BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2542512.2.1
(834 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK066760.1| Oryza sativa (japonica cultivar-group) cDNA... 147 1e-032
dbj|AK104825.1| Oryza sativa (japonica cultivar-group) cDNA... 147 1e-032
gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 ... 147 1e-032
gb|AACV01007961.1| Oryza sativa (japonica cultivar-group) c... 147 1e-032
ref|XM_469850.1| Oryza sativa (japonica cultivar-group), mRNA 147 1e-032
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 147 1e-032
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 147 1e-032
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 147 1e-032
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 147 1e-032
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 147 1e-032
ref|XM_469849.1| Oryza sativa (japonica cultivar-group), mRNA 113 2e-022
gb|CB660342.1|CB660342 OSJNEd01P15.r OSJNEd Oryza sativa (j... 111 6e-022
gb|AQ288789.1|AQ288789 nbxb0033H21r CUGI Rice BAC Library O... 105 4e-020
gb|C97610.1|C97610 C97610 Rice callus Oryza sativa (japonic... 96 4e-017
gb|CF329812.1|CF329812 NACL--05-E11.g1 Rice callus plasmid ... 76 3e-011
gb|AU070733.1|AU070733 AU070733 Rice cDNA from young root O... 66 3e-008
gb|CB654797.1|CB654797 OSJNEc07J11.f OSJNEc Oryza sativa (j... 64 1e-007
gb|CB654798.1|CB654798 OSJNEc07J11.r OSJNEc Oryza sativa (j... 64 1e-007
dbj|AK072861.1| Oryza sativa (japonica cultivar-group) cDNA... 64 1e-007
dbj|AP006461.3| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|AACV01018675.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
ref|XM_482839.1| Oryza sativa (japonica cultivar-group), mRNA 64 1e-007
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 64 1e-007
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|AU071096.1|AU071096 AU071096 Rice cDNA from young root O... 56 3e-005
gb|CB659650.1|CB659650 OSJNEc16M24.r OSJNEc Oryza sativa (j... 56 3e-005
gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbar... 56 3e-005
gb|AC144427.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP003623.3| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|AACV01006705.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
gb|AACV01014488.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|CB672252.1|CB672252 OSJNEe06D05.r OSJNEe Oryza sativa (j... 54 1e-004
dbj|AK100633.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AK110565.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
emb|AL731578.2|OSJN00229 Oryza sativa genomic DNA, chromoso... 54 1e-004
emb|AL606630.3|OSJN00041 Oryza sativa genomic DNA, chromoso... 54 1e-004
dbj|AP005308.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AP005575.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AACV01009000.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
gb|AACV01020124.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
ref|XM_469852.1| Oryza sativa (japonica cultivar-group), mRNA 54 1e-004
ref|XM_471339.1| Oryza sativa (japonica cultivar-group), p... 54 1e-004
ref|NT_079855.2| Oryza sativa (japonica cultivar-group) 54 1e-004
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 54 1e-004
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AK106672.1| Oryza sativa (japonica cultivar-group) cDNA... 52 5e-004
dbj|AP003571.4| Oryza sativa (japonica cultivar-group) geno... 52 5e-004
gb|AACV01014489.1| Oryza sativa (japonica cultivar-group) c... 52 5e-004
gb|AACV01014652.1| Oryza sativa (japonica cultivar-group) c... 52 5e-004
dbj|AP003612.2| Oryza sativa (japonica cultivar-group) geno... 52 5e-004
gb|C97611.1|C97611 C97611 Rice callus Oryza sativa (japonic... 50 0.002
gb|CB658258.1|CB658258 OSJNEc14C17.r OSJNEc Oryza sativa (j... 50 0.002
dbj|AK100972.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK105745.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK105913.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AP005835.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP006069.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01004726.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01008369.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|XM_466336.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
ref|XM_470946.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|NT_107194.1| Oryza sativa (japonica cultivar-group) 50 0.002
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401182.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromoso... 50 0.002
emb|BX842604.1|OSJN00294 Oryza sativa genomic DNA, chromoso... 50 0.002
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AU176462.1|AU176462 AU176462 Rice panicle at ripening st... 48 0.008
gb|CB652233.1|CB652233 OSJNEc01O11.f OSJNEc Oryza sativa (j... 48 0.008
dbj|AK060722.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.008
dbj|AK069701.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.008
dbj|AK106229.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.008
emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC O... 48 0.008
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 48 0.008
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 48 0.008
dbj|AP005472.2| Oryza sativa (japonica cultivar-group) geno... 48 0.008
dbj|AP004684.3| Oryza sativa (japonica cultivar-group) geno... 48 0.008
gb|AACV01004723.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
gb|AACV01010945.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
gb|AACV01014086.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
ref|XM_466327.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.008
gb|CH401214.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 48 0.008
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CB650254.1|CB650254 OSJNEb14J19.r OSJNEb Oryza sativa (j... 46 0.030
gb|CB652379.1|CB652379 OSJNEc02D15.r OSJNEc Oryza sativa (j... 46 0.030
gb|CB652381.1|CB652381 OSJNEc02D16.r OSJNEc Oryza sativa (j... 46 0.030
gb|CB652383.1|CB652383 OSJNEc02D17.r OSJNEc Oryza sativa (j... 46 0.030
gb|CB655043.1|CB655043 OSJNEc08B07.r OSJNEc Oryza sativa (j... 46 0.030
gb|CB659217.1|CB659217 OSJNEc16A08.f OSJNEc Oryza sativa (j... 46 0.030
gb|CB666330.1|CB666330 OSJNEd13D02.r OSJNEd Oryza sativa (j... 46 0.030
gb|CB675220.1|CB675220 OSJNEe10M22.r OSJNEe Oryza sativa (j... 46 0.030
dbj|AP004142.1| Oryza sativa (japonica cultivar-group) chro... 46 0.030
dbj|AK064029.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
dbj|AK105841.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
dbj|AK107666.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
dbj|AP004617.2| Oryza sativa (japonica cultivar-group) geno... 46 0.030
dbj|AK120444.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
dbj|AK120674.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
dbj|AK122077.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
dbj|AK122138.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 ... 46 0.030
dbj|AP005797.3| Oryza sativa (japonica cultivar-group) geno... 46 0.030
dbj|AP005826.3| Oryza sativa (japonica cultivar-group) geno... 46 0.030
dbj|AP005682.2| Oryza sativa (japonica cultivar-group) geno... 46 0.030
gb|AC104285.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.030
gb|AACV01003641.1| Oryza sativa (japonica cultivar-group) c... 46 0.030
gb|AACV01006918.1| Oryza sativa (japonica cultivar-group) c... 46 0.030
gb|AACV01010741.1| Oryza sativa (japonica cultivar-group) c... 46 0.030
gb|AACV01018515.1| Oryza sativa (japonica cultivar-group) c... 46 0.030
gb|AACV01020440.1| Oryza sativa (japonica cultivar-group) c... 46 0.030
gb|AACV01025360.1| Oryza sativa (japonica cultivar-group) c... 46 0.030
ref|XM_464704.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.030
ref|XM_464705.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.030
ref|XM_468710.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.030
ref|XM_469851.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.030
ref|XM_482511.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.030
ref|XM_506761.1| PREDICTED Oryza sativa (japonica cultivar-... 46 0.030
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 46 0.030
ref|NT_079870.2| Oryza sativa (japonica cultivar-group) 46 0.030
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 46 0.030
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 46 0.030
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.030
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.030
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.030
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 46 0.030
gb|AQ328148.1|AQ328148 nbxb0042D19f CUGI Rice BAC Library O... 44 0.12
gb|AF488522.1| Oryza sativa Cyt-P450 monooxygenase (PM-II) ... 44 0.12
dbj|AK102040.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AP005254.3| Oryza sativa (japonica cultivar-group) geno... 44 0.12
dbj|AP005816.3| Oryza sativa (japonica cultivar-group) geno... 44 0.12
gb|AACV01014651.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
gb|AACV01018826.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
ref|XM_483266.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.12
