BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550809.2.1
(876 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01011197.1| Oryza sativa (japonica cultivar-group) c... 400 e-109
ref|NT_107226.1| Oryza sativa (japonica cultivar-group) 400 e-109
gb|AC098835.2| Oryza sativa (japonica cultivar-group) chrom... 400 e-109
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 400 e-109
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 400 e-109
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 400 e-109
dbj|AK062374.1| Oryza sativa (japonica cultivar-group) cDNA... 392 e-106
gb|AACV01010919.1| Oryza sativa (japonica cultivar-group) c... 392 e-106
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 392 e-106
gb|AC087425.2| Oryza sativa (japonica cultivar-group) chrom... 392 e-106
gb|CF324419.1|CF324419 HDN--06-H19.g1 OsHDAC1-overexpressin... 379 e-102
ref|XM_475606.1| Oryza sativa (japonica cultivar-group), p... 379 e-102
ref|XM_476209.1| Oryza sativa (japonica cultivar-group), p... 359 2e-096
gb|CF279969.1|CF279969 14ETL--06-H13.b1 Rice etiolated leaf... 333 9e-089
gb|CF295116.1|CF295116 30DGS--04-O10.b1 Rice leaf plasmid c... 303 8e-080
gb|CF308485.1|CF308485 ABF--02-F07.g1 ABF3-overexpressing t... 272 3e-070
gb|CF295117.1|CF295117 30DGS--04-O10.g1 Rice leaf plasmid c... 212 2e-052
gb|AU083419.1|AU083419 AU083419 Rice callus Oryza sativa (j... 107 1e-020
gb|CF279970.1|CF279970 14ETL--06-H13.g1 Rice etiolated leaf... 80 2e-012
gb|D15125.1|D15125 RICC0119A Rice callus Oryza sativa (japo... 76 4e-011
>gb|AACV01011197.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011197, whole
genome shotgun sequence
Length = 13834
Score = 400 bits (202), Expect = e-109
Identities = 460/546 (84%)
Strand = Plus / Plus
Query: 238 acctgtggaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctg 297
|||||||||||||||||| || |||||||| |||||||||| | |||||||||| |||
Sbjct: 10172 acctgtggaagcagttcatagtggcccaagatagtcaccagccagggtagcaaggatctg 10231
Query: 298 gaattggcggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtc 357
||| ||||| ||||| |||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 10232 gaactggcgatcagcttccatccagcggaaacccatcaccttgaagcgcacagcggtgtc 10291
Query: 358 cttctccagcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgta 417
||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||
Sbjct: 10292 cttctccagcttcgagtggtcattcatgaacatagggttctccccaccgatgtacttgta 10351
Query: 418 attactcatcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacac 477
| |||| | |||||| | |||||||||||| || | ||||| ||||||||||||||
Sbjct: 10352 gtcgctcagtgtcttctctgacaggaagatgctttctattggtccagatttgaggaacac 10411
Query: 478 gccatgcttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctg 537
|||||||||||||||| | ||||| ||||| | || ||| |||||| ||||||||||
Sbjct: 10412 gccatgcttgaggatcttatccacagagccaactaagatctcgcccttcgtaggcttctg 10471
Query: 538 ggtaatgcaagtaaatgaaactgggaacagaacatctccagttagctcacgcactttccc 597
|| ||||| || |||| |||||||| ||||||||||| || ||||| |||||||||||
Sbjct: 10472 tgtgatgcaggtgaatgtcactgggaaaagaacatctccggtcagctcgcgcactttccc 10531
Query: 598 ttcagatattgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccct 657
||| ||||| |||||||||| | | |||||||||||||| ||||| || || || ||| |
Sbjct: 10532 ttctgatatcgccttcagctcactgacagcaatgtagtaaccatgatccttggaggcctt 10591
Query: 658 cctgtgtgtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggccctt 717
||||| || | ||||||||||||| ||||||| |||||||||||||| ||| |||||
Sbjct: 10592 cctgtttgctatctcctccagaagactaacaatgacagccttgcggagcaagagaccctt 10651
Query: 718 gcggtccagctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaac 777
| || ||||| |||||||||||||||||||||||| ||||| || ||| ||| |||||
Sbjct: 10652 ggggctcagctcgctaggtgagatcaacacattccaagacatatccaccttaaggaaaac 10711
Query: 778 catggc 783
||||||
Sbjct: 10712 catggc 10717
>ref|NT_107226.1| Oryza sativa (japonica cultivar-group)
Length = 1041917
Score = 400 bits (202), Expect = e-109
Identities = 460/546 (84%)
Strand = Plus / Minus
Query: 238 acctgtggaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctg 297
|||||||||||||||||| || |||||||| |||||||||| | |||||||||| |||
Sbjct: 268522 acctgtggaagcagttcatagtggcccaagatagtcaccagccagggtagcaaggatctg 268463
Query: 298 gaattggcggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtc 357
||| ||||| ||||| |||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 268462 gaactggcgatcagcttccatccagcggaaacccatcaccttgaagcgcacagcggtgtc 268403
Query: 358 cttctccagcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgta 417
||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||
Sbjct: 268402 cttctccagcttcgagtggtcattcatgaacatagggttctccccaccgatgtacttgta 268343
Query: 418 attactcatcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacac 477
| |||| | |||||| | |||||||||||| || | ||||| ||||||||||||||
Sbjct: 268342 gtcgctcagtgtcttctctgacaggaagatgctttctattggtccagatttgaggaacac 268283
Query: 478 gccatgcttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctg 537
|||||||||||||||| | ||||| ||||| | || ||| |||||| ||||||||||
Sbjct: 268282 gccatgcttgaggatcttatccacagagccaactaagatctcgcccttcgtaggcttctg 268223
Query: 538 ggtaatgcaagtaaatgaaactgggaacagaacatctccagttagctcacgcactttccc 597
|| ||||| || |||| |||||||| ||||||||||| || ||||| |||||||||||
Sbjct: 268222 tgtgatgcaggtgaatgtcactgggaaaagaacatctccggtcagctcgcgcactttccc 268163
Query: 598 ttcagatattgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccct 657
||| ||||| |||||||||| | | |||||||||||||| ||||| || || || ||| |
Sbjct: 268162 ttctgatatcgccttcagctcactgacagcaatgtagtaaccatgatccttggaggcctt 268103
Query: 658 cctgtgtgtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggccctt 717
