BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576887.2.1
(1138 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB660432.1|CB660432 OSJNEd02C15.f OSJNEd Oryza sativa (j... 539 e-150
dbj|AK061505.1| Oryza sativa (japonica cultivar-group) cDNA... 539 e-150
dbj|AK065055.1| Oryza sativa (japonica cultivar-group) cDNA... 539 e-150
dbj|AK100403.1| Oryza sativa (japonica cultivar-group) cDNA... 539 e-150
dbj|AK105061.1| Oryza sativa (japonica cultivar-group) cDNA... 539 e-150
dbj|AK121862.1| Oryza sativa (japonica cultivar-group) cDNA... 539 e-150
gb|D21885.1|D21885 RICC10006A Rice callus Oryza sativa (jap... 184 7e-044
gb|AU068229.1|AU068229 AU068229 Rice callus Oryza sativa (j... 184 7e-044
gb|D22272.1|D22272 RICC10648A Rice callus Oryza sativa (jap... 170 1e-039
gb|AACV01002847.1| Oryza sativa (japonica cultivar-group) c... 127 1e-026
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 127 1e-026
dbj|AP003418.2| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
dbj|AP003349.4| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
gb|AU068228.1|AU068228 AU068228 Rice callus Oryza sativa (j... 109 3e-021
gb|D23641.1|D23641 RICC3139A Rice callus Oryza sativa (japo... 94 2e-016
gb|C27853.1|C27853 C27853 Rice callus cDNA Oryza sativa (ja... 44 0.16
dbj|AK102305.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.16
dbj|AP004741.3| Oryza sativa (japonica cultivar-group) geno... 44 0.16
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 44 0.16
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.16
>gb|CB660432.1|CB660432 OSJNEd02C15.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd02C15 5', mRNA sequence
Length = 807
Score = 539 bits (272), Expect = e-150
Identities = 500/576 (86%)
Strand = Plus / Plus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 177 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 236
Query: 210 cacccgccactgctgcgccaccaacggctgctgccgctcggagccgctccagacgttcac 269
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 237 aacccgccactgctgcgccatcaacggatgctgccgctcggagccgctccagacgttcac 296
Query: 270 gatccacgggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcac 329
|||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 297 gatccatgggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacac 356
Query: 330 ccaattcgagatggacaagatattgccactgaaggaggtgcttgacaagtactggccgtc 389
| ||||| ||||||||||||||||| |||||| | |||||| ||||||||||||||
Sbjct: 357 cagcttcgacatggacaagatattgcccctgaagccgacgcttgagaagtactggccgtc 416
Query: 390 cctctactgctccaaatctggaacatgcttcagcggcaagggactcttctgggctcacga 449
|||||||||||| ||| || |||||||| |||||||| | |||||||||||| ||
Sbjct: 417 cctctactgctcatcctcttccacttgcttcagtggcaaggggcccttctgggctcatga 476
Query: 450 gtgggagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcac 509
|||||||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||
Sbjct: 477 gtgggagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcac 536
Query: 510 ccttgcccttgacctctactccaagtataacgttacggaaatgctgtcaagtggagggat 569
| ||| ||||||||||||| ||| || ||||| ||||||||| || ||||||| || ||
Sbjct: 537 cactgctcttgacctctacttcaaatacaacgtcacggaaatgttggcaagtggtggtat 596
Query: 570 acaggtttcaaatggtaaggaatatgcactgagcgatgtcatcgataccatcaaacatgc 629
|| |||||||||||||| ||||||| || | |||||||| ||| |||||||| |||
Sbjct: 597 ccatgtttcaaatggtaaacaatatgcgctaactgatgtcattgatgccatcaaatgtgc 656
Query: 630 ttttgggggatcaccacaaattgtttgcaagaggggttcaatcgaagaacttaggttatg 689
|||||||| ||||| |||||||||||||||| ||| ||| | |||||||| ||||||||
Sbjct: 657 ttttggggcctcaccgcaaattgtttgcaagaagggctcagttgaagaactgaggttatg 716
Query: 690 cttcgacaaagaattgaagcctcgtgattgccttac 725
||| |||||||| |||||||| | ||||||||||||
Sbjct: 717 ctttgacaaagatttgaagccccttgattgccttac 752
>dbj|AK061505.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-E09, full
insert sequence
Length = 1242
Score = 539 bits (272), Expect = e-150
Identities = 500/576 (86%)
Strand = Plus / Plus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 200 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 259
Query: 210 cacccgccactgctgcgccaccaacggctgctgccgctcggagccgctccagacgttcac 269
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 260 aacccgccactgctgcgccatcaacggatgctgccgctcggagccgctccagacgttcac 319
Query: 270 gatccacgggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcac 329
|||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 320 gatccatgggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacac 379
Query: 330 ccaattcgagatggacaagatattgccactgaaggaggtgcttgacaagtactggccgtc 389
| ||||| ||||||||||||||||| |||||| | |||||| ||||||||||||||
Sbjct: 380 cagcttcgacatggacaagatattgcccctgaagccgacgcttgagaagtactggccgtc 439
Query: 390 cctctactgctccaaatctggaacatgcttcagcggcaagggactcttctgggctcacga 449
|||||||||||| ||| || |||||||| |||||||| | |||||||||||| ||
Sbjct: 440 cctctactgctcatcctcttccacttgcttcagtggcaaggggcccttctgggctcatga 499
Query: 450 gtgggagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcac 509
|||||||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||
Sbjct: 500 gtgggagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcac 559
