BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591131.2.1
(596 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK101940.1| Oryza sativa (japonica cultivar-group) cDNA... 545 e-153
dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chro... 396 e-108
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 396 e-108
dbj|AP003539.3| Oryza sativa (japonica cultivar-group) geno... 396 e-108
gb|AACV01014579.1| Oryza sativa (japonica cultivar-group) c... 396 e-108
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 396 e-108
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 396 e-108
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 396 e-108
dbj|AK063455.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AK101784.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AK119215.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 ... 58 6e-006
gb|AACV01008182.1| Oryza sativa (japonica cultivar-group) c... 58 6e-006
ref|NM_185168.1| Oryza sativa (japonica cultivar-group), mRNA 58 6e-006
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 58 6e-006
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|AU029532.1|AU029532 AU029532 Rice panicle shorter than 3... 52 3e-004
gb|CV730571.1|CV730571 FLO--04-C21.b1 Rice flower lambda ph... 50 0.001
dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic seque... 50 0.001
gb|AC087550.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|AC144737.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|AACV01000580.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
gb|AACV01012416.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
gb|AACV01021633.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 50 0.001
ref|NM_196687.1| Oryza sativa (japonica cultivar-group) put... 50 0.001
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 50 0.001
ref|XM_475418.1| Oryza sativa (japonica cultivar-group), p... 50 0.001
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 50 0.001
ref|NM_188792.1| Oryza sativa (japonica cultivar-group), p... 50 0.001
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 50 0.001
dbj|AP002865.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|DQ061054.1| Oryza sativa (japonica cultivar-group) alpha... 50 0.001
gb|DQ061067.1| Oryza sativa (japonica cultivar-group) alpha... 50 0.001
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|AC133338.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 ... 46 0.021
gb|AACV01006741.1| Oryza sativa (japonica cultivar-group) c... 46 0.021
ref|XM_470717.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.021
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 46 0.021
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|DQ061062.1| Oryza sativa (japonica cultivar-group) alpha... 46 0.021
gb|AC145273.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.085
gb|AACV01011535.1| Oryza sativa (japonica cultivar-group) c... 44 0.085
ref|NT_107229.1| Oryza sativa (japonica cultivar-group) 44 0.085
gb|CH401200.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.085
gb|C25149.1|C25149 C25149 Rice shoot Oryza sativa (japonica... 42 0.34
gb|C74288.1|C74288 C74288 Rice panicle shorter than 3cm Ory... 42 0.34
gb|AU078738.1|AU078738 AU078738 Rice shoot Oryza sativa (ja... 42 0.34
gb|AU081601.1|AU081601 AU081601 Rice shoot Oryza sativa (ja... 42 0.34
gb|CB645780.1|CB645780 OSJNEb07L24.r OSJNEb Oryza sativa (j... 42 0.34
dbj|AK070463.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.34
dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.34
dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.34
gb|U30477.1|OSU30477 Oryza sativa (japonica cultivar-group)... 42 0.34
gb|AACV01002595.1| Oryza sativa (japonica cultivar-group) c... 42 0.34
gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) c... 42 0.34
ref|NM_190380.1| Oryza sativa (japonica cultivar-group), p... 42 0.34
ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.34
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 42 0.34
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 42 0.34
ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-... 42 0.34
dbj|AP004114.3| Oryza sativa (japonica cultivar-group) geno... 42 0.34
dbj|AP005297.3| Oryza sativa (japonica cultivar-group) geno... 42 0.34
dbj|AP003348.3| Oryza sativa (japonica cultivar-group) geno... 42 0.34
dbj|AP003229.3| Oryza sativa (japonica cultivar-group) geno... 42 0.34
dbj|AP003343.3| Oryza sativa (japonica cultivar-group) geno... 42 0.34