||||| || | ||||||||||||| ||||||| |||||||||||||| ||| |||||
Sbjct: 268102 cctgtttgctatctcctccagaagactaacaatgacagccttgcggagcaagagaccctt 268043
Query: 718 gcggtccagctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaac 777
| || ||||| |||||||||||||||||||||||| ||||| || ||| ||| |||||
Sbjct: 268042 ggggctcagctcgctaggtgagatcaacacattccaagacatatccaccttaaggaaaac 267983
Query: 778 catggc 783
||||||
Sbjct: 267982 catggc 267977
>gb|AC098835.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1732_H01,
complete sequence
Length = 85722
Score = 400 bits (202), Expect = e-109
Identities = 460/546 (84%)
Strand = Plus / Minus
Query: 238 acctgtggaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctg 297
|||||||||||||||||| || |||||||| |||||||||| | |||||||||| |||
Sbjct: 49956 acctgtggaagcagttcatagtggcccaagatagtcaccagccagggtagcaaggatctg 49897
Query: 298 gaattggcggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtc 357
||| ||||| ||||| |||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 49896 gaactggcgatcagcttccatccagcggaaacccatcaccttgaagcgcacagcggtgtc 49837
Query: 358 cttctccagcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgta 417
||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||
Sbjct: 49836 cttctccagcttcgagtggtcattcatgaacatagggttctccccaccgatgtacttgta 49777
Query: 418 attactcatcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacac 477
| |||| | |||||| | |||||||||||| || | ||||| ||||||||||||||
Sbjct: 49776 gtcgctcagtgtcttctctgacaggaagatgctttctattggtccagatttgaggaacac 49717
Query: 478 gccatgcttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctg 537
|||||||||||||||| | ||||| ||||| | || ||| |||||| ||||||||||
Sbjct: 49716 gccatgcttgaggatcttatccacagagccaactaagatctcgcccttcgtaggcttctg 49657
Query: 538 ggtaatgcaagtaaatgaaactgggaacagaacatctccagttagctcacgcactttccc 597
|| ||||| || |||| |||||||| ||||||||||| || ||||| |||||||||||
Sbjct: 49656 tgtgatgcaggtgaatgtcactgggaaaagaacatctccggtcagctcgcgcactttccc 49597
Query: 598 ttcagatattgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccct 657
||| ||||| |||||||||| | | |||||||||||||| ||||| || || || ||| |
Sbjct: 49596 ttctgatatcgccttcagctcactgacagcaatgtagtaaccatgatccttggaggcctt 49537
Query: 658 cctgtgtgtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggccctt 717
||||| || | ||||||||||||| ||||||| |||||||||||||| ||| |||||
Sbjct: 49536 cctgtttgctatctcctccagaagactaacaatgacagccttgcggagcaagagaccctt 49477
Query: 718 gcggtccagctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaac 777
| || ||||| |||||||||||||||||||||||| ||||| || ||| ||| |||||
Sbjct: 49476 ggggctcagctcgctaggtgagatcaacacattccaagacatatccaccttaaggaaaac 49417
Query: 778 catggc 783
||||||
Sbjct: 49416 catggc 49411
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 400 bits (202), Expect = e-109
Identities = 460/546 (84%)
Strand = Plus / Minus
Query: 238 acctgtggaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctg 297
|||||||||||||||||| || |||||||| |||||||||| | |||||||||| |||
Sbjct: 7448834 acctgtggaagcagttcatagtggcccaagatagtcaccagccagggtagcaaggatctg 7448775
Query: 298 gaattggcggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtc 357
||| ||||| ||||| |||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 7448774 gaactggcgatcagcttccatccagcggaaacccatcaccttgaagcgcacagcggtgtc 7448715
Query: 358 cttctccagcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgta 417
||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||
Sbjct: 7448714 cttctccagcttcgagtggtcattcatgaacatagggttctccccaccgatgtacttgta 7448655
Query: 418 attactcatcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacac 477
| |||| | |||||| | |||||||||||| || | ||||| ||||||||||||||
Sbjct: 7448654 gtcgctcagtgtcttctctgacaggaagatgctttctattggtccagatttgaggaacac 7448595
Query: 478 gccatgcttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctg 537
|||||||||||||||| | ||||| ||||| | || ||| |||||| ||||||||||
Sbjct: 7448594 gccatgcttgaggatcttatccacagagccaactaagatctcgcccttcgtaggcttctg 7448535
Query: 538 ggtaatgcaagtaaatgaaactgggaacagaacatctccagttagctcacgcactttccc 597
|| ||||| || |||| |||||||| ||||||||||| || ||||| |||||||||||
Sbjct: 7448534 tgtgatgcaggtgaatgtcactgggaaaagaacatctccggtcagctcgcgcactttccc 7448475
Query: 598 ttcagatattgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccct 657
||| ||||| |||||||||| | | |||||||||||||| ||||| || || || ||| |
Sbjct: 7448474 ttctgatatcgccttcagctcactgacagcaatgtagtaaccatgatccttggaggcctt 7448415
Query: 658 cctgtgtgtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggccctt 717
||||| || | ||||||||||||| ||||||| |||||||||||||| ||| |||||
Sbjct: 7448414 cctgtttgctatctcctccagaagactaacaatgacagccttgcggagcaagagaccctt 7448355
Query: 718 gcggtccagctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaac 777
| || ||||| |||||||||||||||||||||||| ||||| || ||| ||| |||||
Sbjct: 7448354 ggggctcagctcgctaggtgagatcaacacattccaagacatatccaccttaaggaaaac 7448295
Query: 778 catggc 783
||||||
Sbjct: 7448294 catggc 7448289
Score = 392 bits (198), Expect = e-106
Identities = 453/538 (84%)
Strand = Plus / Minus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||||||| || || ||||| |||||||||| | ||||||||||||||||| |||
Sbjct: 3286218 gaagcagttcatagtggtccaagatagtcaccagccagggtagcaaggagctggaactgg 3286159
Query: 305 cggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtccttctcc 364
|| || || ||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct: 3286158 cgatcggcttccatccagcggaaccccatgaccttgaagcgcacgacggtgtccttctcc 3286099
Query: 365 agcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaattactc 424
||||||||||| || |||||||||| ||| ||||||||||| ||||||||| | | |||
Sbjct: 3286098 agcttcgagtgttcattcatgaacaccgcgttctccccaccaatgtacttgaagtcgctc 3286039
Query: 425 atcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgccatgc 484
