BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576652.2.4
(870 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF332241.1|CF332241 NACL--08-K19.g1 Rice callus plasmid ... 402 e-109
dbj|AK071238.1| Oryza sativa (japonica cultivar-group) cDNA... 402 e-109
gb|AU075641.1|AU075641 AU075641 Rice panicle at flowering s... 392 e-106
dbj|AK058911.1| Oryza sativa (japonica cultivar-group) cDNA... 392 e-106
dbj|AK102635.1| Oryza sativa (japonica cultivar-group) cDNA... 392 e-106
dbj|AK106215.1| Oryza sativa (japonica cultivar-group) cDNA... 392 e-106
dbj|AK111407.1| Oryza sativa (japonica cultivar-group) cDNA... 392 e-106
gb|CV731889.1|CV731889 FLO--06-C02.g1 Rice flower lambda ph... 343 1e-091
gb|CV731888.1|CV731888 FLO--06-C02.b1 Rice flower lambda ph... 278 5e-072
gb|CV730277.1|CV730277 FLO--03-L23.g1 Rice flower lambda ph... 260 1e-066
ref|NM_185778.1| Oryza sativa (japonica cultivar-group), p... 230 1e-057
gb|CF311843.1|CF311843 ABF--07-E17.b1 ABF3-overexpressing t... 186 1e-044
gb|CF311844.1|CF311844 ABF--07-E17.g1 ABF3-overexpressing t... 186 1e-044
gb|CD670715.1|CD670715 OsMR130 5MT resistant rice mutant cD... 186 1e-044
gb|CB658212.1|CB658212 OSJNEc14B09.f OSJNEc Oryza sativa (j... 178 3e-042
gb|CB683238.1|CB683238 OSJNEf11F16.f OSJNEf Oryza sativa (j... 178 3e-042
gb|AU181658.1|AU181658 AU181658 Rice callus (2001) Oryza sa... 174 5e-041
dbj|AK099911.1| Oryza sativa (japonica cultivar-group) cDNA... 170 8e-040
gb|D41647.1|D41647 RICS4288A Rice shoot Oryza sativa (japon... 117 1e-023
gb|AU181590.1|AU181590 AU181590 Rice callus (2001) Oryza sa... 109 3e-021
gb|AC135926.1| Oryza sativa (japonica cultivar-group) chrom... 101 6e-019
gb|AC135915.2| Oryza sativa (japonica cultivar-group) chrom... 101 6e-019
gb|AACV01011648.1| Oryza sativa (japonica cultivar-group) c... 101 6e-019
gb|AACV01013541.1| Oryza sativa (japonica cultivar-group) c... 101 6e-019
dbj|AP005813.1| Oryza sativa (japonica cultivar-group) geno... 101 6e-019
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 101 6e-019
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 101 6e-019
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 101 6e-019
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 101 6e-019
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 101 6e-019
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 101 6e-019
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 101 6e-019
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 101 6e-019
gb|AACV01005675.1| Oryza sativa (japonica cultivar-group) c... 78 9e-012
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 78 9e-012
dbj|AP004776.3| Oryza sativa (japonica cultivar-group) geno... 78 9e-012
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 78 9e-012
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 78 9e-012
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 78 9e-012
gb|AZ127962.1|AZ127962 OSJNBb0069C21r CUGI Rice BAC Library... 76 4e-011
gb|C72026.1|C72026 C72026 Rice panicle at flowering stage O... 76 4e-011
gb|AQ864837.1|AQ864837 nbeb0024E22r CUGI Rice BAC Library (... 70 2e-009
gb|CG206556.1|CG206556 TOS0176 TAMU Rice Japonica Nipponbar... 70 2e-009
gb|AQ871828.1|AQ871828 nbeb0044N14r CUGI Rice BAC Library (... 68 9e-009
gb|AU097132.1|AU097132 AU097132 Rice shoot Oryza sativa (ja... 62 5e-007
>gb|CF332241.1|CF332241 NACL--08-K19.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--08-K19, mRNA sequence
Length = 636
Score = 402 bits (203), Expect = e-109
Identities = 347/395 (87%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctg 65
||||| || ||||| || |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 223 ccagtggttgtggtcctttctggtagcatggagcctggatttaaaaggggcgatatcctt 282
Query: 66 tttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgat 125
||| | || ||||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct: 283 tttctacacatgagcaaagatcctatccgcacaggagagatagttgttttcaacattgat 342
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgca 185
|||||||||||||||||||| ||||| || ||||||||||||||||| |||| | |||
Sbjct: 343 ggccgtgaaattccaattgttcaccgtgtgattaaggtccatgaacgcgaggaaagtgct 402
Query: 186 gaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgca 245
||||| || |||||||| |||||||| |||||||||||||| ||||| || | ||||||
Sbjct: 403 gaagttgatatcctcacgaaaggtgataataattttggggacgaccgtcttctttatgca 462
Query: 246 catgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttcca 305
||||||||||||||||| || |||||||||||||||||||| ||||| |||| ||||||
Sbjct: 463 catgggcagctttggcttcaccaacatcacattatgggacgggctgtaggctttcttcca 522
Query: 306 tatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgatt 365
||||| || ||| ||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 523 tatgtcgggtgggttacaatcatcatgactgagaaaccatttataaagtacctgctcatc 582
Query: 366 ggtgcactgggcttgctggtcataacgtcgaaaga 400
|| || ||||||||||||||||| || ||||||||
Sbjct: 583 ggcgctctgggcttgctggtcattacatcgaaaga 617
>dbj|AK071238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085B09, full
insert sequence
Length = 1035
Score = 402 bits (203), Expect = e-109
Identities = 347/395 (87%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctg 65
||||| || ||||| || |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 236 ccagtggttgtggtcctttctggtagcatggagcctggatttaaaaggggcgatatcctt 295
Query: 66 tttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgat 125
||| | || ||||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct: 296 tttctacacatgagcaaagatcctatccgcacaggagagatagttgttttcaacattgat 355
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgca 185
|||||||||||||||||||| ||||| || ||||||||||||||||| |||| | |||
Sbjct: 356 ggccgtgaaattccaattgttcaccgtgtgattaaggtccatgaacgcgaggaaagtgct 415
Query: 186 gaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgca 245
||||| || |||||||| |||||||| |||||||||||||| ||||| || | ||||||
Sbjct: 416 gaagttgatatcctcacgaaaggtgataataattttggggacgaccgtcttctttatgca 475
Query: 246 catgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttcca 305
||||||||||||||||| || |||||||||||||||||||| ||||| |||| ||||||
Sbjct: 476 catgggcagctttggcttcaccaacatcacattatgggacgggctgtaggctttcttcca 535
Query: 306 tatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgatt 365
||||| || ||| ||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 536 tatgtcgggtgggttacaatcatcatgactgagaaaccatttataaagtacctgctcatc 595
Query: 366 ggtgcactgggcttgctggtcataacgtcgaaaga 400
|| || ||||||||||||||||| || ||||||||
Sbjct: 596 ggcgctctgggcttgctggtcattacatcgaaaga 630
>gb|AU075641.1|AU075641 AU075641 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0815_6Z, mRNA sequence
Length = 714
Score = 392 bits (198), Expect = e-106
Identities = 339/386 (87%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctg 65
||||| || |||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 72 ccagtggtggtggttctttctggtagcatggaacctggatttaaaagaggtgacatcctg 131
Query: 66 tttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgat 125
|||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||| | |||