gb|CF324723.1|CF324723 JMT1--01-E21.g1 AtJMT-overexpressing... 42 0.47
dbj|AK069494.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.47
dbj|AK100163.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.47
dbj|AK111468.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.47
dbj|AP005737.3| Oryza sativa (japonica cultivar-group) geno... 42 0.47
dbj|AP005285.2| Oryza sativa (japonica cultivar-group) geno... 42 0.47
dbj|AP005252.5| Oryza sativa (japonica cultivar-group) geno... 42 0.47
gb|AACV01001578.1| Oryza sativa (japonica cultivar-group) c... 42 0.47
gb|AACV01004418.1| Oryza sativa (japonica cultivar-group) c... 42 0.47
gb|AACV01004420.1| Oryza sativa (japonica cultivar-group) c... 42 0.47
gb|AACV01016041.1| Oryza sativa (japonica cultivar-group) c... 42 0.47
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.47
ref|NM_193526.1| Oryza sativa (japonica cultivar-group), p... 42 0.47
ref|XM_465865.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.47
ref|XM_465866.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.47
ref|XM_477917.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.47
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 42 0.47
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 42 0.47
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 42 0.47
dbj|AP003267.3| Oryza sativa (japonica cultivar-group) geno... 42 0.47
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.47
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.47
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.47
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.47
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.47
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.47
>dbj|AK066760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075G04, full
insert sequence
Length = 1867
Score = 147 bits (74), Expect = 1e-032
Identities = 354/446 (79%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 196 ggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctg 255
|||||||| |||||| || ||| |||||||| ||||||||||| | || ||| ||||
Sbjct: 1137 ggctacctccagtgcatcgtcagggagacgctccgcctgtaccccgccgcgccgatgctc 1196
Query: 256 ctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacg 315
|| ||||||||||| | || ||||||| ||||||||||||| | | || ||||| ||
Sbjct: 1197 ctcccgcacgagtcctccgccgactgcaaggtcggcggctacaacatcccgcgcgggtcg 1256
Query: 316 ctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccgga 375
|| || || ||| ||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 1257 atgttgctcatca-acgcgtacgccatccaccgtgacccggcggtgtgggaggagccgga 1315
Query: 376 cgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgtt 435
|||||| ||||||| ||||| |||||| | ||| ||| || || |||||||
Sbjct: 1316 gaagttcatgccggagaggttcgaggacggcgggtgcgacggcaatctcttgatgccgtt 1375
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| |||| ||||||||||| |||||||| || ||||| || | || | ||
Sbjct: 1376 cgggatggggaggcggaggtgccccggcgagacgctggcgctgcgcacagtggggttggt 1435
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||| | |||||| |||||||||||| ||||||| || |||| |||| ||| |||||||
Sbjct: 1436 gctgggcacgctgatccagtgcttcgactgggagagggtcgacggcgtggaggtcgacat 1495
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
||| || | |||||||||||||| ||| || ||| ||||||||||||| |||| |||
Sbjct: 1496 gactgaaggtggcgggctcaccatccccaaggtcgtgccgttggaggccatgtgcaggcc 1555
Query: 616 tcgcgaagccatgcgtcatgttcttc 641
||||| |||||| || ||||||||
Sbjct: 1556 gcgcgacgccatgggtggtgttcttc 1581
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 79 agaatgggccatgtcgctgctgctgaaccaccc 111
||||||||| |||||||| ||||||||||||||
Sbjct: 1019 agaatgggcgatgtcgctactgctgaaccaccc 1051
>dbj|AK104825.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F09, full
insert sequence
Length = 1860
Score = 147 bits (74), Expect = 1e-032
Identities = 354/446 (79%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 196 ggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctg 255
|||||||| |||||| || ||| |||||||| ||||||||||| | || ||| ||||
Sbjct: 1136 ggctacctccagtgcatcgtcagggagacgctccgcctgtaccccgccgcgccgatgctc 1195
Query: 256 ctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacg 315
|| ||||||||||| | || ||||||| ||||||||||||| | | || ||||| ||
Sbjct: 1196 ctcccgcacgagtcctccgccgactgcaaggtcggcggctacaacatcccgcgcgggtcg 1255
Query: 316 ctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccgga 375
|| || || ||| ||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 1256 atgttgctcatca-acgcgtacgccatccaccgtgacccggcggtgtgggaggagccgga 1314
Query: 376 cgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgtt 435
|||||| ||||||| ||||| |||||| | ||| ||| || || |||||||
Sbjct: 1315 gaagttcatgccggagaggttcgaggacggcgggtgcgacggcaatctcttgatgccgtt 1374
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| |||| ||||||||||| |||||||| || ||||| || | || | ||
Sbjct: 1375 cgggatggggaggcggaggtgccccggcgagacgctggcgctgcgcacagtggggttggt 1434
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||| | |||||| |||||||||||| ||||||| || |||| |||| ||| |||||||
Sbjct: 1435 gctgggcacgctgatccagtgcttcgactgggagagggtcgacggcgtggaggtcgacat 1494
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
||| || | |||||||||||||| ||| || ||| ||||||||||||| |||| |||
Sbjct: 1495 gactgaaggtggcgggctcaccatccccaaggtcgtgccgttggaggccatgtgcaggcc 1554
Query: 616 tcgcgaagccatgcgtcatgttcttc 641
||||| |||||| || ||||||||
Sbjct: 1555 gcgcgacgccatgggtggtgttcttc 1580
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 79 agaatgggccatgtcgctgctgctgaaccaccc 111
||||||||| |||||||| ||||||||||||||
Sbjct: 1018 agaatgggcgatgtcgctactgctgaaccaccc 1050
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
sequence
Length = 128017
Score = 147 bits (74), Expect = 1e-032
Identities = 354/446 (79%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 196 ggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctg 255
|||||||| |||||| || ||| |||||||| ||||||||||| | || ||| ||||
Sbjct: 62034 ggctacctccagtgcatcgtcagggagacgctccgcctgtaccccgccgcgccgatgctc 62093
Query: 256 ctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacg 315
|| ||||||||||| | || ||||||| ||||||||||||| | | || ||||| ||
Sbjct: 62094 ctcccgcacgagtcctccgccgactgcaaggtcggcggctacaacatcccgcgcgggtcg 62153
Query: 316 ctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccgga 375
|| || || ||| ||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 62154 atgttgctcatca-acgcgtacgccatccaccgtgacccggcggtgtgggaggagccgga 62212
Query: 376 cgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgtt 435
|||||| ||||||| ||||| |||||| | ||| ||| || || |||||||
Sbjct: 62213 gaagttcatgccggagaggttcgaggacggcgggtgcgacggcaatctcttgatgccgtt 62272
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| |||| ||||||||||| |||||||| || ||||| || | || | ||
Sbjct: 62273 cgggatggggaggcggaggtgccccggcgagacgctggcgctgcgcacagtggggttggt 62332
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||| | |||||| |||||||||||| ||||||| || |||| |||| ||| |||||||
Sbjct: 62333 gctgggcacgctgatccagtgcttcgactgggagagggtcgacggcgtggaggtcgacat 62392
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
||| || | |||||||||||||| ||| || ||| ||||||||||||| |||| |||
Sbjct: 62393 gactgaaggtggcgggctcaccatccccaaggtcgtgccgttggaggccatgtgcaggcc 62452
Query: 616 tcgcgaagccatgcgtcatgttcttc 641
||||| |||||| || ||||||||
Sbjct: 62453 gcgcgacgccatgggtggtgttcttc 62478
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Plus
Query: 429 tgccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccg 488
|||||||||||||||| |||| ||||||||||| |||||||| ||||||| || | |
Sbjct: 55681 tgccgttcgggatggggaggcggaggtgccccggcgagacgctggctctgcacacggtgg 55740
Query: 489 gcctcgtgctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgaga 548
| || ||||| | |||||| |||||||||||| ||||||| || ||||||||| |||
Sbjct: 55741 ggctggtgctgggcacgctgatccagtgcttcgactgggagagggtcgatggcgtggagg 55800
Query: 549 tcgacatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacct 608
|||||||| | ||| | |||||||||||||||||| || ||| |||||||||||| |
Sbjct: 55801 tcgacatggctgagggtggcgggctcaccatgcccaaggtcgtgccgttggaggccgtgt 55860
Query: 609 gcaagcctcgcgaagccatgcgtcatgttcttc 641
||| ||| ||||| |||||| || ||||||||
Sbjct: 55861 gcaggccgcgcgacgccatgggtggtgttcttc 55893
Score = 105 bits (53), Expect = 4e-020
Identities = 258/324 (79%), Gaps = 2/324 (0%)
Strand = Plus / Plus
Query: 53 ggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccacccg 112
||||| ||||| || ||| | |||||||||||||| ||||||||| |||||||||||||
Sbjct: 55305 ggaacagagacaacctcgacgacgatagaatgggcaatgtcgctgttgctgaaccaccca 55364
Query: 113 gaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggcng-tcccgcctcatc 171
|| |||| ||||| || | || |||||||| ||| |||| ||| |||||||| |||
Sbjct: 55365 gaaacgctcaagaaagcacaagccgagatcgacgcgtccgtcggcaactcccgcctgatc 55424
Query: 172 accatggacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctgcgc 231
||| ||||||||||| | | ||| || |||||| || ||| |||||||| |||
Sbjct: 55425 accgccgacgacgtgccccgcatcacctatctccagtgcatcgtcagggagacgctccgc 55484
Query: 232 ctgtacccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtcggc 291
|| ||||| | ||| ||| |||| | ||||||||||| | || |||||| |||||||
Sbjct: 55485 ctctaccccgcggcgccgatgctcatcccgcacgagtcctccgccgactgcgaggtcggc 55544