|||| |||||| | ||| |||||||| || | ||||| ||||||||||| | |||||||
Sbjct: 3286038 atcgtcttctccgacagaaagatgctttctatcggtccagatttgaggaaaatgccatgc 3285979
Query: 485 ttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggtaatg 544
||||||||| |||||||| ||||| | |||||| ||||||||||||||||| || |||
Sbjct: 3285978 ttgaggatcttgtccacggagccaactaagacctcgcccttcataggcttctgcgtgatg 3285919
Query: 545 caagtaaatgaaactgggaacagaacatctccagttagctcacgcactttcccttcagat 604
|| || || | || ||||| ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 3285918 caggtgaacgtcaccgggaaaagaacgtctccggtcagctcacgcactttcccttctgat 3285859
Query: 605 attgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccctcctgtgt 664
|| |||||||||| | | |||||||||||||| ||||| || || || ||| ||| || |
Sbjct: 3285858 atcgccttcagctcactcacagcaatgtagtaaccatgatccttggaggccttccggttt 3285799
Query: 665 gtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcggtcc 724
| | |||||||||||| || ||||||| |||||||||||||| ||| |||| | || |
Sbjct: 3285798 gctatatcctccagaaggcggacaatgacagccttgcggagcaagagaccctgggggctc 3285739
Query: 725 agctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaaccatgg 782
||||||||||||||||||||||||||| | |||||||| ||| ||| ||||||||||
Sbjct: 3285738 agctggctaggtgagatcaacacattcaaagacatctccaccttaaggaaaaccatgg 3285681
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 400 bits (202), Expect = e-109
Identities = 460/546 (84%)
Strand = Plus / Minus
Query: 238 acctgtggaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctg 297
|||||||||||||||||| || |||||||| |||||||||| | |||||||||| |||
Sbjct: 7448834 acctgtggaagcagttcatagtggcccaagatagtcaccagccagggtagcaaggatctg 7448775
Query: 298 gaattggcggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtc 357
||| ||||| ||||| |||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 7448774 gaactggcgatcagcttccatccagcggaaacccatcaccttgaagcgcacagcggtgtc 7448715
Query: 358 cttctccagcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgta 417
||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||
Sbjct: 7448714 cttctccagcttcgagtggtcattcatgaacatagggttctccccaccgatgtacttgta 7448655
Query: 418 attactcatcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacac 477
| |||| | |||||| | |||||||||||| || | ||||| ||||||||||||||
Sbjct: 7448654 gtcgctcagtgtcttctctgacaggaagatgctttctattggtccagatttgaggaacac 7448595
Query: 478 gccatgcttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctg 537
|||||||||||||||| | ||||| ||||| | || ||| |||||| ||||||||||
Sbjct: 7448594 gccatgcttgaggatcttatccacagagccaactaagatctcgcccttcgtaggcttctg 7448535
Query: 538 ggtaatgcaagtaaatgaaactgggaacagaacatctccagttagctcacgcactttccc 597
|| ||||| || |||| |||||||| ||||||||||| || ||||| |||||||||||
Sbjct: 7448534 tgtgatgcaggtgaatgtcactgggaaaagaacatctccggtcagctcgcgcactttccc 7448475
Query: 598 ttcagatattgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccct 657
||| ||||| |||||||||| | | |||||||||||||| ||||| || || || ||| |
Sbjct: 7448474 ttctgatatcgccttcagctcactgacagcaatgtagtaaccatgatccttggaggcctt 7448415
Query: 658 cctgtgtgtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggccctt 717
||||| || | ||||||||||||| ||||||| |||||||||||||| ||| |||||
Sbjct: 7448414 cctgtttgctatctcctccagaagactaacaatgacagccttgcggagcaagagaccctt 7448355
Query: 718 gcggtccagctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaac 777
| || ||||| |||||||||||||||||||||||| ||||| || ||| ||| |||||
Sbjct: 7448354 ggggctcagctcgctaggtgagatcaacacattccaagacatatccaccttaaggaaaac 7448295
Query: 778 catggc 783
||||||
Sbjct: 7448294 catggc 7448289
Score = 392 bits (198), Expect = e-106
Identities = 453/538 (84%)
Strand = Plus / Minus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||||||| || || ||||| |||||||||| | ||||||||||||||||| |||
Sbjct: 3286218 gaagcagttcatagtggtccaagatagtcaccagccagggtagcaaggagctggaactgg 3286159
Query: 305 cggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtccttctcc 364
|| || || ||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct: 3286158 cgatcggcttccatccagcggaaccccatgaccttgaagcgcacgacggtgtccttctcc 3286099
Query: 365 agcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaattactc 424
||||||||||| || |||||||||| ||| ||||||||||| ||||||||| | | |||
Sbjct: 3286098 agcttcgagtgttcattcatgaacaccgcgttctccccaccaatgtacttgaagtcgctc 3286039
Query: 425 atcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgccatgc 484
|||| |||||| | ||| |||||||| || | ||||| ||||||||||| | |||||||
Sbjct: 3286038 atcgtcttctccgacagaaagatgctttctatcggtccagatttgaggaaaatgccatgc 3285979
Query: 485 ttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggtaatg 544
||||||||| |||||||| ||||| | |||||| ||||||||||||||||| || |||
Sbjct: 3285978 ttgaggatcttgtccacggagccaactaagacctcgcccttcataggcttctgcgtgatg 3285919
Query: 545 caagtaaatgaaactgggaacagaacatctccagttagctcacgcactttcccttcagat 604
|| || || | || ||||| ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 3285918 caggtgaacgtcaccgggaaaagaacgtctccggtcagctcacgcactttcccttctgat 3285859
Query: 605 attgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccctcctgtgt 664
|| |||||||||| | | |||||||||||||| ||||| || || || ||| ||| || |
Sbjct: 3285858 atcgccttcagctcactcacagcaatgtagtaaccatgatccttggaggccttccggttt 3285799
Query: 665 gtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcggtcc 724
| | |||||||||||| || ||||||| |||||||||||||| ||| |||| | || |
Sbjct: 3285798 gctatatcctccagaaggcggacaatgacagccttgcggagcaagagaccctgggggctc 3285739
Query: 725 agctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaaccatgg 782
||||||||||||||||||||||||||| | |||||||| ||| ||| ||||||||||
Sbjct: 3285738 agctggctaggtgagatcaacacattcaaagacatctccaccttaaggaaaaccatgg 3285681