dbj|AP003230.4| Oryza sativa (japonica cultivar-group) geno... 42 0.34
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.34
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.34
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.34
gb|DQ061057.1| Oryza sativa (japonica cultivar-group) alpha... 42 0.34
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.34
>dbj|AK101940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074I02, full
insert sequence
Length = 1156
Score = 545 bits (275), Expect = e-153
Identities = 380/415 (91%)
Strand = Plus / Minus
Query: 180 ctactcggcgaactgcttgccctcgaacgtctgcgcgaacatccagtccgccggcgccac 239
||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||||| ||
Sbjct: 964 ctactcgacgaactgcttgccttcgaaggtctgcgcgaacatccagtccggcggcgcgac 905
Query: 240 gctgtaggcggtgaccgtcctgcccctcccgccggtgacctcgaacgacagcggctgggc 299
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct: 904 gctgtaggcgacgaccgtgcggcccctcccgccggtgacctcgaacgacagcggctggcc 845
Query: 300 gcggaggtcggcgtcgcactgccagttctggccccagttccgccccatcgggatccaccc 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 844 gcggaggtcggcgtcgcactgccagttctggccccagttcctccccatcgggatccaccc 785
Query: 360 cgtcctcgagcccttcaccttcacggccgccacctcgccgtccgccgccacgttggtgat 419
|||||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 784 ggtcctcgaccctttcaccttcaccgccgccacctccccgtccgccgccacgttcgtgat 725
Query: 420 gagcacctgcaggaagtgggcgctaccggagatggtgaaccgcatgccgcccgccctgtc 479
||||||||||||||| ||||| |||| ||||||||||| ||| || || ||||||||
Sbjct: 724 cagcacctgcaggaagctggcgccgccggtgatggtgaacctcatcccccctgccctgtc 665
Query: 480 gcagctcaccctccggaactgcaccggcacgatgccggccttggccttggcgacgcggag 539
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 664 acagctcaccctccggaactgcaccggcacaatgtcggccttggccttggcgacgcggag 605
Query: 540 gaacgcggcctccgacagctcgaggtgctcccgcgggaagttgcaccagccgccg 594
||||||||||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 604 gaacgcggcctccgacatctcgaagtgctccttggggaagttgcaccagccgccg 550
>dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1008_D02, ***
SEQUENCING IN PROGRESS ***
Length = 140327
Score = 396 bits (200), Expect = e-108
Identities = 284/312 (91%)
Strand = Plus / Plus
Query: 180 ctactcggcgaactgcttgccctcgaacgtctgcgcgaacatccagtccgccggcgccac 239
||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||||| ||
Sbjct: 117272 ctactcgacgaactgcttgccttcgaaggtctgcgcgaacatccagtccggcggcgcgac 117331
Query: 240 gctgtaggcggtgaccgtcctgcccctcccgccggtgacctcgaacgacagcggctgggc 299
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct: 117332 gctgtaggcgacgaccgtgcggcccctcccgccggtgacctcgaacgacagcggctggcc 117391
Query: 300 gcggaggtcggcgtcgcactgccagttctggccccagttccgccccatcgggatccaccc 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 117392 gcggaggtcggcgtcgcactgccagttctggccccagttcctccccatcgggatccaccc 117451
Query: 360 cgtcctcgagcccttcaccttcacggccgccacctcgccgtccgccgccacgttggtgat 419
|||||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 117452 ggtcctcgaccctttcaccttcaccgccgccacctccccgtccgccgccacgttcgtgat 117511
Query: 420 gagcacctgcaggaagtgggcgctaccggagatggtgaaccgcatgccgcccgccctgtc 479
||||||||||||||| ||||| |||| ||||||||||| ||| || || ||||||||
Sbjct: 117512 cagcacctgcaggaagctggcgccgccggtgatggtgaacctcatcccccctgccctgtc 117571
Query: 480 gcagctcaccct 491
|||||||||||
Sbjct: 117572 acagctcaccct 117583
Score = 155 bits (78), Expect = 3e-035
Identities = 99/106 (93%)
Strand = Plus / Plus
Query: 489 cctccggaactgcaccggcacgatgccggccttggccttggcgacgcggaggaacgcggc 548
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 119545 cctccggaactgcaccggcacaatgtcggccttggccttggcgacgcggaggaacgcggc 119604
Query: 549 ctccgacagctcgaggtgctcccgcgggaagttgcaccagccgccg 594
|||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 119605 ctccgacatctcgaagtgctccttggggaagttgcaccagccgccg 119650
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 396 bits (200), Expect = e-108
Identities = 284/312 (91%)
Strand = Plus / Minus
Query: 180 ctactcggcgaactgcttgccctcgaacgtctgcgcgaacatccagtccgccggcgccac 239
||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||||| ||
Sbjct: 2068293 ctactcgacgaactgcttgccttcgaaggtctgcgcgaacatccagtccggcggcgcgac 2068234
Query: 240 gctgtaggcggtgaccgtcctgcccctcccgccggtgacctcgaacgacagcggctgggc 299
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct: 2068233 gctgtaggcgacgaccgtgcggcccctcccgccggtgacctcgaacgacagcggctggcc 2068174
Query: 300 gcggaggtcggcgtcgcactgccagttctggccccagttccgccccatcgggatccaccc 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2068173 gcggaggtcggcgtcgcactgccagttctggccccagttcctccccatcgggatccaccc 2068114
