BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550132.2.1
(603 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP003941.1| Oryza sativa (japonica cultivar-group) chro... 278 3e-072
dbj|AK062788.1| Oryza sativa (japonica cultivar-group) cDNA... 278 3e-072
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 278 3e-072
gb|AACV01014457.1| Oryza sativa (japonica cultivar-group) c... 278 3e-072
dbj|AP003617.3| Oryza sativa (japonica cultivar-group) geno... 278 3e-072
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 278 3e-072
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 278 3e-072
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 278 3e-072
dbj|AG211890.1| Oryza sativa (japonica cultivar-group) DNA,... 90 2e-015
dbj|AK101427.1| Oryza sativa (japonica cultivar-group) cDNA... 76 2e-011
ref|NM_192584.1| Oryza sativa (japonica cultivar-group), p... 76 2e-011
gb|AU164501.1|AU164501 AU164501 Rice root Oryza sativa (jap... 70 2e-009
gb|CA755628.1|CA755628 BR030024000_PLATE_H06_48_058.ab1 OA ... 70 2e-009
gb|AU164502.1|AU164502 AU164502 Rice root Oryza sativa (jap... 64 9e-008
gb|AU075854.1|AU075854 AU075854 Rice mature leaf Oryza sati... 60 1e-006
gb|AU162412.1|AU162412 AU162412 Rice root Oryza sativa (jap... 60 1e-006
gb|AU183608.1|AU183608 AU183608 Rice panicle at flowering s... 60 1e-006
gb|CF303810.1|CF303810 ABF1--03-E11.g1 ABF3-overexpressing ... 60 1e-006
dbj|AB037421.1| Oryza sativa (japonica cultivar-group) ALDH... 60 1e-006
dbj|AK105638.1| Oryza sativa (japonica cultivar-group) cDNA... 60 1e-006
dbj|AK119571.1| Oryza sativa (japonica cultivar-group) cDNA... 60 1e-006
dbj|AK121462.1| Oryza sativa (japonica cultivar-group) cDNA... 60 1e-006
dbj|AP003048.2| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
gb|AACV01001715.1| Oryza sativa (japonica cultivar-group) c... 60 1e-006
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
ref|NM_192582.1| Oryza sativa (japonica cultivar-group), p... 60 1e-006
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 60 1e-006
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
gb|AU070169.1|AU070169 AU070169 Rice root Oryza sativa (jap... 52 4e-004
gb|AU075853.1|AU075853 AU075853 Rice mature leaf Oryza sati... 48 0.006
gb|CV152395.1|CV152395 LD83-S.SEQ Cold stressed rice cDNA l... 48 0.006
gb|D39230.1|D39230 RICR3072A Rice root Oryza sativa (japoni... 46 0.022
gb|AU070173.1|AU070173 AU070173 Rice root Oryza sativa (jap... 46 0.022
>dbj|AP003941.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1111_E06,
*** SEQUENCING IN PROGRESS ***
Length = 141036
Score = 278 bits (140), Expect = 3e-072
Identities = 218/244 (89%)
Strand = Plus / Minus
Query: 122 gtgacgacggacttgacggccaggtacttgtcgagcgcgtgcatgccctcgtccttgccg 181
|||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||
Sbjct: 30498 gtgacgacggacttgacggcgaggaacttgtcgagcgcgtgcatgctgtcgtccttgccg 30439
Query: 182 aagccgctcatcttgcggccgccgaaggggcagtcgctgcccatggcgaagtagcagttc 241
|| ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||
Sbjct: 30438 aacccgctcatcttgcggccaccgaacgggcagctcctgtccatggcgaagtagcagttc 30379
Query: 242 acccacaccaccccggcgcgcaccgacctcaccacccggttcgccacgtccaggtcccgc 301
|||||||||||||| || || | ||||||| ||| ||||||||||||||| | ||||| |
Sbjct: 30378 acccacaccacccctgcccggatcgacctcgccatccggttcgccacgtcgatgtccctc 30319
Query: 302 gtcaccacccccgcccccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctcc 361
||||||| ||||||| |||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct: 30318 gtcaccagccccgccgccagcccgtacctcgtcccgttcgccctctcgatcgcctcctcc 30259
Query: 362 accg 365
||||
Sbjct: 30258 accg 30255
Score = 89.7 bits (45), Expect = 2e-015
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||
Sbjct: 30033 cttgaacttcatcaggcacatgacggggccgaagatctcctccctcgcgatgaccatgtc 29974
Query: 427 ctcct 431
||||
Sbjct: 29973 gtcct 29969
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 548 accctctcatactgagccttg 568
|||||||||||||||||||||
Sbjct: 29757 accctctcatactgagccttg 29737