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 400 bits (202), Expect = e-109
Identities = 460/546 (84%)
Strand = Plus / Minus
Query: 238 acctgtggaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctg 297
|||||||||||||||||| || |||||||| |||||||||| | |||||||||| |||
Sbjct: 7530356 acctgtggaagcagttcatagtggcccaagatagtcaccagccagggtagcaaggatctg 7530297
Query: 298 gaattggcggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtc 357
||| ||||| ||||| |||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 7530296 gaactggcgatcagcttccatccagcggaaacccatcaccttgaagcgcacagcggtgtc 7530237
Query: 358 cttctccagcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgta 417
||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||
Sbjct: 7530236 cttctccagcttcgagtggtcattcatgaacatagggttctccccaccgatgtacttgta 7530177
Query: 418 attactcatcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacac 477
| |||| | |||||| | |||||||||||| || | ||||| ||||||||||||||
Sbjct: 7530176 gtcgctcagtgtcttctctgacaggaagatgctttctattggtccagatttgaggaacac 7530117
Query: 478 gccatgcttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctg 537
|||||||||||||||| | ||||| ||||| | || ||| |||||| ||||||||||
Sbjct: 7530116 gccatgcttgaggatcttatccacagagccaactaagatctcgcccttcgtaggcttctg 7530057
Query: 538 ggtaatgcaagtaaatgaaactgggaacagaacatctccagttagctcacgcactttccc 597
|| ||||| || |||| |||||||| ||||||||||| || ||||| |||||||||||
Sbjct: 7530056 tgtgatgcaggtgaatgtcactgggaaaagaacatctccggtcagctcgcgcactttccc 7529997
Query: 598 ttcagatattgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccct 657
||| ||||| |||||||||| | | |||||||||||||| ||||| || || || ||| |
Sbjct: 7529996 ttctgatatcgccttcagctcactgacagcaatgtagtaaccatgatccttggaggcctt 7529937
Query: 658 cctgtgtgtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggccctt 717
||||| || | ||||||||||||| ||||||| |||||||||||||| ||| |||||
Sbjct: 7529936 cctgtttgctatctcctccagaagactaacaatgacagccttgcggagcaagagaccctt 7529877
Query: 718 gcggtccagctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaac 777
| || ||||| |||||||||||||||||||||||| ||||| || ||| ||| |||||
Sbjct: 7529876 ggggctcagctcgctaggtgagatcaacacattccaagacatatccaccttaaggaaaac 7529817
Query: 778 catggc 783
||||||
Sbjct: 7529816 catggc 7529811
Score = 392 bits (198), Expect = e-106
Identities = 453/538 (84%)
Strand = Plus / Minus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||||||| || || ||||| |||||||||| | ||||||||||||||||| |||
Sbjct: 3283938 gaagcagttcatagtggtccaagatagtcaccagccagggtagcaaggagctggaactgg 3283879
Query: 305 cggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtccttctcc 364
|| || || ||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct: 3283878 cgatcggcttccatccagcggaaccccatgaccttgaagcgcacgacggtgtccttctcc 3283819
Query: 365 agcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaattactc 424
||||||||||| || |||||||||| ||| ||||||||||| ||||||||| | | |||
Sbjct: 3283818 agcttcgagtgttcattcatgaacaccgcgttctccccaccaatgtacttgaagtcgctc 3283759
Query: 425 atcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgccatgc 484
|||| |||||| | ||| |||||||| || | ||||| ||||||||||| | |||||||
Sbjct: 3283758 atcgtcttctccgacagaaagatgctttctatcggtccagatttgaggaaaatgccatgc 3283699
Query: 485 ttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggtaatg 544
||||||||| |||||||| ||||| | |||||| ||||||||||||||||| || |||
Sbjct: 3283698 ttgaggatcttgtccacggagccaactaagacctcgcccttcataggcttctgcgtgatg 3283639
Query: 545 caagtaaatgaaactgggaacagaacatctccagttagctcacgcactttcccttcagat 604
|| || || | || ||||| ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 3283638 caggtgaacgtcaccgggaaaagaacgtctccggtcagctcacgcactttcccttctgat 3283579
Query: 605 attgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccctcctgtgt 664
|| |||||||||| | | |||||||||||||| ||||| || || || ||| ||| || |
Sbjct: 3283578 atcgccttcagctcactcacagcaatgtagtaaccatgatccttggaggccttccggttt 3283519
Query: 665 gtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcggtcc 724
| | |||||||||||| || ||||||| |||||||||||||| ||| |||| | || |
Sbjct: 3283518 gctatatcctccagaaggcggacaatgacagccttgcggagcaagagaccctgggggctc 3283459
Query: 725 agctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaaccatgg 782
||||||||||||||||||||||||||| | |||||||| ||| ||| ||||||||||
Sbjct: 3283458 agctggctaggtgagatcaacacattcaaagacatctccaccttaaggaaaaccatgg 3283401
>dbj|AK062374.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-A10, full
insert sequence
Length = 909
Score = 392 bits (198), Expect = e-106
Identities = 453/538 (84%)
Strand = Plus / Minus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||||||| || || ||||| |||||||||| | ||||||||||||||||| |||
Sbjct: 648 gaagcagttcatagtggtccaagatagtcaccagccagggtagcaaggagctggaactgg 589
Query: 305 cggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtccttctcc 364
|| || || ||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct: 588 cgatcggcttccatccagcggaaccccatgaccttgaagcgcacgacggtgtccttctcc 529
Query: 365 agcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaattactc 424
||||||||||| || |||||||||| ||| ||||||||||| ||||||||| | | |||
Sbjct: 528 agcttcgagtgttcattcatgaacaccgcgttctccccaccaatgtacttgaagtcgctc 469
Query: 425 atcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgccatgc 484
|||| |||||| | ||| |||||||| || | ||||| ||||||||||| | |||||||
Sbjct: 468 atcgtcttctccgacagaaagatgctttctatcggtccagatttgaggaaaatgccatgc 409
Query: 485 ttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggtaatg 544
||||||||| |||||||| ||||| | |||||| ||||||||||||||||| || |||
Sbjct: 408 ttgaggatcttgtccacggagccaactaagacctcgcccttcataggcttctgcgtgatg 349
Query: 545 caagtaaatgaaactgggaacagaacatctccagttagctcacgcactttcccttcagat 604