Query: 292 ggctacgaagtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacaggga 351
|||||| || || ||||| ||| ||||| |||| | ||||||||||||||||| | ||
Sbjct: 55545 ggctacagcgtcccgcgcgggacgatgctgctcgtga-acgcgtacgccatccaccgtga 55603
Query: 352 cccggcggcgtgggaggagccgga 375
||||||||||||||||||||||||
Sbjct: 55604 cccggcggcgtgggaggagccgga 55627
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 193 ctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtaccc 239
|||||||| || |||||| |||||||||||||||| ||| |||||||
Sbjct: 71554 ctgggctatctccagtgcatcatcaacgagacgcttcgcatgtaccc 71600
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 79 agaatgggccatgtcgctgctgctgaaccaccc 111
||||||||| |||||||| ||||||||||||||
Sbjct: 61916 agaatgggcgatgtcgctactgctgaaccaccc 61948
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 509 atccagtgcttccactgggacagaatcgatggcgc 543
|||||||||||| | ||||||||| ||||||||||
Sbjct: 67646 atccagtgcttcgattgggacagagtcgatggcgc 67680
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 77 atagaatgggccatgtcgctgctgctgaa 105
||||||||||| |||||||| ||||||||
Sbjct: 67214 atagaatgggcaatgtcgcttctgctgaa 67242
>gb|AACV01007961.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007961, whole
genome shotgun sequence
Length = 50131
Score = 147 bits (74), Expect = 1e-032
Identities = 354/446 (79%), Gaps = 1/446 (0%)
Strand = Plus / Minus
Query: 196 ggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctg 255
|||||||| |||||| || ||| |||||||| ||||||||||| | || ||| ||||
Sbjct: 15271 ggctacctccagtgcatcgtcagggagacgctccgcctgtaccccgccgcgccgatgctc 15212
Query: 256 ctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacg 315
|| ||||||||||| | || ||||||| ||||||||||||| | | || ||||| ||
Sbjct: 15211 ctcccgcacgagtcctccgccgactgcaaggtcggcggctacaacatcccgcgcgggtcg 15152
Query: 316 ctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccgga 375
|| || || ||| ||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 15151 atgttgctcatca-acgcgtacgccatccaccgtgacccggcggtgtgggaggagccgga 15093
Query: 376 cgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgtt 435
|||||| ||||||| ||||| |||||| | ||| ||| || || |||||||
Sbjct: 15092 gaagttcatgccggagaggttcgaggacggcgggtgcgacggcaatctcttgatgccgtt 15033
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| |||| ||||||||||| |||||||| || ||||| || | || | ||
Sbjct: 15032 cgggatggggaggcggaggtgccccggcgagacgctggcgctgcgcacagtggggttggt 14973
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||| | |||||| |||||||||||| ||||||| || |||| |||| ||| |||||||
Sbjct: 14972 gctgggcacgctgatccagtgcttcgactgggagagggtcgacggcgtggaggtcgacat 14913
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
||| || | |||||||||||||| ||| || ||| ||||||||||||| |||| |||
Sbjct: 14912 gactgaaggtggcgggctcaccatccccaaggtcgtgccgttggaggccatgtgcaggcc 14853
Query: 616 tcgcgaagccatgcgtcatgttcttc 641
||||| |||||| || ||||||||
Sbjct: 14852 gcgcgacgccatgggtggtgttcttc 14827
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Minus
Query: 429 tgccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccg 488
|||||||||||||||| |||| ||||||||||| |||||||| ||||||| || | |
Sbjct: 21623 tgccgttcgggatggggaggcggaggtgccccggcgagacgctggctctgcacacggtgg 21564
Query: 489 gcctcgtgctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgaga 548
| || ||||| | |||||| |||||||||||| ||||||| || ||||||||| |||
Sbjct: 21563 ggctggtgctgggcacgctgatccagtgcttcgactgggagagggtcgatggcgtggagg 21504
Query: 549 tcgacatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacct 608
|||||||| | ||| | |||||||||||||||||| || ||| |||||||||||| |
Sbjct: 21503 tcgacatggctgagggtggcgggctcaccatgcccaaggtcgtgccgttggaggccgtgt 21444
Query: 609 gcaagcctcgcgaagccatgcgtcatgttcttc 641
||| ||| ||||| |||||| || ||||||||
Sbjct: 21443 gcaggccgcgcgacgccatgggtggtgttcttc 21411
Score = 105 bits (53), Expect = 4e-020
Identities = 258/324 (79%), Gaps = 2/324 (0%)
Strand = Plus / Minus
Query: 53 ggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccacccg 112
||||| ||||| || ||| | |||||||||||||| ||||||||| |||||||||||||
Sbjct: 21999 ggaacagagacaacctcgacgacgatagaatgggcaatgtcgctgttgctgaaccaccca 21940
Query: 113 gaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggcng-tcccgcctcatc 171
|| |||| ||||| || | || |||||||| ||| |||| ||| |||||||| |||
Sbjct: 21939 gaaacgctcaagaaagcacaagccgagatcgacgcgtccgtcggcaactcccgcctgatc 21880
Query: 172 accatggacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctgcgc 231
||| ||||||||||| | | ||| || |||||| || ||| |||||||| |||
Sbjct: 21879 accgccgacgacgtgccccgcatcacctatctccagtgcatcgtcagggagacgctccgc 21820
Query: 232 ctgtacccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtcggc 291
|| ||||| | ||| ||| |||| | ||||||||||| | || |||||| |||||||
Sbjct: 21819 ctctaccccgcggcgccgatgctcatcccgcacgagtcctccgccgactgcgaggtcggc 21760
Query: 292 ggctacgaagtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacaggga 351
|||||| || || ||||| ||| ||||| |||| | ||||||||||||||||| | ||
Sbjct: 21759 ggctacagcgtcccgcgcgggacgatgctgctcgtga-acgcgtacgccatccaccgtga 21701
Query: 352 cccggcggcgtgggaggagccgga 375
||||||||||||||||||||||||
Sbjct: 21700 cccggcggcgtgggaggagccgga 21677
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 193 ctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtaccc 239
|||||||| || |||||| |||||||||||||||| ||| |||||||
Sbjct: 5751 ctgggctatctccagtgcatcatcaacgagacgcttcgcatgtaccc 5705
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 79 agaatgggccatgtcgctgctgctgaaccaccc 111
||||||||| |||||||| ||||||||||||||
Sbjct: 15389 agaatgggcgatgtcgctactgctgaaccaccc 15357
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 509 atccagtgcttccactgggacagaatcgatggcgc 543
|||||||||||| | ||||||||| ||||||||||
Sbjct: 9659 atccagtgcttcgattgggacagagtcgatggcgc 9625
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 77 atagaatgggccatgtcgctgctgctgaa 105
||||||||||| |||||||| ||||||||
Sbjct: 10091 atagaatgggcaatgtcgcttctgctgaa 10063
>ref|XM_469850.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2199
Score = 147 bits (74), Expect = 1e-032
Identities = 354/446 (79%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 196 ggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctg 255
|||||||| |||||| || ||| |||||||| ||||||||||| | || ||| ||||
Sbjct: 1741 ggctacctccagtgcatcgtcagggagacgctccgcctgtaccccgccgcgccgatgctc 1800
Query: 256 ctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacg 315
|| ||||||||||| | || ||||||| ||||||||||||| | | || ||||| ||
Sbjct: 1801 ctcccgcacgagtcctccgccgactgcaaggtcggcggctacaacatcccgcgcgggtcg 1860
Query: 316 ctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccgga 375
|| || || ||| ||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 1861 atgttgctcatca-acgcgtacgccatccaccgtgacccggcggtgtgggaggagccgga 1919
Query: 376 cgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgtt 435
|||||| ||||||| ||||| |||||| | ||| ||| || || |||||||
Sbjct: 1920 gaagttcatgccggagaggttcgaggacggcgggtgcgacggcaatctcttgatgccgtt 1979
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| |||| ||||||||||| |||||||| || ||||| || | || | ||
Sbjct: 1980 cgggatggggaggcggaggtgccccggcgagacgctggcgctgcgcacagtggggttggt 2039
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||| | |||||| |||||||||||| ||||||| || |||| |||| ||| |||||||
Sbjct: 2040 gctgggcacgctgatccagtgcttcgactgggagagggtcgacggcgtggaggtcgacat 2099
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
||| || | |||||||||||||| ||| || ||| ||||||||||||| |||| |||
Sbjct: 2100 gactgaaggtggcgggctcaccatccccaaggtcgtgccgttggaggccatgtgcaggcc 2159
Query: 616 tcgcgaagccatgcgtcatgttcttc 641
||||| |||||| || ||||||||
Sbjct: 2160 gcgcgacgccatgggtggtgttcttc 2185
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 79 agaatgggccatgtcgctgctgctgaaccaccc 111
||||||||| |||||||| ||||||||||||||
Sbjct: 1623 agaatgggcgatgtcgctactgctgaaccaccc 1655
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 147 bits (74), Expect = 1e-032
Identities = 354/446 (79%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 196 ggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctg 255
|||||||| |||||| || ||| |||||||| ||||||||||| | || ||| ||||
Sbjct: 320800 ggctacctccagtgcatcgtcagggagacgctccgcctgtaccccgccgcgccgatgctc 320859
Query: 256 ctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacg 315
|| ||||||||||| | || ||||||| ||||||||||||| | | || ||||| ||
Sbjct: 320860 ctcccgcacgagtcctccgccgactgcaaggtcggcggctacaacatcccgcgcgggtcg 320919
Query: 316 ctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccgga 375
|| || || ||| ||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 320920 atgttgctcatca-acgcgtacgccatccaccgtgacccggcggtgtgggaggagccgga 320978
Query: 376 cgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgtt 435
|||||| ||||||| ||||| |||||| | ||| ||| || || |||||||
Sbjct: 320979 gaagttcatgccggagaggttcgaggacggcgggtgcgacggcaatctcttgatgccgtt 321038
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| |||| ||||||||||| |||||||| || ||||| || | || | ||
Sbjct: 321039 cgggatggggaggcggaggtgccccggcgagacgctggcgctgcgcacagtggggttggt 321098
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||| | |||||| |||||||||||| ||||||| || |||| |||| ||| |||||||
Sbjct: 321099 gctgggcacgctgatccagtgcttcgactgggagagggtcgacggcgtggaggtcgacat 321158
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