>dbj|AK062788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B11, full
insert sequence
Length = 502
Score = 278 bits (140), Expect = 3e-072
Identities = 218/244 (89%)
Strand = Plus / Minus
Query: 122 gtgacgacggacttgacggccaggtacttgtcgagcgcgtgcatgccctcgtccttgccg 181
|||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||
Sbjct: 326 gtgacgacggacttgacggcgaggaacttgtcgagcgcgtgcatgctgtcgtccttgccg 267
Query: 182 aagccgctcatcttgcggccgccgaaggggcagtcgctgcccatggcgaagtagcagttc 241
|| ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||
Sbjct: 266 aacccgctcatcttgcggccaccgaacgggcagctcctgtccatggcgaagtagcagttc 207
Query: 242 acccacaccaccccggcgcgcaccgacctcaccacccggttcgccacgtccaggtcccgc 301
|||||||||||||| || || | ||||||| ||| ||||||||||||||| | ||||| |
Sbjct: 206 acccacaccacccctgcccggatcgacctcgccatccggttcgccacgtcgatgtccctc 147
Query: 302 gtcaccacccccgcccccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctcc 361
||||||| ||||||| |||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct: 146 gtcaccagccccgccgccagcccgtacctcgtcccgttcgccctctcgatcgcctcctcc 87
Query: 362 accg 365
||||
Sbjct: 86 accg 83
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 278 bits (140), Expect = 3e-072
Identities = 218/244 (89%)
Strand = Plus / Minus
Query: 122 gtgacgacggacttgacggccaggtacttgtcgagcgcgtgcatgccctcgtccttgccg 181
|||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||
Sbjct: 373911 gtgacgacggacttgacggcgaggaacttgtcgagcgcgtgcatgctgtcgtccttgccg 373852
Query: 182 aagccgctcatcttgcggccgccgaaggggcagtcgctgcccatggcgaagtagcagttc 241
|| ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||
Sbjct: 373851 aacccgctcatcttgcggccaccgaacgggcagctcctgtccatggcgaagtagcagttc 373792
Query: 242 acccacaccaccccggcgcgcaccgacctcaccacccggttcgccacgtccaggtcccgc 301
|||||||||||||| || || | ||||||| ||| ||||||||||||||| | ||||| |
Sbjct: 373791 acccacaccacccctgcccggatcgacctcgccatccggttcgccacgtcgatgtccctc 373732
Query: 302 gtcaccacccccgcccccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctcc 361
||||||| ||||||| |||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct: 373731 gtcaccagccccgccgccagcccgtacctcgtcccgttcgccctctcgatcgcctcctcc 373672
Query: 362 accg 365
||||
Sbjct: 373671 accg 373668
Score = 89.7 bits (45), Expect = 2e-015
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||
Sbjct: 373446 cttgaacttcatcaggcacatgacggggccgaagatctcctccctcgcgatgaccatgtc 373387
Query: 427 ctcct 431
||||
Sbjct: 373386 gtcct 373382
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 548 accctctcatactgagccttg 568
|||||||||||||||||||||
Sbjct: 373170 accctctcatactgagccttg 373150
>gb|AACV01014457.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014457, whole
genome shotgun sequence
Length = 8373
Score = 278 bits (140), Expect = 3e-072
Identities = 218/244 (89%)
Strand = Plus / Plus
Query: 122 gtgacgacggacttgacggccaggtacttgtcgagcgcgtgcatgccctcgtccttgccg 181
|||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||
Sbjct: 3133 gtgacgacggacttgacggcgaggaacttgtcgagcgcgtgcatgctgtcgtccttgccg 3192
Query: 182 aagccgctcatcttgcggccgccgaaggggcagtcgctgcccatggcgaagtagcagttc 241
|| ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||
Sbjct: 3193 aacccgctcatcttgcggccaccgaacgggcagctcctgtccatggcgaagtagcagttc 3252
Query: 242 acccacaccaccccggcgcgcaccgacctcaccacccggttcgccacgtccaggtcccgc 301
|||||||||||||| || || | ||||||| ||| ||||||||||||||| | ||||| |
Sbjct: 3253 acccacaccacccctgcccggatcgacctcgccatccggttcgccacgtcgatgtccctc 3312
Query: 302 gtcaccacccccgcccccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctcc 361
||||||| ||||||| |||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct: 3313 gtcaccagccccgccgccagcccgtacctcgtcccgttcgccctctcgatcgcctcctcc 3372
Query: 362 accg 365
||||
Sbjct: 3373 accg 3376
Score = 89.7 bits (45), Expect = 2e-015
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||
Sbjct: 3598 cttgaacttcatcaggcacatgacggggccgaagatctcctccctcgcgatgaccatgtc 3657
Query: 427 ctcct 431
||||
Sbjct: 3658 gtcct 3662