Query: 510 ccttgcccttgacctctactccaagtataacgttacggaaatgctgtcaagtggagggat 569
| ||| ||||||||||||| ||| || ||||| ||||||||| || ||||||| || ||
Sbjct: 560 cactgctcttgacctctacttcaaatacaacgtcacggaaatgttggcaagtggtggtat 619
Query: 570 acaggtttcaaatggtaaggaatatgcactgagcgatgtcatcgataccatcaaacatgc 629
|| |||||||||||||| ||||||| || | |||||||| ||| |||||||| |||
Sbjct: 620 ccatgtttcaaatggtaaacaatatgcgctaactgatgtcattgatgccatcaaatgtgc 679
Query: 630 ttttgggggatcaccacaaattgtttgcaagaggggttcaatcgaagaacttaggttatg 689
|||||||| ||||| |||||||||||||||| ||| ||| | |||||||| ||||||||
Sbjct: 680 ttttggggcctcaccgcaaattgtttgcaagaagggctcagttgaagaactgaggttatg 739
Query: 690 cttcgacaaagaattgaagcctcgtgattgccttac 725
||| |||||||| |||||||| | ||||||||||||
Sbjct: 740 ctttgacaaagatttgaagccccttgattgccttac 775
>dbj|AK065055.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J04, full
insert sequence
Length = 1107
Score = 539 bits (272), Expect = e-150
Identities = 500/576 (86%)
Strand = Plus / Plus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 201 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 260
Query: 210 cacccgccactgctgcgccaccaacggctgctgccgctcggagccgctccagacgttcac 269
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aacccgccactgctgcgccatcaacggatgctgccgctcggagccgctccagacgttcac 320
Query: 270 gatccacgggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcac 329
|||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 321 gatccatgggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacac 380
Query: 330 ccaattcgagatggacaagatattgccactgaaggaggtgcttgacaagtactggccgtc 389
| ||||| ||||||||||||||||| |||||| | |||||| ||||||||||||||
Sbjct: 381 cagcttcgacatggacaagatattgcccctgaagccgacgcttgagaagtactggccgtc 440
Query: 390 cctctactgctccaaatctggaacatgcttcagcggcaagggactcttctgggctcacga 449
|||||||||||| ||| || |||||||| |||||||| | |||||||||||| ||
Sbjct: 441 cctctactgctcatcctcttccacttgcttcagtggcaaggggcccttctgggctcatga 500
Query: 450 gtgggagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcac 509
|||||||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||
Sbjct: 501 gtgggagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcac 560
Query: 510 ccttgcccttgacctctactccaagtataacgttacggaaatgctgtcaagtggagggat 569
| ||| ||||||||||||| ||| || ||||| ||||||||| || ||||||| || ||
Sbjct: 561 cactgctcttgacctctacttcaaatacaacgtcacggaaatgttggcaagtggtggtat 620
Query: 570 acaggtttcaaatggtaaggaatatgcactgagcgatgtcatcgataccatcaaacatgc 629
|| |||||||||||||| ||||||| || | |||||||| ||| |||||||| |||
Sbjct: 621 ccatgtttcaaatggtaaacaatatgcgctaactgatgtcattgatgccatcaaatgtgc 680
Query: 630 ttttgggggatcaccacaaattgtttgcaagaggggttcaatcgaagaacttaggttatg 689
|||||||| ||||| |||||||||||||||| ||| ||| | |||||||| ||||||||
Sbjct: 681 ttttggggcctcaccgcaaattgtttgcaagaagggctcagttgaagaactgaggttatg 740
Query: 690 cttcgacaaagaattgaagcctcgtgattgccttac 725
||| |||||||| |||||||| | ||||||||||||
Sbjct: 741 ctttgacaaagatttgaagccccttgattgccttac 776
>dbj|AK100403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086O14, full
insert sequence
Length = 1222
Score = 539 bits (272), Expect = e-150
Identities = 500/576 (86%)
Strand = Plus / Plus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 192 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 251
Query: 210 cacccgccactgctgcgccaccaacggctgctgccgctcggagccgctccagacgttcac 269
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 252 aacccgccactgctgcgccatcaacggatgctgccgctcggagccgctccagacgttcac 311
Query: 270 gatccacgggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcac 329
|||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 312 gatccatgggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacac 371
Query: 330 ccaattcgagatggacaagatattgccactgaaggaggtgcttgacaagtactggccgtc 389
| ||||| ||||||||||||||||| |||||| | |||||| ||||||||||||||
Sbjct: 372 cagcttcgacatggacaagatattgcccctgaagccgacgcttgagaagtactggccgtc 431
Query: 390 cctctactgctccaaatctggaacatgcttcagcggcaagggactcttctgggctcacga 449
|||||||||||| ||| || |||||||| |||||||| | |||||||||||| ||
Sbjct: 432 cctctactgctcatcctcttccacttgcttcagtggcaaggggcccttctgggctcatga 491
Query: 450 gtgggagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcac 509
|||||||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||
Sbjct: 492 gtgggagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcac 551
Query: 510 ccttgcccttgacctctactccaagtataacgttacggaaatgctgtcaagtggagggat 569
| ||| ||||||||||||| ||| || ||||| ||||||||| || ||||||| || ||
Sbjct: 552 cactgctcttgacctctacttcaaatacaacgtcacggaaatgttggcaagtggtggtat 611
Query: 570 acaggtttcaaatggtaaggaatatgcactgagcgatgtcatcgataccatcaaacatgc 629
|| |||||||||||||| ||||||| || | |||||||| ||| |||||||| |||
Sbjct: 612 ccatgtttcaaatggtaaacaatatgcgctaactgatgtcattgatgccatcaaatgtgc 671
Query: 630 ttttgggggatcaccacaaattgtttgcaagaggggttcaatcgaagaacttaggttatg 689
|||||||| ||||| |||||||||||||||| ||| ||| | |||||||| ||||||||
Sbjct: 672 ttttggggcctcaccgcaaattgtttgcaagaagggctcagttgaagaactgaggttatg 731
Query: 690 cttcgacaaagaattgaagcctcgtgattgccttac 725
||| |||||||| |||||||| | ||||||||||||
Sbjct: 732 ctttgacaaagatttgaagccccttgattgccttac 767