Sbjct: 132 tttttgcacatgagcaaagaccctatccgcactggagaaatagttgtttttaatgttgat 191
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgca 185
|||||||||||||||||||| ||||| || || ||||| |||||||| ||||| | ||||
Sbjct: 192 ggccgtgaaattccaattgttcaccgtgtgatcaaggttcatgaacgccaggagagtgca 251
Query: 186 gaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgca 245
||||| ||||||||||| |||||||| || |||||||||||||||||||| | ||||||
Sbjct: 252 gaagttgacatcctcacaaaaggtgataacaattttggggatgaccgacttctgtatgca 311
Query: 246 catgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttcca 305
||||||||||||||||| ||||||||||| |||||||| || ||||| || | || |||
Sbjct: 312 catgggcagctttggcttcagcaacatcatattatggggcgagctgttggttttctgcca 371
Query: 306 tatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgatt 365
|||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct: 372 tatgttggatgggttacaattatcatgactgagaagccaattattaagtaccttctgatc 431
Query: 366 ggtgcactgggcttgctggtcataac 391
|| || |||||| | ||||| |||||
Sbjct: 432 ggcgcgctgggcctactggttataac 457
>dbj|AK058911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-G10, full
insert sequence
Length = 1083
Score = 392 bits (198), Expect = e-106
Identities = 339/386 (87%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctg 65
||||| || |||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 412 ccagtggtggtggttctttctggtagcatggaacctggatttaaaagaggtgacatcctg 471
Query: 66 tttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgat 125
|||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||| | |||
Sbjct: 472 tttttgcacatgagcaaagaccctatccgcactggagaaatagttgtttttaatgttgat 531
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgca 185
|||||||||||||||||||| ||||| || || ||||| |||||||| ||||| | ||||
Sbjct: 532 ggccgtgaaattccaattgttcaccgtgtgatcaaggttcatgaacgccaggagagtgca 591
Query: 186 gaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgca 245
||||| ||||||||||| |||||||| || |||||||||||||||||||| | ||||||
Sbjct: 592 gaagttgacatcctcacaaaaggtgataacaattttggggatgaccgacttctgtatgca 651
Query: 246 catgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttcca 305
||||||||||||||||| ||||||||||| |||||||| || ||||| || | || |||
Sbjct: 652 catgggcagctttggcttcagcaacatcatattatggggcgagctgttggttttctgcca 711
Query: 306 tatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgatt 365
|||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct: 712 tatgttggatgggttacaattatcatgactgagaagccaattattaagtaccttctgatc 771
Query: 366 ggtgcactgggcttgctggtcataac 391
|| || |||||| | ||||| |||||
Sbjct: 772 ggcgcgctgggcctactggttataac 797
>dbj|AK102635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099N11, full
insert sequence
Length = 1065
Score = 392 bits (198), Expect = e-106
Identities = 339/386 (87%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctg 65
||||| || |||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 381 ccagtggtggtggttctttctggtagcatggaacctggatttaaaagaggtgacatcctg 440
Query: 66 tttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgat 125
|||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||| | |||
Sbjct: 441 tttttgcacatgagcaaagaccctatccgcactggagaaatagttgtttttaatgttgat 500
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgca 185
|||||||||||||||||||| ||||| || || ||||| |||||||| ||||| | ||||
Sbjct: 501 ggccgtgaaattccaattgttcaccgtgtgatcaaggttcatgaacgccaggagagtgca 560
Query: 186 gaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgca 245
||||| ||||||||||| |||||||| || |||||||||||||||||||| | ||||||
Sbjct: 561 gaagttgacatcctcacaaaaggtgataacaattttggggatgaccgacttctgtatgca 620
Query: 246 catgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttcca 305
||||||||||||||||| ||||||||||| |||||||| || ||||| || | || |||
Sbjct: 621 catgggcagctttggcttcagcaacatcatattatggggcgagctgttggttttctgcca 680
Query: 306 tatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgatt 365
|||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct: 681 tatgttggatgggttacaattatcatgactgagaagccaattattaagtaccttctgatc 740
Query: 366 ggtgcactgggcttgctggtcataac 391
|| || |||||| | ||||| |||||
Sbjct: 741 ggcgcgctgggcctactggttataac 766
>dbj|AK106215.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-H01, full
insert sequence
Length = 1063
Score = 392 bits (198), Expect = e-106
Identities = 339/386 (87%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctg 65
||||| || |||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 379 ccagtggtggtggttctttctggtagcatggaacctggatttaaaagaggtgacatcctg 438
Query: 66 tttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgat 125
|||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||| | |||
Sbjct: 439 tttttgcacatgagcaaagaccctatccgcactggagaaatagttgtttttaatgttgat 498
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgca 185
|||||||||||||||||||| ||||| || || ||||| |||||||| ||||| | ||||
Sbjct: 499 ggccgtgaaattccaattgttcaccgtgtgatcaaggttcatgaacgccaggagagtgca 558
Query: 186 gaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgca 245
||||| ||||||||||| |||||||| || |||||||||||||||||||| | ||||||
Sbjct: 559 gaagttgacatcctcacaaaaggtgataacaattttggggatgaccgacttctgtatgca 618
Query: 246 catgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttcca 305
||||||||||||||||| ||||||||||| |||||||| || ||||| || | || |||
Sbjct: 619 catgggcagctttggcttcagcaacatcatattatggggcgagctgttggttttctgcca 678
Query: 306 tatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgatt 365
|||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct: 679 tatgttggatgggttacaattatcatgactgagaagccaattattaagtaccttctgatc 738
Query: 366 ggtgcactgggcttgctggtcataac 391
|| || |||||| | ||||| |||||
Sbjct: 739 ggcgcgctgggcctactggttataac 764
>dbj|AK111407.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-E09, full
insert sequence
Length = 1517
Score = 392 bits (198), Expect = e-106
Identities = 339/386 (87%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctg 65
||||| || |||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 390 ccagtggtggtggttctttctggtagcatggaacctggatttaaaagaggtgacatcctg 449
Query: 66 tttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgat 125
|||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||| | |||
Sbjct: 450 tttttgcacatgagcaaagaccctatccgcactggagaaatagttgtttttaatgttgat 509
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgca 185
|||||||||||||||||||| ||||| || || ||||| |||||||| ||||| | ||||
Sbjct: 510 ggccgtgaaattccaattgttcaccgtgtgatcaaggttcatgaacgccaggagagtgca 569
Query: 186 gaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgca 245
||||| ||||||||||| |||||||| || |||||||||||||||||||| | ||||||
Sbjct: 570 gaagttgacatcctcacaaaaggtgataacaattttggggatgaccgacttctgtatgca 629
Query: 246 catgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttcca 305
||||||||||||||||| ||||||||||| |||||||| || ||||| || | || |||
Sbjct: 630 catgggcagctttggcttcagcaacatcatattatggggcgagctgttggttttctgcca 689
Query: 306 tatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctgatt 365
|||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct: 690 tatgttggatgggttacaattatcatgactgagaagccaattattaagtaccttctgatc 749