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 548 accctctcatactgagccttg 568
|||||||||||||||||||||
Sbjct: 3874 accctctcatactgagccttg 3894
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0502H06
Length = 165630
Score = 278 bits (140), Expect = 3e-072
Identities = 218/244 (89%)
Strand = Plus / Minus
Query: 122 gtgacgacggacttgacggccaggtacttgtcgagcgcgtgcatgccctcgtccttgccg 181
|||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||
Sbjct: 83307 gtgacgacggacttgacggcgaggaacttgtcgagcgcgtgcatgctgtcgtccttgccg 83248
Query: 182 aagccgctcatcttgcggccgccgaaggggcagtcgctgcccatggcgaagtagcagttc 241
|| ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||
Sbjct: 83247 aacccgctcatcttgcggccaccgaacgggcagctcctgtccatggcgaagtagcagttc 83188
Query: 242 acccacaccaccccggcgcgcaccgacctcaccacccggttcgccacgtccaggtcccgc 301
|||||||||||||| || || | ||||||| ||| ||||||||||||||| | ||||| |
Sbjct: 83187 acccacaccacccctgcccggatcgacctcgccatccggttcgccacgtcgatgtccctc 83128
Query: 302 gtcaccacccccgcccccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctcc 361
||||||| ||||||| |||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct: 83127 gtcaccagccccgccgccagcccgtacctcgtcccgttcgccctctcgatcgcctcctcc 83068
Query: 362 accg 365
||||
Sbjct: 83067 accg 83064
Score = 89.7 bits (45), Expect = 2e-015
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||
Sbjct: 82842 cttgaacttcatcaggcacatgacggggccgaagatctcctccctcgcgatgaccatgtc 82783
Query: 427 ctcct 431
||||
Sbjct: 82782 gtcct 82778
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 548 accctctcatactgagccttg 568
|||||||||||||||||||||
Sbjct: 82566 accctctcatactgagccttg 82546
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 278 bits (140), Expect = 3e-072
Identities = 218/244 (89%)
Strand = Plus / Minus
Query: 122 gtgacgacggacttgacggccaggtacttgtcgagcgcgtgcatgccctcgtccttgccg 181
|||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||
Sbjct: 4243121 gtgacgacggacttgacggcgaggaacttgtcgagcgcgtgcatgctgtcgtccttgccg 4243062
Query: 182 aagccgctcatcttgcggccgccgaaggggcagtcgctgcccatggcgaagtagcagttc 241
|| ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||
Sbjct: 4243061 aacccgctcatcttgcggccaccgaacgggcagctcctgtccatggcgaagtagcagttc 4243002
Query: 242 acccacaccaccccggcgcgcaccgacctcaccacccggttcgccacgtccaggtcccgc 301
|||||||||||||| || || | ||||||| ||| ||||||||||||||| | ||||| |
Sbjct: 4243001 acccacaccacccctgcccggatcgacctcgccatccggttcgccacgtcgatgtccctc 4242942
Query: 302 gtcaccacccccgcccccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctcc 361
||||||| ||||||| |||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct: 4242941 gtcaccagccccgccgccagcccgtacctcgtcccgttcgccctctcgatcgcctcctcc 4242882
Query: 362 accg 365
||||
Sbjct: 4242881 accg 4242878
Score = 89.7 bits (45), Expect = 2e-015
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||
Sbjct: 4242656 cttgaacttcatcaggcacatgacggggccgaagatctcctccctcgcgatgaccatgtc 4242597
Query: 427 ctcct 431
||||
Sbjct: 4242596 gtcct 4242592
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 548 accctctcatactgagccttg 568
|||||||||||||||||||||
Sbjct: 4242380 accctctcatactgagccttg 4242360
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 278 bits (140), Expect = 3e-072
Identities = 218/244 (89%)
Strand = Plus / Minus
Query: 122 gtgacgacggacttgacggccaggtacttgtcgagcgcgtgcatgccctcgtccttgccg 181
|||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||
Sbjct: 21941858 gtgacgacggacttgacggcgaggaacttgtcgagcgcgtgcatgctgtcgtccttgccg 21941799
Query: 182 aagccgctcatcttgcggccgccgaaggggcagtcgctgcccatggcgaagtagcagttc 241
|| ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||
Sbjct: 21941798 aacccgctcatcttgcggccaccgaacgggcagctcctgtccatggcgaagtagcagttc 21941739
Query: 242 acccacaccaccccggcgcgcaccgacctcaccacccggttcgccacgtccaggtcccgc 301
|||||||||||||| || || | ||||||| ||| ||||||||||||||| | ||||| |
Sbjct: 21941738 acccacaccacccctgcccggatcgacctcgccatccggttcgccacgtcgatgtccctc 21941679
Query: 302 gtcaccacccccgcccccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctcc 361
