strand = Plus / Minus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||| ||||||||| ||||||||| ||||||| ||| | | |||||| ||
Sbjct: 1305 gcagccgatgtgcgccgggtacgccgccaccgacggcatcgacgcccccctgtggtgtat 1246
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| | ||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||
Sbjct: 1245 cctctgcgggaaccgcgcgccgtagcccaccatgtacgacatcccctgcgggttcgcgcc 1186
Query: 605 cagtatgtagtccacctg 622
||| ||||||||||||||
Sbjct: 1185 caggatgtagtccacctg 1168
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1049 cacagcagctcgtcctggtatccggagtag 1078
||||| |||||||||||||| |||||||||
Sbjct: 758 cacaggagctcgtcctggtagccggagtag 729
>ref|NT_079862.2| Oryza sativa (japonica cultivar-group)
Length = 193790
Score = 107 bits (54), Expect = 1e-020
Identities = 117/138 (84%)
Strand = Plus / Plus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||| ||||||||| ||||||||| ||||||| ||| | | |||||| ||
Sbjct: 34140 gcagccgatgtgcgccgggtacgccgccaccgacggcatcgacgcccccctgtggtgtat 34199
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| | ||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||
Sbjct: 34200 cctctgcgggaaccgcgcgccgtagcccaccatgtacgacatcccctgcgggttcgcgcc 34259
Query: 605 cagtatgtagtccacctg 622
||| ||||||||||||||
Sbjct: 34260 caggatgtagtccacctg 34277
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1049 cacagcagctcgtcctggtatccggagtag 1078
||||| |||||||||||||| |||||||||
Sbjct: 35454 cacaggagctcgtcctggtagccggagtag 35483
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063
genomic scaffold, whole genome shotgun sequence
Length = 15204090
Score = 107 bits (54), Expect = 1e-020
Identities = 117/138 (84%)
Strand = Plus / Minus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||| ||||||||| ||||||||| ||||||| ||| | | |||||| ||
Sbjct: 76761 gcagccgatgtgcgccgggtacgccgccaccgacggcatcgacgcccccctgtggtgtat 76702
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| | ||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||
Sbjct: 76701 cctctgcgggaaccgcgcgccgtagcccaccatgtacgacatcccctgcgggttcgcgcc 76642
Query: 605 cagtatgtagtccacctg 622
||| ||||||||||||||
Sbjct: 76641 caggatgtagtccacctg 76624
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1049 cacagcagctcgtcctggtatccggagtag 1078
||||| |||||||||||||| |||||||||
Sbjct: 75447 cacaggagctcgtcctggtagccggagtag 75418
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 107 bits (54), Expect = 1e-020
Identities = 117/138 (84%)
Strand = Plus / Minus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||| ||||||||| ||||||||| ||||||| ||| | | |||||| ||
Sbjct: 13476200 gcagccgatgtgcgccgggtacgccgccaccgacggcatcgacgcccccctgtggtgtat 13476141
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| | ||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||
Sbjct: 13476140 cctctgcgggaaccgcgcgccgtagcccaccatgtacgacatcccctgcgggttcgcgcc 13476081
Query: 605 cagtatgtagtccacctg 622
||| ||||||||||||||
Sbjct: 13476080 caggatgtagtccacctg 13476063
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1049 cacagcagctcgtcctggtatccggagtag 1078
||||| |||||||||||||| |||||||||
Sbjct: 13474886 cacaggagctcgtcctggtagccggagtag 13474857
>emb|BX548155.1|OSJN00293 Oryza sativa genomic DNA, chromosome 4, BAC clone: P0041A24, complete
sequence
Length = 50879
Score = 107 bits (54), Expect = 1e-020
Identities = 117/138 (84%)
Strand = Plus / Plus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||| ||||||||| ||||||||| ||||||| ||| | | |||||| ||
Sbjct: 34140 gcagccgatgtgcgccgggtacgccgccaccgacggcatcgacgcccccctgtggtgtat 34199
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| | ||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||
Sbjct: 34200 cctctgcgggaaccgcgcgccgtagcccaccatgtacgacatcccctgcgggttcgcgcc 34259
Query: 605 cagtatgtagtccacctg 622
||| ||||||||||||||
Sbjct: 34260 caggatgtagtccacctg 34277
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1049 cacagcagctcgtcctggtatccggagtag 1078
||||| |||||||||||||| |||||||||
Sbjct: 35454 cacaggagctcgtcctggtagccggagtag 35483
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 107 bits (54), Expect = 1e-020
Identities = 117/138 (84%)
Strand = Plus / Plus
Query: 485 gcagccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggat 544
||||||||| ||||||||| ||||||||| ||||||| ||| | | |||||| ||
