BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521919.2.1
(2729 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_466059.1| Oryza sativa (japonica cultivar-group), mRNA 1949 0.0
dbj|AK108535.1| Oryza sativa (japonica cultivar-group) cDNA... 446 e-122
gb|D48464.1|D48464 RICS14669A Rice green shoot Oryza sativa... 440 e-120
gb|AU311881.1|AU311881 AU311881 Oryza sativa anther cDNA Or... 394 e-107
dbj|AP004879.3| Oryza sativa (japonica cultivar-group) geno... 194 2e-046
gb|AACV01004553.1| Oryza sativa (japonica cultivar-group) c... 194 2e-046
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 194 2e-046
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 194 2e-046
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 194 2e-046
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 194 2e-046
gb|AACV01009691.1| Oryza sativa (japonica cultivar-group) c... 178 1e-041
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 178 1e-041
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 178 1e-041
gb|AQ856076.1|AQ856076 nbeb0001A02r CUGI Rice BAC Library (... 165 2e-037
gb|AQ576669.1|AQ576669 nbxb0089J01r CUGI Rice BAC Library O... 151 2e-033
gb|CV733708.1|CV733708 FLO--08-L22.g1 Rice flower lambda ph... 139 9e-030
gb|AACV01004554.1| Oryza sativa (japonica cultivar-group) c... 139 9e-030
dbj|AP004790.3| Oryza sativa (japonica cultivar-group) geno... 139 9e-030
gb|CV733707.1|CV733707 FLO--08-L22.b1 Rice flower lambda ph... 137 4e-029
dbj|AG210010.1| Oryza sativa (japonica cultivar-group) DNA,... 117 3e-023
dbj|AP004777.3| Oryza sativa (japonica cultivar-group) geno... 117 3e-023
gb|AQ690523.1|AQ690523 nbxb0082O11f CUGI Rice BAC Library O... 105 1e-019
gb|AQ271974.1|AQ271974 nbxb0027E13r CUGI Rice BAC Library O... 74 4e-010
gb|AU096669.1|AU096669 AU096669 Rice green shoot Oryza sati... 74 4e-010
emb|AL731641.4| Oryza sativa (japonica cultivar-group) chro... 74 4e-010
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 74 4e-010
gb|AQ864199.1|AQ864199 nbeb0022L19r CUGI Rice BAC Library (... 56 1e-004
gb|C99341.1|C99341 C99341 Rice panicle at ripening stage Or... 56 1e-004
gb|CB668586.1|CB668586 OSJNEd16I04.f OSJNEd Oryza sativa (j... 56 1e-004
gb|CB668587.1|CB668587 OSJNEd16I04.r OSJNEd Oryza sativa (j... 56 1e-004
gb|CF196291.1|CF196291 Azvi2.1_B03 AZ-VI Oryza sativa (japo... 56 1e-004
gb|CF196311.1|CF196311 Azvi2.1_D03 AZ-VI Oryza sativa (japo... 56 1e-004
gb|CF196373.1|CF196373 Azvi2.2_B11 AZ-VI Oryza sativa (japo... 56 1e-004
gb|CF196390.1|CF196390 Azvi2.2_D07 AZ-VI Oryza sativa (japo... 56 1e-004
gb|CF196400.1|CF196400 Azvi2.2_E07 AZ-VI Oryza sativa (japo... 56 1e-004
gb|CF196410.1|CF196410 Azvi2.2_F07 AZ-VI Oryza sativa (japo... 56 1e-004
gb|CF196422.1|CF196422 Azvi2.2_G10 AZ-VI Oryza sativa (japo... 56 1e-004
gb|CF328664.1|CF328664 NACL--03-K20.g1 Rice callus plasmid ... 56 1e-004
gb|CF328834.1|CF328834 NACL--03-O21.b1 Rice callus plasmid ... 56 1e-004
gb|CF329597.1|CF329597 NACL--04-P17.b1 Rice callus plasmid ... 56 1e-004
gb|CF330102.1|CF330102 NACL--05-K23.b1 Rice callus plasmid ... 56 1e-004