|| || || | || ||||| ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 348 caggtgaacgtcaccgggaaaagaacgtctccggtcagctcacgcactttcccttctgat 289
Query: 605 attgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccctcctgtgt 664
|| |||||||||| | | |||||||||||||| ||||| || || || ||| ||| || |
Sbjct: 288 atcgccttcagctcactcacagcaatgtagtaaccatgatccttggaggccttccggttt 229
Query: 665 gtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcggtcc 724
| | |||||||||||| || ||||||| |||||||||||||| ||| |||| | || |
Sbjct: 228 gctatatcctccagaaggcggacaatgacagccttgcggagcaagagaccctgggggctc 169
Query: 725 agctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaaccatgg 782
||||||||||||||||||||||||||| | |||||||| ||| ||| ||||||||||
Sbjct: 168 agctggctaggtgagatcaacacattcaaagacatctccaccttaaggaaaaccatgg 111
>gb|AACV01010919.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010919, whole
genome shotgun sequence
Length = 34982
Score = 392 bits (198), Expect = e-106
Identities = 453/538 (84%)
Strand = Plus / Plus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||||||| || || ||||| |||||||||| | ||||||||||||||||| |||
Sbjct: 2983 gaagcagttcatagtggtccaagatagtcaccagccagggtagcaaggagctggaactgg 3042
Query: 305 cggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtccttctcc 364
|| || || ||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct: 3043 cgatcggcttccatccagcggaaccccatgaccttgaagcgcacgacggtgtccttctcc 3102
Query: 365 agcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaattactc 424
||||||||||| || |||||||||| ||| ||||||||||| ||||||||| | | |||
Sbjct: 3103 agcttcgagtgttcattcatgaacaccgcgttctccccaccaatgtacttgaagtcgctc 3162
Query: 425 atcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgccatgc 484
|||| |||||| | ||| |||||||| || | ||||| ||||||||||| | |||||||
Sbjct: 3163 atcgtcttctccgacagaaagatgctttctatcggtccagatttgaggaaaatgccatgc 3222
Query: 485 ttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggtaatg 544
||||||||| |||||||| ||||| | |||||| ||||||||||||||||| || |||
Sbjct: 3223 ttgaggatcttgtccacggagccaactaagacctcgcccttcataggcttctgcgtgatg 3282
Query: 545 caagtaaatgaaactgggaacagaacatctccagttagctcacgcactttcccttcagat 604
|| || || | || ||||| ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 3283 caggtgaacgtcaccgggaaaagaacgtctccggtcagctcacgcactttcccttctgat 3342
Query: 605 attgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccctcctgtgt 664
|| |||||||||| | | |||||||||||||| ||||| || || || ||| ||| || |
Sbjct: 3343 atcgccttcagctcactcacagcaatgtagtaaccatgatccttggaggccttccggttt 3402
Query: 665 gtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcggtcc 724
| | |||||||||||| || ||||||| |||||||||||||| ||| |||| | || |
Sbjct: 3403 gctatatcctccagaaggcggacaatgacagccttgcggagcaagagaccctgggggctc 3462
Query: 725 agctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaaccatgg 782
||||||||||||||||||||||||||| | |||||||| ||| ||| ||||||||||
Sbjct: 3463 agctggctaggtgagatcaacacattcaaagacatctccaccttaaggaaaaccatgg 3520
>ref|NT_107216.1| Oryza sativa (japonica cultivar-group)
Length = 2910826
Score = 392 bits (198), Expect = e-106
Identities = 453/538 (84%)
Strand = Plus / Minus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||||||| || || ||||| |||||||||| | ||||||||||||||||| |||
Sbjct: 2374325 gaagcagttcatagtggtccaagatagtcaccagccagggtagcaaggagctggaactgg 2374266
Query: 305 cggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtccttctcc 364
|| || || ||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct: 2374265 cgatcggcttccatccagcggaaccccatgaccttgaagcgcacgacggtgtccttctcc 2374206
Query: 365 agcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaattactc 424
||||||||||| || |||||||||| ||| ||||||||||| ||||||||| | | |||
Sbjct: 2374205 agcttcgagtgttcattcatgaacaccgcgttctccccaccaatgtacttgaagtcgctc 2374146
Query: 425 atcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgccatgc 484
|||| |||||| | ||| |||||||| || | ||||| ||||||||||| | |||||||
Sbjct: 2374145 atcgtcttctccgacagaaagatgctttctatcggtccagatttgaggaaaatgccatgc 2374086
Query: 485 ttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggtaatg 544
||||||||| |||||||| ||||| | |||||| ||||||||||||||||| || |||
Sbjct: 2374085 ttgaggatcttgtccacggagccaactaagacctcgcccttcataggcttctgcgtgatg 2374026
Query: 545 caagtaaatgaaactgggaacagaacatctccagttagctcacgcactttcccttcagat 604
|| || || | || ||||| ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 2374025 caggtgaacgtcaccgggaaaagaacgtctccggtcagctcacgcactttcccttctgat 2373966
Query: 605 attgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccctcctgtgt 664
|| |||||||||| | | |||||||||||||| ||||| || || || ||| ||| || |
Sbjct: 2373965 atcgccttcagctcactcacagcaatgtagtaaccatgatccttggaggccttccggttt 2373906
Query: 665 gtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcggtcc 724
| | |||||||||||| || ||||||| |||||||||||||| ||| |||| | || |
Sbjct: 2373905 gctatatcctccagaaggcggacaatgacagccttgcggagcaagagaccctgggggctc 2373846
Query: 725 agctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaaccatgg 782
||||||||||||||||||||||||||| | |||||||| ||| ||| ||||||||||
Sbjct: 2373845 agctggctaggtgagatcaacacattcaaagacatctccaccttaaggaaaaccatgg 2373788
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05,
complete sequence
Length = 167317
Score = 392 bits (198), Expect = e-106
Identities = 453/538 (84%)
Strand = Plus / Minus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||||||| || || ||||| |||||||||| | ||||||||||||||||| |||
Sbjct: 77762 gaagcagttcatagtggtccaagatagtcaccagccagggtagcaaggagctggaactgg 77703
Query: 305 cggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtccttctcc 364
|| || || ||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct: 77702 cgatcggcttccatccagcggaaccccatgaccttgaagcgcacgacggtgtccttctcc 77643