Sbjct: 22089448 gcagccgatgtgcgccgggtacgccgccaccgacggcatcgacgcccccctgtggtgtat 22089507
Query: 545 ccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcc 604
|| | ||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||
Sbjct: 22089508 cctctgcgggaaccgcgcgccgtagcccaccatgtacgacatcccctgcgggttcgcgcc 22089567
Query: 605 cagtatgtagtccacctg 622
||| ||||||||||||||
Sbjct: 22089568 caggatgtagtccacctg 22089585
Score = 44.1 bits (22), Expect = 0.18
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1049 cacagcagctcgtcctggtatccgga 1074
|||||||||||||||||||| |||||
Sbjct: 34487663 cacagcagctcgtcctggtagccgga 34487688
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1049 cacagcagctcgtcctggtatccggagtag 1078
||||| |||||||||||||| |||||||||
Sbjct: 22090762 cacaggagctcgtcctggtagccggagtag 22090791
>dbj|AK106851.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A12, full
insert sequence
Length = 1782
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 568 accccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctgccgct 627
||||||||||||||||||||| | |||||| | ||||| |||||||||||||||||||
Sbjct: 1370 accccaccatgtacgacatccccgccgggttcttccccaggatgtagtccacctgccgct 1311
Query: 628 tggccac 634
| |||||
Sbjct: 1310 tcgccac 1304
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttgggc 452
|||||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 1527 ggcccgccgacgacggcgccgacgagcacgttcgggttgggc 1486
Score = 44.1 bits (22), Expect = 0.18
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 308 gaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtggtgggctcggactgc 365
|||||||||||| ||| | |||||||||||||||||| |||| ||||| ||||||
Sbjct: 1627 gaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccgactgc 1570
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0427G12
Length = 185545
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 568 accccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctgccgct 627
||||||||||||||||||||| | |||||| | ||||| |||||||||||||||||||
Sbjct: 57542 accccaccatgtacgacatccccgccgggttcttccccaggatgtagtccacctgccgct 57483
Query: 628 tggccac 634
| |||||
Sbjct: 57482 tcgccac 57476
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttgggc 452
|||||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 57699 ggcccgccgacgacggcgccgacgagcacgttcgggttgggc 57658
Score = 44.1 bits (22), Expect = 0.18
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 308 gaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtggtgggctcggactgc 365
|||||||||||| ||| | |||||||||||||||||| |||| ||||| ||||||
Sbjct: 57799 gaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccgactgc 57742
>gb|AACV01017130.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017130, whole
genome shotgun sequence
Length = 21954
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 568 accccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctgccgct 627
||||||||||||||||||||| | |||||| | ||||| |||||||||||||||||||
Sbjct: 11380 accccaccatgtacgacatccccgccgggttcttccccaggatgtagtccacctgccgct 11439
Query: 628 tggccac 634
| |||||
Sbjct: 11440 tcgccac 11446
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttgggc 452
|||||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 11223 ggcccgccgacgacggcgccgacgagcacgttcgggttgggc 11264
Score = 44.1 bits (22), Expect = 0.18
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 308 gaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtggtgggctcggactgc 365
|||||||||||| ||| | |||||||||||||||||| |||| ||||| ||||||
Sbjct: 11123 gaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccgactgc 11180
>ref|XM_479767.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1782
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 568 accccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctgccgct 627
||||||||||||||||||||| | |||||| | ||||| |||||||||||||||||||
Sbjct: 1370 accccaccatgtacgacatccccgccgggttcttccccaggatgtagtccacctgccgct 1311
Query: 628 tggccac 634
| |||||
Sbjct: 1310 tcgccac 1304
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttgggc 452
|||||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 1527 ggcccgccgacgacggcgccgacgagcacgttcgggttgggc 1486
Score = 44.1 bits (22), Expect = 0.18