gb|CF331462.1|CF331462 NACL--07-J14.g1 Rice callus plasmid ... 56 1e-004
gb|AF136268.1|AF136268 Oryza sativa subsp. japonica starch-... 56 1e-004
dbj|D11082.1|RICBE1 Oryza sativa (japonica cultivar-group) ... 56 1e-004
dbj|D10752.1|RICBE Oryza sativa (japonica cultivar-group) m... 56 1e-004
gb|AY302112.1| Oryza sativa (japonica cultivar-group) starc... 56 1e-004
dbj|AK065121.1| Oryza sativa (japonica cultivar-group) cDNA... 56 1e-004
dbj|AK068920.1| Oryza sativa (japonica cultivar-group) cDNA... 56 1e-004
dbj|AK119436.1| Oryza sativa (japonica cultivar-group) cDNA... 56 1e-004
gb|CF326784.1|CF326784 NACL--01-A02.g1 Rice callus plasmid ... 48 0.026
gb|AU030097.1|AU030097 AU030097 Rice cDNA from immature lea... 46 0.10
gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L1... 46 0.10
gb|AACV01021930.1| Oryza sativa (japonica cultivar-group) c... 46 0.10
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 46 0.10
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.10
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.10
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 46 0.10
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.10
>ref|XM_466059.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2478
Score = 1949 bits (983), Expect = 0.0
Identities = 1791/2065 (86%)
Strand = Plus / Minus
Query: 248 ctggagcatagacgacacatgttctgcttggtgtataaaccgagaatgaatatggcctat 307
||||||||||||| || || |||||||| || | |||||| ||||| || || ||||| |
Sbjct: 2470 ctggagcatagacaacgcaggttctgctaggagaataaactgagaacgagtagggcctgt 2411
Query: 308 tatcatgcgaacagtcggcggtgaagtgctcggctgcgtgatggatcctgctaaatccac 367
| ||||| ||||| ||||| ||||||||||| || | |||||||||||||| ||||||||
Sbjct: 2410 tgtcatgtgaacaatcggcagtgaagtgctctgcagtgtgatggatcctgccaaatccac 2351
Query: 368 caaatagtccagcgtcggagtccaagaccaccttatacaccccaggctttcgacaaccaa 427
|||| |||||||| || |||||||||||||||||||| ||| |||||| ||||||||
Sbjct: 2350 caaagagtccagcatctgagtccaagaccaccttatatttccctggctttaaacaaccaa 2291
Query: 428 tacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaaatctccct 487
||||||||||||||||||||| | || |||||||||||||||||||||| ||||||||
Sbjct: 2290 cacggtagtcaaaatagctgttactccaatggaagttgaacacaaataccagatctccct 2231
Query: 488 tttcgaacacaatcaccttatcctcctcatgtttccgggaaatatactggtgatcagatg 547
| || || | ||||| ||||||||| ||||| || || || || |||||||| || ||||
Sbjct: 2230 tctcaaatataatcatcttatcctcttcatgctttcgagatatgtactggtggtctgatg 2171
Query: 548 tcatgaattcatatttttgctcaagatgttgcattgcctgatcaaactcttgcataccat 607
||||||| ||||||||| ||| ||| ||||| || | ||||||||| |||| |||
Sbjct: 2170 tcatgaacccatatttttcctcgagagactgcatcgcgcggtcaaactctagcatgccac 2111
Query: 608 gatacctaagatagtctgcatcacccaggtcaaatcttcgacgacatttgtcataactgt 667
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 2110 gatacctaagatagtccgcatcacccaggtcaaatcttcgacggcatttatcataactgt 2051
Query: 668 tgttattccctggaataaacttaccacttggaagtctttgcggacctcttggaaaatcta 727
||||||||||||| || || |||||| |||||||| ||| ||| ||||||||||||| |
Sbjct: 2050 tgttattccctgggatgaatttaccatttggaagtacttgtggagctcttggaaaatcaa 1991
Query: 728 tccattcaggatgtccaaactcatttcccatgaaattaagatagccctctcctcctaaac 787