Query: 366 ggtgcactgggcttgctggtcataac 391
|| || |||||| | ||||| |||||
Sbjct: 750 ggcgcgctgggcctactggttataac 775
>gb|CV731889.1|CV731889 FLO--06-C02.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--06-C02,
mRNA sequence
Length = 498
Score = 343 bits (173), Expect = 1e-091
Identities = 287/325 (88%)
Strand = Plus / Minus
Query: 76 tgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaa 135
|||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 498 tgagcaaagatcctatccgcacaggagagatagttgttttcaacattgatggccgtgaaa 439
Query: 136 ttccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggaca 195
|||||||||| ||||| || ||||||||||||||||| |||| | ||| ||||| || |
Sbjct: 438 ttccaattgttcaccgtgtgattaaggtccatgaacgcgaggaaagtgctgaagttgata 379
Query: 196 tcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagc 255
||||||| |||||||| |||||||||||||| ||||| || | ||||||||||||||||
Sbjct: 378 tcctcacgaaaggtgataataattttggggacgaccgtcttctttatgcacatgggcagc 319
Query: 256 tttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatatgttggct 315
||||||| || |||||||||||||||||||| ||||| |||| ||||||||||| || |
Sbjct: 318 tttggcttcaccaacatcacattatgggacgggctgtaggctttcttccatatgtcgggt 259
Query: 316 ggattacaattatcatgactgagaaaccatttattaagtacctgctgattggtgcactgg 375
|| ||||||| ||||||||||||||||||||||| ||||||||||| || || || ||||
Sbjct: 258 gggttacaatcatcatgactgagaaaccatttataaagtacctgctcatcggcgctctgg 199
Query: 376 gcttgctggtcataacgtcgaaaga 400
||||||||||||| || ||||||||
Sbjct: 198 gcttgctggtcattacatcgaaaga 174
>gb|CV731888.1|CV731888 FLO--06-C02.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--06-C02,
mRNA sequence
Length = 503
Score = 278 bits (140), Expect = 5e-072
Identities = 239/272 (87%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctg 65
||||| || ||||| || |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 232 ccagtggttgtggtcctttctggtagcatggagcctggatttaaaaggggcgatatcctt 291
Query: 66 tttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgat 125
||| | || ||||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct: 292 tttctacacatgagcaaagatcctatccgcacaggagagatagttgttttcaacattgat 351
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgca 185
|||||||||||||||||||| ||||| || ||||||||||||||||| |||| | |||
Sbjct: 352 ggccgtgaaattccaattgttcaccgtgtgattaaggtccatgaacgcgaggaaagtgct 411
Query: 186 gaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgca 245
||||| || |||||||| |||||||| |||||||||||||| ||||| || | ||||||
Sbjct: 412 gaagttgatatcctcacgaaaggtgataataattttggggacgaccgtcttctttatgca 471
Query: 246 catgggcagctttggctccagcaacatcacat 277
||||||||||||||||| || |||||||||||
Sbjct: 472 catgggcagctttggcttcaccaacatcacat 503
>gb|CV730277.1|CV730277 FLO--03-L23.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--03-L23,
mRNA sequence
Length = 536
Score = 260 bits (131), Expect = 1e-066
Identities = 224/255 (87%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctg 65
||||| || ||||| || |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 282 ccagtggttgtggtcctttctggtagcatggagcctggatttaaaaggggcgatatcctt 341
Query: 66 tttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgat 125
||| | || ||||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct: 342 tttctacacatgagcaaagatcctatccgcacaggagagatagttgttttcaacattgat 401
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgca 185
|||||||||||||||||||| ||||| || ||||||||||||||||| |||| | |||
Sbjct: 402 ggccgtgaaattccaattgttcaccgtgtgattaaggtccatgaacgcgaggaaagtgct 461
Query: 186 gaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgca 245
||||| || |||||||| |||||||| |||||||||||||| ||||| || | ||||||
Sbjct: 462 gaagttgatatcctcacgaaaggtgataataattttggggacgaccgtcttctttatgca 521
Query: 246 catgggcagctttgg 260
|||||||||||||||
Sbjct: 522 catgggcagctttgg 536
>ref|NM_185778.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 651
Score = 230 bits (116), Expect = 1e-057
Identities = 182/204 (89%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctg 65
||||| || |||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 199 ccagtggtggtggttctttctggtagcatggaacctggatttaaaagaggtgacatcctg 258
Query: 66 tttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgat 125
|||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||| | |||
Sbjct: 259 tttttgcacatgagcaaagaccctatccgcactggagaaatagttgtttttaatgttgat 318
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgca 185
|||||||||||||||||||| ||||| || || ||||| |||||||| ||||| | ||||
Sbjct: 319 ggccgtgaaattccaattgttcaccgtgtgatcaaggttcatgaacgccaggagagtgca 378
Query: 186 gaagtggacatcctcaccaaaggt 209
||||| ||||||||||| ||||||
Sbjct: 379 gaagttgacatcctcacaaaaggt 402
Score = 168 bits (85), Expect = 3e-039
Identities = 160/185 (86%)
Strand = Plus / Plus
Query: 207 ggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctccag 266
||||| || |||||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct: 454 ggtgataacaattttggggatgaccgacttctgtatgcacatgggcagctttggcttcag 513
Query: 267 caacatcacattatgggacgtgctgtgggctaccttccatatgttggctggattacaatt 326
|||||||| |||||||| || ||||| || | || ||||||||||| ||| ||||||||
Sbjct: 514 caacatcatattatggggcgagctgttggttttctgccatatgttggatgggttacaatt 573
Query: 327 atcatgactgagaaaccatttattaagtacctgctgattggtgcactgggcttgctggtc 386
|||||||||||||| ||| ||||||||||||| ||||| || || |||||| | |||||
Sbjct: 574 atcatgactgagaagccaattattaagtaccttctgatcggcgcgctgggcctactggtt 633
Query: 387 ataac 391
|||||
Sbjct: 634 ataac 638
>gb|CF311843.1|CF311843 ABF--07-E17.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--07-E17, mRNA sequence
Length = 543
Score = 186 bits (94), Expect = 1e-044
Identities = 133/146 (91%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctg 65
||||| || |||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 392 ccagtggtggtggttctttctggtagcatggaacctggatttaaaagaggtgacatcctg 451
Query: 66 tttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgat 125
|||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||| | |||
Sbjct: 452 tttttgcacatgagcaaagaccctatccgcactggagaaatagttgtttttaatgttgat 511
Query: 126 ggccgtgaaattccaattgtccaccg 151
|||||||||||||||||||| |||||
Sbjct: 512 ggccgtgaaattccaattgttcaccg 537
>gb|CF311844.1|CF311844 ABF--07-E17.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--07-E17, mRNA sequence
Length = 563
Score = 186 bits (94), Expect = 1e-044
Identities = 200/234 (85%), Gaps = 1/234 (0%)
Strand = Plus / Minus
Query: 159 aaggtccatgaacgtcaggacactgcagaagtggacatcctcaccaaaggtgacaataat 218
||||| |||||||| ||||| | ||||||||| |||||| |||| |||||||| || |||
Sbjct: 556 aaggttcatgaacgccaggagagtgcagaagttgacatcttcacaaaaggtgataacaat 497
Query: 219 tttggggatgaccgactat-tatatgcacatgggcagctttggctccagcaacatcacat 277
||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 496 tttggggatgaccgacttcgtgtatgcacatgggcagctttggcttcagcaacatcatat 437
Query: 278 tatgggacgtgctgtgggctaccttccatatgttggctggattacaattatcatgactga 337
|||||| || ||||| || | || ||||||||||| ||| |||||||||||||||||||
Sbjct: 436 tatggggcgagctgttggttttctgccatatgttggatgggttacaattatcatgactga 377