>dbj|AK105061.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-H09, full
insert sequence
Length = 1245
Score = 539 bits (272), Expect = e-150
Identities = 500/576 (86%)
Strand = Plus / Plus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 202 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 261
Query: 210 cacccgccactgctgcgccaccaacggctgctgccgctcggagccgctccagacgttcac 269
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 262 aacccgccactgctgcgccatcaacggatgctgccgctcggagccgctccagacgttcac 321
Query: 270 gatccacgggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcac 329
|||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 322 gatccatgggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacac 381
Query: 330 ccaattcgagatggacaagatattgccactgaaggaggtgcttgacaagtactggccgtc 389
| ||||| ||||||||||||||||| |||||| | |||||| ||||||||||||||
Sbjct: 382 cagcttcgacatggacaagatattgcccctgaagccgacgcttgagaagtactggccgtc 441
Query: 390 cctctactgctccaaatctggaacatgcttcagcggcaagggactcttctgggctcacga 449
|||||||||||| ||| || |||||||| |||||||| | |||||||||||| ||
Sbjct: 442 cctctactgctcatcctcttccacttgcttcagtggcaaggggcccttctgggctcatga 501
Query: 450 gtgggagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcac 509
|||||||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||
Sbjct: 502 gtgggagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcac 561
Query: 510 ccttgcccttgacctctactccaagtataacgttacggaaatgctgtcaagtggagggat 569
| ||| ||||||||||||| ||| || ||||| ||||||||| || ||||||| || ||
Sbjct: 562 cactgctcttgacctctacttcaaatacaacgtcacggaaatgttggcaagtggtggtat 621
Query: 570 acaggtttcaaatggtaaggaatatgcactgagcgatgtcatcgataccatcaaacatgc 629
|| |||||||||||||| ||||||| || | |||||||| ||| |||||||| |||
Sbjct: 622 ccatgtttcaaatggtaaacaatatgcgctaactgatgtcattgatgccatcaaatgtgc 681
Query: 630 ttttgggggatcaccacaaattgtttgcaagaggggttcaatcgaagaacttaggttatg 689
|||||||| ||||| |||||||||||||||| ||| ||| | |||||||| ||||||||
Sbjct: 682 ttttggggcctcaccgcaaattgtttgcaagaagggctcagttgaagaactgaggttatg 741
Query: 690 cttcgacaaagaattgaagcctcgtgattgccttac 725
||| |||||||| |||||||| | ||||||||||||
Sbjct: 742 ctttgacaaagatttgaagccccttgattgccttac 777
>dbj|AK121862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103A19, full
insert sequence
Length = 1113
Score = 539 bits (272), Expect = e-150
Identities = 500/576 (86%)
Strand = Plus / Plus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 172 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 231
Query: 210 cacccgccactgctgcgccaccaacggctgctgccgctcggagccgctccagacgttcac 269
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 232 aacccgccactgctgcgccatcaacggatgctgccgctcggagccgctccagacgttcac 291
Query: 270 gatccacgggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcac 329
|||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 292 gatccatgggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacac 351
Query: 330 ccaattcgagatggacaagatattgccactgaaggaggtgcttgacaagtactggccgtc 389
| ||||| ||||||||||||||||| |||||| | |||||| ||||||||||||||
Sbjct: 352 cagcttcgacatggacaagatattgcccctgaagccgacgcttgagaagtactggccgtc 411
Query: 390 cctctactgctccaaatctggaacatgcttcagcggcaagggactcttctgggctcacga 449
|||||||||||| ||| || |||||||| |||||||| | |||||||||||| ||
Sbjct: 412 cctctactgctcatcctcttccacttgcttcagtggcaaggggcccttctgggctcatga 471
Query: 450 gtgggagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcac 509
|||||||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||
Sbjct: 472 gtgggagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcac 531
Query: 510 ccttgcccttgacctctactccaagtataacgttacggaaatgctgtcaagtggagggat 569
| ||| ||||||||||||| ||| || ||||| ||||||||| || ||||||| || ||
Sbjct: 532 cactgctcttgacctctacttcaaatacaacgtcacggaaatgttggcaagtggtggtat 591
Query: 570 acaggtttcaaatggtaaggaatatgcactgagcgatgtcatcgataccatcaaacatgc 629
|| |||||||||||||| ||||||| || | |||||||| ||| |||||||| |||
Sbjct: 592 ccatgtttcaaatggtaaacaatatgcgctaactgatgtcattgatgccatcaaatgtgc 651
Query: 630 ttttgggggatcaccacaaattgtttgcaagaggggttcaatcgaagaacttaggttatg 689
|||||||| ||||| |||||||||||||||| ||| ||| | |||||||| ||||||||
Sbjct: 652 ttttggggcctcaccgcaaattgtttgcaagaagggctcagttgaagaactgaggttatg 711
Query: 690 cttcgacaaagaattgaagcctcgtgattgccttac 725
||| |||||||| |||||||| | ||||||||||||
Sbjct: 712 ctttgacaaagatttgaagccccttgattgccttac 747
>gb|D21885.1|D21885 RICC10006A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10006_1A, mRNA sequence
Length = 351
Score = 184 bits (93), Expect = 7e-044
Identities = 142/159 (89%), Gaps = 1/159 (0%)
Strand = Plus / Plus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 192 gcagcgggagttcgactacttcgcgctgncgctgcagtggcctggcaccatctgcgcctc 251
Query: 210 cacccgccactgctgcgccaccaacggctgctgccgctcggagccgctcc-agacgttca 268
||||| ||||||| || || ||||| ||||| ||||||||| |||||| |||||||||
Sbjct: 252 aacccgncactgctncgncatcaacgnatgctgncgctcggagacgctccaagacgttca 311
Query: 269 cgatccacgggctatggccggactacgacgacgggacct 307
||||||| ||||| |||||||||||||||||||||||||
Sbjct: 312 cgatccatgggctgtggccggactacgacgacgggacct 350
>gb|AU068229.1|AU068229 AU068229 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12589_2A, mRNA sequence