||||||| ||||||| |||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct: 21941678 gtcaccagccccgccgccagcccgtacctcgtcccgttcgccctctcgatcgcctcctcc 21941619
Query: 362 accg 365
||||
Sbjct: 21941618 accg 21941615
Score = 89.7 bits (45), Expect = 2e-015
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||
Sbjct: 21941393 cttgaacttcatcaggcacatgacggggccgaagatctcctccctcgcgatgaccatgtc 21941334
Query: 427 ctcct 431
||||
Sbjct: 21941333 gtcct 21941329
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 548 accctctcatactgagccttg 568
|||||||||||||||||||||
Sbjct: 21941117 accctctcatactgagccttg 21941097
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 278 bits (140), Expect = 3e-072
Identities = 218/244 (89%)
Strand = Plus / Minus
Query: 122 gtgacgacggacttgacggccaggtacttgtcgagcgcgtgcatgccctcgtccttgccg 181
|||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||
Sbjct: 22908485 gtgacgacggacttgacggcgaggaacttgtcgagcgcgtgcatgctgtcgtccttgccg 22908426
Query: 182 aagccgctcatcttgcggccgccgaaggggcagtcgctgcccatggcgaagtagcagttc 241
|| ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||
Sbjct: 22908425 aacccgctcatcttgcggccaccgaacgggcagctcctgtccatggcgaagtagcagttc 22908366
Query: 242 acccacaccaccccggcgcgcaccgacctcaccacccggttcgccacgtccaggtcccgc 301
|||||||||||||| || || | ||||||| ||| ||||||||||||||| | ||||| |
Sbjct: 22908365 acccacaccacccctgcccggatcgacctcgccatccggttcgccacgtcgatgtccctc 22908306
Query: 302 gtcaccacccccgcccccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctcc 361
||||||| ||||||| |||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct: 22908305 gtcaccagccccgccgccagcccgtacctcgtcccgttcgccctctcgatcgcctcctcc 22908246
Query: 362 accg 365
||||
Sbjct: 22908245 accg 22908242
Score = 89.7 bits (45), Expect = 2e-015
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||
Sbjct: 22908020 cttgaacttcatcaggcacatgacggggccgaagatctcctccctcgcgatgaccatgtc 22907961
Query: 427 ctcct 431
||||
Sbjct: 22907960 gtcct 22907956
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 548 accctctcatactgagccttg 568
|||||||||||||||||||||
Sbjct: 22907744 accctctcatactgagccttg 22907724
>dbj|AG211890.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF6027_0_401_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF6027, genomic survey sequence
Length = 560
Score = 89.7 bits (45), Expect = 2e-015
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||
Sbjct: 18 cttgaacttcatcaggcacatgacggggccgaagatctcctccctcgcgatgaccatgtc 77
Query: 427 ctcct 431
||||
Sbjct: 78 gtcct 82
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 548 accctctcatactgagccttg 568
|||||||||||||||||||||
Sbjct: 294 accctctcatactgagccttg 314
>dbj|AK101427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038G01, full
insert sequence
Length = 1961
Score = 75.8 bits (38), Expect = 2e-011
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 350 atcgcctcctccaccggcttgaacttcatcaggcacatgacgggtccgaagatctcctcc 409
|||||||||||||||| |||||||||||| ||| |||| || || ||||||||||||||
Sbjct: 1431 atcgcctcctccaccgtcttgaacttcatgagggacatcaccgggccgaagatctcctct 1372
Query: 410 ttcgctatgatcatgtcctccttgac 435
| ||| || |||| |||||||||||
Sbjct: 1371 tgcgcaatcgtcatttcctccttgac 1346
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctc 271
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 1555 ggcgaagtagcagttcacccacaccgtgccggcccgcactgacctc 1510
>ref|NM_192584.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1524
Score = 75.8 bits (38), Expect = 2e-011
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 350 atcgcctcctccaccggcttgaacttcatcaggcacatgacgggtccgaagatctcctcc 409
|||||||||||||||| |||||||||||| ||| |||| || || ||||||||||||||
Sbjct: 1268 atcgcctcctccaccgtcttgaacttcatgagggacatcaccgggccgaagatctcctct 1209
Query: 410 ttcgctatgatcatgtcctccttgac 435
| ||| || |||| |||||||||||
Sbjct: 1208 tgcgcaatcgtcatttcctccttgac 1183
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctc 271
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 1392 ggcgaagtagcagttcacccacaccgtgccggcccgcactgacctc 1347