||| || | |||||||||||||| ||| || ||| ||||||||||||| |||| |||
Sbjct: 321159 gactgaaggtggcgggctcaccatccccaaggtcgtgccgttggaggccatgtgcaggcc 321218
Query: 616 tcgcgaagccatgcgtcatgttcttc 641
||||| |||||| || ||||||||
Sbjct: 321219 gcgcgacgccatgggtggtgttcttc 321244
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Plus
Query: 429 tgccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccg 488
|||||||||||||||| |||| ||||||||||| |||||||| ||||||| || | |
Sbjct: 314447 tgccgttcgggatggggaggcggaggtgccccggcgagacgctggctctgcacacggtgg 314506
Query: 489 gcctcgtgctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgaga 548
| || ||||| | |||||| |||||||||||| ||||||| || ||||||||| |||
Sbjct: 314507 ggctggtgctgggcacgctgatccagtgcttcgactgggagagggtcgatggcgtggagg 314566
Query: 549 tcgacatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacct 608
|||||||| | ||| | |||||||||||||||||| || ||| |||||||||||| |
Sbjct: 314567 tcgacatggctgagggtggcgggctcaccatgcccaaggtcgtgccgttggaggccgtgt 314626
Query: 609 gcaagcctcgcgaagccatgcgtcatgttcttc 641
||| ||| ||||| |||||| || ||||||||
Sbjct: 314627 gcaggccgcgcgacgccatgggtggtgttcttc 314659
Score = 105 bits (53), Expect = 4e-020
Identities = 258/324 (79%), Gaps = 2/324 (0%)
Strand = Plus / Plus
Query: 53 ggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccacccg 112
||||| ||||| || ||| | |||||||||||||| ||||||||| |||||||||||||
Sbjct: 314071 ggaacagagacaacctcgacgacgatagaatgggcaatgtcgctgttgctgaaccaccca 314130
Query: 113 gaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggcng-tcccgcctcatc 171
|| |||| ||||| || | || |||||||| ||| |||| ||| |||||||| |||
Sbjct: 314131 gaaacgctcaagaaagcacaagccgagatcgacgcgtccgtcggcaactcccgcctgatc 314190
Query: 172 accatggacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctgcgc 231
||| ||||||||||| | | ||| || |||||| || ||| |||||||| |||
Sbjct: 314191 accgccgacgacgtgccccgcatcacctatctccagtgcatcgtcagggagacgctccgc 314250
Query: 232 ctgtacccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtcggc 291
|| ||||| | ||| ||| |||| | ||||||||||| | || |||||| |||||||
Sbjct: 314251 ctctaccccgcggcgccgatgctcatcccgcacgagtcctccgccgactgcgaggtcggc 314310
Query: 292 ggctacgaagtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacaggga 351
|||||| || || ||||| ||| ||||| |||| | ||||||||||||||||| | ||
Sbjct: 314311 ggctacagcgtcccgcgcgggacgatgctgctcgtga-acgcgtacgccatccaccgtga 314369
Query: 352 cccggcggcgtgggaggagccgga 375
||||||||||||||||||||||||
Sbjct: 314370 cccggcggcgtgggaggagccgga 314393
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 193 ctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtaccc 239
|||||||| || |||||| |||||||||||||||| ||| |||||||
Sbjct: 330320 ctgggctatctccagtgcatcatcaacgagacgcttcgcatgtaccc 330366
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 79 agaatgggccatgtcgctgctgctgaaccaccc 111
||||||||| |||||||| ||||||||||||||
Sbjct: 320682 agaatgggcgatgtcgctactgctgaaccaccc 320714
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 509 atccagtgcttccactgggacagaatcgatggcgc 543
|||||||||||| | ||||||||| ||||||||||
Sbjct: 326412 atccagtgcttcgattgggacagagtcgatggcgc 326446
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 77 atagaatgggccatgtcgctgctgctgaa 105
||||||||||| |||||||| ||||||||
Sbjct: 325980 atagaatgggcaatgtcgcttctgctgaa 326008
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 147 bits (74), Expect = 1e-032
Identities = 354/446 (79%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 196 ggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctg 255
|||||||| |||||| || ||| |||||||| ||||||||||| | || ||| ||||
Sbjct: 4785416 ggctacctccagtgcatcgtcagggagacgctccgcctgtaccccgccgcgccgatgctc 4785475
Query: 256 ctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacg 315
|| ||||||||||| | || ||||||| ||||||||||||| | | || ||||| ||
Sbjct: 4785476 ctcccgcacgagtcctccgccgactgcaaggtcggcggctacaacatcccgcgcgggtcg 4785535
Query: 316 ctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccgga 375
|| || || ||| ||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 4785536 atgttgctcatca-acgcgtacgccatccaccgtgacccggcggtgtgggaggagccgga 4785594
Query: 376 cgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgtt 435
|||||| ||||||| ||||| |||||| | ||| ||| || || |||||||
Sbjct: 4785595 gaagttcatgccggagaggttcgaggacggcgggtgcgacggcaatctcttgatgccgtt 4785654
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| |||| ||||||||||| |||||||| || ||||| || | || | ||
Sbjct: 4785655 cgggatggggaggcggaggtgccccggcgagacgctggcgctgcgcacagtggggttggt 4785714
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||| | |||||| |||||||||||| ||||||| || |||| |||| ||| |||||||
Sbjct: 4785715 gctgggcacgctgatccagtgcttcgactgggagagggtcgacggcgtggaggtcgacat 4785774
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
||| || | |||||||||||||| ||| || ||| ||||||||||||| |||| |||
Sbjct: 4785775 gactgaaggtggcgggctcaccatccccaaggtcgtgccgttggaggccatgtgcaggcc 4785834
Query: 616 tcgcgaagccatgcgtcatgttcttc 641
||||| |||||| || ||||||||
Sbjct: 4785835 gcgcgacgccatgggtggtgttcttc 4785860
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Plus
Query: 429 tgccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccg 488
|||||||||||||||| |||| ||||||||||| |||||||| ||||||| || | |
Sbjct: 4779064 tgccgttcgggatggggaggcggaggtgccccggcgagacgctggctctgcacacggtgg 4779123
Query: 489 gcctcgtgctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgaga 548
| || ||||| | |||||| |||||||||||| ||||||| || ||||||||| |||
Sbjct: 4779124 ggctggtgctgggcacgctgatccagtgcttcgactgggagagggtcgatggcgtggagg 4779183
Query: 549 tcgacatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacct 608
|||||||| | ||| | |||||||||||||||||| || ||| |||||||||||| |
Sbjct: 4779184 tcgacatggctgagggtggcgggctcaccatgcccaaggtcgtgccgttggaggccgtgt 4779243
Query: 609 gcaagcctcgcgaagccatgcgtcatgttcttc 641
||| ||| ||||| |||||| || ||||||||
Sbjct: 4779244 gcaggccgcgcgacgccatgggtggtgttcttc 4779276
Score = 105 bits (53), Expect = 4e-020
Identities = 258/324 (79%), Gaps = 2/324 (0%)
Strand = Plus / Plus
Query: 53 ggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccacccg 112
||||| ||||| || ||| | |||||||||||||| ||||||||| |||||||||||||
Sbjct: 4778688 ggaacagagacaacctcgacgacgatagaatgggcaatgtcgctgttgctgaaccaccca 4778747
Query: 113 gaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggcng-tcccgcctcatc 171
|| |||| ||||| || | || |||||||| ||| |||| ||| |||||||| |||
Sbjct: 4778748 gaaacgctcaagaaagcacaagccgagatcgacgcgtccgtcggcaactcccgcctgatc 4778807
Query: 172 accatggacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctgcgc 231
||| ||||||||||| | | ||| || |||||| || ||| |||||||| |||
Sbjct: 4778808 accgccgacgacgtgccccgcatcacctatctccagtgcatcgtcagggagacgctccgc 4778867
Query: 232 ctgtacccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtcggc 291
|| ||||| | ||| ||| |||| | ||||||||||| | || |||||| |||||||
Sbjct: 4778868 ctctaccccgcggcgccgatgctcatcccgcacgagtcctccgccgactgcgaggtcggc 4778927
Query: 292 ggctacgaagtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacaggga 351
|||||| || || ||||| ||| ||||| |||| | ||||||||||||||||| | ||
Sbjct: 4778928 ggctacagcgtcccgcgcgggacgatgctgctcgtga-acgcgtacgccatccaccgtga 4778986
Query: 352 cccggcggcgtgggaggagccgga 375
||||||||||||||||||||||||
Sbjct: 4778987 cccggcggcgtgggaggagccgga 4779010
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 193 ctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtaccc 239
|||||||| || |||||| |||||||||||||||| ||| |||||||
Sbjct: 4794936 ctgggctatctccagtgcatcatcaacgagacgcttcgcatgtaccc 4794982
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 79 agaatgggccatgtcgctgctgctgaaccaccc 111
||||||||| |||||||| ||||||||||||||
Sbjct: 4785298 agaatgggcgatgtcgctactgctgaaccaccc 4785330
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 509 atccagtgcttccactgggacagaatcgatggcgc 543
|||||||||||| | ||||||||| ||||||||||
Sbjct: 4791028 atccagtgcttcgattgggacagagtcgatggcgc 4791062
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 77 atagaatgggccatgtcgctgctgctgaa 105
||||||||||| |||||||| ||||||||
Sbjct: 4790596 atagaatgggcaatgtcgcttctgctgaa 4790624
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 147 bits (74), Expect = 1e-032
Identities = 354/446 (79%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 196 ggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctg 255
|||||||| |||||| || ||| |||||||| ||||||||||| | || ||| ||||
Sbjct: 32051579 ggctacctccagtgcatcgtcagggagacgctccgcctgtaccccgccgcgccgatgctc 32051638
Query: 256 ctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacg 315
|| ||||||||||| | || ||||||| ||||||||||||| | | || ||||| ||
Sbjct: 32051639 ctcccgcacgagtcctccgccgactgcaaggtcggcggctacaacatcccgcgcgggtcg 32051698
Query: 316 ctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccgga 375
|| || || ||| ||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 32051699 atgttgctcatca-acgcgtacgccatccaccgtgacccggcggtgtgggaggagccgga 32051757
Query: 376 cgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgtt 435
|||||| ||||||| ||||| |||||| | ||| ||| || || |||||||
Sbjct: 32051758 gaagttcatgccggagaggttcgaggacggcgggtgcgacggcaatctcttgatgccgtt 32051817
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| |||| ||||||||||| |||||||| || ||||| || | || | ||