Query: 365 agcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaattactc 424
||||||||||| || |||||||||| ||| ||||||||||| ||||||||| | | |||
Sbjct: 77642 agcttcgagtgttcattcatgaacaccgcgttctccccaccaatgtacttgaagtcgctc 77583
Query: 425 atcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgccatgc 484
|||| |||||| | ||| |||||||| || | ||||| ||||||||||| | |||||||
Sbjct: 77582 atcgtcttctccgacagaaagatgctttctatcggtccagatttgaggaaaatgccatgc 77523
Query: 485 ttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggtaatg 544
||||||||| |||||||| ||||| | |||||| ||||||||||||||||| || |||
Sbjct: 77522 ttgaggatcttgtccacggagccaactaagacctcgcccttcataggcttctgcgtgatg 77463
Query: 545 caagtaaatgaaactgggaacagaacatctccagttagctcacgcactttcccttcagat 604
|| || || | || ||||| ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 77462 caggtgaacgtcaccgggaaaagaacgtctccggtcagctcacgcactttcccttctgat 77403
Query: 605 attgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccctcctgtgt 664
|| |||||||||| | | |||||||||||||| ||||| || || || ||| ||| || |
Sbjct: 77402 atcgccttcagctcactcacagcaatgtagtaaccatgatccttggaggccttccggttt 77343
Query: 665 gtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcggtcc 724
| | |||||||||||| || ||||||| |||||||||||||| ||| |||| | || |
Sbjct: 77342 gctatatcctccagaaggcggacaatgacagccttgcggagcaagagaccctgggggctc 77283
Query: 725 agctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaaccatgg 782
||||||||||||||||||||||||||| | |||||||| ||| ||| ||||||||||
Sbjct: 77282 agctggctaggtgagatcaacacattcaaagacatctccaccttaaggaaaaccatgg 77225
>gb|CF324419.1|CF324419 HDN--06-H19.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--06-H19, mRNA sequence
Length = 566
Score = 379 bits (191), Expect = e-102
Identities = 422/499 (84%)
Strand = Plus / Minus
Query: 284 gtagcaaggagctggaattggcggtcagcctccatccagcggaaccctaggaccttgaag 343
||||||||||||||||| ||||| || || ||||||||||||||||| | ||||||||||
Sbjct: 562 gtagcaaggagctggaactggcgatcggcttccatccagcggaaccccatgaccttgaag 503
Query: 344 cgcacggcggtgtccttctccagcttcgagtggtcgttcatgaacatcgcattctcccca 403
|||||| ||||||||||||||||||||||||| || |||||||||| ||| |||||||||
Sbjct: 502 cgcacgacggtgtccttctccagcttcgagtgttcattcatgaacaccgcgttctcccca 443
Query: 404 cctatgtacttgtaattactcatcgacttctcagccaggaagatgctctccacgggtccg 463
|| ||||||||| | | ||||||| |||||| | ||| |||||||| || | |||||
Sbjct: 442 ccaatgtacttgaagtcgctcatcgtcttctccgacagaaagatgctttctatcggtcca 383
Query: 464 gatttgaggaacacgccatgcttgaggatcctgtccacgtgcccaaccatgacctctccc 523
||||||||||| | |||||||||||||||| |||||||| ||||| | |||||| |||
Sbjct: 382 gatttgaggaaaatgccatgcttgaggatcttgtccacggagccaactaagacctcgccc 323
Query: 524 ttcataggcttctgggtaatgcaagtaaatgaaactgggaacagaacatctccagttagc 583
|||||||||||||| || ||||| || || | || ||||| ||||| ||||| || |||
Sbjct: 322 ttcataggcttctgcgtgatgcaggtgaacgtcaccgggaaaagaacgtctccggtcagc 263
Query: 584 tcacgcactttcccttcagatattgccttcagctgattaacagcaatgtagtagccatgc 643
||||||||||||||||| ||||| |||||||||| | | |||||||||||||| |||||
Sbjct: 262 tcacgcactttcccttctgatatcgccttcagctcactcacagcaatgtagtaaccatga 203
Query: 644 tctttcgaagccctcctgtgtgtgacatcctccagaagacgcacaatgatagccttgcgg 703
|| || || ||| ||| || || | |||||||||||| || ||||||| ||||||||||
Sbjct: 202 tccttggaggccttccggtttgctatatcctccagaaggcggacaatgacagccttgcgg 143
Query: 704 agcaggaggcccttgcggtccagctggctaggtgagatcaacacattccatgacatctct 763
|||| ||| |||| | || |||||||||||||||||||||||||||| | ||||||||
Sbjct: 142 agcaagagaccctgggggctcagctggctaggtgagatcaacacattcaaagacatctcc 83
Query: 764 gcctcaagaaaaaccatgg 782
||| ||| ||||||||||
Sbjct: 82 accttaaggaaaaccatgg 64
>ref|XM_475606.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 528
Score = 379 bits (191), Expect = e-102
Identities = 431/511 (84%)
Strand = Plus / Minus
Query: 270 agtcaccagcgatcgtagcaaggagctggaattggcggtcagcctccatccagcggaacc 329
|||||||||| | ||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct: 511 agtcaccagccagggtagcaaggagctggaactggcgatcggcttccatccagcggaacc 452
Query: 330 ctaggaccttgaagcgcacggcggtgtccttctccagcttcgagtggtcgttcatgaaca 389
| | |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct: 451 ccatgaccttgaagcgcacgacggtgtccttctccagcttcgagtgttcattcatgaaca 392
Query: 390 tcgcattctccccacctatgtacttgtaattactcatcgacttctcagccaggaagatgc 449
||| ||||||||||| ||||||||| | | ||||||| |||||| | ||| |||||||
Sbjct: 391 ccgcgttctccccaccaatgtacttgaagtcgctcatcgtcttctccgacagaaagatgc 332
Query: 450 tctccacgggtccggatttgaggaacacgccatgcttgaggatcctgtccacgtgcccaa 509
| || | ||||| ||||||||||| | |||||||||||||||| |||||||| ||||
Sbjct: 331 tttctatcggtccagatttgaggaaaatgccatgcttgaggatcttgtccacggagccaa 272
Query: 510 ccatgacctctcccttcataggcttctgggtaatgcaagtaaatgaaactgggaacagaa 569
| | |||||| ||||||||||||||||| || ||||| || || | || ||||| ||||
Sbjct: 271 ctaagacctcgcccttcataggcttctgcgtgatgcaggtgaacgtcaccgggaaaagaa 212
Query: 570 catctccagttagctcacgcactttcccttcagatattgccttcagctgattaacagcaa 629
| ||||| || |||||||||||||||||||| ||||| |||||||||| | | |||||||
Sbjct: 211 cgtctccggtcagctcacgcactttcccttctgatatcgccttcagctcactcacagcaa 152
Query: 630 tgtagtagccatgctctttcgaagccctcctgtgtgtgacatcctccagaagacgcacaa 689
||||||| ||||| || || || ||| ||| || || | |||||||||||| || ||||
Sbjct: 151 tgtagtaaccatgatccttggaggccttccggtttgctatatcctccagaaggcggacaa 92
Query: 690 tgatagccttgcggagcaggaggcccttgcggtccagctggctaggtgagatcaacacat 749
||| |||||||||||||| ||| |||| | || ||||||||||||||||||||||||||
Sbjct: 91 tgacagccttgcggagcaagagaccctgggggctcagctggctaggtgagatcaacacat 32
Query: 750 tccatgacatctctgcctcaagaaaaaccat 780
|| | |||||||| ||| ||| ||||||||
Sbjct: 31 tcaaagacatctccaccttaaggaaaaccat 1
>ref|XM_476209.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2043
Score = 359 bits (181), Expect = 2e-096
Identities = 418/497 (84%)