Query: 360 cgtcctcgagcccttcaccttcacggccgccacctcgccgtccgccgccacgttggtgat 419
|||||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 2068113 ggtcctcgaccctttcaccttcaccgccgccacctccccgtccgccgccacgttcgtgat 2068054
Query: 420 gagcacctgcaggaagtgggcgctaccggagatggtgaaccgcatgccgcccgccctgtc 479
||||||||||||||| ||||| |||| ||||||||||| ||| || || ||||||||
Sbjct: 2068053 cagcacctgcaggaagctggcgccgccggtgatggtgaacctcatcccccctgccctgtc 2067994
Query: 480 gcagctcaccct 491
|||||||||||
Sbjct: 2067993 acagctcaccct 2067982
Score = 155 bits (78), Expect = 3e-035
Identities = 99/106 (93%)
Strand = Plus / Minus
Query: 489 cctccggaactgcaccggcacgatgccggccttggccttggcgacgcggaggaacgcggc 548
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 2066020 cctccggaactgcaccggcacaatgtcggccttggccttggcgacgcggaggaacgcggc 2065961
Query: 549 ctccgacagctcgaggtgctcccgcgggaagttgcaccagccgccg 594
|||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 2065960 ctccgacatctcgaagtgctccttggggaagttgcaccagccgccg 2065915
>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0040H10
Length = 173301
Score = 396 bits (200), Expect = e-108
Identities = 284/312 (91%)
Strand = Plus / Minus
Query: 180 ctactcggcgaactgcttgccctcgaacgtctgcgcgaacatccagtccgccggcgccac 239
||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||||| ||
Sbjct: 86001 ctactcgacgaactgcttgccttcgaaggtctgcgcgaacatccagtccggcggcgcgac 85942
Query: 240 gctgtaggcggtgaccgtcctgcccctcccgccggtgacctcgaacgacagcggctgggc 299
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct: 85941 gctgtaggcgacgaccgtgcggcccctcccgccggtgacctcgaacgacagcggctggcc 85882
Query: 300 gcggaggtcggcgtcgcactgccagttctggccccagttccgccccatcgggatccaccc 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 85881 gcggaggtcggcgtcgcactgccagttctggccccagttcctccccatcgggatccaccc 85822
Query: 360 cgtcctcgagcccttcaccttcacggccgccacctcgccgtccgccgccacgttggtgat 419
|||||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 85821 ggtcctcgaccctttcaccttcaccgccgccacctccccgtccgccgccacgttcgtgat 85762
Query: 420 gagcacctgcaggaagtgggcgctaccggagatggtgaaccgcatgccgcccgccctgtc 479
||||||||||||||| ||||| |||| ||||||||||| ||| || || ||||||||
Sbjct: 85761 cagcacctgcaggaagctggcgccgccggtgatggtgaacctcatcccccctgccctgtc 85702
Query: 480 gcagctcaccct 491
|||||||||||
Sbjct: 85701 acagctcaccct 85690
Score = 155 bits (78), Expect = 3e-035
Identities = 99/106 (93%)
Strand = Plus / Minus
Query: 489 cctccggaactgcaccggcacgatgccggccttggccttggcgacgcggaggaacgcggc 548
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 83728 cctccggaactgcaccggcacaatgtcggccttggccttggcgacgcggaggaacgcggc 83669
Query: 549 ctccgacagctcgaggtgctcccgcgggaagttgcaccagccgccg 594
|||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 83668 ctccgacatctcgaagtgctccttggggaagttgcaccagccgccg 83623
>gb|AACV01014579.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014579, whole
genome shotgun sequence
Length = 19733
Score = 396 bits (200), Expect = e-108
Identities = 284/312 (91%)
Strand = Plus / Plus
Query: 180 ctactcggcgaactgcttgccctcgaacgtctgcgcgaacatccagtccgccggcgccac 239
||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||||| ||
Sbjct: 15780 ctactcgacgaactgcttgccttcgaaggtctgcgcgaacatccagtccggcggcgcgac 15839
Query: 240 gctgtaggcggtgaccgtcctgcccctcccgccggtgacctcgaacgacagcggctgggc 299
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct: 15840 gctgtaggcgacgaccgtgcggcccctcccgccggtgacctcgaacgacagcggctggcc 15899
Query: 300 gcggaggtcggcgtcgcactgccagttctggccccagttccgccccatcgggatccaccc 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 15900 gcggaggtcggcgtcgcactgccagttctggccccagttcctccccatcgggatccaccc 15959
Query: 360 cgtcctcgagcccttcaccttcacggccgccacctcgccgtccgccgccacgttggtgat 419
|||||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 15960 ggtcctcgaccctttcaccttcaccgccgccacctccccgtccgccgccacgttcgtgat 16019
Query: 420 gagcacctgcaggaagtgggcgctaccggagatggtgaaccgcatgccgcccgccctgtc 479
||||||||||||||| ||||| |||| ||||||||||| ||| || || ||||||||
Sbjct: 16020 cagcacctgcaggaagctggcgccgccggtgatggtgaacctcatcccccctgccctgtc 16079
Query: 480 gcagctcaccct 491
|||||||||||
Sbjct: 16080 acagctcaccct 16091
Score = 155 bits (78), Expect = 3e-035
Identities = 99/106 (93%)
Strand = Plus / Plus
Query: 489 cctccggaactgcaccggcacgatgccggccttggccttggcgacgcggaggaacgcggc 548
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 18053 cctccggaactgcaccggcacaatgtcggccttggccttggcgacgcggaggaacgcggc 18112
Query: 549 ctccgacagctcgaggtgctcccgcgggaagttgcaccagccgccg 594