>gb|AU164501.1|AU164501 AU164501 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0133, mRNA sequence
Length = 507
Score = 69.9 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 350 atcgcctcctccaccggcttgaacttcatcaggcacatgacgggtccgaagatctcctc 408
|||||||||||||||| |||||||||||| ||| |||| || || ||||||||||||||
Sbjct: 90 atcgcctcctccaccgtcttgaacttcatgagggacatcaccgggccgaagatctcctc 32
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctc 271
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 214 ggcgaagtagcagttcacccacaccgtgccggcccgcactgacctc 169
>gb|CA755628.1|CA755628 BR030024000_PLATE_H06_48_058.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030024000_PLATE_H06_48_058.ab1 similar to putative
cytosolic aldehyde dehydrogenase [Oryza sativa (japonica
cultivar-group)], mRNA sequence
Length = 772
Score = 69.9 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 350 atcgcctcctccaccggcttgaacttcatcaggcacatgacgggtccgaagatctcctc 408
|||||||||||||||| |||||||||||| ||| |||| || || ||||||||||||||
Sbjct: 121 atcgcctcctccaccgtcttgaacttcatgagggacatcaccgggccgaagatctcctc 63
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctc 271
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 245 ggcgaagtagcagttcacccacaccgtgccggcccgcactgacctc 200
>gb|AU164502.1|AU164502 AU164502 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0133, mRNA sequence
Length = 611
Score = 63.9 bits (32), Expect = 9e-008
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 350 atcgcctcctccaccggcttgaacttcatcaggcacatga-cgggtccgaagatctcctc 408
|||||||||||||||| |||||||||||| ||| |||| | |||| ||||||||||||||
Sbjct: 90 atcgcctcctccaccgtcttgaacttcatgagggacatcaccgggcccgaagatctcctc 31
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctc 271
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 214 ggcgaagtagcagttcacccacaccgtgccggcccgcactgacctc 169
>gb|AU075854.1|AU075854 AU075854 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S20436_2Z, mRNA sequence
Length = 712
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 495 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 442
Score = 48.1 bits (24), Expect = 0.006
Identities = 117/148 (79%)
Strand = Plus / Minus
Query: 318 ccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctccaccggcttgaacttca 377
|||| |||||||| ||| ||||||| || |||||||||||| |||| |||||| ||||
Sbjct: 320 ccaggccgtaccgggtgctgttcgccttctggatcgcctcctcaaccgtcttgaatttca 261
Query: 378 tcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtcctccttgacgt 437
| ||| ||| || || |||||||| ||||| | ||| || ||| || ||||||||||
Sbjct: 260 tgagggccatcaccggcccgaagatttcctcttgcgcgatcgacatttcttccttgacgt 201
Query: 438 tggtgaaaactgtgggctcaatgtagta 465
||||| | |||||||| ||||||||
Sbjct: 200 ccgtgaagatggtgggctcgatgtagta 173
>gb|AU162412.1|AU162412 AU162412 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1467, mRNA sequence
Length = 584
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 371 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 318
Score = 42.1 bits (21), Expect = 0.34
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 318 ccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctccaccggcttgaacttca 377
|||| |||||||| ||| ||||||| || |||||||||||| |||| |||||| ||||
Sbjct: 194 ccaggccgtaccgggtgctgttcgccttctggatcgcctcctcaaccgtcttgaatttca 135
Query: 378 t 378
|
Sbjct: 134 t 134
>gb|AU183608.1|AU183608 AU183608 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1762, mRNA sequence
Length = 589
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 376 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 323
Score = 48.1 bits (24), Expect = 0.006
Identities = 117/148 (79%)
Strand = Plus / Minus
Query: 318 ccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctccaccggcttgaacttca 377
|||| |||||||| ||| ||||||| || |||||||||||| |||| |||||| ||||
Sbjct: 201 ccaggccgtaccgggtgctgttcgccttctggatcgcctcctcaaccgtcttgaatttca 142
Query: 378 tcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtcctccttgacgt 437