|||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 1990 tccattcaggatgtccgaactcatttcccataaagttaagatagccttctcctcctaacc 1931
Query: 788 ccattgtgataagtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttg 847
|||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| ||||
Sbjct: 1930 ccattgtgataagtctaatcattttatgcaatgctattccacgatcaatgctaggtgttg 1871
Query: 848 aaggtctatcgagggccatgaaatcatacatatccttgtccatcaaccaaaacgcaatag 907
||||| || || ||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct: 1870 ccggtctgtccagagccataaaatcatacatatccttgtccatcaaccagaatgcaatag 1811
Query: 908 tcttgtcgccgactaatgcttgatcatgactttcagcataagttacacacttctctaacc 967
| ||||| || |||| ||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 1810 ttttgtcaccaactagtgcttgatcatgactttcagcataagtaacacacttctctgacc 1751
Query: 968 acctcctatttgtcagtgtgtgcacaatatcacccatcttccaagtttcatcactttgct 1027
|||| || || |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1750 accttctgttagtcagtgtgtgcacaatatcacccatcttccaagattcatcactttgct 1691
Query: 1028 tgagaaggtcaatccatttgtcagccacagccatatgcatccgatagtcaaaacctaccc 1087
|||| || |||||||||||||||| ||||||||||| | ||||| |||||||| ||||
Sbjct: 1690 tgaggagttcaatccatttgtcaggaacagccatatgaaggcgataatcaaaaccaaccc 1631
Query: 1088 caccatcgtgaacaggaagggcaaatgtaggcattccactaacatcttcaccaatggtta 1147
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 1630 caccatcttgaacaggaagggcaaatgtaggcattccactgacatcttcaccgatggtta 1571
Query: 1148 cagcctcaggataaagtccatgaattagatcatttaccagcatcaagtaaaccactgcat 1207
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 1570 tggcctcaggataaagtccatgaattaaatcatttaccagcatcaagtaaactactgcat 1511
Query: 1208 ctacatcggtggcaaagccaaaatactcattgaagttccccgtaaatgttacttgtaatc 1267
| |||| |||||||| ||||| || ||| || ||||||||||||||| |||||||||||
Sbjct: 1510 cagcatcagtggcaaatccaaagtattcactgtagttccccgtaaatgctacttgtaatc 1451
Query: 1268 cgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccatcaaacttatatt 1327
| || |||||||||||||| ||||| ||||| ||||| | |||||||||||||||||| |
Sbjct: 1450 catgatgagtgtacatcattgaggttacaccgtcaaatctgaaaccatcaaacttatact 1391
Query: 1328 cctcgagccaccatctagcattggagagaagaaatcttaaaacttcccagttcccatagt 1387
|||||||||||||||| |||||||| || |||||||||| ||||||||| ||||||||||
Sbjct: 1390 cctcgagccaccatcttgcattggatagtagaaatcttagaacttcccaattcccatagt 1331
Query: 1388 taaataggcgagaatcccacatccagtgatggccacgtggaccactgtgaaagtaatgtg 1447
| || |||||||||||||||||||| |||||||| |||| |||||| ||||||||||| |
Sbjct: 1330 tgaaaaggcgagaatcccacatccaatgatggccgcgtgaaccactatgaaagtaatgcg 1271
Query: 1448 tatctgtaccatcaaaaccattcaacccatccagagtattacttgacgcatgactatgaa 1507
||||||||||||||||||| ||||||||||| || |||||| |||||||||| || ||||
Sbjct: 1270 tatctgtaccatcaaaaccgttcaacccatctagggtattatttgacgcatggctgtgaa 1211
Query: 1508 ccacatccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagacttcaatt 1567
| ||||||||||| || | |||||||||||||| ||| |||||||||| ||||| || |
Sbjct: 1210 caacatccatgagcacaactaaaccaagctcatgagctttatcaatcaatgactttaaat 1151
Query: 1568 cttctggggtaccaaaacgactacttggcgcnnnnnnnttagttacatggtatccaaagc 1627
|||||||||| || |||||||||||||| || || || |||||||| |||||||