|||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 18113 ctccgacatctcgaagtgctccttggggaagttgcaccagccgccg 18158
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 396 bits (200), Expect = e-108
Identities = 284/312 (91%)
Strand = Plus / Minus
Query: 180 ctactcggcgaactgcttgccctcgaacgtctgcgcgaacatccagtccgccggcgccac 239
||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||||| ||
Sbjct: 5971092 ctactcgacgaactgcttgccttcgaaggtctgcgcgaacatccagtccggcggcgcgac 5971033
Query: 240 gctgtaggcggtgaccgtcctgcccctcccgccggtgacctcgaacgacagcggctgggc 299
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct: 5971032 gctgtaggcgacgaccgtgcggcccctcccgccggtgacctcgaacgacagcggctggcc 5970973
Query: 300 gcggaggtcggcgtcgcactgccagttctggccccagttccgccccatcgggatccaccc 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5970972 gcggaggtcggcgtcgcactgccagttctggccccagttcctccccatcgggatccaccc 5970913
Query: 360 cgtcctcgagcccttcaccttcacggccgccacctcgccgtccgccgccacgttggtgat 419
|||||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 5970912 ggtcctcgaccctttcaccttcaccgccgccacctccccgtccgccgccacgttcgtgat 5970853
Query: 420 gagcacctgcaggaagtgggcgctaccggagatggtgaaccgcatgccgcccgccctgtc 479
||||||||||||||| ||||| |||| ||||||||||| ||| || || ||||||||
Sbjct: 5970852 cagcacctgcaggaagctggcgccgccggtgatggtgaacctcatcccccctgccctgtc 5970793
Query: 480 gcagctcaccct 491
|||||||||||
Sbjct: 5970792 acagctcaccct 5970781
Score = 155 bits (78), Expect = 3e-035
Identities = 99/106 (93%)
Strand = Plus / Minus
Query: 489 cctccggaactgcaccggcacgatgccggccttggccttggcgacgcggaggaacgcggc 548
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 5968819 cctccggaactgcaccggcacaatgtcggccttggccttggcgacgcggaggaacgcggc 5968760
Query: 549 ctccgacagctcgaggtgctcccgcgggaagttgcaccagccgccg 594
|||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 5968759 ctccgacatctcgaagtgctccttggggaagttgcaccagccgccg 5968714
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 396 bits (200), Expect = e-108
Identities = 284/312 (91%)
Strand = Plus / Minus
Query: 180 ctactcggcgaactgcttgccctcgaacgtctgcgcgaacatccagtccgccggcgccac 239
||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||||| ||
Sbjct: 23669829 ctactcgacgaactgcttgccttcgaaggtctgcgcgaacatccagtccggcggcgcgac 23669770
Query: 240 gctgtaggcggtgaccgtcctgcccctcccgccggtgacctcgaacgacagcggctgggc 299
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct: 23669769 gctgtaggcgacgaccgtgcggcccctcccgccggtgacctcgaacgacagcggctggcc 23669710
Query: 300 gcggaggtcggcgtcgcactgccagttctggccccagttccgccccatcgggatccaccc 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 23669709 gcggaggtcggcgtcgcactgccagttctggccccagttcctccccatcgggatccaccc 23669650
Query: 360 cgtcctcgagcccttcaccttcacggccgccacctcgccgtccgccgccacgttggtgat 419
|||||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 23669649 ggtcctcgaccctttcaccttcaccgccgccacctccccgtccgccgccacgttcgtgat 23669590
Query: 420 gagcacctgcaggaagtgggcgctaccggagatggtgaaccgcatgccgcccgccctgtc 479
||||||||||||||| ||||| |||| ||||||||||| ||| || || ||||||||
Sbjct: 23669589 cagcacctgcaggaagctggcgccgccggtgatggtgaacctcatcccccctgccctgtc 23669530
Query: 480 gcagctcaccct 491
|||||||||||
Sbjct: 23669529 acagctcaccct 23669518
Score = 155 bits (78), Expect = 3e-035
Identities = 99/106 (93%)
Strand = Plus / Minus
Query: 489 cctccggaactgcaccggcacgatgccggccttggccttggcgacgcggaggaacgcggc 548
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 23667556 cctccggaactgcaccggcacaatgtcggccttggccttggcgacgcggaggaacgcggc 23667497
Query: 549 ctccgacagctcgaggtgctcccgcgggaagttgcaccagccgccg 594
|||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 23667496 ctccgacatctcgaagtgctccttggggaagttgcaccagccgccg 23667451
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 396 bits (200), Expect = e-108
Identities = 284/312 (91%)
Strand = Plus / Minus
Query: 180 ctactcggcgaactgcttgccctcgaacgtctgcgcgaacatccagtccgccggcgccac 239
||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||||| ||
Sbjct: 24602808 ctactcgacgaactgcttgccttcgaaggtctgcgcgaacatccagtccggcggcgcgac 24602749
Query: 240 gctgtaggcggtgaccgtcctgcccctcccgccggtgacctcgaacgacagcggctgggc 299
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct: 24602748 gctgtaggcgacgaccgtgcggcccctcccgccggtgacctcgaacgacagcggctggcc 24602689
Query: 300 gcggaggtcggcgtcgcactgccagttctggccccagttccgccccatcgggatccaccc 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 24602688 gcggaggtcggcgtcgcactgccagttctggccccagttcctccccatcgggatccaccc 24602629