Query: 338 gaaaccatttattaagtacctgctgattggtgcactgggcttgctggtcataac 391
||| ||| ||||||||| ||| ||||| || || |||||| | ||||| |||||
Sbjct: 376 gaagccaattattaagtcccttctgatcggcgcgctgggcctactggttataac 323
>gb|CD670715.1|CD670715 OsMR130 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 671
Score = 186 bits (94), Expect = 1e-044
Identities = 197/230 (85%), Gaps = 1/230 (0%)
Strand = Plus / Plus
Query: 24 tctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatgagcaaa 83
||||||| |||||| ||||||||||||||||| |||||||| ||| | || |||||||||
Sbjct: 283 tctggtaccatggagcctggatttaaaaggggcgatatcctttttctacacatgagcaaa 342
Query: 84 gatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaattccaatt 143
|||||||| ||||||||||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 343 gatcctatccgcacaggagagatagttgttttcaacattgatggccgccaaattccaatt 402
Query: 144 gtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatcctcacc 203
|| |||||||| |||||||||||||| || |||| | || ||||| || |||||||||
Sbjct: 403 gttcaccgcgtgattaaggtccatgaccgcgaggaaagcgctgaagttgatatcctcacc 462
Query: 204 -aaaggtgacaataattttggggatgaccgactattatatgcacatgggc 252
||||| || |||||||||||||| |||| || | |||||||||||||
Sbjct: 463 gaaaggggataataattttggggaccaccgtcttctttatgcacatgggc 512
>gb|CB658212.1|CB658212 OSJNEc14B09.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14B09 5', mRNA sequence
Length = 859
Score = 178 bits (90), Expect = 3e-042
Identities = 227/272 (83%), Gaps = 3/272 (1%)
Strand = Plus / Plus
Query: 15 gtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcat 74
|||||||| |||| |||||||| | ||||||| ||||||| |||||||||||||||||
Sbjct: 217 gtggttctatctgaaagcatggagcttggatttgaaaggggggatatcctgtttttgcaa 276
Query: 75 atgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaa 134
||||||||| | ||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 277 atgagcaaacaccctatacgaacaggagatatagttgttttcaat---gatggccgtgaa 333
Query: 135 attccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggac 194
|||||||| ||||| ||||| ||| |||| || ||||| | ||| | |||| |||| ||
Sbjct: 334 attccaatcgtccatcgcgttattgaggttcacgaacgacgggataatgcacaagttgat 393
Query: 195 atcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcag 254
||||||| ||||||||||| ||| | ||| |||||| | | || |||||||||||
Sbjct: 394 ttcctcacaaaaggtgacaacaatcctatggacgaccgaattctttacacacatgggcag 453
Query: 255 ctttggctccagcaacatcacattatgggacg 286
|||||||| |||||||||||||| ||||||||
Sbjct: 454 ctttggcttcagcaacatcacatcatgggacg 485
>gb|CB683238.1|CB683238 OSJNEf11F16.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11F16 5', mRNA sequence
Length = 823
Score = 178 bits (90), Expect = 3e-042
Identities = 227/272 (83%), Gaps = 3/272 (1%)
Strand = Plus / Plus
Query: 15 gtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcat 74
|||||||| |||| |||||||| | ||||||| ||||||| |||||||||||||||||
Sbjct: 179 gtggttctatctgaaagcatggagcttggatttgaaaggggggatatcctgtttttgcaa 238
Query: 75 atgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaa 134
||||||||| | ||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 239 atgagcaaacaccctatacgaacaggagatatagttgttttcaat---gatggccgtgaa 295
Query: 135 attccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggac 194
|||||||| ||||| ||||| ||| |||| || ||||| | ||| | |||| |||| ||
Sbjct: 296 attccaatcgtccatcgcgttattgaggttcacgaacgacgggataatgcacaagttgat 355
Query: 195 atcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcag 254
||||||| ||||||||||| ||| | ||| |||||| | | || |||||||||||
Sbjct: 356 ttcctcacaaaaggtgacaacaatcctatggacgaccgaattctttacacacatgggcag 415
Query: 255 ctttggctccagcaacatcacattatgggacg 286
|||||||| |||||||||||||| ||||||||
Sbjct: 416 ctttggcttcagcaacatcacatcatgggacg 447
>gb|AU181658.1|AU181658 AU181658 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C51117, mRNA sequence
Length = 447
Score = 174 bits (88), Expect = 5e-041
Identities = 179/210 (85%)
Strand = Plus / Plus
Query: 182 tgcagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattata 241
|||| |||| ||||||||| | |||||||| | |||||||||||||||||||| | ||
Sbjct: 3 tgcaaaagttgacatcctcccaaaaggtgatancaattttggggatgaccgacttctgta 62
Query: 242 tgcacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctacct 301
||||||||||||||||||||| ||||||||||| |||||||| || ||||| || | ||
Sbjct: 63 tgcacatgggcagctttggcttcagcaacatcatattatggggcgagctgttggttttct 122
Query: 302 tccatatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgct 361
||||||||||| ||| || ||||||||||||||||||| ||| ||||||||||||| ||
Sbjct: 123 gccatatgttggatgggttncaattatcatgactgagaagccaattattaagtaccttct 182
Query: 362 gattggtgcactgggcttgctggtcataac 391
||| || || |||||| | ||||| |||||
Sbjct: 183 gatcggcgcgctgggcctactggttataac 212
>dbj|AK099911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D13, full
insert sequence
Length = 1489
Score = 170 bits (86), Expect = 8e-040
Identities = 226/272 (83%), Gaps = 3/272 (1%)
Strand = Plus / Plus
Query: 15 gtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcat 74
|||||||| |||| ||||||| | ||||||| ||||||| |||||||||||||||||
Sbjct: 224 gtggttctatctgaaagcatggggcttggatttgaaaggggggatatcctgtttttgcaa 283
Query: 75 atgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaa 134
||||||||| | ||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 284 atgagcaaacaccctatacgaacaggagatatagttgttttcaat---gatggccgtgaa 340
Query: 135 attccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggac 194
|||||||| ||||| ||||| ||| |||| || ||||| | ||| | |||| |||| ||
Sbjct: 341 attccaatcgtccatcgcgttattgaggttcacgaacgacgggataatgcacaagttgat 400
Query: 195 atcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcag 254
||||||| ||||||||||| ||| | ||| |||||| | | || |||||||||||
Sbjct: 401 ttcctcacaaaaggtgacaacaatcctatggacgaccgaattctttacacacatgggcag 460
Query: 255 ctttggctccagcaacatcacattatgggacg 286
|||||||| |||||||||||||| ||||||||
Sbjct: 461 ctttggcttcagcaacatcacatcatgggacg 492
>gb|D41647.1|D41647 RICS4288A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 390
Score = 117 bits (59), Expect = 1e-023
Identities = 97/110 (88%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctg 65
||||| || ||||| || |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 195 ccagtggttgtggtcctttctggtagcatggagcctggatttaaaaggggcgatatcctt 254
Query: 66 tttttgcatatgagcaaagatcctattcgcacaggagaaatagttgtttt 115
||| | || ||||||||||||||||| |||||||| || |||||||||||
Sbjct: 255 tttctacacatgagcaaagatcctatccgcacaggngagatagttgtttt 304
>gb|AU181590.1|AU181590 AU181590 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C50564, mRNA sequence
Length = 448
Score = 109 bits (55), Expect = 3e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctg 65
||||| || |||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 370 ccagtggtggtggttctttctggtagcatggaacctggatttaaaagaggtgacatcctg 429
Query: 66 tttttgcatatgagcaaag 84
|||||||| ||||||||||
Sbjct: 430 tttttgcacatgagcaaag 448
>gb|AC135926.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0589A05, ***
SEQUENCING IN PROGRESS ***, 4 ordered pieces
Length = 148291
Score = 101 bits (51), Expect = 6e-019
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| |||||||||||||| ||||| || | ||||||||||||||||||||||| ||