Length = 427
Score = 184 bits (93), Expect = 7e-044
Identities = 153/172 (88%), Gaps = 2/172 (1%)
Strand = Plus / Plus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | | ||| ||| |||||||||| ||||||
Sbjct: 191 gcagcgggagttcgactacttcgcgctggctgnc-agtngcctggcaccatctncgcctc 249
Query: 210 cacccgccactgctgcgccaccaacggctgctgccgctcggagccgctccagacgttcac 269
|||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct: 250 aacccgccactgctgcgncatcaacggatgctgccgctcggagccgctccagacgttcac 309
Query: 270 gatccacgggctatggccggactacgacgacgggacctggccgtcgtgctgc 321
|||||| ||||| ||| ||||||||||||||||||||| |||| ||| ||||
Sbjct: 310 gatccatgggctgtgg-cggactacgacgacgggacctngccggcgttctgc 360
>gb|D22272.1|D22272 RICC10648A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10648_1A, mRNA sequence
Length = 336
Score = 170 bits (86), Expect = 1e-039
Identities = 133/148 (89%), Gaps = 1/148 (0%)
Strand = Plus / Plus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 189 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 248
Query: 210 cacccgccactgctgcgccaccaacggctgctgccgctcggagccgctccagacgttcac 269
|||||||| |||||||||| |||||| |||||||||||||||||| | |||||||||||
Sbjct: 249 aacccgccaatgctgcgccatcaacggatgctgccgctcggagccgntncagacgttcac 308
Query: 270 gatccacgggc-tatggccggactacga 296
|||||| ||| | ||||||||||||||
Sbjct: 309 gatccattggcttttggccggactacga 336
>gb|AACV01002847.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002847, whole
genome shotgun sequence
Length = 99512
Score = 127 bits (64), Expect = 1e-026
Identities = 88/96 (91%)
Strand = Plus / Plus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 89966 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 90025
Query: 210 cacccgccactgctgcgccaccaacggctgctgccg 245
||||||||||||||||||| |||||| ||||||||
Sbjct: 90026 aacccgccactgctgcgccatcaacggatgctgccg 90061
Score = 117 bits (59), Expect = 1e-023
Identities = 137/163 (84%)
Strand = Plus / Plus
Query: 546 ggaaatgctgtcaagtggagggatacaggtttcaaatggtaaggaatatgcactgagcga 605
||||||| || ||||||| || || || |||||||||||||| ||||||| || | ||
Sbjct: 91303 ggaaatgttggcaagtggtggtatccatgtttcaaatggtaaacaatatgcgctaactga 91362
Query: 606 tgtcatcgataccatcaaacatgcttttgggggatcaccacaaattgtttgcaagagggg 665
|||||| ||| |||||||| ||||||||||| ||||| |||||||||||||||| |||
Sbjct: 91363 tgtcattgatgccatcaaatgtgcttttggggcctcaccgcaaattgtttgcaagaaggg 91422
Query: 666 ttcaatcgaagaacttaggttatgcttcgacaaagaattgaag 708
||| | |||||||| ||||||||||| |||||||| ||||||
Sbjct: 91423 ctcagttgaagaactgaggttatgctttgacaaagatttgaag 91465
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 277 gggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcacccaattc 336
||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 90383 gggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacaccagcttc 90442
Query: 337 gagatggacaag 348
|| |||||||||
Sbjct: 90443 gacatggacaag 90454
Score = 75.8 bits (38), Expect = 5e-011
Identities = 80/94 (85%)
Strand = Plus / Plus
Query: 454 gagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcaccctt 513
|||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||| |
Sbjct: 90999 gagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcaccact 91058
Query: 514 gcccttgacctctactccaagtataacgttacgg 547
|| ||||||||||||| ||| || ||||| ||||
Sbjct: 91059 gctcttgacctctacttcaaatacaacgtcacgg 91092
Score = 63.9 bits (32), Expect = 2e-007
Identities = 83/100 (83%)
Strand = Plus / Plus
Query: 347 agatattgccactgaaggaggtgcttgacaagtactggccgtccctctactgctccaaat 406
|||||||||| |||||| | |||||| |||||||||||||||||||||||||| |
Sbjct: 90599 agatattgcccctgaagccgacgcttgagaagtactggccgtccctctactgctcatcct 90658
Query: 407 ctggaacatgcttcagcggcaagggactcttctgggctca 446
|| || |||||||| |||||||| | ||||||||||||
Sbjct: 90659 cttccacttgcttcagtggcaaggggcccttctgggctca 90698
Score = 60.0 bits (30), Expect = 3e-006
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 245 gctcggagccgctccagacgttcacgatcc 274
||||||||||||||||||||||||||||||
Sbjct: 90211 gctcggagccgctccagacgttcacgatcc 90240
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 127 bits (64), Expect = 1e-026
Identities = 88/96 (91%)
Strand = Plus / Minus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 39067531 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 39067472
Query: 210 cacccgccactgctgcgccaccaacggctgctgccg 245
||||||||||||||||||| |||||| ||||||||
Sbjct: 39067471 aacccgccactgctgcgccatcaacggatgctgccg 39067436
Score = 117 bits (59), Expect = 1e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 546 ggaaatgctgtcaagtggagggatacaggtttcaaatggtaaggaatatgcactgagcga 605
||||||| || ||||||| || || || |||||||||||||| ||||||| || | ||
Sbjct: 39066194 ggaaatgttggcaagtggtggtatccatgtttcaaatggtaaacaatatgcgctaactga 39066135
Query: 606 tgtcatcgataccatcaaacatgcttttgggggatcaccacaaattgtttgcaagagggg 665
|||||| ||| |||||||| ||||||||||| ||||| |||||||||||||||| |||
Sbjct: 39066134 tgtcattgatgccatcaaatgtgcttttggggcctcaccgcaaattgtttgcaagaaggg 39066075
Query: 666 ttcaatcgaagaacttaggttatgcttcgacaaagaattgaag 708
||| | |||||||| ||||||||||| |||||||| ||||||
Sbjct: 39066074 ctcagttgaagaactgaggttatgctttgacaaagatttgaag 39066032