Sbjct: 1150 cttctggggtcccgaaacgactacttggtgcaaagaaattggtgacatggtacccaaagc 1091
Query: 1628 ttccataatatgagtgctcttggattgccattatttgcactgcattgtatccaagnnnnn 1687
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1090 ttccataatatgcatgctcttgaattgccattatttgcactgcattgtatccaagctttt 1031
Query: 1688 nnattcttgggaggacttcatccctaaagtttacatatgtgtttatcttcggttccgggc 1747
|||||||| || || ||||||||||||||| |||| ||||| ||||| || |||| ||
Sbjct: 1030 tgattcttggaagcacctcatccctaaagtttgcatacgtgttgatctttggctccgtgc 971
Query: 1748 tactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggttgcgcat 1807
|||||||||| ||||| ||||| |||||||||||||| ||||||| ||||||||| | ||
Sbjct: 970 tactcattccaacatgagtttcgtatatccgcaatgactttggtcttttaggttgaggat 911
Query: 1808 gcctgaacacatactttacctcttcaggaggatcataataaatcccatcatatggtattt 1867
|| |||| | ||||| |||||||||||||||||||||| || |||| ||||| ||||
Sbjct: 910 gcttgaatatgtacttctcctcttcaggaggatcataatatattccattgtatgggattt 851
Query: 1868 ctcctggggcctgcactgagtacttgatccaggctggaattgaatcctttatccctgatg 1927
|||||| ||||||||| ||||||||||||||||| ||||| ||||||||||| || ||||
Sbjct: 850 ctcctgcggcctgcacagagtacttgatccaggcaggaatagaatcctttataccagatg 791
Query: 1928 gagtatccattctcacctttacacgagatccatgaggaataggtgatgtaccatctgcat 1987
|||| ||||||| |||||||||||| || ||||| |||||||| |||| ||||| ||||
Sbjct: 790 gagtttccattcgcacctttacacgtgagccatgtggaataggagatgagccatcagcat 731
Query: 1988 tgttaggcagaaaaatttcccaaacaccaaactcatttttgctcatacgatctgcatttg 2047
|||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 730 tgttaggcagaaaaatctcccaaacaccaaactcatttttgctcatgcggtctgcatttg 671
Query: 2048 gatcccagttgttgaagtcacccaccaatgctgcagaaaatgctccaggagcccattctc 2107
||| ||| |||||||||||||| || |||||||||||| ||| || |||||||||||||
Sbjct: 670 gattccaattgttgaagtcacctactaatgctgcagaatgtgccccgggagcccattctc 611
Query: 2108 gatatgtgataccttccgcgctgcgattaaatccaaacttctcataactacgggagaagg 2167
|||| |||| |||||| || ||| |||||||||||||||||||||||| || || || |
Sbjct: 610 gataagtgacaccttcagcactgtgattaaatccaaacttctcataaccgcgagaaaatg 551
Query: 2168 cttccaagcctccttcatgttcatcaatgtctgaacggattcttctatagaggctgtacc 2227
||||| |||||||||| | ||||||||||||||| | ||| ||||| ||||| || |
Sbjct: 550 tttccagtcctccttcatactgatcaatgtctgaacgcagtctcctatataggctatatc 491
Query: 2228 gatactcaagatggtacttatagccttgcaacatggggtcaatctggaatattttttgtc 2287
|||| |||||||||||||||||||| | | ||| | ||| ||||||||||||||||| |
Sbjct: 490 gatattcaagatggtacttatagccattaagcatagagtccatctggaatattttttgcc 431
Query: 2288 catcgcttggtggggggaccactcg 2312
|||| | || ||| ||||| |||||
Sbjct: 430 catctcctgttggtgggacaactcg 406
>dbj|AK108535.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-C07, full
insert sequence
Length = 837
Score = 446 bits (225), Expect = e-122
Identities = 459/537 (85%)
Strand = Plus / Minus
Query: 248 ctggagcatagacgacacatgttctgcttggtgtataaaccgagaatgaatatggcctat 307
||||||||||||| || || |||| ||| || | |||||| ||||| || || ||||| |
Sbjct: 537 ctggagcatagacaacgcaggttccgctaggagaataaactgagaacgagtagggcctgt 478
Query: 308 tatcatgcgaacagtcggcggtgaagtgctcggctgcgtgatggatcctgctaaatccac 367
| ||||| ||||| ||||| ||||||||||| || | |||||||||||||| ||||||||