Sbjct: 143365 aggtgataataattttggggacgaccgtcttctttatgcacatgggcagctttggcttca 143424
Query: 266 gcaacatcacattatgggacgtgctgt 292
|||||||||||||||||||| |||||
Sbjct: 143425 ccaacatcacattatgggacgggctgt 143451
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
|||||||| ||| | || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 142816 gatatcctttttctacacatgagcaaagatcctatccgcacaggagagatagttgttttc 142875
Query: 117 aa 118
||
Sbjct: 142876 aa 142877
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 300 cttccatatgttggctggattacaattatcatgactgagaaaccatttat 349
||||||||||| || ||| ||||||| |||||||||||||||||||||||
Sbjct: 143546 cttccatatgtcgggtgggttacaatcatcatgactgagaaaccatttat 143595
Score = 58.0 bits (29), Expect = 8e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggg 54
||||| || ||||| || |||||||||||||| ||||||||||||||||
Sbjct: 141395 ccagtggttgtggtcctttctggtagcatggagcctggatttaaaaggg 141443
Score = 52.0 bits (26), Expect = 5e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggt 163
|||||||||||||||||||| ||||| || ||||||||
Sbjct: 143023 ggccgtgaaattccaattgttcaccgtgtgattaaggt 143060
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 352 agtacctgctgattggtgcactgggcttgctggtcataacgtcgaaaga 400
|||||||||| || || || ||||||||||||||||| || ||||||||
Sbjct: 143855 agtacctgctcatcggcgctctgggcttgctggtcattacatcgaaaga 143903
>gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
OSJNBa0082F22, complete sequence
Length = 176038
Score = 101 bits (51), Expect = 6e-019
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| |||||||||||||| ||||| || | ||||||||||||||||||||||| ||
Sbjct: 114516 aggtgataataattttggggacgaccgtcttctttatgcacatgggcagctttggcttca 114575
Query: 266 gcaacatcacattatgggacgtgctgt 292
|||||||||||||||||||| |||||
Sbjct: 114576 ccaacatcacattatgggacgggctgt 114602
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
|||||||| ||| | || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 113967 gatatcctttttctacacatgagcaaagatcctatccgcacaggagagatagttgttttc 114026
Query: 117 aa 118
||
Sbjct: 114027 aa 114028
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 300 cttccatatgttggctggattacaattatcatgactgagaaaccatttat 349
||||||||||| || ||| ||||||| |||||||||||||||||||||||
Sbjct: 114697 cttccatatgtcgggtgggttacaatcatcatgactgagaaaccatttat 114746
Score = 58.0 bits (29), Expect = 8e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggg 54
||||| || ||||| || |||||||||||||| ||||||||||||||||
Sbjct: 112546 ccagtggttgtggtcctttctggtagcatggagcctggatttaaaaggg 112594
Score = 52.0 bits (26), Expect = 5e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggt 163
|||||||||||||||||||| ||||| || ||||||||
Sbjct: 114174 ggccgtgaaattccaattgttcaccgtgtgattaaggt 114211
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 352 agtacctgctgattggtgcactgggcttgctggtcataacgtcgaaaga 400
|||||||||| || || || ||||||||||||||||| || ||||||||
Sbjct: 115006 agtacctgctcatcggcgctctgggcttgctggtcattacatcgaaaga 115054
>gb|AACV01011648.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011648, whole
genome shotgun sequence
Length = 19801
Score = 101 bits (51), Expect = 6e-019
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| |||||||||||||| ||||| || | ||||||||||||||||||||||| ||
Sbjct: 12399 aggtgataataattttggggacgaccgtcttctttatgcacatgggcagctttggcttca 12340
Query: 266 gcaacatcacattatgggacgtgctgt 292
|||||||||||||||||||| |||||
Sbjct: 12339 ccaacatcacattatgggacgggctgt 12313
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
|||||||| ||| | || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 12948 gatatcctttttctacacatgagcaaagatcctatccgcacaggagagatagttgttttc 12889
Query: 117 aa 118
||
Sbjct: 12888 aa 12887
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 300 cttccatatgttggctggattacaattatcatgactgagaaaccatttat 349
||||||||||| || ||| ||||||| |||||||||||||||||||||||
Sbjct: 12218 cttccatatgtcgggtgggttacaatcatcatgactgagaaaccatttat 12169
Score = 58.0 bits (29), Expect = 8e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggg 54
||||| || ||||| || |||||||||||||| ||||||||||||||||
Sbjct: 14369 ccagtggttgtggtcctttctggtagcatggagcctggatttaaaaggg 14321
Score = 52.0 bits (26), Expect = 5e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggt 163
|||||||||||||||||||| ||||| || ||||||||
Sbjct: 12741 ggccgtgaaattccaattgttcaccgtgtgattaaggt 12704
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 352 agtacctgctgattggtgcactgggcttgctggtcataacgtcgaaaga 400
|||||||||| || || || ||||||||||||||||| || ||||||||
Sbjct: 11909 agtacctgctcatcggcgctctgggcttgctggtcattacatcgaaaga 11861
>gb|AACV01013541.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013541, whole
genome shotgun sequence
Length = 13424
Score = 101 bits (51), Expect = 6e-019
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| || |||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct: 3778 aggtgataacaattttggggatgaccgacttctgtatgcacatgggcagctttggcttca 3837
Query: 266 gcaacatcacattatgggacgtgctgt 292
||||||||| |||||||| || |||||
Sbjct: 3838 gcaacatcatattatggggcgagctgt 3864
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 53 gggtgatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgt 112
|||||| |||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 3277 gggtgacatcctgtttttgcacatgagcaaagaccctatccgcactggagaaatagttgt 3336
Query: 113 ttt 115
|||
Sbjct: 3337 ttt 3339
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 303 ccatatgttggctggattacaattatcatgactgagaaaccatttattaag 353
||||||||||| ||| |||||||||||||||||||||| ||| ||||||||
Sbjct: 3966 ccatatgttggatgggttacaattatcatgactgagaagccaattattaag 4016
Score = 69.9 bits (35), Expect = 2e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaag 52
||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 2794 ccagtggtggtggttctttctggtagcatggaacctggatttaaaag 2840
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 160 aggtccatgaacgtcaggacactgcagaagtggacatcctcaccaaaggt 209
|||| |||||||| ||||| | ||||||||| ||||||||||| ||||||
Sbjct: 3578 aggttcatgaacgccaggagagtgcagaagttgacatcctcacaaaaggt 3627
Score = 44.1 bits (22), Expect = 0.13
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 126 ggccgtgaaattccaattgtccaccg 151
|||||||||||||||||||| |||||
Sbjct: 3448 ggccgtgaaattccaattgttcaccg 3473
>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0676F10
Length = 142510
Score = 101 bits (51), Expect = 6e-019
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| || |||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct: 36350 aggtgataacaattttggggatgaccgacttctgtatgcacatgggcagctttggcttca 36291
Query: 266 gcaacatcacattatgggacgtgctgt 292
||||||||| |||||||| || |||||
Sbjct: 36290 gcaacatcatattatggggcgagctgt 36264
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 53 gggtgatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgt 112
|||||| |||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 36851 gggtgacatcctgtttttgcacatgagcaaagaccctatccgcactggagaaatagttgt 36792
Query: 113 ttt 115
|||
Sbjct: 36791 ttt 36789
Score = 69.9 bits (35), Expect = 2e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaag 52