Query: 360 cgtcctcgagcccttcaccttcacggccgccacctcgccgtccgccgccacgttggtgat 419
|||||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 24602628 ggtcctcgaccctttcaccttcaccgccgccacctccccgtccgccgccacgttcgtgat 24602569
Query: 420 gagcacctgcaggaagtgggcgctaccggagatggtgaaccgcatgccgcccgccctgtc 479
||||||||||||||| ||||| |||| ||||||||||| ||| || || ||||||||
Sbjct: 24602568 cagcacctgcaggaagctggcgccgccggtgatggtgaacctcatcccccctgccctgtc 24602509
Query: 480 gcagctcaccct 491
|||||||||||
Sbjct: 24602508 acagctcaccct 24602497
Score = 155 bits (78), Expect = 3e-035
Identities = 99/106 (93%)
Strand = Plus / Minus
Query: 489 cctccggaactgcaccggcacgatgccggccttggccttggcgacgcggaggaacgcggc 548
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 24600535 cctccggaactgcaccggcacaatgtcggccttggccttggcgacgcggaggaacgcggc 24600476
Query: 549 ctccgacagctcgaggtgctcccgcgggaagttgcaccagccgccg 594
|||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 24600475 ctccgacatctcgaagtgctccttggggaagttgcaccagccgccg 24600430
>dbj|AK063455.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G06, full
insert sequence
Length = 1653
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 317 actgccagttctggccccagttccgccccatcgggatccaccccgtcctcgagcccttca 376
|||||||||||||||||||||||||| ||| || |||||||| || |||| |||||||
Sbjct: 215 actgccagttctggccccagttccgcgacatgggcatccacccggtgctcgtccccttca 156
Query: 377 c 377
|
Sbjct: 155 c 155
>dbj|AK101784.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065B20, full
insert sequence
Length = 1319
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 317 actgccagttctggccccagttccgccccatcgggatccaccccgtcctcgagcccttca 376
|||||||||||||||||||||||||| ||| || |||||||| || |||| |||||||
Sbjct: 880 actgccagttctggccccagttccgcgacatgggcatccacccggtgctcgtccccttca 821
Query: 377 c 377
|
Sbjct: 820 c 820
>dbj|AK119215.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G10, full
insert sequence
Length = 1366
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 317 actgccagttctggccccagttccgccccatcgggatccaccccgtcctcgagcccttca 376
|||||||||||||||||||||||||| ||| || |||||||| || |||| |||||||
Sbjct: 703 actgccagttctggccccagttccgcgacatgggcatccacccggtgctcgtccccttca 644
Query: 377 c 377
|
Sbjct: 643 c 643
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete
sequence
Length = 143205
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 317 actgccagttctggccccagttccgccccatcgggatccaccccgtcctcgagcccttca 376
|||||||||||||||||||||||||| ||| || |||||||| || |||| |||||||
Sbjct: 129849 actgccagttctggccccagttccgcgacatgggcatccacccggtgctcgtccccttca 129790
Query: 377 c 377
|
Sbjct: 129789 c 129789
>gb|AACV01008182.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008182, whole
genome shotgun sequence
Length = 29478
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 317 actgccagttctggccccagttccgccccatcgggatccaccccgtcctcgagcccttca 376
|||||||||||||||||||||||||| ||| || |||||||| || |||| |||||||
Sbjct: 19929 actgccagttctggccccagttccgcgacatgggcatccacccggtgctcgtccccttca 19870
Query: 377 c 377
|
Sbjct: 19869 c 19869
>ref|NM_185168.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1338
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 317 actgccagttctggccccagttccgccccatcgggatccaccccgtcctcgagcccttca 376
|||||||||||||||||||||||||| ||| || |||||||| || |||| |||||||
Sbjct: 684 actgccagttctggccccagttccgcgacatgggcatccacccggtgctcgtccccttca 625
Query: 377 c 377
|
Sbjct: 624 c 624
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 317 actgccagttctggccccagttccgccccatcgggatccaccccgtcctcgagcccttca 376
|||||||||||||||||||||||||| ||| || |||||||| || |||| |||||||
Sbjct: 862346 actgccagttctggccccagttccgcgacatgggcatccacccggtgctcgtccccttca 862405
Query: 377 c 377
|
Sbjct: 862406 c 862406
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 317 actgccagttctggccccagttccgccccatcgggatccaccccgtcctcgagcccttca 376
|||||||||||||||||||||||||| ||| || |||||||| || |||| |||||||
Sbjct: 7890972 actgccagttctggccccagttccgcgacatgggcatccacccggtgctcgtccccttca 7891031
Query: 377 c 377
|
Sbjct: 7891032 c 7891032
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 317 actgccagttctggccccagttccgccccatcgggatccaccccgtcctcgagcccttca 376
|||||||||||||||||||||||||| ||| || |||||||| || |||| |||||||
Sbjct: 35157135 actgccagttctggccccagttccgcgacatgggcatccacccggtgctcgtccccttca 35157194
Query: 377 c 377
|
Sbjct: 35157195 c 35157195
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 318 ctgccagttctggccccagttcc 340
|||||||||||||||||||||||
Sbjct: 15401017 ctgccagttctggccccagttcc 15400995