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 277 gggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcacccaattc 336
||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 39067114 gggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacaccagcttc 39067055
Query: 337 gagatggacaag 348
|| |||||||||
Sbjct: 39067054 gacatggacaag 39067043
Score = 75.8 bits (38), Expect = 5e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 454 gagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcaccctt 513
|||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||| |
Sbjct: 39066498 gagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcaccact 39066439
Query: 514 gcccttgacctctactccaagtataacgttacgg 547
|| ||||||||||||| ||| || ||||| ||||
Sbjct: 39066438 gctcttgacctctacttcaaatacaacgtcacgg 39066405
Score = 63.9 bits (32), Expect = 2e-007
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 347 agatattgccactgaaggaggtgcttgacaagtactggccgtccctctactgctccaaat 406
|||||||||| |||||| | |||||| |||||||||||||||||||||||||| |
Sbjct: 39066898 agatattgcccctgaagccgacgcttgagaagtactggccgtccctctactgctcatcct 39066839
Query: 407 ctggaacatgcttcagcggcaagggactcttctgggctca 446
|| || |||||||| |||||||| | ||||||||||||
Sbjct: 39066838 cttccacttgcttcagtggcaaggggcccttctgggctca 39066799
Score = 60.0 bits (30), Expect = 3e-006
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 245 gctcggagccgctccagacgttcacgatcc 274
||||||||||||||||||||||||||||||
Sbjct: 39067286 gctcggagccgctccagacgttcacgatcc 39067257
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 127 bits (64), Expect = 1e-026
Identities = 88/96 (91%)
Strand = Plus / Minus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 13514914 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 13514855
Query: 210 cacccgccactgctgcgccaccaacggctgctgccg 245
||||||||||||||||||| |||||| ||||||||
Sbjct: 13514854 aacccgccactgctgcgccatcaacggatgctgccg 13514819
Score = 117 bits (59), Expect = 1e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 546 ggaaatgctgtcaagtggagggatacaggtttcaaatggtaaggaatatgcactgagcga 605
||||||| || ||||||| || || || |||||||||||||| ||||||| || | ||
Sbjct: 13513577 ggaaatgttggcaagtggtggtatccatgtttcaaatggtaaacaatatgcgctaactga 13513518
Query: 606 tgtcatcgataccatcaaacatgcttttgggggatcaccacaaattgtttgcaagagggg 665
|||||| ||| |||||||| ||||||||||| ||||| |||||||||||||||| |||
Sbjct: 13513517 tgtcattgatgccatcaaatgtgcttttggggcctcaccgcaaattgtttgcaagaaggg 13513458
Query: 666 ttcaatcgaagaacttaggttatgcttcgacaaagaattgaag 708
||| | |||||||| ||||||||||| |||||||| ||||||
Sbjct: 13513457 ctcagttgaagaactgaggttatgctttgacaaagatttgaag 13513415
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 277 gggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcacccaattc 336
||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 13514497 gggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacaccagcttc 13514438
Query: 337 gagatggacaag 348
|| |||||||||
Sbjct: 13514437 gacatggacaag 13514426
Score = 75.8 bits (38), Expect = 5e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 454 gagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcaccctt 513
|||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||| |
Sbjct: 13513881 gagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcaccact 13513822
Query: 514 gcccttgacctctactccaagtataacgttacgg 547
|| ||||||||||||| ||| || ||||| ||||
Sbjct: 13513821 gctcttgacctctacttcaaatacaacgtcacgg 13513788
Score = 63.9 bits (32), Expect = 2e-007
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 347 agatattgccactgaaggaggtgcttgacaagtactggccgtccctctactgctccaaat 406
|||||||||| |||||| | |||||| |||||||||||||||||||||||||| |
Sbjct: 13514281 agatattgcccctgaagccgacgcttgagaagtactggccgtccctctactgctcatcct 13514222
Query: 407 ctggaacatgcttcagcggcaagggactcttctgggctca 446
|| || |||||||| |||||||| | ||||||||||||
Sbjct: 13514221 cttccacttgcttcagtggcaaggggcccttctgggctca 13514182
Score = 60.0 bits (30), Expect = 3e-006
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 245 gctcggagccgctccagacgttcacgatcc 274
||||||||||||||||||||||||||||||
Sbjct: 13514669 gctcggagccgctccagacgttcacgatcc 13514640
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0506A10
Length = 145265
Score = 127 bits (64), Expect = 1e-026
Identities = 88/96 (91%)
Strand = Plus / Minus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 4841 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 4782
Query: 210 cacccgccactgctgcgccaccaacggctgctgccg 245
||||||||||||||||||| |||||| ||||||||
Sbjct: 4781 aacccgccactgctgcgccatcaacggatgctgccg 4746
Score = 117 bits (59), Expect = 1e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 546 ggaaatgctgtcaagtggagggatacaggtttcaaatggtaaggaatatgcactgagcga 605
||||||| || ||||||| || || || |||||||||||||| ||||||| || | ||
Sbjct: 3504 ggaaatgttggcaagtggtggtatccatgtttcaaatggtaaacaatatgcgctaactga 3445
Query: 606 tgtcatcgataccatcaaacatgcttttgggggatcaccacaaattgtttgcaagagggg 665
|||||| ||| |||||||| ||||||||||| ||||| |||||||||||||||| |||
Sbjct: 3444 tgtcattgatgccatcaaatgtgcttttggggcctcaccgcaaattgtttgcaagaaggg 3385