Strand = Plus / Minus
Query: 284 gtagcaaggagctggaattggcggtcagcctccatccagcggaaccctaggaccttgaag 343
|||||||||| |||||| ||||| ||||| |||||||||||||| || | |||||||||
Sbjct: 497 gtagcaaggatctggaactggcgatcagcttccatccagcggaaacccatcaccttgaag 438
Query: 344 cgcacggcggtgtccttctccagcttcgagtggtcgttcatgaacatcgcattctcccca 403
||||| ||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct: 437 cgcacagcggtgtccttctccagcttcgagtggtcattcatgaacatagggttctcccca 378
Query: 404 cctatgtacttgtaattactcatcgacttctcagccaggaagatgctctccacgggtccg 463
|| ||||||||||| | |||| | |||||| | |||||||||||| || | |||||
Sbjct: 377 ccgatgtacttgtagtcgctcagtgtcttctctgacaggaagatgctttctattggtcca 318
Query: 464 gatttgaggaacacgccatgcttgaggatcctgtccacgtgcccaaccatgacctctccc 523
|||||||||||||||||||||||||||||| | ||||| ||||| | || ||| |||
Sbjct: 317 gatttgaggaacacgccatgcttgaggatcttatccacagagccaactaagatctcgccc 258
Query: 524 ttcataggcttctgggtaatgcaagtaaatgaaactgggaacagaacatctccagttagc 583
||| |||||||||| || ||||| || |||| |||||||| ||||||||||| || |||
Sbjct: 257 ttcgtaggcttctgtgtgatgcaggtgaatgtcactgggaaaagaacatctccggtcagc 198
Query: 584 tcacgcactttcccttcagatattgccttcagctgattaacagcaatgtagtagccatgc 643
|| |||||||||||||| ||||| |||||||||| | | |||||||||||||| |||||
Sbjct: 197 tcgcgcactttcccttctgatatcgccttcagctcactgacagcaatgtagtaaccatga 138
Query: 644 tctttcgaagccctcctgtgtgtgacatcctccagaagacgcacaatgatagccttgcgg 703
|| || || ||| |||||| || | ||||||||||||| ||||||| ||||||||||
Sbjct: 137 tccttggaggccttcctgtttgctatctcctccagaagactaacaatgacagccttgcgg 78
Query: 704 agcaggaggcccttgcggtccagctggctaggtgagatcaacacattccatgacatctct 763
|||| ||| |||||| || ||||| |||||||||||||||||||||||| ||||| ||
Sbjct: 77 agcaagagacccttggggctcagctcgctaggtgagatcaacacattccaagacatatcc 18
Query: 764 gcctcaagaaaaaccat 780
||| ||| ||||||||
Sbjct: 17 accttaaggaaaaccat 1
>gb|CF279969.1|CF279969 14ETL--06-H13.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--06-H13, mRNA sequence
Length = 695
Score = 333 bits (168), Expect = 9e-089
Identities = 448/539 (83%), Gaps = 2/539 (0%)
Strand = Plus / Minus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||||||| || || ||||| |||||||||| | ||||||||||||||||| |||
Sbjct: 659 gaagcagttcatagtggtccaagatagtcaccagccagggtagcaaggagctggaactgg 600
Query: 305 cggtcagcctccatccagcggaaccct-aggaccttgaagcgcacggcggtgtccttctc 363
|| || || ||||||||||||||||| | ||||| || ||||||| ||||||||||| |
Sbjct: 599 cgatcggcttccatccagcggaacccccatgacctgga-gcgcacgacggtgtccttccc 541
Query: 364 cagcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaattact 423
|||||||||||| || |||||||||| || ||||||||||| ||||||||| | | ||
Sbjct: 540 cagcttcgagtgttcattcatgaacacngcgttctccccaccaatgtacttgaagtcgct 481
Query: 424 catcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgccatg 483
||||| |||||| | ||| |||||||| || | ||||| ||||||||||| | ||||||
Sbjct: 480 catcgtcttctccgacagaaagatgctttctatcggtccagatttgaggaaaatgccatg 421
Query: 484 cttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggtaat 543
|| ||||||| |||||||| ||||| | |||||| ||||||||||||||||| || ||
Sbjct: 420 ctagaggatcttgtccacggagccaactaagacctcgcccttcataggcttctgcgtgat 361
Query: 544 gcaagtaaatgaaactgggaacagaacatctccagttagctcacgcactttcccttcaga 603
||| || || | || ||||| ||||| ||||| || |||||||||||||||||||| ||
Sbjct: 360 gcaggtgaacgtcaccgggaaaagaacgtctccggtcagctcacgcactttcccttctga 301
Query: 604 tattgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccctcctgtg 663
||| |||||||||| | | |||||||||||||| ||||| || || || ||| ||| ||
Sbjct: 300 tatcgccttcagctcactcacagcaatgtagtacccatgatccttggaggccttccggtt 241
Query: 664 tgtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcggtc 723
|| | |||||||||||| || ||||||| |||||||||||||| ||| |||| | ||
Sbjct: 240 tgctatatcctccagaaggcggacaatgacagccttgcggagcaagagaccctgggggct 181
Query: 724 cagctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaaccatgg 782
|||||||||||||||||||||||||||| | |||||||| ||| ||| ||||||||||
Sbjct: 180 cagctggctaggtgagatcaacacattcaaagacatctccaccttaaggaaaaccatgg 122
>gb|CF295116.1|CF295116 30DGS--04-O10.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--04-O10, mRNA sequence
Length = 615
Score = 303 bits (153), Expect = 8e-080
Identities = 343/405 (84%), Gaps = 1/405 (0%)
Strand = Plus / Plus
Query: 238 acctgtggaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctg 297
|||||||||||||||||| || |||||||| |||||||||| | |||||||||| |||
Sbjct: 183 acctgtggaagcagttcatagtggcccaagatagtcaccagccagggtagcaaggatctg 242
Query: 298 gaattggcggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtc 357
||| ||||| ||||| |||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 243 gaactggcgatcagcttccatccagcggaaacccatcaccttgaagcgcacagcggtgtc 302
Query: 358 cttctccagcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgta 417
||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||
Sbjct: 303 cttctccagcttcgagtggtcattcatgaacatagggttctccccaccgatgtacttgta 362
Query: 418 attactcatcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacac 477
| |||| | |||||| | |||||||||||| || | ||||| ||||||||||||||
Sbjct: 363 gtcgctcagtgtcttctctgacaggaagatgctttctattggtccagatttgaggaacac 422
Query: 478 gccatgcttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctg 537
|||||||||||||||| | ||||| ||||| | || ||| |||||| ||||||||||
Sbjct: 423 gccatgcttgaggatcttatccacagagccaactaagatctcgcccttcgtaggcttctg 482
Query: 538 ggtaatgcaagtaaatgaaactgggaacagaacatctccagttagctcacgcactttccc 597
|| ||||| || |||| |||||||| || |||||||| || ||||| |||||||||||
Sbjct: 483 tgtgatgcaggtgaatgtcactgggaaaag-acatctccggtcagctcgcgcactttccc 541
Query: 598 ttcagatattgccttcagctgattaacagcaatgtagtagccatg 642
||| ||||| |||||||||| | | |||||||||||||| |||||
Sbjct: 542 ttctgatatcgccttcagctcactgacagcaatgtagtaaccatg 586