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 317 actgccagttctggccccagttccgccccatcgggatccaccccgtcctcgagcccttca 376
|||||||||||||||||||||||||| ||| || |||||||| || |||| |||||||
Sbjct: 34295621 actgccagttctggccccagttccgcgacatgggcatccacccggtgctcgtccccttca 34295680
Query: 377 c 377
|
Sbjct: 34295681 c 34295681
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 318 ctgccagttctggccccagttcc 340
|||||||||||||||||||||||
Sbjct: 14728628 ctgccagttctggccccagttcc 14728606
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 317 actgccagttctggccccagttccgccccatcgggatccaccccgtcctcgagcccttca 376
|||||||||||||||||||||||||| ||| || |||||||| || |||| |||||||
Sbjct: 34205149 actgccagttctggccccagttccgcgacatgggcatccacccggtgctcgtccccttca 34205208
Query: 377 c 377
|
Sbjct: 34205209 c 34205209
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 318 ctgccagttctggccccagttcc 340
|||||||||||||||||||||||
Sbjct: 14734094 ctgccagttctggccccagttcc 14734072
>gb|AU029532.1|AU029532 AU029532 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31041_8Z, mRNA sequence
Length = 524
Score = 52.0 bits (26), Expect = 3e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 317 actgccagttctggccccagttccgc 342
||||||||||||||||||||||||||
Sbjct: 53 actgccagttctggccccagttccgc 28
>gb|CV730571.1|CV730571 FLO--04-C21.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--04-C21,
mRNA sequence
Length = 506
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 318 ctgccagttctggccccagttccgc 342
|||||||||||||||||||||||||
Sbjct: 231 ctgccagttctggccccagttccgc 207
>dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029P10, full
insert sequence
Length = 1311
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 318 ctgccagttctggccccagttccgc 342
|||||||||||||||||||||||||
Sbjct: 672 ctgccagttctggccccagttccgc 648
>dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G10, full
insert sequence
Length = 2440
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 318 ctgccagttctggccccagttccgc 342
|||||||||||||||||||||||||
Sbjct: 671 ctgccagttctggccccagttccgc 647
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence
Length = 182756
Score = 50.1 bits (25), Expect = 0.001
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 282 gaacgacagcggctgggcgcggaggtcggcgtcgcactgccagttctggccccagttccg 341
||||||||||| |||| || ||||| |||| || ||||||||||| |||||||||||
Sbjct: 165148 gaacgacagcgcctggccggtgaggtacgcgttgctctgccagttctccccccagttccg 165207
Query: 342 ccccatcgggatccaccccgtcctcgagcccttcacc 378
| ||||| | |||| |||||| ||||||||||||
Sbjct: 165208 gctcatcgacagccactccgtcccggagcccttcacc 165244
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17,
complete sequence
Length = 141041
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 315 gcactgccagttctggccccagttccgccccatcgggatccaccccgtc 363
||||||||||||| ||||||||||| | ||| ||| ||||||||||||
Sbjct: 94544 gcactgccagttcgcgccccagttcctcgccagcggtatccaccccgtc 94592
>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0018K15, complete sequence
Length = 168519
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 318 ctgccagttctggccccagttccgc 342
|||||||||||||||||||||||||
Sbjct: 38031 ctgccagttctggccccagttccgc 38055
>gb|AACV01000580.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000580, whole
genome shotgun sequence
Length = 47299
Score = 50.1 bits (25), Expect = 0.001
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 282 gaacgacagcggctgggcgcggaggtcggcgtcgcactgccagttctggccccagttccg 341
||||||||||| |||| || ||||| |||| || ||||||||||| |||||||||||
Sbjct: 25010 gaacgacagcgcctggccggtgaggtacgcgttgctctgccagttctccccccagttccg 25069
Query: 342 ccccatcgggatccaccccgtcctcgagcccttcacc 378
| ||||| | |||| |||||| ||||||||||||
Sbjct: 25070 gctcatcgacagccactccgtcccggagcccttcacc 25106
>gb|AACV01012416.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012416, whole
genome shotgun sequence
Length = 33179
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 318 ctgccagttctggccccagttccgc 342
|||||||||||||||||||||||||
Sbjct: 10058 ctgccagttctggccccagttccgc 10034
>gb|AACV01021633.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021633, whole
genome shotgun sequence
Length = 31774
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 315 gcactgccagttctggccccagttccgccccatcgggatccaccccgtc 363
||||||||||||| ||||||||||| | ||| ||| ||||||||||||
Sbjct: 2966 gcactgccagttcgcgccccagttcctcgccagcggtatccaccccgtc 2918
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 50.1 bits (25), Expect = 0.001
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 282 gaacgacagcggctgggcgcggaggtcggcgtcgcactgccagttctggccccagttccg 341