Sbjct: 32051818 cgggatggggaggcggaggtgccccggcgagacgctggcgctgcgcacagtggggttggt 32051877
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||| | |||||| |||||||||||| ||||||| || |||| |||| ||| |||||||
Sbjct: 32051878 gctgggcacgctgatccagtgcttcgactgggagagggtcgacggcgtggaggtcgacat 32051937
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
||| || | |||||||||||||| ||| || ||| ||||||||||||| |||| |||
Sbjct: 32051938 gactgaaggtggcgggctcaccatccccaaggtcgtgccgttggaggccatgtgcaggcc 32051997
Query: 616 tcgcgaagccatgcgtcatgttcttc 641
||||| |||||| || ||||||||
Sbjct: 32051998 gcgcgacgccatgggtggtgttcttc 32052023
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Plus
Query: 429 tgccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccg 488
|||||||||||||||| |||| ||||||||||| |||||||| ||||||| || | |
Sbjct: 32045227 tgccgttcgggatggggaggcggaggtgccccggcgagacgctggctctgcacacggtgg 32045286
Query: 489 gcctcgtgctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgaga 548
| || ||||| | |||||| |||||||||||| ||||||| || ||||||||| |||
Sbjct: 32045287 ggctggtgctgggcacgctgatccagtgcttcgactgggagagggtcgatggcgtggagg 32045346
Query: 549 tcgacatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacct 608
|||||||| | ||| | |||||||||||||||||| || ||| |||||||||||| |
Sbjct: 32045347 tcgacatggctgagggtggcgggctcaccatgcccaaggtcgtgccgttggaggccgtgt 32045406
Query: 609 gcaagcctcgcgaagccatgcgtcatgttcttc 641
||| ||| ||||| |||||| || ||||||||
Sbjct: 32045407 gcaggccgcgcgacgccatgggtggtgttcttc 32045439
Score = 105 bits (53), Expect = 4e-020
Identities = 258/324 (79%), Gaps = 2/324 (0%)
Strand = Plus / Plus
Query: 53 ggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccacccg 112
||||| ||||| || ||| | |||||||||||||| ||||||||| |||||||||||||
Sbjct: 32044851 ggaacagagacaacctcgacgacgatagaatgggcaatgtcgctgttgctgaaccaccca 32044910
Query: 113 gaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggcng-tcccgcctcatc 171
|| |||| ||||| || | || |||||||| ||| |||| ||| |||||||| |||
Sbjct: 32044911 gaaacgctcaagaaagcacaagccgagatcgacgcgtccgtcggcaactcccgcctgatc 32044970
Query: 172 accatggacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctgcgc 231
||| ||||||||||| | | ||| || |||||| || ||| |||||||| |||
Sbjct: 32044971 accgccgacgacgtgccccgcatcacctatctccagtgcatcgtcagggagacgctccgc 32045030
Query: 232 ctgtacccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtcggc 291
|| ||||| | ||| ||| |||| | ||||||||||| | || |||||| |||||||
Sbjct: 32045031 ctctaccccgcggcgccgatgctcatcccgcacgagtcctccgccgactgcgaggtcggc 32045090
Query: 292 ggctacgaagtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacaggga 351
|||||| || || ||||| ||| ||||| |||| | ||||||||||||||||| | ||
Sbjct: 32045091 ggctacagcgtcccgcgcgggacgatgctgctcgtga-acgcgtacgccatccaccgtga 32045149
Query: 352 cccggcggcgtgggaggagccgga 375
||||||||||||||||||||||||
Sbjct: 32045150 cccggcggcgtgggaggagccgga 32045173
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct: 14899535 gacccgtcggcgtgggaggacccgctggagttcaggccggagcggttc 14899582
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 193 ctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtaccc 239
|||||||| || |||||| |||||||||||||||| ||| |||||||
Sbjct: 32061099 ctgggctatctccagtgcatcatcaacgagacgcttcgcatgtaccc 32061145
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 79 agaatgggccatgtcgctgctgctgaaccaccc 111
||||||||| |||||||| ||||||||||||||
Sbjct: 32051461 agaatgggcgatgtcgctactgctgaaccaccc 32051493
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 509 atccagtgcttccactgggacagaatcgatggcgc 543
|||||||||||| | ||||||||| ||||||||||
Sbjct: 32057191 atccagtgcttcgattgggacagagtcgatggcgc 32057225
Score = 46.1 bits (23), Expect = 0.030
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 367 ggagccggacgagttcaggccggagcggttc 397
|||||| ||||||||| ||||||||||||||
Sbjct: 17886887 ggagcccgacgagttccggccggagcggttc 17886857
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 77 atagaatgggccatgtcgctgctgctgaa 105
||||||||||| |||||||| ||||||||
Sbjct: 32056759 atagaatgggcaatgtcgcttctgctgaa 32056787
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 147 bits (74), Expect = 1e-032
Identities = 354/446 (79%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 196 ggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctg 255
|||||||| |||||| || ||| |||||||| ||||||||||| | || ||| ||||
Sbjct: 31231916 ggctacctccagtgcatcgtcagggagacgctccgcctgtaccccgccgcgccgatgctc 31231975
Query: 256 ctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacg 315
|| ||||||||||| | || ||||||| ||||||||||||| | | || ||||| ||
Sbjct: 31231976 ctcccgcacgagtcctccgccgactgcaaggtcggcggctacaacatcccgcgcgggtcg 31232035
Query: 316 ctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccgga 375
|| || || ||| ||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 31232036 atgttgctcatca-acgcgtacgccatccaccgtgacccggcggtgtgggaggagccgga 31232094
Query: 376 cgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgtt 435
|||||| ||||||| ||||| |||||| | ||| ||| || || |||||||
Sbjct: 31232095 gaagttcatgccggagaggttcgaggacggcgggtgcgacggcaatctcttgatgccgtt 31232154
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| |||| ||||||||||| |||||||| || ||||| || | || | ||
Sbjct: 31232155 cgggatggggaggcggaggtgccccggcgagacgctggcgctgcgcacagtggggttggt 31232214
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||| | |||||| |||||||||||| ||||||| || |||| |||| ||| |||||||
Sbjct: 31232215 gctgggcacgctgatccagtgcttcgactgggagagggtcgacggcgtggaggtcgacat 31232274
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
||| || | |||||||||||||| ||| || ||| ||||||||||||| |||| |||
Sbjct: 31232275 gactgaaggtggcgggctcaccatccccaaggtcgtgccgttggaggccatgtgcaggcc 31232334
Query: 616 tcgcgaagccatgcgtcatgttcttc 641
||||| |||||| || ||||||||
Sbjct: 31232335 gcgcgacgccatgggtggtgttcttc 31232360
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Plus
Query: 429 tgccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccg 488
|||||||||||||||| |||| ||||||||||| |||||||| ||||||| || | |
Sbjct: 31225563 tgccgttcgggatggggaggcggaggtgccccggcgagacgctggctctgcacacggtgg 31225622
Query: 489 gcctcgtgctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgaga 548
| || ||||| | |||||| |||||||||||| ||||||| || ||||||||| |||
Sbjct: 31225623 ggctggtgctgggcacgctgatccagtgcttcgactgggagagggtcgatggcgtggagg 31225682
Query: 549 tcgacatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacct 608
|||||||| | ||| | |||||||||||||||||| || ||| |||||||||||| |
Sbjct: 31225683 tcgacatggctgagggtggcgggctcaccatgcccaaggtcgtgccgttggaggccgtgt 31225742
Query: 609 gcaagcctcgcgaagccatgcgtcatgttcttc 641
||| ||| ||||| |||||| || ||||||||
Sbjct: 31225743 gcaggccgcgcgacgccatgggtggtgttcttc 31225775
Score = 105 bits (53), Expect = 4e-020
Identities = 258/324 (79%), Gaps = 2/324 (0%)
Strand = Plus / Plus
Query: 53 ggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccacccg 112
||||| ||||| || ||| | |||||||||||||| ||||||||| |||||||||||||
Sbjct: 31225187 ggaacagagacaacctcgacgacgatagaatgggcaatgtcgctgttgctgaaccaccca 31225246
Query: 113 gaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggcng-tcccgcctcatc 171
|| |||| ||||| || | || |||||||| ||| |||| ||| |||||||| |||
Sbjct: 31225247 gaaacgctcaagaaagcacaagccgagatcgacgcgtccgtcggcaactcccgcctgatc 31225306
Query: 172 accatggacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctgcgc 231
||| ||||||||||| | | ||| || |||||| || ||| |||||||| |||
Sbjct: 31225307 accgccgacgacgtgccccgcatcacctatctccagtgcatcgtcagggagacgctccgc 31225366
Query: 232 ctgtacccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtcggc 291
|| ||||| | ||| ||| |||| | ||||||||||| | || |||||| |||||||
Sbjct: 31225367 ctctaccccgcggcgccgatgctcatcccgcacgagtcctccgccgactgcgaggtcggc 31225426
Query: 292 ggctacgaagtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacaggga 351
|||||| || || ||||| ||| ||||| |||| | ||||||||||||||||| | ||
Sbjct: 31225427 ggctacagcgtcccgcgcgggacgatgctgctcgtga-acgcgtacgccatccaccgtga 31225485
Query: 352 cccggcggcgtgggaggagccgga 375
||||||||||||||||||||||||
Sbjct: 31225486 cccggcggcgtgggaggagccgga 31225509
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct: 14220269 gacccgtcggcgtgggaggacccgctggagttcaggccggagcggttc 14220316
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 193 ctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtaccc 239
|||||||| || |||||| |||||||||||||||| ||| |||||||
Sbjct: 31241436 ctgggctatctccagtgcatcatcaacgagacgcttcgcatgtaccc 31241482
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 79 agaatgggccatgtcgctgctgctgaaccaccc 111
||||||||| |||||||| ||||||||||||||
Sbjct: 31231798 agaatgggcgatgtcgctactgctgaaccaccc 31231830
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 509 atccagtgcttccactgggacagaatcgatggcgc 543
|||||||||||| | ||||||||| ||||||||||
Sbjct: 31237528 atccagtgcttcgattgggacagagtcgatggcgc 31237562
Score = 46.1 bits (23), Expect = 0.030
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 367 ggagccggacgagttcaggccggagcggttc 397
|||||| ||||||||| ||||||||||||||
Sbjct: 17146689 ggagcccgacgagttccggccggagcggttc 17146659
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 77 atagaatgggccatgtcgctgctgctgaa 105
||||||||||| |||||||| ||||||||
Sbjct: 31237096 atagaatgggcaatgtcgcttctgctgaa 31237124