||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 37334 ccagtggtggtggttctttctggtagcatggaacctggatttaaaag 37288
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 303 ccatatgttggctggattacaattatcatgactgagaaaccatttattaag 353
||||||||||| ||| |||||||||||||||||||||| ||| ||||||||
Sbjct: 36162 ccatatgttggatgggttacaattatcatgactgagaagccaattattaag 36112
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 160 aggtccatgaacgtcaggacactgcagaagtggacatcctcaccaaaggt 209
|||| |||||||| ||||| | ||||||||| ||||||||||| ||||||
Sbjct: 36550 aggttcatgaacgccaggagagtgcagaagttgacatcctcacaaaaggt 36501
Score = 44.1 bits (22), Expect = 0.13
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 126 ggccgtgaaattccaattgtccaccg 151
|||||||||||||||||||| |||||
Sbjct: 36680 ggccgtgaaattccaattgttcaccg 36655
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 101 bits (51), Expect = 6e-019
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| || |||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct: 4960589 aggtgataacaattttggggatgaccgacttctgtatgcacatgggcagctttggcttca 4960530
Query: 266 gcaacatcacattatgggacgtgctgt 292
||||||||| |||||||| || |||||
Sbjct: 4960529 gcaacatcatattatggggcgagctgt 4960503
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 53 gggtgatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgt 112
|||||| |||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 4961090 gggtgacatcctgtttttgcacatgagcaaagaccctatccgcactggagaaatagttgt 4961031
Query: 113 ttt 115
|||
Sbjct: 4961030 ttt 4961028
Score = 69.9 bits (35), Expect = 2e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaag 52
||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 4961573 ccagtggtggtggttctttctggtagcatggaacctggatttaaaag 4961527
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 303 ccatatgttggctggattacaattatcatgactgagaaaccatttattaag 353
||||||||||| ||| |||||||||||||||||||||| ||| ||||||||
Sbjct: 4960401 ccatatgttggatgggttacaattatcatgactgagaagccaattattaag 4960351
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 160 aggtccatgaacgtcaggacactgcagaagtggacatcctcaccaaaggt 209
|||| |||||||| ||||| | ||||||||| ||||||||||| ||||||
Sbjct: 4960789 aggttcatgaacgccaggagagtgcagaagttgacatcctcacaaaaggt 4960740
Score = 44.1 bits (22), Expect = 0.13
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 126 ggccgtgaaattccaattgtccaccg 151
|||||||||||||||||||| |||||
Sbjct: 4960919 ggccgtgaaattccaattgttcaccg 4960894
>ref|NT_107206.1| Oryza sativa (japonica cultivar-group)
Length = 2441071
Score = 101 bits (51), Expect = 6e-019
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| |||||||||||||| ||||| || | ||||||||||||||||||||||| ||
Sbjct: 685277 aggtgataataattttggggacgaccgtcttctttatgcacatgggcagctttggcttca 685336
Query: 266 gcaacatcacattatgggacgtgctgt 292
|||||||||||||||||||| |||||
Sbjct: 685337 ccaacatcacattatgggacgggctgt 685363
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
|||||||| ||| | || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 684728 gatatcctttttctacacatgagcaaagatcctatccgcacaggagagatagttgttttc 684787
Query: 117 aa 118
||
Sbjct: 684788 aa 684789
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 300 cttccatatgttggctggattacaattatcatgactgagaaaccatttat 349
||||||||||| || ||| ||||||| |||||||||||||||||||||||
Sbjct: 685458 cttccatatgtcgggtgggttacaatcatcatgactgagaaaccatttat 685507
Score = 58.0 bits (29), Expect = 8e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggg 54
||||| || ||||| || |||||||||||||| ||||||||||||||||
Sbjct: 683307 ccagtggttgtggtcctttctggtagcatggagcctggatttaaaaggg 683355
Score = 52.0 bits (26), Expect = 5e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggt 163
|||||||||||||||||||| ||||| || ||||||||
Sbjct: 684935 ggccgtgaaattccaattgttcaccgtgtgattaaggt 684972
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 352 agtacctgctgattggtgcactgggcttgctggtcataacgtcgaaaga 400
|||||||||| || || || ||||||||||||||||| || ||||||||
Sbjct: 685767 agtacctgctcatcggcgctctgggcttgctggtcattacatcgaaaga 685815
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047
genomic scaffold, whole genome shotgun sequence
Length = 2656042
Score = 101 bits (51), Expect = 6e-019
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| || |||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct: 681814 aggtgataacaattttggggatgaccgacttctgtatgcacatgggcagctttggcttca 681755
Query: 266 gcaacatcacattatgggacgtgctgt 292
||||||||| |||||||| || |||||
Sbjct: 681754 gcaacatcatattatggggcgagctgt 681728
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 53 gggtgatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgt 112
|||||| |||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 682315 gggtgacatcctgtttttgcacatgagcaaagaccctatccgcactggagaaatagttgt 682256
Query: 113 ttt 115
|||
Sbjct: 682255 ttt 682253
Score = 69.9 bits (35), Expect = 2e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaag 52
||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 682798 ccagtggtggtggttctttctggtagcatggaacctggatttaaaag 682752
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 303 ccatatgttggctggattacaattatcatgactgagaaaccatttattaag 353
||||||||||| ||| |||||||||||||||||||||| ||| ||||||||
Sbjct: 681626 ccatatgttggatgggttacaattatcatgactgagaagccaattattaag 681576
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 160 aggtccatgaacgtcaggacactgcagaagtggacatcctcaccaaaggt 209
|||| |||||||| ||||| | ||||||||| ||||||||||| ||||||
Sbjct: 682014 aggttcatgaacgccaggagagtgcagaagttgacatcctcacaaaaggt 681965
Score = 44.1 bits (22), Expect = 0.13
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 126 ggccgtgaaattccaattgtccaccg 151
|||||||||||||||||||| |||||
Sbjct: 682144 ggccgtgaaattccaattgttcaccg 682119
>gb|CH401204.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000041
genomic scaffold, whole genome shotgun sequence
Length = 2540762
Score = 101 bits (51), Expect = 6e-019
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| |||||||||||||| ||||| || | ||||||||||||||||||||||| ||
Sbjct: 704986 aggtgataataattttggggacgaccgtcttctttatgcacatgggcagctttggcttca 705045
Query: 266 gcaacatcacattatgggacgtgctgt 292
|||||||||||||||||||| |||||
Sbjct: 705046 ccaacatcacattatgggacgggctgt 705072
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
|||||||| ||| | || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 704437 gatatcctttttctacacatgagcaaagatcctatccgcacaggagagatagttgttttc 704496
Query: 117 aa 118
||
Sbjct: 704497 aa 704498
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 300 cttccatatgttggctggattacaattatcatgactgagaaaccatttat 349
||||||||||| || ||| ||||||| |||||||||||||||||||||||
Sbjct: 705167 cttccatatgtcgggtgggttacaatcatcatgactgagaaaccatttat 705216
Score = 58.0 bits (29), Expect = 8e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggg 54
||||| || ||||| || |||||||||||||| ||||||||||||||||
Sbjct: 703016 ccagtggttgtggtcctttctggtagcatggagcctggatttaaaaggg 703064
Score = 52.0 bits (26), Expect = 5e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggt 163
|||||||||||||||||||| ||||| || ||||||||