Query: 666 ttcaatcgaagaacttaggttatgcttcgacaaagaattgaag 708
||| | |||||||| ||||||||||| |||||||| ||||||
Sbjct: 3384 ctcagttgaagaactgaggttatgctttgacaaagatttgaag 3342
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 277 gggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcacccaattc 336
||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 4424 gggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacaccagcttc 4365
Query: 337 gagatggacaag 348
|| |||||||||
Sbjct: 4364 gacatggacaag 4353
Score = 75.8 bits (38), Expect = 5e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 454 gagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcaccctt 513
|||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||| |
Sbjct: 3808 gagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcaccact 3749
Query: 514 gcccttgacctctactccaagtataacgttacgg 547
|| ||||||||||||| ||| || ||||| ||||
Sbjct: 3748 gctcttgacctctacttcaaatacaacgtcacgg 3715
Score = 63.9 bits (32), Expect = 2e-007
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 347 agatattgccactgaaggaggtgcttgacaagtactggccgtccctctactgctccaaat 406
|||||||||| |||||| | |||||| |||||||||||||||||||||||||| |
Sbjct: 4208 agatattgcccctgaagccgacgcttgagaagtactggccgtccctctactgctcatcct 4149
Query: 407 ctggaacatgcttcagcggcaagggactcttctgggctca 446
|| || |||||||| |||||||| | ||||||||||||
Sbjct: 4148 cttccacttgcttcagtggcaaggggcccttctgggctca 4109
Score = 60.0 bits (30), Expect = 3e-006
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 245 gctcggagccgctccagacgttcacgatcc 274
||||||||||||||||||||||||||||||
Sbjct: 4596 gctcggagccgctccagacgttcacgatcc 4567
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0674H09
Length = 142955
Score = 127 bits (64), Expect = 1e-026
Identities = 88/96 (91%)
Strand = Plus / Minus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 60494 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 60435
Query: 210 cacccgccactgctgcgccaccaacggctgctgccg 245
||||||||||||||||||| |||||| ||||||||
Sbjct: 60434 aacccgccactgctgcgccatcaacggatgctgccg 60399
Score = 117 bits (59), Expect = 1e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 546 ggaaatgctgtcaagtggagggatacaggtttcaaatggtaaggaatatgcactgagcga 605
||||||| || ||||||| || || || |||||||||||||| ||||||| || | ||
Sbjct: 59157 ggaaatgttggcaagtggtggtatccatgtttcaaatggtaaacaatatgcgctaactga 59098
Query: 606 tgtcatcgataccatcaaacatgcttttgggggatcaccacaaattgtttgcaagagggg 665
|||||| ||| |||||||| ||||||||||| ||||| |||||||||||||||| |||
Sbjct: 59097 tgtcattgatgccatcaaatgtgcttttggggcctcaccgcaaattgtttgcaagaaggg 59038
Query: 666 ttcaatcgaagaacttaggttatgcttcgacaaagaattgaag 708
||| | |||||||| ||||||||||| |||||||| ||||||
Sbjct: 59037 ctcagttgaagaactgaggttatgctttgacaaagatttgaag 58995
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 277 gggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcacccaattc 336
||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 60077 gggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacaccagcttc 60018
Query: 337 gagatggacaag 348
|| |||||||||
Sbjct: 60017 gacatggacaag 60006
Score = 75.8 bits (38), Expect = 5e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 454 gagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcaccctt 513
|||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||| |
Sbjct: 59461 gagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcaccact 59402
Query: 514 gcccttgacctctactccaagtataacgttacgg 547
|| ||||||||||||| ||| || ||||| ||||
Sbjct: 59401 gctcttgacctctacttcaaatacaacgtcacgg 59368
Score = 63.9 bits (32), Expect = 2e-007
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 347 agatattgccactgaaggaggtgcttgacaagtactggccgtccctctactgctccaaat 406
|||||||||| |||||| | |||||| |||||||||||||||||||||||||| |
Sbjct: 59861 agatattgcccctgaagccgacgcttgagaagtactggccgtccctctactgctcatcct 59802
Query: 407 ctggaacatgcttcagcggcaagggactcttctgggctca 446
|| || |||||||| |||||||| | ||||||||||||
Sbjct: 59801 cttccacttgcttcagtggcaaggggcccttctgggctca 59762
Score = 60.0 bits (30), Expect = 3e-006
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 245 gctcggagccgctccagacgttcacgatcc 274
||||||||||||||||||||||||||||||
Sbjct: 60249 gctcggagccgctccagacgttcacgatcc 60220
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 127 bits (64), Expect = 1e-026
Identities = 88/96 (91%)
Strand = Plus / Minus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 13233428 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 13233369
Query: 210 cacccgccactgctgcgccaccaacggctgctgccg 245
||||||||||||||||||| |||||| ||||||||
Sbjct: 13233368 aacccgccactgctgcgccatcaacggatgctgccg 13233333
Score = 117 bits (59), Expect = 1e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 546 ggaaatgctgtcaagtggagggatacaggtttcaaatggtaaggaatatgcactgagcga 605
||||||| || ||||||| || || || |||||||||||||| ||||||| || | ||
Sbjct: 13232091 ggaaatgttggcaagtggtggtatccatgtttcaaatggtaaacaatatgcgctaactga 13232032
Query: 606 tgtcatcgataccatcaaacatgcttttgggggatcaccacaaattgtttgcaagagggg 665
|||||| ||| |||||||| ||||||||||| ||||| |||||||||||||||| |||
Sbjct: 13232031 tgtcattgatgccatcaaatgtgcttttggggcctcaccgcaaattgtttgcaagaaggg 13231972