| ||| ||| || || |||||||| ||||| | ||| || ||| || ||||||||||
Sbjct: 141 tgagggccatcaccggcccgaagatttcctcttgcgcgatcgacatttcttccttgacgt 82
Query: 438 tggtgaaaactgtgggctcaatgtagta 465
||||| | |||||||| ||||||||
Sbjct: 81 ccgtgaagatggtgggctcgatgtagta 54
>gb|CF303810.1|CF303810 ABF1--03-E11.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--03-E11, mRNA sequence
Length = 455
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 312 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 365
>dbj|AB037421.1| Oryza sativa (japonica cultivar-group) ALDH1a mRNA for cytosolic
aldehyde dehydrogenase, complete cds
Length = 1751
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 1522 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 1469
Score = 48.1 bits (24), Expect = 0.006
Identities = 117/148 (79%)
Strand = Plus / Minus
Query: 318 ccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctccaccggcttgaacttca 377
|||| |||||||| ||| ||||||| || |||||||||||| |||| |||||| ||||
Sbjct: 1347 ccaggccgtaccgggtgctgttcgccttctggatcgcctcctcaaccgtcttgaatttca 1288
Query: 378 tcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtcctccttgacgt 437
| ||| ||| || || |||||||| ||||| | ||| || ||| || ||||||||||
Sbjct: 1287 tgagggccatcaccggcccgaagatttcctcttgcgcgatcgacatttcttccttgacgt 1228
Query: 438 tggtgaaaactgtgggctcaatgtagta 465
||||| | |||||||| ||||||||
Sbjct: 1227 ccgtgaagatggtgggctcgatgtagta 1200
>dbj|AK105638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-E03, full
insert sequence
Length = 1729
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 1531 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 1478
Score = 42.1 bits (21), Expect = 0.34
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 318 ccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctccaccggcttgaacttca 377
|||| |||||||| ||| ||||||| || |||||||||||| |||| |||||| ||||
Sbjct: 1356 ccaggccgtaccgggtgctgttcgccttctggatcgcctcctcaaccgtcttgaatttca 1297
Query: 378 t 378
|
Sbjct: 1296 t 1296
>dbj|AK119571.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-A10, full
insert sequence
Length = 1854
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 1576 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 1523
Score = 48.1 bits (24), Expect = 0.006
Identities = 117/148 (79%)
Strand = Plus / Minus
Query: 318 ccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctccaccggcttgaacttca 377
|||| |||||||| ||| ||||||| || |||||||||||| |||| |||||| ||||
Sbjct: 1401 ccaggccgtaccgggtgctgttcgccttctggatcgcctcctcaaccgtcttgaatttca 1342
Query: 378 tcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtcctccttgacgt 437
| ||| ||| || || |||||||| ||||| | ||| || ||| || ||||||||||
Sbjct: 1341 tgagggccatcaccggcccgaagatttcctcttgcgcgatcgacatttcttccttgacgt 1282
Query: 438 tggtgaaaactgtgggctcaatgtagta 465
||||| | |||||||| ||||||||
Sbjct: 1281 ccgtgaagatggtgggctcgatgtagta 1254
>dbj|AK121462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144F17, full
insert sequence
Length = 1732
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 1534 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 1481
Score = 48.1 bits (24), Expect = 0.006
Identities = 117/148 (79%)
Strand = Plus / Minus
Query: 318 ccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctccaccggcttgaacttca 377
|||| |||||||| ||| ||||||| || |||||||||||| |||| |||||| ||||
Sbjct: 1359 ccaggccgtaccgggtgctgttcgccttctggatcgcctcctcaaccgtcttgaatttca 1300
Query: 378 tcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtcctccttgacgt 437
| ||| ||| || || |||||||| ||||| | ||| || ||| || ||||||||||
Sbjct: 1299 tgagggccatcaccggcccgaagatttcctcttgcgcgatcgacatttcttccttgacgt 1240
Query: 438 tggtgaaaactgtgggctcaatgtagta 465
||||| | |||||||| ||||||||
Sbjct: 1239 ccgtgaagatggtgggctcgatgtagta 1212
>dbj|AP003048.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0710A02
Length = 157201
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 34293 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 34240