Sbjct: 704644 ggccgtgaaattccaattgttcaccgtgtgattaaggt 704681
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 352 agtacctgctgattggtgcactgggcttgctggtcataacgtcgaaaga 400
|||||||||| || || || ||||||||||||||||| || ||||||||
Sbjct: 705476 agtacctgctcatcggcgctctgggcttgctggtcattacatcgaaaga 705524
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 101 bits (51), Expect = 6e-019
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| || |||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct: 9289466 aggtgataacaattttggggatgaccgacttctgtatgcacatgggcagctttggcttca 9289407
Query: 266 gcaacatcacattatgggacgtgctgt 292
||||||||| |||||||| || |||||
Sbjct: 9289406 gcaacatcatattatggggcgagctgt 9289380
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 53 gggtgatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgt 112
|||||| |||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 9289967 gggtgacatcctgtttttgcacatgagcaaagaccctatccgcactggagaaatagttgt 9289908
Query: 113 ttt 115
|||
Sbjct: 9289907 ttt 9289905
Score = 69.9 bits (35), Expect = 2e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaag 52
||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 9290450 ccagtggtggtggttctttctggtagcatggaacctggatttaaaag 9290404
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 303 ccatatgttggctggattacaattatcatgactgagaaaccatttattaag 353
||||||||||| ||| |||||||||||||||||||||| ||| ||||||||
Sbjct: 9289278 ccatatgttggatgggttacaattatcatgactgagaagccaattattaag 9289228
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 160 aggtccatgaacgtcaggacactgcagaagtggacatcctcaccaaaggt 209
|||| |||||||| ||||| | ||||||||| ||||||||||| ||||||
Sbjct: 9289666 aggttcatgaacgccaggagagtgcagaagttgacatcctcacaaaaggt 9289617
Score = 44.1 bits (22), Expect = 0.13
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 126 ggccgtgaaattccaattgtccaccg 151
|||||||||||||||||||| |||||
Sbjct: 9289796 ggccgtgaaattccaattgttcaccg 9289771
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 101 bits (51), Expect = 6e-019
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| |||||||||||||| ||||| || | ||||||||||||||||||||||| ||
Sbjct: 12970386 aggtgataataattttggggacgaccgtcttctttatgcacatgggcagctttggcttca 12970445
Query: 266 gcaacatcacattatgggacgtgctgt 292
|||||||||||||||||||| |||||
Sbjct: 12970446 ccaacatcacattatgggacgggctgt 12970472
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
|||||||| ||| | || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 12969837 gatatcctttttctacacatgagcaaagatcctatccgcacaggagagatagttgttttc 12969896
Query: 117 aa 118
||
Sbjct: 12969897 aa 12969898
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 300 cttccatatgttggctggattacaattatcatgactgagaaaccatttat 349
||||||||||| || ||| ||||||| |||||||||||||||||||||||
Sbjct: 12970567 cttccatatgtcgggtgggttacaatcatcatgactgagaaaccatttat 12970616
Score = 58.0 bits (29), Expect = 8e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggg 54
||||| || ||||| || |||||||||||||| ||||||||||||||||
Sbjct: 12968416 ccagtggttgtggtcctttctggtagcatggagcctggatttaaaaggg 12968464
Score = 52.0 bits (26), Expect = 5e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggt 163
|||||||||||||||||||| ||||| || ||||||||
Sbjct: 12970044 ggccgtgaaattccaattgttcaccgtgtgattaaggt 12970081
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 352 agtacctgctgattggtgcactgggcttgctggtcataacgtcgaaaga 400
|||||||||| || || || ||||||||||||||||| || ||||||||
Sbjct: 12970876 agtacctgctcatcggcgctctgggcttgctggtcattacatcgaaaga 12970924
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 101 bits (51), Expect = 6e-019
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| |||||||||||||| ||||| || | ||||||||||||||||||||||| ||
Sbjct: 13151739 aggtgataataattttggggacgaccgtcttctttatgcacatgggcagctttggcttca 13151798
Query: 266 gcaacatcacattatgggacgtgctgt 292
|||||||||||||||||||| |||||
Sbjct: 13151799 ccaacatcacattatgggacgggctgt 13151825
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
|||||||| ||| | || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 13151190 gatatcctttttctacacatgagcaaagatcctatccgcacaggagagatagttgttttc 13151249
Query: 117 aa 118
||
Sbjct: 13151250 aa 13151251
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 300 cttccatatgttggctggattacaattatcatgactgagaaaccatttat 349
||||||||||| || ||| ||||||| |||||||||||||||||||||||
Sbjct: 13151920 cttccatatgtcgggtgggttacaatcatcatgactgagaaaccatttat 13151969
Score = 58.0 bits (29), Expect = 8e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaaggg 54
||||| || ||||| || |||||||||||||| ||||||||||||||||
Sbjct: 13149769 ccagtggttgtggtcctttctggtagcatggagcctggatttaaaaggg 13149817
Score = 52.0 bits (26), Expect = 5e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggt 163
|||||||||||||||||||| ||||| || ||||||||
Sbjct: 13151397 ggccgtgaaattccaattgttcaccgtgtgattaaggt 13151434
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 352 agtacctgctgattggtgcactgggcttgctggtcataacgtcgaaaga 400
|||||||||| || || || ||||||||||||||||| || ||||||||
Sbjct: 13152229 agtacctgctcatcggcgctctgggcttgctggtcattacatcgaaaga 13152277
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 101 bits (51), Expect = 6e-019
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 206 aggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctcca 265
|||||| || |||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct: 9269009 aggtgataacaattttggggatgaccgacttctgtatgcacatgggcagctttggcttca 9268950
Query: 266 gcaacatcacattatgggacgtgctgt 292
||||||||| |||||||| || |||||
Sbjct: 9268949 gcaacatcatattatggggcgagctgt 9268923
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 53 gggtgatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgt 112
|||||| |||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 9269510 gggtgacatcctgtttttgcacatgagcaaagaccctatccgcactggagaaatagttgt 9269451
Query: 113 ttt 115
|||
Sbjct: 9269450 ttt 9269448
Score = 69.9 bits (35), Expect = 2e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaag 52
||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 9269993 ccagtggtggtggttctttctggtagcatggaacctggatttaaaag 9269947
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 303 ccatatgttggctggattacaattatcatgactgagaaaccatttattaag 353
||||||||||| ||| |||||||||||||||||||||| ||| ||||||||
Sbjct: 9268821 ccatatgttggatgggttacaattatcatgactgagaagccaattattaag 9268771
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 160 aggtccatgaacgtcaggacactgcagaagtggacatcctcaccaaaggt 209
|||| |||||||| ||||| | ||||||||| ||||||||||| ||||||
Sbjct: 9269209 aggttcatgaacgccaggagagtgcagaagttgacatcctcacaaaaggt 9269160
Score = 44.1 bits (22), Expect = 0.13
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 126 ggccgtgaaattccaattgtccaccg 151
|||||||||||||||||||| |||||
Sbjct: 9269339 ggccgtgaaattccaattgttcaccg 9269314
>gb|AACV01005675.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005675, whole
genome shotgun sequence
Length = 12678
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
||||||||||||||||| ||||||||| | ||||| || |||||||| ||||||||||||
Sbjct: 7138 gatatcctgtttttgcaaatgagcaaacaccctatacgaacaggagatatagttgttttc 7197