Query: 666 ttcaatcgaagaacttaggttatgcttcgacaaagaattgaag 708
||| | |||||||| ||||||||||| |||||||| ||||||
Sbjct: 13231971 ctcagttgaagaactgaggttatgctttgacaaagatttgaag 13231929
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 277 gggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcacccaattc 336
||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 13233011 gggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacaccagcttc 13232952
Query: 337 gagatggacaag 348
|| |||||||||
Sbjct: 13232951 gacatggacaag 13232940
Score = 75.8 bits (38), Expect = 5e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 454 gagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcaccctt 513
|||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||| |
Sbjct: 13232395 gagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcaccact 13232336
Query: 514 gcccttgacctctactccaagtataacgttacgg 547
|| ||||||||||||| ||| || ||||| ||||
Sbjct: 13232335 gctcttgacctctacttcaaatacaacgtcacgg 13232302
Score = 63.9 bits (32), Expect = 2e-007
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 347 agatattgccactgaaggaggtgcttgacaagtactggccgtccctctactgctccaaat 406
|||||||||| |||||| | |||||| |||||||||||||||||||||||||| |
Sbjct: 13232795 agatattgcccctgaagccgacgcttgagaagtactggccgtccctctactgctcatcct 13232736
Query: 407 ctggaacatgcttcagcggcaagggactcttctgggctca 446
|| || |||||||| |||||||| | ||||||||||||
Sbjct: 13232735 cttccacttgcttcagtggcaaggggcccttctgggctca 13232696
Score = 60.0 bits (30), Expect = 3e-006
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 245 gctcggagccgctccagacgttcacgatcc 274
||||||||||||||||||||||||||||||
Sbjct: 13233183 gctcggagccgctccagacgttcacgatcc 13233154
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 127 bits (64), Expect = 1e-026
Identities = 88/96 (91%)
Strand = Plus / Minus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 38435149 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 38435090
Query: 210 cacccgccactgctgcgccaccaacggctgctgccg 245
||||||||||||||||||| |||||| ||||||||
Sbjct: 38435089 aacccgccactgctgcgccatcaacggatgctgccg 38435054
Score = 117 bits (59), Expect = 1e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 546 ggaaatgctgtcaagtggagggatacaggtttcaaatggtaaggaatatgcactgagcga 605
||||||| || ||||||| || || || |||||||||||||| ||||||| || | ||
Sbjct: 38433812 ggaaatgttggcaagtggtggtatccatgtttcaaatggtaaacaatatgcgctaactga 38433753
Query: 606 tgtcatcgataccatcaaacatgcttttgggggatcaccacaaattgtttgcaagagggg 665
|||||| ||| |||||||| ||||||||||| ||||| |||||||||||||||| |||
Sbjct: 38433752 tgtcattgatgccatcaaatgtgcttttggggcctcaccgcaaattgtttgcaagaaggg 38433693
Query: 666 ttcaatcgaagaacttaggttatgcttcgacaaagaattgaag 708
||| | |||||||| ||||||||||| |||||||| ||||||
Sbjct: 38433692 ctcagttgaagaactgaggttatgctttgacaaagatttgaag 38433650
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 277 gggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcacccaattc 336
||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 38434732 gggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacaccagcttc 38434673
Query: 337 gagatggacaag 348
|| |||||||||
Sbjct: 38434672 gacatggacaag 38434661
Score = 75.8 bits (38), Expect = 5e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 454 gagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcaccctt 513
|||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||| |
Sbjct: 38434116 gagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcaccact 38434057
Query: 514 gcccttgacctctactccaagtataacgttacgg 547
|| ||||||||||||| ||| || ||||| ||||
Sbjct: 38434056 gctcttgacctctacttcaaatacaacgtcacgg 38434023
Score = 63.9 bits (32), Expect = 2e-007
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 347 agatattgccactgaaggaggtgcttgacaagtactggccgtccctctactgctccaaat 406
|||||||||| |||||| | |||||| |||||||||||||||||||||||||| |
Sbjct: 38434516 agatattgcccctgaagccgacgcttgagaagtactggccgtccctctactgctcatcct 38434457
Query: 407 ctggaacatgcttcagcggcaagggactcttctgggctca 446
|| || |||||||| |||||||| | ||||||||||||
Sbjct: 38434456 cttccacttgcttcagtggcaaggggcccttctgggctca 38434417
Score = 60.0 bits (30), Expect = 3e-006
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 245 gctcggagccgctccagacgttcacgatcc 274
||||||||||||||||||||||||||||||
Sbjct: 38434904 gctcggagccgctccagacgttcacgatcc 38434875
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 127 bits (64), Expect = 1e-026
Identities = 88/96 (91%)
Strand = Plus / Minus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct: 38986861 gcagcgggagttcgactacttcgcgctggcgctgcagtggcctggcaccatctgcgcctc 38986802
Query: 210 cacccgccactgctgcgccaccaacggctgctgccg 245
||||||||||||||||||| |||||| ||||||||
Sbjct: 38986801 aacccgccactgctgcgccatcaacggatgctgccg 38986766
Score = 117 bits (59), Expect = 1e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 546 ggaaatgctgtcaagtggagggatacaggtttcaaatggtaaggaatatgcactgagcga 605
||||||| || ||||||| || || || |||||||||||||| ||||||| || | ||
Sbjct: 38985524 ggaaatgttggcaagtggtggtatccatgtttcaaatggtaaacaatatgcgctaactga 38985465
Query: 606 tgtcatcgataccatcaaacatgcttttgggggatcaccacaaattgtttgcaagagggg 665