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 147 bits (74), Expect = 1e-032
Identities = 354/446 (79%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 196 ggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctg 255
|||||||| |||||| || ||| |||||||| ||||||||||| | || ||| ||||
Sbjct: 31141393 ggctacctccagtgcatcgtcagggagacgctccgcctgtaccccgccgcgccgatgctc 31141452
Query: 256 ctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacg 315
|| ||||||||||| | || ||||||| ||||||||||||| | | || ||||| ||
Sbjct: 31141453 ctcccgcacgagtcctccgccgactgcaaggtcggcggctacaacatcccgcgcgggtcg 31141512
Query: 316 ctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccgga 375
|| || || ||| ||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 31141513 atgttgctcatca-acgcgtacgccatccaccgtgacccggcggtgtgggaggagccgga 31141571
Query: 376 cgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgtt 435
|||||| ||||||| ||||| |||||| | ||| ||| || || |||||||
Sbjct: 31141572 gaagttcatgccggagaggttcgaggacggcgggtgcgacggcaatctcttgatgccgtt 31141631
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| |||| ||||||||||| |||||||| || ||||| || | || | ||
Sbjct: 31141632 cgggatggggaggcggaggtgccccggcgagacgctggcgctgcgcacagtggggttggt 31141691
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||| | |||||| |||||||||||| ||||||| || |||| |||| ||| |||||||
Sbjct: 31141692 gctgggcacgctgatccagtgcttcgactgggagagggtcgacggcgtggaggtcgacat 31141751
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
||| || | |||||||||||||| ||| || ||| ||||||||||||| |||| |||
Sbjct: 31141752 gactgaaggtggcgggctcaccatccccaaggtcgtgccgttggaggccatgtgcaggcc 31141811
Query: 616 tcgcgaagccatgcgtcatgttcttc 641
||||| |||||| || ||||||||
Sbjct: 31141812 gcgcgacgccatgggtggtgttcttc 31141837
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Plus
Query: 429 tgccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccg 488
|||||||||||||||| |||| ||||||||||| |||||||| ||||||| || | |
Sbjct: 31135040 tgccgttcgggatggggaggcggaggtgccccggcgagacgctggctctgcacacggtgg 31135099
Query: 489 gcctcgtgctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgaga 548
| || ||||| | |||||| |||||||||||| ||||||| || ||||||||| |||
Sbjct: 31135100 ggctggtgctgggcacgctgatccagtgcttcgactgggagagggtcgatggcgtggagg 31135159
Query: 549 tcgacatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacct 608
|||||||| | ||| | |||||||||||||||||| || ||| |||||||||||| |
Sbjct: 31135160 tcgacatggctgagggtggcgggctcaccatgcccaaggtcgtgccgttggaggccgtgt 31135219
Query: 609 gcaagcctcgcgaagccatgcgtcatgttcttc 641
||| ||| ||||| |||||| || ||||||||
Sbjct: 31135220 gcaggccgcgcgacgccatgggtggtgttcttc 31135252
Score = 105 bits (53), Expect = 4e-020
Identities = 258/324 (79%), Gaps = 2/324 (0%)
Strand = Plus / Plus
Query: 53 ggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccacccg 112
||||| ||||| || ||| | |||||||||||||| ||||||||| |||||||||||||
Sbjct: 31134664 ggaacagagacaacctcgacgacgatagaatgggcaatgtcgctgttgctgaaccaccca 31134723
Query: 113 gaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggcng-tcccgcctcatc 171
|| |||| ||||| || | || |||||||| ||| |||| ||| |||||||| |||
Sbjct: 31134724 gaaacgctcaagaaagcacaagccgagatcgacgcgtccgtcggcaactcccgcctgatc 31134783
Query: 172 accatggacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctgcgc 231
||| ||||||||||| | | ||| || |||||| || ||| |||||||| |||
Sbjct: 31134784 accgccgacgacgtgccccgcatcacctatctccagtgcatcgtcagggagacgctccgc 31134843
Query: 232 ctgtacccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtcggc 291
|| ||||| | ||| ||| |||| | ||||||||||| | || |||||| |||||||
Sbjct: 31134844 ctctaccccgcggcgccgatgctcatcccgcacgagtcctccgccgactgcgaggtcggc 31134903
Query: 292 ggctacgaagtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacaggga 351
|||||| || || ||||| ||| ||||| |||| | ||||||||||||||||| | ||
Sbjct: 31134904 ggctacagcgtcccgcgcgggacgatgctgctcgtga-acgcgtacgccatccaccgtga 31134962
Query: 352 cccggcggcgtgggaggagccgga 375
||||||||||||||||||||||||
Sbjct: 31134963 cccggcggcgtgggaggagccgga 31134986
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct: 14225294 gacccgtcggcgtgggaggacccgctggagttcaggccggagcggttc 14225341
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 193 ctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtaccc 239
|||||||| || |||||| |||||||||||||||| ||| |||||||
Sbjct: 31150913 ctgggctatctccagtgcatcatcaacgagacgcttcgcatgtaccc 31150959
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 79 agaatgggccatgtcgctgctgctgaaccaccc 111
||||||||| |||||||| ||||||||||||||
Sbjct: 31141275 agaatgggcgatgtcgctactgctgaaccaccc 31141307
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 509 atccagtgcttccactgggacagaatcgatggcgc 543
|||||||||||| | ||||||||| ||||||||||
Sbjct: 31147005 atccagtgcttcgattgggacagagtcgatggcgc 31147039
Score = 46.1 bits (23), Expect = 0.030
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 367 ggagccggacgagttcaggccggagcggttc 397
|||||| ||||||||| ||||||||||||||
Sbjct: 17153120 ggagcccgacgagttccggccggagcggttc 17153090
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 77 atagaatgggccatgtcgctgctgctgaa 105
||||||||||| |||||||| ||||||||
Sbjct: 31146573 atagaatgggcaatgtcgcttctgctgaa 31146601
>ref|XM_469849.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1539
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Plus
Query: 429 tgccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccg 488
|||||||||||||||| |||| ||||||||||| |||||||| ||||||| || | |
Sbjct: 1316 tgccgttcgggatggggaggcggaggtgccccggcgagacgctggctctgcacacggtgg 1375
Query: 489 gcctcgtgctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgaga 548
| || ||||| | |||||| |||||||||||| ||||||| || ||||||||| |||
Sbjct: 1376 ggctggtgctgggcacgctgatccagtgcttcgactgggagagggtcgatggcgtggagg 1435
Query: 549 tcgacatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacct 608
|||||||| | ||| | |||||||||||||||||| || ||| |||||||||||| |
Sbjct: 1436 tcgacatggctgagggtggcgggctcaccatgcccaaggtcgtgccgttggaggccgtgt 1495
Query: 609 gcaagcctcgcgaagccatgcgtcatgttcttc 641
||| ||| ||||| |||||| || ||||||||
Sbjct: 1496 gcaggccgcgcgacgccatgggtggtgttcttc 1528
Score = 105 bits (53), Expect = 4e-020
Identities = 258/324 (79%), Gaps = 2/324 (0%)
Strand = Plus / Plus
Query: 53 ggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccacccg 112
||||| ||||| || ||| | |||||||||||||| ||||||||| |||||||||||||
Sbjct: 940 ggaacagagacaacctcgacgacgatagaatgggcaatgtcgctgttgctgaaccaccca 999
Query: 113 gaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggcng-tcccgcctcatc 171
|| |||| ||||| || | || |||||||| ||| |||| ||| |||||||| |||
Sbjct: 1000 gaaacgctcaagaaagcacaagccgagatcgacgcgtccgtcggcaactcccgcctgatc 1059
Query: 172 accatggacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctgcgc 231
||| ||||||||||| | | ||| || |||||| || ||| |||||||| |||
Sbjct: 1060 accgccgacgacgtgccccgcatcacctatctccagtgcatcgtcagggagacgctccgc 1119
Query: 232 ctgtacccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtcggc 291
|| ||||| | ||| ||| |||| | ||||||||||| | || |||||| |||||||
Sbjct: 1120 ctctaccccgcggcgccgatgctcatcccgcacgagtcctccgccgactgcgaggtcggc 1179
Query: 292 ggctacgaagtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacaggga 351
|||||| || || ||||| ||| ||||| |||| | ||||||||||||||||| | ||
Sbjct: 1180 ggctacagcgtcccgcgcgggacgatgctgctcgtga-acgcgtacgccatccaccgtga 1238
Query: 352 cccggcggcgtgggaggagccgga 375
||||||||||||||||||||||||
Sbjct: 1239 cccggcggcgtgggaggagccgga 1262
>gb|CB660342.1|CB660342 OSJNEd01P15.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd01P15 3', mRNA sequence
Length = 704
Score = 111 bits (56), Expect = 6e-022
Identities = 248/312 (79%)
Strand = Plus / Minus
Query: 330 acgcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccgg 389
||||||||||||||||| | |||||||||| ||||||||| ||||| |||||| |||||
Sbjct: 578 acgcgtacgccatccaccgtgacccggcggtgtgggaggacccggagaagttcatgccgg 519
Query: 390 agcggttccgcgacggcaaggccgagggccggctgatgctgccgttcgggatgggacggc 449
|| ||||| |||||| | ||| ||| || || |||||||||||||||| |||
Sbjct: 518 agaggttcgaggacggcgggtgcgacggcaatctcttgatgccgttcgggatggggaggc 459
Query: 450 gcaggtgccccggggagacgctcgctctgcggaccgccggcctcgtgctcgccacgctca 509
| ||||||||||| |||||||| || ||||| || | || | ||||| | |||||| |
Sbjct: 458 ggaggtgccccggcgagacgctggcgctgcgcacagtggggttggtgctgggcacgctga 399
Query: 510 tccagtgcttccactgggacagaatcgatggcgctgagatcgacatgaccgagagcggcg 569
||||||||||| ||||||| || |||| |||| ||| |||||||||| || | ||||
Sbjct: 398 tccagtgcttcgactgggagagggtcgacggcgtggaggtcgacatgactgaaggtggcg 339
Query: 570 ggctcaccatgccccgggccgtcccgttggaggccacctgcaagcctcgcgaagccatgc 629
||||| |||| ||| || ||| ||||||||||||| |||| ||| ||||| ||||||
Sbjct: 338 ggctccccatccccaaggtcgtgccgttggaggccatgtgcaggccgcgcgacgccatgg 279
Query: 630 gtcatgttcttc 641
|| ||||||||
Sbjct: 278 gtggtgttcttc 267
>gb|AQ288789.1|AQ288789 nbxb0033H21r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0033H21r, DNA sequence
Length = 644
Score = 105 bits (53), Expect = 4e-020
Identities = 173/213 (81%)
Strand = Plus / Minus
Query: 429 tgccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccg 488
|||||||||||||||| |||| ||||||||||| |||||||| ||||||| || | |
Sbjct: 296 tgccgttcgggatggggaggcggaggtgccccggcgagacgctggctctgcacacggtgg 237