Sbjct: 477 tgtcatgtgaacaatcggcagtgaagtgctctgcagtgtgatggatcctgccaaatccac 418
Query: 368 caaatagtccagcgtcggagtccaagaccaccttatacaccccaggctttcgacaaccaa 427
|||| |||||||| || |||||||||||||||||||| ||| |||||| ||||||||
Sbjct: 417 caaagagtccagcatctgagtccaagaccaccttatatttccctggctttaaacaaccaa 358
Query: 428 tacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaaatctccct 487
||||||||||||||||||||| | || |||||||||||||||||||||| ||||||||
Sbjct: 357 cacggtagtcaaaatagctgttactccaatggaagttgaacacaaataccagatctccct 298
Query: 488 tttcgaacacaatcaccttatcctcctcatgtttccgggaaatatactggtgatcagatg 547
| || || | ||||| ||||||||| ||||| || || || || |||||||| || ||||
Sbjct: 297 tctcaaatataatcatcttatcctcttcatgctttcgagatatgtactggtggtctgatg 238
Query: 548 tcatgaattcatatttttgctcaagatgttgcattgcctgatcaaactcttgcataccat 607
||||||| ||||||||| ||| ||| ||||| || | ||||||||| |||| |||
Sbjct: 237 tcatgaacccatatttttcctcgagagactgcatcgcgcggtcaaactctagcatgccac 178
Query: 608 gatacctaagatagtctgcatcacccaggtcaaatcttcgacgacatttgtcataactgt 667
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 177 gatacctaagatagtccgcatcacccaggtcaaatcttcgacggcatttatcataactgt 118
Query: 668 tgttattccctggaataaacttaccacttggaagtctttgcggacctcttggaaaatcta 727
||||||||||||| || || |||||| |||||||| ||| ||| ||||||||||||| |
Sbjct: 117 tgttattccctgggatgaatttaccatttggaagtacttgtggagctcttggaaaatcaa 58
Query: 728 tccattcaggatgtccaaactcatttcccatgaaattaagatagccctctcctccta 784
|||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||
Sbjct: 57 tccattcaggatgtccgaactcatttcccataaagttaagatagccttctcctccta 1
>gb|D48464.1|D48464 RICS14669A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 448
Score = 440 bits (222), Expect = e-120
Identities = 377/429 (87%)
Strand = Plus / Minus
Query: 499 atcaccttatcctcctcatgtttccgggaaatatactggtgatcagatgtcatgaattca 558
||||||||||||||||| ||||| || || ||||||||||| ||||||||||||||| ||
Sbjct: 429 atcaccttatcctcctcgtgtttgcgcgatatatactggtgctcagatgtcatgaatcca 370
Query: 559 tatttttgctcaagatgttgcattgcctgatcaaactcttgcataccatgatacctaaga 618
||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 369 tatttttcctcaagatgctgcatggcctgatcaaactcttgcataccatgatatctaaga 310
Query: 619 tagtctgcatcacccaggtcaaatcttcgacgacatttgtcataactgttgttattccct 678
|| |||||||| || ||||||||||| ||||| ||||| ||| |||||| ||| || |||
Sbjct: 309 taatctgcatctccaaggtcaaatctacgacggcatttatcaaaactgtagttgtttcct 250
Query: 679 ggaataaacttaccacttggaagtctttgcggacctcttggaaaatctatccattcagga 738
|| | | | ||| ||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct: 249 gggaggaccgagccatttggaagactttgcgggcctcttgggaaatctatccattcagga 190
Query: 739 tgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattgtgata 798
|| |||||||||||||||||||||||||||||||| || |||||||| ||||| |||| |
Sbjct: 189 tgcccaaactcatttcccatgaaattaagatagccttcgcctcctaagcccatggtgaca 130
Query: 799 agtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtctatcg 858
|| |||||||| ||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 129 agcctaatcattttatgtaatgctatcccacgatcaatgcgaggtgttgaaggtctgtct 70
Query: 859 agggccatgaaatcatacatatccttgtccatcaaccaaaacgcaatagtcttgtcgccg 918
|| ||||| ||||||||||||||||| ||||||||||| || |||||||||||||| ||