|||||| ||| |||||||| ||||||||||| ||||| |||||||||||||||| |||
Sbjct: 38985464 tgtcattgatgccatcaaatgtgcttttggggcctcaccgcaaattgtttgcaagaaggg 38985405
Query: 666 ttcaatcgaagaacttaggttatgcttcgacaaagaattgaag 708
||| | |||||||| ||||||||||| |||||||| ||||||
Sbjct: 38985404 ctcagttgaagaactgaggttatgctttgacaaagatttgaag 38985362
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 277 gggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcacccaattc 336
||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 38986444 gggctgtggccggactacgacgacgggacctggccggcgtgctgccgccacaccagcttc 38986385
Query: 337 gagatggacaag 348
|| |||||||||
Sbjct: 38986384 gacatggacaag 38986373
Score = 75.8 bits (38), Expect = 5e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 454 gagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcaccctt 513
|||||||||||||| ||||| |||| || ||| ||||||||||| ||||||||||| |
Sbjct: 38985828 gagaaacatggaacatgctcatccccggtagttaaggatgaattagagtatttcaccact 38985769
Query: 514 gcccttgacctctactccaagtataacgttacgg 547
|| ||||||||||||| ||| || ||||| ||||
Sbjct: 38985768 gctcttgacctctacttcaaatacaacgtcacgg 38985735
Score = 63.9 bits (32), Expect = 2e-007
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 347 agatattgccactgaaggaggtgcttgacaagtactggccgtccctctactgctccaaat 406
|||||||||| |||||| | |||||| |||||||||||||||||||||||||| |
Sbjct: 38986228 agatattgcccctgaagccgacgcttgagaagtactggccgtccctctactgctcatcct 38986169
Query: 407 ctggaacatgcttcagcggcaagggactcttctgggctca 446
|| || |||||||| |||||||| | ||||||||||||
Sbjct: 38986168 cttccacttgcttcagtggcaaggggcccttctgggctca 38986129
Score = 60.0 bits (30), Expect = 3e-006
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 245 gctcggagccgctccagacgttcacgatcc 274
||||||||||||||||||||||||||||||
Sbjct: 38986616 gctcggagccgctccagacgttcacgatcc 38986587
>gb|AU068228.1|AU068228 AU068228 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12589_12Z, mRNA sequence
Length = 571
Score = 109 bits (55), Expect = 3e-021
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 604 gatgtcatcgataccatcaaacatgcttttgggggatcaccacaaattgtttgcaagagg 663
|||| ||| ||| |||||||| ||||||||||| ||||| |||||||||||||||| |
Sbjct: 12 gatgncattgatgccatcaaatgtgcttttggggcctcaccgcaaattgtttgcaagaag 71
Query: 664 ggttcaatcgaagaacttaggttatgcttcgacaaagaattgaagcctcgtgattgcctt 723
|| ||| | |||||||| ||||||||||| |||||||| |||||||| | ||||||||||
Sbjct: 72 ggctcagttgaagaactgaggttatgctttgacaaagatttgaagccccttgattgcctt 131
Query: 724 ac 725
||
Sbjct: 132 ac 133
>gb|D23641.1|D23641 RICC3139A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C3139_1A, mRNA sequence
Length = 228
Score = 93.7 bits (47), Expect = 2e-016
Identities = 88/103 (85%)
Strand = Plus / Plus
Query: 294 cgacgacgggacctggccgtcgtgctgccgccgcacccaattcgagatggacaagatatt 353
||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||
Sbjct: 1 cgacgacgggacctggccggngtgctgccgccanaccagcttcgacatggacaagatatt 60
Query: 354 gccactgaaggaggtgcttgacaagtactggccgtccctctac 396
||| |||||| | |||||| ||||||||| |||||||||||
Sbjct: 61 gcccctgaagccgncgcttgagaagtactggncgtccctctac 103
Score = 89.7 bits (45), Expect = 3e-015
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 415 tgcttcagcggcaagggactcttctgggctcacgagtgggagaaacatggaacctgctct 474
|||||||| ||||||| | |||||||||||| |||| ||||||||||||||| |||||
Sbjct: 123 tgcttcagtngcaaggggcccttctgggctcatgagtaggagaaacatggaacatgctca 182
Query: 475 gcccctgtggttcaggatgaattacagtatttcacc 510
|||| || ||| ||||||||||| |||||||||||
Sbjct: 183 tccccggtagttaaggatgaattagagtatttcacc 218
>gb|C27853.1|C27853 C27853 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53229_1A, mRNA sequence
Length = 457
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttcgactacttcgcgctctccc 181
||||||||||||||||||||||
Sbjct: 13 ttcgactacttcgcgctctccc 34
>dbj|AK102305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089P03, full
insert sequence
Length = 1066
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttcgactacttcgcgctctccc 181
||||||||||||||||||||||
Sbjct: 251 ttcgactacttcgcgctctccc 272
>dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0024N18
Length = 128739
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 160 ttcgactacttcgcgctctccc 181
||||||||||||||||||||||
Sbjct: 112909 ttcgactacttcgcgctctccc 112888
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 160 ttcgactacttcgcgctctccc 181
||||||||||||||||||||||
Sbjct: 1682837 ttcgactacttcgcgctctccc 1682816
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 160 ttcgactacttcgcgctctccc 181
||||||||||||||||||||||
Sbjct: 5991257 ttcgactacttcgcgctctccc 5991236
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,627,321
Number of Sequences: 438736
Number of extensions: 1627321
Number of successful extensions: 11925
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11638
Number of HSP's gapped (non-prelim): 284
length of query: 1138
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1117
effective length of database: 2,791,206,460
effective search space: 3117777615820
effective search space used: 3117777615820
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)