Query: 489 gcctcgtgctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgaga 548
| || ||||| | |||||| |||||||||||| ||||||| || ||||||||| |||
Sbjct: 236 ggctggtgctgggcacgctgatccagtgcttcgactgggagagggtcgatggcgtggagg 177
Query: 549 tcgacatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacct 608
|||||||| | ||| | |||||||||||||||||| || ||| |||||| ||||| |
Sbjct: 176 tcgacatggctgagggtggcgggctcaccatgcccaaggtcgtgccgttgaaggccgtgt 117
Query: 609 gcaagcctcgcgaagccatgcgtcatgttcttc 641
||| ||| ||||| |||||| || ||||||||
Sbjct: 116 gcaggccgcgcgacgccatgggtggtgttcttc 84
>gb|C97610.1|C97610 C97610 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60478_7Z, mRNA sequence
Length = 719
Score = 95.6 bits (48), Expect = 4e-017
Identities = 248/313 (79%), Gaps = 2/313 (0%)
Strand = Plus / Plus
Query: 330 acgcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccgg 389
|||||||||| |||||| | |||||||||| ||||||||| ||||| |||||| |||||
Sbjct: 97 acgcgtacgcnatccaccgtgacccggcggtgtgggagganccggagaagttcatgccgg 156
Query: 390 agcggttccgcgacggcaaggccgagggccggctgatgctgccgttcgggatgggacggc 449
|| |||| |||||| | |||| ||| || || |||||||||||||||| |||
Sbjct: 157 agangttcgaggacggcgggtccgacggcaatctcttgatgccgttcgggatggggaggc 216
Query: 450 gcaggtgccccggggaga-cgctcgctctgcggaccgccggcctcgtgctcgccacgctc 508
| ||||||||||| |||| |||| || ||||| || | || | ||||| | ||||||
Sbjct: 217 ggaggtgccccggcgagaacgctggc-ctgcgcacagtggggttggtgctgggcacgctg 275
Query: 509 atccagtgcttccactgggacagaatcgatggcgctgagatcgacatgaccgagagcggc 568
|||||||||||| ||||||| || |||| |||| ||| |||||||||| || | |||
Sbjct: 276 atccagtgcttcgactgggagagggtcgacggcgtggaggtcgacatgactgaaggtggc 335
Query: 569 gggctcaccatgccccgggccgtcccgttggaggccacctgcaagcctcgcgaagccatg 628
||||||||||| ||| || ||| ||||||||||||| |||| ||| ||||| ||||||
Sbjct: 336 gggctcaccatccccaaggtcgtgccgttggaggccatgtgcaggccgcgcgacgccatg 395
Query: 629 cgtcatgttcttc 641
|| ||||||||
Sbjct: 396 ggtggtgttcttc 408
>gb|CF329812.1|CF329812 NACL--05-E11.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--05-E11, mRNA sequence
Length = 404
Score = 75.8 bits (38), Expect = 3e-011
Identities = 144/178 (80%), Gaps = 1/178 (0%)
Strand = Plus / Plus
Query: 196 ggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctg 255
|||||||| |||||| || ||| |||||||| ||||||||||| | || ||| ||||
Sbjct: 228 ggctacctccagtgcatcgtcagggagacgctccgcctgtaccccgccgcgccgatgctc 287
Query: 256 ctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacg 315
|| ||||||||||| | || ||||||| ||||||||||||| | | || ||||| ||
Sbjct: 288 ctcccgcacgagtcctccgccgactgcaaggtcggcggctacaacatcccgcgcgggtcg 347
Query: 316 ctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccg 373
|| || || ||| |||||||||||| |||| | |||||||||| |||||||||||||
Sbjct: 348 atgttgctcatca-acgcgtacgccaaccaccgtgacccggcggtgtgggaggagccg 404
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 79 agaatgggccatgtcgctgctgctgaaccaccc 111
||||||||| |||||||| ||||||||||||||
Sbjct: 110 agaatgggcgatgtcgctactgctgaaccaccc 142
>gb|AU070733.1|AU070733 AU070733 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10166_2Z, mRNA sequence
Length = 424
Score = 65.9 bits (33), Expect = 3e-008
Identities = 115/141 (81%), Gaps = 1/141 (0%)
Strand = Plus / Plus
Query: 502 cacgctcatccagtgcttcc-actgggacagaatcgatggcgctgagatcgacatgaccg 560
|||||| ||||||||||||| ||||||| || |||| |||| ||| |||||||||| |
Sbjct: 3 cacgctgatccagtgcttccgactgggagagggtcgacggcgtggaggtcgacatgactg 62
Query: 561 agagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcctcgcg 620
| | |||||||||||||| ||| || ||| ||||||||||||| |||| ||| ||||
Sbjct: 63 aaggtggcgggctcaccatccccaaggtcgtgccgttggaggccatgtgcaggccgcgcg 122
Query: 621 aagccatgcgtcatgttcttc 641
| |||||| || ||||||||
Sbjct: 123 acgccatgggtggtgttcttc 143
>gb|CB654797.1|CB654797 OSJNEc07J11.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07J11 5', mRNA sequence
Length = 733
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 458 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttc 411
>gb|CB654798.1|CB654798 OSJNEc07J11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07J11 3', mRNA sequence
Length = 752
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 477 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttc 430
>dbj|AK072861.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141H24, full
insert sequence
Length = 1693
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 1221 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttc 1268
>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0104B02
Length = 169588
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 43917 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttc 43964
>gb|AACV01018675.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018675, whole
genome shotgun sequence
Length = 33710
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 31280 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttc 31233
>ref|XM_482839.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1694
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 1222 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttc 1269
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 22631992 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttc 22632039
Score = 46.1 bits (23), Expect = 0.030
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 214 atcaacgagacgctgcgcctgtacccg 240
||||||||||||||||| |||||||||
Sbjct: 20516634 atcaacgagacgctgcggctgtacccg 20516608
Score = 44.1 bits (22), Expect = 0.12
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttca 383
|||||| ||||||||||| ||||||||||||||
Sbjct: 24911045 gacccgacggcgtgggagaggccggacgagttca 24911078
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 14119521 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttc 14119568
Score = 46.1 bits (23), Expect = 0.030
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 214 atcaacgagacgctgcgcctgtacccg 240
||||||||||||||||| |||||||||
Sbjct: 11994605 atcaacgagacgctgcggctgtacccg 11994579
Score = 44.1 bits (22), Expect = 0.12
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttca 383
|||||| ||||||||||| ||||||||||||||
Sbjct: 16408711 gacccgacggcgtgggagaggccggacgagttca 16408744
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 21721527 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttc 21721574
Score = 46.1 bits (23), Expect = 0.030
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 214 atcaacgagacgctgcgcctgtacccg 240
||||||||||||||||| |||||||||
Sbjct: 19596611 atcaacgagacgctgcggctgtacccg 19596585
Score = 44.1 bits (22), Expect = 0.12
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttca 383
|||||| ||||||||||| ||||||||||||||
Sbjct: 24010717 gacccgacggcgtgggagaggccggacgagttca 24010750
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 63.9 bits (32), Expect = 1e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 22870079 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttc 22870126
Score = 46.1 bits (23), Expect = 0.030
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 214 atcaacgagacgctgcgcctgtacccg 240
||||||||||||||||| |||||||||
Sbjct: 20754721 atcaacgagacgctgcggctgtacccg 20754695
Score = 44.1 bits (22), Expect = 0.12
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttca 383
|||||| ||||||||||| ||||||||||||||
Sbjct: 25149132 gacccgacggcgtgggagaggccggacgagttca 25149165
>gb|AU071096.1|AU071096 AU071096 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10732_2A, mRNA sequence
Length = 510
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct: 190 gacccgtcggcgtgggaggacccgctggagttcaggccggagcggttc 237
>gb|CB659650.1|CB659650 OSJNEc16M24.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16M24 3', mRNA sequence
Length = 783
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 419 gacccggcggcgtgggagaggcccgacgagttcgtgccggagcggttc 372
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 236 acccggtggccccgctgctgctgccgcac 264
||||||||| | |||||||||||||||||
Sbjct: 535 acccggtgggcgcgctgctgctgccgcac 507
>gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBb0012F18, from chromosome 3, complete sequence
Length = 122903
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct: 99585 gacccgtcggcgtgggaggacccgctggagttcaggccggagcggttc 99632
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNAb0012F18, complete sequence
Length = 122159
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct: 36682 gacccgtcggcgtgggaggacccgctggagttcaggccggagcggttc 36729
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0642B07
Length = 139297
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 84831 gacccggcggcgtgggagaggcccgacgagttcgtgccggagcggttc 84878
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 236 acccggtggccccgctgctgctgccgcac 264
||||||||| | |||||||||||||||||
Sbjct: 84715 acccggtgggcgcgctgctgctgccgcac 84743
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 715554 gacccggcggcgtgggagaggcccgacgagttcgtgccggagcggttc 715601
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 370 gccggacgagttcaggccggagcggttccgcgacggcaaggc 411
|||||| |||||| |||||||||||||| |||||||| ||||
Sbjct: 3155588 gccggaggagttccggccggagcggttcggcgacggcgaggc 3155629
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 215 tcaacgagacgctgcgcctgtacccg 240