||||||||||| |||| || ||||| |||| || ||||||||||| |||||||||||
Sbjct: 8198809 gaacgacagcgcctggccggtgaggtacgcgttgctctgccagttctccccccagttccg 8198868
Query: 342 ccccatcgggatccaccccgtcctcgagcccttcacc 378
| ||||| | |||| |||||| ||||||||||||
Sbjct: 8198869 gctcatcgacagccactccgtcccggagcccttcacc 8198905
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 318 ctgccagttctggccccagtt 338
|||||||||||||||||||||
Sbjct: 35220632 ctgccagttctggccccagtt 35220612
Score = 42.1 bits (21), Expect = 0.34
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 384 ggccgccacctcgccgtccgccgccacgt 412
|||||||||| ||||| ||||||||||||
Sbjct: 30303499 ggccgccaccgcgccggccgccgccacgt 30303527
>ref|NM_196687.1| Oryza sativa (japonica cultivar-group) putative expansin
(OSJNBb0016G17.16), mRNA
Length = 768
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 315 gcactgccagttctggccccagttccgccccatcgggatccaccccgtc 363
||||||||||||| ||||||||||| | ||| ||| ||||||||||||
Sbjct: 630 gcactgccagttcgcgccccagttcctcgccagcggtatccaccccgtc 582
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 315 gcactgccagttctggccccagttccgccccatcgggatccaccccgtc 363
||||||||||||| ||||||||||| | ||| ||| ||||||||||||
Sbjct: 1972476 gcactgccagttcgcgccccagttcctcgccagcggtatccaccccgtc 1972524
>ref|XM_475418.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 741
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 318 ctgccagttctggccccagttccgc 342
|||||||||||||||||||||||||
Sbjct: 609 ctgccagttctggccccagttccgc 585
>ref|NT_107213.1| Oryza sativa (japonica cultivar-group)
Length = 2036819
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 318 ctgccagttctggccccagttccgc 342
|||||||||||||||||||||||||
Sbjct: 1906331 ctgccagttctggccccagttccgc 1906355
>ref|NM_188792.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 765
Score = 50.1 bits (25), Expect = 0.001
Identities = 79/97 (81%)
Strand = Plus / Minus
Query: 282 gaacgacagcggctgggcgcggaggtcggcgtcgcactgccagttctggccccagttccg 341
||||||||||| |||| || ||||| |||| || ||||||||||| |||||||||||
Sbjct: 660 gaacgacagcgcctggccggtgaggtacgcgttgctctgccagttctccccccagttccg 601
Query: 342 ccccatcgggatccaccccgtcctcgagcccttcacc 378
| ||||| | |||| |||||| ||||||||||||
Sbjct: 600 gctcatcgacagccactccgtcccggagcccttcacc 564
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 50.1 bits (25), Expect = 0.001
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 282 gaacgacagcggctgggcgcggaggtcggcgtcgcactgccagttctggccccagttccg 341
||||||||||| |||| || ||||| |||| || ||||||||||| |||||||||||
Sbjct: 8198649 gaacgacagcgcctggccggtgaggtacgcgttgctctgccagttctccccccagttccg 8198708
Query: 342 ccccatcgggatccaccccgtcctcgagcccttcacc 378
| ||||| | |||| |||||| ||||||||||||
Sbjct: 8198709 gctcatcgacagccactccgtcccggagcccttcacc 8198745
>dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0034C11
Length = 139399
Score = 50.1 bits (25), Expect = 0.001
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 282 gaacgacagcggctgggcgcggaggtcggcgtcgcactgccagttctggccccagttccg 341
||||||||||| |||| || ||||| |||| || ||||||||||| |||||||||||
Sbjct: 118745 gaacgacagcgcctggccggtgaggtacgcgttgctctgccagttctccccccagttccg 118804
Query: 342 ccccatcgggatccaccccgtcctcgagcccttcacc 378
| ||||| | |||| |||||| ||||||||||||
Sbjct: 118805 gctcatcgacagccactccgtcccggagcccttcacc 118841
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 315 gcactgccagttctggccccagttccgccccatcgggatccaccccgtc 363
||||||||||||| ||||||||||| | ||| ||| ||||||||||||
Sbjct: 3174563 gcactgccagttcgcgccccagttcctcgccagcggtatccaccccgtc 3174611
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 318 ctgccagttctggccccagttccgc 342
|||||||||||||||||||||||||
Sbjct: 5728499 ctgccagttctggccccagttccgc 5728523
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 50.1 bits (25), Expect = 0.001
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 282 gaacgacagcggctgggcgcggaggtcggcgtcgcactgccagttctggccccagttccg 341
||||||||||| |||| || ||||| |||| || ||||||||||| |||||||||||
Sbjct: 8249351 gaacgacagcgcctggccggtgaggtacgcgttgctctgccagttctccccccagttccg 8249410
Query: 342 ccccatcgggatccaccccgtcctcgagcccttcacc 378
| ||||| | |||| |||||| ||||||||||||
Sbjct: 8249411 gctcatcgacagccactccgtcccggagcccttcacc 8249447
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 315 gcactgccagttctggccccagttccgccccatcgggatccaccccgtc 363
||||||||||||| ||||||||||| | ||| ||| ||||||||||||
Sbjct: 14040357 gcactgccagttcgcgccccagttcctcgccagcggtatccaccccgtc 14040405
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 318 ctgccagttctggccccagttccgc 342