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 308 gaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtggtgggctcggactgc 365
|||||||||||| ||| | |||||||||||||||||| |||| ||||| ||||||
Sbjct: 1627 gaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccgactgc 1570
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 568 accccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctgccgct 627
||||||||||||||||||||| | |||||| | ||||| |||||||||||||||||||
Sbjct: 524748 accccaccatgtacgacatccccgccgggttcttccccaggatgtagtccacctgccgct 524689
Query: 628 tggccac 634
| |||||
Sbjct: 524688 tcgccac 524682
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttgggc 452
|||||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 524905 ggcccgccgacgacggcgccgacgagcacgttcgggttgggc 524864
Score = 56.0 bits (28), Expect = 5e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 532 cgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgca 591
|||||||||| | |||||||||||||||| |||||||| |||||||| || || |
Sbjct: 20184428 cgcggtggtgcacccgccgcgggaaccgccgcccgtacccgaccatgtagctcacccccg 20184487
Query: 592 gcgggttgtcgcccagtatgtagtccacctgc 623
||||||||||||||| | ||||||| |||||
Sbjct: 20184488 ccgggttgtcgcccagcacgtagtccgcctgc 20184519
Score = 44.1 bits (22), Expect = 0.18
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 308 gaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtggtgggctcggactgc 365
|||||||||||| ||| | |||||||||||||||||| |||| ||||| ||||||
Sbjct: 525005 gaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccgactgc 524948
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065
genomic scaffold, whole genome shotgun sequence
Length = 5026603
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 568 accccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctgccgct 627
||||||||||||||||||||| | |||||| | ||||| |||||||||||||||||||
Sbjct: 765763 accccaccatgtacgacatccccgccgggttcttccccaggatgtagtccacctgccgct 765704
Query: 628 tggccac 634
| |||||
Sbjct: 765703 tcgccac 765697
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttgggc 452
|||||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 765920 ggcccgccgacgacggcgccgacgagcacgttcgggttgggc 765879
Score = 44.1 bits (22), Expect = 0.18
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 308 gaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtggtgggctcggactgc 365
|||||||||||| ||| | |||||||||||||||||| |||| ||||| ||||||
Sbjct: 766020 gaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccgactgc 765963
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 568 accccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctgccgct 627
||||||||||||||||||||| | |||||| | ||||| |||||||||||||||||||
Sbjct: 765763 accccaccatgtacgacatccccgccgggttcttccccaggatgtagtccacctgccgct 765704
Query: 628 tggccac 634
| |||||
Sbjct: 765703 tcgccac 765697
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttgggc 452
|||||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 765920 ggcccgccgacgacggcgccgacgagcacgttcgggttgggc 765879
Score = 56.0 bits (28), Expect = 5e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 532 cgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgca 591
|||||||||| | |||||||||||||||| |||||||| |||||||| || || |
Sbjct: 19264618 cgcggtggtgcacccgccgcgggaaccgccgcccgtacccgaccatgtagctcacccccg 19264677
Query: 592 gcgggttgtcgcccagtatgtagtccacctgc 623
||||||||||||||| | ||||||| |||||
Sbjct: 19264678 ccgggttgtcgcccagcacgtagtccgcctgc 19264709
Score = 44.1 bits (22), Expect = 0.18
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 308 gaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtggtgggctcggactgc 365
|||||||||||| ||| | |||||||||||||||||| |||| ||||| ||||||
Sbjct: 766020 gaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccgactgc 765963
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
complete sequence
Length = 28434780
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 568 accccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctgccgct 627
||||||||||||||||||||| | |||||| | ||||| |||||||||||||||||||
Sbjct: 758322 accccaccatgtacgacatccccgccgggttcttccccaggatgtagtccacctgccgct 758263
Query: 628 tggccac 634
| |||||
Sbjct: 758262 tcgccac 758256
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttgggc 452
|||||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 758479 ggcccgccgacgacggcgccgacgagcacgttcgggttgggc 758438