||||||||||||||||||||||||||
Sbjct: 788196 tcaacgagacgctgcgcctgtacccg 788221
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 377 gagttcaggccggagcggttccgcgacggc 406
|||||| |||||||||||||| ||||||||
Sbjct: 3146894 gagttccggccggagcggttcggcgacggc 3146923
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 236 acccggtggccccgctgctgctgccgcac 264
||||||||| | |||||||||||||||||
Sbjct: 715438 acccggtgggcgcgctgctgctgccgcac 715466
>gb|AACV01006705.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006705, whole
genome shotgun sequence
Length = 19638
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct: 8540 gacccgtcggcgtgggaggacccgctggagttcaggccggagcggttc 8587
>gb|AACV01014488.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014488, whole
genome shotgun sequence
Length = 13897
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 12166 gacccggcggcgtgggagaggcccgacgagttcgtgccggagcggttc 12119
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 236 acccggtggccccgctgctgctgccgcac 264
||||||||| | |||||||||||||||||
Sbjct: 12282 acccggtgggcgcgctgctgctgccgcac 12254
>ref|NT_079854.2| Oryza sativa (japonica cultivar-group)
Length = 2592259
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct: 615966 gacccgtcggcgtgggaggacccgctggagttcaggccggagcggttc 616013
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 4573797 gacccggcggcgtgggagaggcccgacgagttcgtgccggagcggttc 4573844
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 370 gccggacgagttcaggccggagcggttccgcgacggcaaggc 411
|||||| |||||| |||||||||||||| |||||||| ||||
Sbjct: 7006629 gccggaggagttccggccggagcggttcggcgacggcgaggc 7006670
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 215 tcaacgagacgctgcgcctgtacccg 240
||||||||||||||||||||||||||
Sbjct: 4646661 tcaacgagacgctgcgcctgtacccg 4646686
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 377 gagttcaggccggagcggttccgcgacggc 406
|||||| |||||||||||||| ||||||||
Sbjct: 6998350 gagttccggccggagcggttcggcgacggc 6998379
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 236 acccggtggccccgctgctgctgccgcac 264
||||||||| | |||||||||||||||||
Sbjct: 4573681 acccggtgggcgcgctgctgctgccgcac 4573709
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011
genomic scaffold, whole genome shotgun sequence
Length = 12704415
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct: 848828 gacccgtcggcgtgggaggacccgctggagttcaggccggagcggttc 848875
Score = 46.1 bits (23), Expect = 0.030
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 367 ggagccggacgagttcaggccggagcggttc 397
|||||| ||||||||| ||||||||||||||
Sbjct: 3836180 ggagcccgacgagttccggccggagcggttc 3836150
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 22272534 gacccggcggcgtgggagaggcccgacgagttcgtgccggagcggttc 22272581
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 370 gccggacgagttcaggccggagcggttccgcgacggcaaggc 411
|||||| |||||| |||||||||||||| |||||||| ||||
Sbjct: 24705366 gccggaggagttccggccggagcggttcggcgacggcgaggc 24705407
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 215 tcaacgagacgctgcgcctgtacccg 240
||||||||||||||||||||||||||
Sbjct: 22345398 tcaacgagacgctgcgcctgtacccg 22345423
Score = 48.1 bits (24), Expect = 0.008
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
||||||||||| |||||| ||| ||||||||| |||||||||||||
Sbjct: 17069220 gacccggcggcatgggagcggcccgacgagttcgtgccggagcggttc 17069173
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 377 gagttcaggccggagcggttccgcgacggc 406
|||||| |||||||||||||| ||||||||
Sbjct: 24697087 gagttccggccggagcggttcggcgacggc 24697116
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 236 acccggtggccccgctgctgctgccgcac 264
||||||||| | |||||||||||||||||
Sbjct: 22272418 acccggtgggcgcgctgctgctgccgcac 22272446
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
|||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 23250069 gacccggcggcgtgggagaggcccgacgagttcgtgccggagcggttc 23250116
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 370 gccggacgagttcaggccggagcggttccgcgacggcaaggc 411
|||||| |||||| |||||||||||||| |||||||| ||||
Sbjct: 25690103 gccggaggagttccggccggagcggttcggcgacggcgaggc 25690144
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 215 tcaacgagacgctgcgcctgtacccg 240
||||||||||||||||||||||||||
Sbjct: 23322711 tcaacgagacgctgcgcctgtacccg 23322736
Score = 48.1 bits (24), Expect = 0.008
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 350 gacccggcggcgtgggaggagccggacgagttcaggccggagcggttc 397
||||||||||| |||||| ||| ||||||||| |||||||||||||
Sbjct: 17520082 gacccggcggcatgggagcggcccgacgagttcgtgccggagcggttc 17520035
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 377 gagttcaggccggagcggttccgcgacggc 406
|||||| |||||||||||||| ||||||||
Sbjct: 25681409 gagttccggccggagcggttcggcgacggc 25681438
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 236 acccggtggccccgctgctgctgccgcac 264
||||||||| | |||||||||||||||||
Sbjct: 23249953 acccggtgggcgcgctgctgctgccgcac 23249981
>gb|CB672252.1|CB672252 OSJNEe06D05.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe06D05 3', mRNA sequence
Length = 736
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 424 gatgctgccgttcgggatgggacggcgcaggtgccccggggag 466
|||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 248 gatgctcccgttcgggatgggccggcggcggtgccccggggag 206
>dbj|AK100633.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109P12, full
insert sequence
Length = 1906
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 193 ctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtaccc 239
|||||||| || |||||| |||||||||||||||| ||| |||||||
Sbjct: 1115 ctgggctatctccagtgcatcatcaacgagacgcttcgcatgtaccc 1161
>dbj|AK110565.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-D04, full
insert sequence
Length = 1862
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 214 atcaacgagacgctgcgcctgtacccggtggccccgctgctgctgccgcac 264
||||| ||||||||||| ||| ||||| ||| ||||||||||||||||||
Sbjct: 1079 atcaaggagacgctgcggctgcacccgccggcgccgctgctgctgccgcac 1129
>emb|AL731578.2|OSJN00229 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017P10,
complete sequence
Length = 175563
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 424 gatgctgccgttcgggatgggacggcgcaggtgccccggggag 466
|||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 27088 gatgctcccgttcgggatgggccggcggcggtgccccggggag 27130
>emb|AL606630.3|OSJN00041 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0046P18,
complete sequence
Length = 140780
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 424 gatgctgccgttcgggatgggacggcgcaggtgccccggggag 466
|||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 74284 gatgctcccgttcgggatgggccggcggcggtgccccggggag 74326
>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0047B10
Length = 158798
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 214 atcaacgagacgctgcgcctgtacccggtggccccgctgctgctgccgcac 264
||||| ||||||||||| ||| ||||| ||| ||||||||||||||||||
Sbjct: 13459 atcaaggagacgctgcggctgcacccgccggcgccgctgctgctgccgcac 13409
>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1596_C06
Length = 124721
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 214 atcaacgagacgctgcgcctgtacccggtggccccgctgctgctgccgcac 264
||||| ||||||||||| ||| ||||| ||| ||||||||||||||||||
Sbjct: 72904 atcaaggagacgctgcggctgcacccgccggcgccgctgctgctgccgcac 72854
>gb|AACV01009000.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009000, whole
genome shotgun sequence
Length = 10764
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 424 gatgctgccgttcgggatgggacggcgcaggtgccccggggag 466
|||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 1443 gatgctcccgttcgggatgggccggcggcggtgccccggggag 1401
>gb|AACV01020124.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020124, whole
genome shotgun sequence
Length = 34569
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 214 atcaacgagacgctgcgcctgtacccggtggccccgctgctgctgccgcac 264
||||| ||||||||||| ||| ||||| ||| ||||||||||||||||||
Sbjct: 16582 atcaaggagacgctgcggctgcacccgccggcgccgctgctgctgccgcac 16632
>ref|XM_469852.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1557
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 193 ctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtaccc 239
|||||||| || |||||| |||||||||||||||| ||| |||||||
Sbjct: 1096 ctgggctatctccagtgcatcatcaacgagacgcttcgcatgtaccc 1142
>ref|XM_471339.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1641
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 424 gatgctgccgttcgggatgggacggcgcaggtgccccggggag 466
|||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 1389 gatgctcccgttcgggatgggccggcggcggtgccccggggag 1431
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,225,927
Number of Sequences: 438736
Number of extensions: 1225927
Number of successful extensions: 9599
Number of sequences better than 0.5: 177
Number of HSP's better than 0.5 without gapping: 185
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8110
Number of HSP's gapped (non-prelim): 1473
length of query: 834
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 813
effective length of database: 2,791,206,460
effective search space: 2269250851980
effective search space used: 2269250851980
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)