Query: 117 aat 119
|||
Sbjct: 7198 aat 7200
Score = 69.9 bits (35), Expect = 2e-009
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacg 286
||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 7772 cacatgggcagctttggcttcagcaacatcacatcatgggacg 7814
Score = 46.1 bits (23), Expect = 0.032
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtc 164
||||||||||||||||| ||||| ||||| ||| |||||
Sbjct: 7370 ggccgtgaaattccaatcgtccatcgcgttattgaggtc 7408
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
||||||||||||||||| ||||||||| | ||||| || |||||||| ||||||||||||
Sbjct: 1431283 gatatcctgtttttgcaaatgagcaaacaccctatacgaacaggagatatagttgttttc 1431224
Query: 117 aat 119
|||
Sbjct: 1431223 aat 1431221
Score = 69.9 bits (35), Expect = 2e-009
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacg 286
||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 1430649 cacatgggcagctttggcttcagcaacatcacatcatgggacg 1430607
Score = 46.1 bits (23), Expect = 0.032
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtc 164
||||||||||||||||| ||||| ||||| ||| |||||
Sbjct: 1431051 ggccgtgaaattccaatcgtccatcgcgttattgaggtc 1431013
>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0452F04
Length = 171421
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
||||||||||||||||| ||||||||| | ||||| || |||||||| ||||||||||||
Sbjct: 112402 gatatcctgtttttgcaaatgagcaaacaccctatacgaacaggagatatagttgttttc 112343
Query: 117 aat 119
|||
Sbjct: 112342 aat 112340
Score = 69.9 bits (35), Expect = 2e-009
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacg 286
||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 111768 cacatgggcagctttggcttcagcaacatcacatcatgggacg 111726
Score = 46.1 bits (23), Expect = 0.032
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtc 164
||||||||||||||||| ||||| ||||| ||| |||||
Sbjct: 112170 ggccgtgaaattccaatcgtccatcgcgttattgaggtc 112132
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
||||||||||||||||| ||||||||| | ||||| || |||||||| ||||||||||||
Sbjct: 22230308 gatatcctgtttttgcaaatgagcaaacaccctatacgaacaggagatatagttgttttc 22230249
Query: 117 aat 119
|||
Sbjct: 22230248 aat 22230246
Score = 69.9 bits (35), Expect = 2e-009
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacg 286
||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 22229674 cacatgggcagctttggcttcagcaacatcacatcatgggacg 22229632
Score = 46.1 bits (23), Expect = 0.032
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtc 164
||||||||||||||||| ||||| ||||| ||| |||||
Sbjct: 22230076 ggccgtgaaattccaatcgtccatcgcgttattgaggtc 22230038
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
||||||||||||||||| ||||||||| | ||||| || |||||||| ||||||||||||
Sbjct: 35683372 gatatcctgtttttgcaaatgagcaaacaccctatacgaacaggagatatagttgttttc 35683313
Query: 117 aat 119
|||
Sbjct: 35683312 aat 35683310
Score = 69.9 bits (35), Expect = 2e-009
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacg 286
||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 35682738 cacatgggcagctttggcttcagcaacatcacatcatgggacg 35682696
Score = 46.1 bits (23), Expect = 0.032
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtc 164
||||||||||||||||| ||||| ||||| ||| |||||
Sbjct: 35683140 ggccgtgaaattccaatcgtccatcgcgttattgaggtc 35683102
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
||||||||||||||||| ||||||||| | ||||| || |||||||| ||||||||||||
Sbjct: 35596010 gatatcctgtttttgcaaatgagcaaacaccctatacgaacaggagatatagttgttttc 35595951
Query: 117 aat 119
|||
Sbjct: 35595950 aat 35595948
Score = 69.9 bits (35), Expect = 2e-009
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacg 286
||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 35595376 cacatgggcagctttggcttcagcaacatcacatcatgggacg 35595334
Score = 46.1 bits (23), Expect = 0.032
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtc 164
||||||||||||||||| ||||| ||||| ||| |||||
Sbjct: 35595778 ggccgtgaaattccaatcgtccatcgcgttattgaggtc 35595740
>gb|AZ127962.1|AZ127962 OSJNBb0069C21r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0069C21r, DNA
sequence
Length = 787
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttc 116
|||||||| ||| | || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 442 gatatcctttttctacacatgagcaaagatcctatccgcacaggagagatagttgttttc 501
Query: 117 aa 118
||
Sbjct: 502 aa 503
>gb|C72026.1|C72026 C72026 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0815_1A, mRNA sequence
Length = 459
Score = 75.8 bits (38), Expect = 4e-011
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 15 gtggttctctctggtagcatggaacctggatttaaaaggggt 56
|||||||| |||||||||||||||||||||||||||||||||
Sbjct: 412 gtggttctttctggtagcatggaacctggatttaaaaggggt 453
>gb|AQ864837.1|AQ864837 nbeb0024E22r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0024E22r, DNA sequence
Length = 741
Score = 69.9 bits (35), Expect = 2e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaag 52
||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 266 ccagtggtggtggttctttctggtagcatggaacctggatttaaaag 312
>gb|CG206556.1|CG206556 TOS0176 TAMU Rice Japonica Nipponbare BAC Library (Hind III) Oryza
sativa (japonica cultivar-group) genomic clone
TOSJNBh005H01h, DNA sequence
Length = 665
Score = 69.9 bits (35), Expect = 2e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 6 ccagttgtagtggttctctctggtagcatggaacctggatttaaaag 52
||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 401 ccagtggtggtggttctttctggtagcatggaacctggatttaaaag 447
>gb|AQ871828.1|AQ871828 nbeb0044N14r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0044N14r, DNA sequence
Length = 624
Score = 67.9 bits (34), Expect = 9e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 57 gatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttt 114
||||||||||||||||| ||||||||| | ||||| || |||||||| ||||||||||
Sbjct: 155 gatatcctgtttttgcaaatgagcaaacaccctatacgaacaggagatatagttgttt 212
Score = 46.1 bits (23), Expect = 0.032
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 126 ggccgtgaaattccaattgtccaccgcgtaattaaggtc 164
||||||||||||||||| ||||| ||||| ||| |||||
Sbjct: 385 ggccgtgaaattccaatcgtccatcgcgttattgaggtc 423
>gb|AU097132.1|AU097132 AU097132 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2340, mRNA sequence
Length = 299
Score = 61.9 bits (31), Expect = 5e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 342 ccatttattaagtacctgctgattggtgcactgggcttgctggtcataacgtcgaaaga 400
|||||||| ||||||||||| || || || ||||||||||||||||| || ||||||||
Sbjct: 1 ccatttataaagtacctgctcatcggcgctctgggcttgctggtcattacatcgaaaga 59
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,195,165
Number of Sequences: 438736
Number of extensions: 1195165
Number of successful extensions: 6923
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6685
Number of HSP's gapped (non-prelim): 233
length of query: 870
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 849
effective length of database: 2,791,206,460
effective search space: 2369734284540
effective search space used: 2369734284540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)