>gb|CF308485.1|CF308485 ABF--02-F07.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-F07, mRNA sequence
Length = 595
Score = 272 bits (137), Expect = 3e-070
Identities = 350/421 (83%)
Strand = Plus / Minus
Query: 362 tccagcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaatta 421
|||||||||||||| || |||||||||| ||| ||||||||||| ||||||||| | |
Sbjct: 595 tccagcttcgagtgttcattcatgaacaccgcgttctccccaccaatgtacttgaagtcg 536
Query: 422 ctcatcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgcca 481
||||||| |||||| | ||| | |||||| || | ||||| ||||||||||| | ||||
Sbjct: 535 ctcatcgtcttctccgacagaacgatgctttctatcggtccagatttgaggaaaatgcca 476
Query: 482 tgcttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggta 541
|||||||||||| |||||||| ||||| | |||||| ||||||||||||||||| ||
Sbjct: 475 tgcttgaggatcttgtccacggagccaactaagacctcgcccttcataggcttctgcgtg 416
Query: 542 atgcaagtaaatgaaactgggaacagaacatctccagttagctcacgcactttcccttca 601
||||| || || | || ||||| ||||| ||||| || ||||||||||||||||||||
Sbjct: 415 atgcaggtgaacgtcaccgggaaaagaacgtctccggtcagctcacgcactttcccttct 356
Query: 602 gatattgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccctcctg 661
||||| |||||||||| | | |||||||||||||| ||||| || || || ||| ||| |
Sbjct: 355 gatatcgccttcagctcactcacagcaatgtagtaaccatgatccttggaggccttccgg 296
Query: 662 tgtgtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcgg 721
| || | |||||||||||| || ||||||| |||||||||||||| ||| |||| | ||
Sbjct: 295 tttgctatatcctccagaaggcggacaatgacagccttgcggagcaagagaccctggggg 236
Query: 722 tccagctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaaccatg 781
|||||||||||||||||||||||||||| | |||||||| ||| ||| |||||||||
Sbjct: 235 ctcagctggctaggtgagatcaacacattcaaagacatctccaccttaaggaaaaccatg 176
Query: 782 g 782
|
Sbjct: 175 g 175
>gb|CF295117.1|CF295117 30DGS--04-O10.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--04-O10, mRNA sequence
Length = 529
Score = 212 bits (107), Expect = 2e-052
Identities = 263/315 (83%)
Strand = Plus / Minus
Query: 469 gaggaacacgccatgcttgaggatcctgtccacgtgcccaaccatgacctctcccttcat 528
||||||||||||||||||||||||| | ||||| ||||| | || ||| |||||| |
Sbjct: 529 gaggaacacgccatgcttgaggatcttatccacagagccaactaagatctcgcccttcgt 470
Query: 529 aggcttctgggtaatgcaagtaaatgaaactgggaacagaacatctccagttagctcacg 588
||||||||| || ||||| || |||| |||||||| ||||||||||| || ||||| ||
Sbjct: 469 aggcttctgtgtgatgcaggtgaatgtcactgggaaaagaacatctccggtcagctcgcg 410
Query: 589 cactttcccttcagatattgccttcagctgattaacagcaatgtagtagccatgctcttt 648
|||||||||||| ||||| |||||||||| | | |||||||||||||| ||||| || ||
Sbjct: 409 cactttcccttctgatatcgccttcagctcactgacagcaatgtagtaaccatgatcctt 350
Query: 649 cgaagccctcctgtgtgtgacatcctccagaagacgcacaatgatagccttgcggagcag 708
|| ||| |||||| || | ||||||||||||| ||||||| ||||||||||||||
Sbjct: 349 ggaggccttcctgtttgctatctcctccagaagactaacaatgacagccttgcggagcaa 290
Query: 709 gaggcccttgcggtccagctggctaggtgagatcaacacattccatgacatctctgcctc 768
||| |||||| || ||||| |||||||||||||||||||||||| ||||| || |||
Sbjct: 289 gagacccttggggctcagctcgctaggtgagatcaacacattccaagacatatccacctt 230
Query: 769 aagaaaaaccatggc 783
||| |||||||||||
Sbjct: 229 aaggaaaaccatggc 215
>gb|AU083419.1|AU083419 AU083419 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0119, mRNA sequence
Length = 590
Score = 107 bits (54), Expect = 1e-020
Identities = 152/179 (84%), Gaps = 5/179 (2%)
Strand = Plus / Minus
Query: 314 tccatccagcggaacccta-ggaccttg-aagcgcacgg-cggtgtccttctccagcttc 370
||||||||||||||||| | |||||||| |||||||||| ||||||||||||||||||||
Sbjct: 238 tccatccagcggaaccccatggaccttggaagcgcacggacggtgtccttctccagcttc 179
Query: 371 gagtggtcgttcatgaacatc-gcattctccccacctatgtacttgtaattactcatcga 429
||||| || |||||||||| | || ||||||||||| ||||||||| | | |||||||
Sbjct: 178 gagtgttcattcatgaacaccggcgttctccccaccaatgtacttgaagtcgctcatcgt 119
Query: 430 cttctcagccaggaagatgctctcca-cgggtccggatttgaggaacacgccatgcttg 487
|||||| | ||| |||||||| || | |||||| ||||||||| | | |||| |||||
Sbjct: 118 cttctccgacagaaagatgctttctatngggtccagatttgaggnaaatgccangcttg 60
>gb|CF279970.1|CF279970 14ETL--06-H13.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--06-H13, mRNA sequence
Length = 383
Score = 79.8 bits (40), Expect = 2e-012
Identities = 82/96 (85%)
Strand = Plus / Plus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||||||| || || ||||| |||||||||| | ||||||||||||||||| |||
Sbjct: 285 gaagcagttcatagtggtccaagatagtcaccagccagggtagcaaggagctggaactgg 344
Query: 305 cggtcagcctccatccagcggaaccctaggaccttg 340
|| || || ||||||||||||||||| | |||||||
Sbjct: 345 cgatcggcttccatccagcggaaccccatgaccttg 380
>gb|D15125.1|D15125 RICC0119A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0119A, mRNA sequence
Length = 337
Score = 75.8 bits (38), Expect = 4e-011
Identities = 96/113 (84%), Gaps = 2/113 (1%)
Strand = Plus / Minus
Query: 670 atcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcggtccagctg 729
|||||||||||| || ||||||| |||||| |||||| ||| |||| | || ||||||
Sbjct: 254 atcctccagaag-cggacaatgacagccttn-ggagcaagagaccctgggggctcagctg 197
Query: 730 gctaggtgagatcaacacattccatgacatctctgcctcaagaaaaaccatgg 782
|||||||||||||||||||||| | |||||||| ||| ||| ||||||||||
Sbjct: 196 gctaggtgagatcaacacattcaaagacatctccaccttaaggaaaaccatgg 144
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,334,060
Number of Sequences: 438736
Number of extensions: 1334060
Number of successful extensions: 14960
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14744
Number of HSP's gapped (non-prelim): 177
length of query: 876
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 855
effective length of database: 2,791,206,460
effective search space: 2386481523300
effective search space used: 2386481523300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)