Score = 56.0 bits (28), Expect = 5e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 532 cgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgca 591
|||||||||| | |||||||||||||||| |||||||| |||||||| || || |
Sbjct: 20422515 cgcggtggtgcacccgccgcgggaaccgccgcccgtacccgaccatgtagctcacccccg 20422574
Query: 592 gcgggttgtcgcccagtatgtagtccacctgc 623
||||||||||||||| | ||||||| |||||
Sbjct: 20422575 ccgggttgtcgcccagcacgtagtccgcctgc 20422606
Score = 44.1 bits (22), Expect = 0.18
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 308 gaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtggtgggctcggactgc 365
|||||||||||| ||| | |||||||||||||||||| |||| ||||| ||||||
Sbjct: 758579 gaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccgactgc 758522
>dbj|AK106815.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D02, full
insert sequence
Length = 1927
Score = 67.9 bits (34), Expect = 1e-008
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 896 ctcctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttg 953
|||||| |||| ||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 981 ctccttggagacaaggacattgatgccggcatgcttgttgtcccagccgaattcgttg 924
>dbj|AK120767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007M03, full
insert sequence
Length = 2904
Score = 65.9 bits (33), Expect = 5e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 909 aggacgttgatgccggcgtgcttgttgtcccagccgaactcgttg 953
||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 2696 aggacattgatgccggcatgcttgttgtcccagccgaattcgttg 2740
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1531_B07
Length = 115245
Score = 65.9 bits (33), Expect = 5e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 909 aggacgttgatgccggcgtgcttgttgtcccagccgaactcgttg 953
||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 93552 aggacattgatgccggcatgcttgttgtcccagccgaattcgttg 93508
>gb|AACV01020439.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020439, whole
genome shotgun sequence
Length = 19217
Score = 65.9 bits (33), Expect = 5e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 909 aggacgttgatgccggcgtgcttgttgtcccagccgaactcgttg 953
||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 1988 aggacattgatgccggcatgcttgttgtcccagccgaattcgttg 2032
>ref|NT_107077.1| Oryza sativa (japonica cultivar-group)
Length = 1516644
Score = 65.9 bits (33), Expect = 5e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 909 aggacgttgatgccggcgtgcttgttgtcccagccgaactcgttg 953
||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 358913 aggacattgatgccggcatgcttgttgtcccagccgaattcgttg 358869
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 65.9 bits (33), Expect = 5e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 909 aggacgttgatgccggcgtgcttgttgtcccagccgaactcgttg 953
||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 9948897 aggacattgatgccggcatgcttgttgtcccagccgaattcgttg 9948853
Score = 46.1 bits (23), Expect = 0.045
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1009 cccgccgccgcgtcgccttgtgc 1031
|||||||||||||||||||||||
Sbjct: 5852718 cccgccgccgcgtcgccttgtgc 5852740
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 65.9 bits (33), Expect = 5e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 909 aggacgttgatgccggcgtgcttgttgtcccagccgaactcgttg 953
||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 19422708 aggacattgatgccggcatgcttgttgtcccagccgaattcgttg 19422664
Score = 46.1 bits (23), Expect = 0.045
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1009 cccgccgccgcgtcgccttgtgc 1031
|||||||||||||||||||||||
Sbjct: 15326529 cccgccgccgcgtcgccttgtgc 15326551
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,079,438
Number of Sequences: 438736
Number of extensions: 2079438
Number of successful extensions: 20199
Number of sequences better than 0.5: 94
Number of HSP's better than 0.5 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18184
Number of HSP's gapped (non-prelim): 1985
length of query: 1222
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1201
effective length of database: 2,791,206,460
effective search space: 3352238958460
effective search space used: 3352238958460
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)