Sbjct: 69 agagccataaaatcatacatatccttatccatcaaccagaatgcaatagtcttgtcaccn 10
Query: 919 actaatgct 927
|||| ||||
Sbjct: 9 actagtgct 1
>gb|AU311881.1|AU311881 AU311881 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA0138, mRNA sequence
Length = 425
Score = 394 bits (199), Expect = e-107
Identities = 358/411 (87%)
Strand = Plus / Minus
Query: 498 aatcaccttatcctcctcatgtttccgggaaatatactggtgatcagatgtcatgaattc 557
||||| ||||||||| ||||| || || || || |||||||| || ||||||||||| |
Sbjct: 416 aatcatcttatcctcttcatgctttcgagatatgtactggtggtctgatgtcatgaaccc 357
Query: 558 atatttttgctcaagatgttgcattgcctgatcaaactcttgcataccatgatacctaag 617
|||||||| ||| ||| ||||| || | ||||||||| |||| ||| ||||||||||
Sbjct: 356 atatttttcctcgagagactgcatcgcgcggtcaaactctagcatgccacgatacctaag 297
Query: 618 atagtctgcatcacccaggtcaaatcttcgacgacatttgtcataactgttgttattccc 677
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 296 atagtccgcatcacccaggtcaaatcttcgacggcatttatcataactgttgttattccc 237
Query: 678 tggaataaacttaccacttggaagtctttgcggacctcttggaaaatctatccattcagg 737
||| || || |||||| |||||||| ||| ||| ||||||||||||| |||||||||||
Sbjct: 236 tgggatgaatttaccatttggaagtacttgtggagctcttggaaaatcaatccattcagg 177
Query: 738 atgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattgtgat 797
|||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||||||
Sbjct: 176 atgtccgaactcatttcccataaagttaagatagccttctcctcctaaccccattgtgat 117
Query: 798 aagtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtctatc 857
|||||||||||| ||||| |||||||| |||||||||||| |||| |||| ||||| ||
Sbjct: 116 aagtctaatcattttatgcaatgctattccacgatcaatgctaggtgttgccggtctgtc 57
Query: 858 gagggccatgaaatcatacatatccttgtccatcaaccaaaacgcaatagt 908
|| ||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 56 cagagccataaaatcatacatatccttgtccatcaaccagaatgcaatagt 6
>dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0475F05
Length = 147522
Score = 194 bits (98), Expect = 2e-046
Identities = 134/146 (91%)
Strand = Plus / Plus
Query: 881 ccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatcatgacttt 940
|||||||||||||||| || |||||||| ||||| || |||| |||||||||||||||||
Sbjct: 63662 ccttgtccatcaaccagaatgcaatagttttgtcaccaactagtgcttgatcatgacttt 63721
Query: 941 cagcataagttacacacttctctaaccacctcctatttgtcagtgtgtgcacaatatcac 1000
|||||||||| |||||||||||| ||||||| || || ||||||||||||||||||||||
Sbjct: 63722 cagcataagtaacacacttctctgaccaccttctgttagtcagtgtgtgcacaatatcac 63781
Query: 1001 ccatcttccaagtttcatcactttgc 1026
|||||||||||| |||||||||||||
Sbjct: 63782 ccatcttccaagattcatcactttgc 63807
Score = 170 bits (86), Expect = 3e-039
Identities = 134/150 (89%)
Strand = Plus / Plus
Query: 734 caggatgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattg 793
|||||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||
Sbjct: 63061 caggatgtccgaactcatttcccataaagttaagatagccttctcctcctaaccccattg 63120
Query: 794 tgataagtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtc 853
|||||||||||||||| ||||| |||||||| |||||||||||| |||| |||| ||||
Sbjct: 63121 tgataagtctaatcattttatgcaatgctattccacgatcaatgctaggtgttgccggtc 63180
Query: 854 tatcgagggccatgaaatcatacatatcct 883