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctc 271
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 47568 ggcgaagtagcagttcacccacaccgtgccggcccgcactgacctc 47523
Score = 44.1 bits (22), Expect = 0.086
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctc 408
|||||||||||| ||| |||| || || ||||||||||||||
Sbjct: 47315 cttgaacttcatgagggacatcaccgggccgaagatctcctc 47274
>gb|AACV01001715.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001715, whole
genome shotgun sequence
Length = 24589
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 6314 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 6261
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctc 271
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 19565 ggcgaagtagcagttcacccacaccgtgccggcccgcactgacctc 19520
Score = 44.1 bits (22), Expect = 0.086
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctc 408
|||||||||||| ||| |||| || || ||||||||||||||
Sbjct: 19312 cttgaacttcatgagggacatcaccgggccgaagatctcctc 19271
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 23180851 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 23180798
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctc 271
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 23194126 ggcgaagtagcagttcacccacaccgtgccggcccgcactgacctc 23194081
Score = 44.1 bits (22), Expect = 0.086
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctc 408
|||||||||||| ||| |||| || || ||||||||||||||
Sbjct: 23193873 cttgaacttcatgagggacatcaccgggccgaagatctcctc 23193832
>ref|NM_192582.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1509
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 1460 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 1407
Score = 48.1 bits (24), Expect = 0.006
Identities = 117/148 (79%)
Strand = Plus / Minus
Query: 318 ccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctccaccggcttgaacttca 377
|||| |||||||| ||| ||||||| || |||||||||||| |||| |||||| ||||
Sbjct: 1285 ccaggccgtaccgggtgctgttcgccttctggatcgcctcctcaaccgtcttgaatttca 1226
Query: 378 tcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtcctccttgacgt 437
| ||| ||| || || |||||||| ||||| | ||| || ||| || ||||||||||
Sbjct: 1225 tgagggccatcaccggcccgaagatttcctcttgcgcgatcgacatttcttccttgacgt 1166
Query: 438 tggtgaaaactgtgggctcaatgtagta 465
||||| | |||||||| ||||||||
Sbjct: 1165 ccgtgaagatggtgggctcgatgtagta 1138
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 6099083 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 6099030
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctc 271
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 6112358 ggcgaagtagcagttcacccacaccgtgccggcccgcactgacctc 6112313
Score = 44.1 bits (22), Expect = 0.086
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctc 408
|||||||||||| ||| |||| || || ||||||||||||||
Sbjct: 6112105 cttgaacttcatgagggacatcaccgggccgaagatctcctc 6112064
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 6026461 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 6026408
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctc 271
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 6039712 ggcgaagtagcagttcacccacaccgtgccggcccgcactgacctc 6039667
Score = 44.1 bits (22), Expect = 0.086
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctc 408
|||||||||||| ||| |||| || || ||||||||||||||
Sbjct: 6039459 cttgaacttcatgagggacatcaccgggccgaagatctcctc 6039418
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 22651584 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 22651531
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctc 271
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 22664835 ggcgaagtagcagttcacccacaccgtgccggcccgcactgacctc 22664790
Score = 44.1 bits (22), Expect = 0.086
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctc 408
|||||||||||| ||| |||| || || ||||||||||||||
Sbjct: 22664582 cttgaacttcatgagggacatcaccgggccgaagatctcctc 22664541