|||||||||||||||||||||||||
Sbjct: 23028812 ctgccagttctggccccagttccgc 23028836
Score = 44.1 bits (22), Expect = 0.085
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 303 gaggtcggcgtcgcactgccagttctggccccagttcc 340
||||| ||||| || ||||||||| |||||||||||||
Sbjct: 11514070 gaggtaggcgttgctctgccagttttggccccagttcc 11514107
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 50.1 bits (25), Expect = 0.001
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 282 gaacgacagcggctgggcgcggaggtcggcgtcgcactgccagttctggccccagttccg 341
||||||||||| |||| || ||||| |||| || ||||||||||| |||||||||||
Sbjct: 8249351 gaacgacagcgcctggccggtgaggtacgcgttgctctgccagttctccccccagttccg 8249410
Query: 342 ccccatcgggatccaccccgtcctcgagcccttcacc 378
| ||||| | |||| |||||| ||||||||||||
Sbjct: 8249411 gctcatcgacagccactccgtcccggagcccttcacc 8249447
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 318 ctgccagttctggccccagtt 338
|||||||||||||||||||||
Sbjct: 34637782 ctgccagttctggccccagtt 34637762
>gb|DQ061054.1| Oryza sativa (japonica cultivar-group) alpha-expansin 9 (EXPA9)
mRNA, partial cds
Length = 655
Score = 50.1 bits (25), Expect = 0.001
Identities = 79/97 (81%)
Strand = Plus / Minus
Query: 282 gaacgacagcggctgggcgcggaggtcggcgtcgcactgccagttctggccccagttccg 341
||||||||||| |||| || ||||| |||| || ||||||||||| |||||||||||
Sbjct: 648 gaacgacagcgcctggccggtgaggtacgcgttgctctgccagttctccccccagttccg 589
Query: 342 ccccatcgggatccaccccgtcctcgagcccttcacc 378
| ||||| | |||| |||||| ||||||||||||
Sbjct: 588 gctcatcgacagccactccgtcccggagcccttcacc 552
>gb|DQ061067.1| Oryza sativa (japonica cultivar-group) alpha-expansin 28 (EXPA28)
mRNA, partial cds
Length = 737
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 315 gcactgccagttctggccccagttccgccccatcgggatccaccccgtc 363
||||||||||||| ||||||||||| | ||| ||| ||||||||||||
Sbjct: 619 gcactgccagttcgcgccccagttcctcgccagcggtatccaccccgtc 571
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 50.1 bits (25), Expect = 0.001
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 282 gaacgacagcggctgggcgcggaggtcggcgtcgcactgccagttctggccccagttccg 341
||||||||||| |||| || ||||| |||| || ||||||||||| |||||||||||
Sbjct: 8201027 gaacgacagcgcctggccggtgaggtacgcgttgctctgccagttctccccccagttccg 8201086
Query: 342 ccccatcgggatccaccccgtcctcgagcccttcacc 378
| ||||| | |||| |||||| ||||||||||||
Sbjct: 8201087 gctcatcgacagccactccgtcccggagcccttcacc 8201123
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 318 ctgccagttctggccccagtt 338
|||||||||||||||||||||
Sbjct: 35139962 ctgccagttctggccccagtt 35139942
Score = 42.1 bits (21), Expect = 0.34
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 384 ggccgccacctcgccgtccgccgccacgt 412
|||||||||| ||||| ||||||||||||
Sbjct: 30222829 ggccgccaccgcgccggccgccgccacgt 30222857
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 318 ctgccagttctggccccagttccgc 342
|||||||||||||||||||||||||
Sbjct: 23352495 ctgccagttctggccccagttccgc 23352519
Score = 44.1 bits (22), Expect = 0.085
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 303 gaggtcggcgtcgcactgccagttctggccccagttcc 340
||||| ||||| || ||||||||| |||||||||||||
Sbjct: 11318234 gaggtaggcgttgctctgccagttttggccccagttcc 11318271
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 315 gcactgccagttctggccccagttccgccccatcgggatccaccccgtc 363
||||||||||||| ||||||||||| | ||| ||| ||||||||||||
Sbjct: 15240845 gcactgccagttcgcgccccagttcctcgccagcggtatccaccccgtc 15240893
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 315 gcactgccagttctggccccagttccgccccatcgggatccaccccgtc 363
||||||||||||| ||||||||||| | ||| ||| ||||||||||||
Sbjct: 15249086 gcactgccagttcgcgccccagttcctcgccagcggtatccaccccgtc 15249134
>gb|AC133338.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0031P06, 29 unordered pieces
Length = 132484
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 318 ctgccagttctggccccagttcc 340
|||||||||||||||||||||||
Sbjct: 93489 ctgccagttctggccccagttcc 93467
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 816,964
Number of Sequences: 438736
Number of extensions: 816964
Number of successful extensions: 24698
Number of sequences better than 0.5: 87
Number of HSP's better than 0.5 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22650
Number of HSP's gapped (non-prelim): 2048
length of query: 596
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 575
effective length of database: 2,791,206,460
effective search space: 1604943714500
effective search space used: 1604943714500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)