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||||||||||||||||||
Sbjct: 23102134 aggtacttctcaagggcgtccatgcccatgtccttgccgaagccgctcatcttg 23102081
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctc 271
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 23115409 ggcgaagtagcagttcacccacaccgtgccggcccgcactgacctc 23115364
Score = 44.1 bits (22), Expect = 0.086
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctc 408
|||||||||||| ||| |||| || || ||||||||||||||
Sbjct: 23115156 cttgaacttcatgagggacatcaccgggccgaagatctcctc 23115115
>gb|AU070169.1|AU070169 AU070169 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0094_21A, mRNA sequence
Length = 502
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctc 271
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 130 ggcgaagtagcagttcacccacaccgtgccggcccgcactgacctc 85
>gb|AU075853.1|AU075853 AU075853 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S20436_1A, mRNA sequence
Length = 507
Score = 48.1 bits (24), Expect = 0.006
Identities = 117/148 (79%)
Strand = Plus / Minus
Query: 318 ccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcctccaccggcttgaacttca 377
|||| |||||||| ||| ||||||| || |||||||||||| |||| |||||| ||||
Sbjct: 285 ccaggccgtaccgggtgctgttcgccttctggatcgcctcctcaaccgtcttgaatttca 226
Query: 378 tcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtcctccttgacgt 437
| ||| ||| || || |||||||| ||||| | ||| || ||| || ||||||||||
Sbjct: 225 tgagggccatcaccggcccgaagatttcctcttgcgcgatcgacatttcttccttgacgt 166
Query: 438 tggtgaaaactgtgggctcaatgtagta 465
||||| | |||||||| ||||||||
Sbjct: 165 ccgtgaagatggtgggctcgatgtagta 138
Score = 46.1 bits (23), Expect = 0.022
Identities = 48/55 (87%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 143 aggtacttgtcgagcgcgtgcatgccctcgtccttgccg-aagccgctcatcttg 196
|||||||| || || |||| ||||||| |||||||||| |||||||||||||||
Sbjct: 464 aggtacttctcaagggcgtccatgcccatgtccttgccgaaagccgctcatcttg 410
>gb|CV152395.1|CV152395 LD83-S.SEQ Cold stressed rice cDNA library Oryza sativa (japonica
cultivar-group) cDNA, mRNA sequence
Length = 650
Score = 48.1 bits (24), Expect = 0.006
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 350 atcgcctcctccaccggcttgaacttcatcaggcacatgacgggtccgaagatctcctcc 409
||||| || ||||| | |||||||||||| ||| |||| || || ||||||||||| ||
Sbjct: 635 atcgcttcttccacngtcttgaacttcatgagggacatcaccggnccgaagatctcttct 576
Query: 410 ttcgctatgatcatgtcctccttgac 435
| ||| || |||| |||||||||||
Sbjct: 575 tgcgcaatcgtcatttcctccttgac 550
>gb|D39230.1|D39230 RICR3072A Rice root Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 343
Score = 46.1 bits (23), Expect = 0.022
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccaca 248
|||||||||||||||||||||||
Sbjct: 47 ggcgaagtagcagttcacccaca 25
>gb|AU070173.1|AU070173 AU070173 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0506_11A, mRNA sequence
Length = 500
Score = 46.1 bits (23), Expect = 0.022
Identities = 114/143 (79%), Gaps = 1/143 (0%)
Strand = Plus / Minus
Query: 323 ccgtaccgcgtgtcgttcgccctcgcgatcgcctcctccaccggcttgaacttcatcagg 382
|||||||| ||| ||||||| || |||||||||||| |||| |||||| ||||| |||
Sbjct: 497 ccgtaccgggtgctgttcgccttctggatcgcctcctcaaccgtcttgaatttcatgagg 438
Query: 383 cacatgacgggtccgaagatctcctccttcgctatgatcatgtcctccttgacgttggtg 442
| ||| || || |||||||| ||||| | ||| || ||| || |||||||||| |||
Sbjct: 437 c-catcaccggcccgaagatttcctcttgcgcgatcgacatttcttccttgacgtccgtg 379
Query: 443 aaaactgtgggctcaatgtagta 465
|| | |||||||| ||||||||
Sbjct: 378 aagatggtgggctcgatgtagta 356
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 932,963
Number of Sequences: 438736
Number of extensions: 932963
Number of successful extensions: 25915
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25376
Number of HSP's gapped (non-prelim): 537
length of query: 603
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 582
effective length of database: 2,791,206,460
effective search space: 1624482159720
effective search space used: 1624482159720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)