| || || ||||| ||||||||||||||||
Sbjct: 63181 tgtccagagccataaaatcatacatatcct 63210
Score = 165 bits (83), Expect = 2e-037
Identities = 119/131 (90%)
Strand = Plus / Plus
Query: 1369 acttcccagttcccatagttaaataggcgagaatcccacatccagtgatggccacgtgga 1428
|||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||| |
Sbjct: 66223 acttcccaattcccatagttgaaaaggcgagaatcccacatccaatgatggccgcgtgaa 66282
Query: 1429 ccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaacccatccagagtatta 1488
||||| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 66283 ccactatgaaagtaatgcgtatctgtaccatcaaaaccgttcaacccatctagggtatta 66342
Query: 1489 cttgacgcatg 1499
||||||||||
Sbjct: 66343 tttgacgcatg 66353
Score = 151 bits (76), Expect = 2e-033
Identities = 118/132 (89%)
Strand = Plus / Plus
Query: 1124 cactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagatcattta 1183
|||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 65741 cacttacatcttcaccgatggttatggcctcaggataaagtccatgaattaaatcattta 65800
Query: 1184 ccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaatactcattgaagt 1243
|||||||||||||||| |||||||| |||| |||||||| ||||| || ||| || |||
Sbjct: 65801 ccagcatcaagtaaactactgcatcagcatcagtggcaaatccaaagtattcactgtagt 65860
Query: 1244 tccccgtaaatg 1255
||||||||||||
Sbjct: 65861 tccccgtaaatg 65872
Score = 139 bits (70), Expect = 9e-030
Identities = 109/122 (89%)
Strand = Plus / Plus
Query: 1824 tacctcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcac 1883
|||||||||||||||||||||||| || |||| ||||| |||||||||| |||||||||
Sbjct: 68729 tacctcttcaggaggatcataatatattccattgtatgggatttctcctgcggcctgcac 68788
Query: 1884 tgagtacttgatccaggctggaattgaatcctttatccctgatggagtatccattctcac 1943
||||||||||||||||| ||||| ||||||||||| || |||||||| ||||||| |||
Sbjct: 68789 agagtacttgatccaggcaggaatagaatcctttataccagatggagtttccattcgcac 68848
Query: 1944 ct 1945
||
Sbjct: 68849 ct 68850
Score = 131 bits (66), Expect = 2e-027
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 1257 tacttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccatc 1316
|||||||||||| || |||||||||||||| ||||| ||||| ||||| | |||||||||
Sbjct: 66014 tacttgtaatccatgatgagtgtacatcattgaggttacaccgtcaaatctgaaaccatc 66073
Query: 1317 aaacttatattcctcgagccaccatctagcattggagagaagaaatctta 1366
||||||||| ||||||||||||||||| |||||||| || ||||||||||
Sbjct: 66074 aaacttatactcctcgagccaccatcttgcattggatagtagaaatctta 66123
Score = 123 bits (62), Expect = 5e-025
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 1026 cttgagaaggtcaatccatttgtcagccacagccatatgcatccgatagtcaaaacctac 1085
|||||| || |||||||||||||||| ||||||||||| | ||||| |||||||| ||
Sbjct: 64293 cttgaggagttcaatccatttgtcaggaacagccatatgaaggcgataatcaaaaccaac 64352
Query: 1086 cccaccatcgtgaacaggaagggcaaatgtaggcattccact 1127
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 64353 cccaccatcttgaacaggaagggcaaatgtaggcattccact 64394
Score = 117 bits (59), Expect = 3e-023
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 1621 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 1680
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 67851 ccaaagcttccataatatgcatgctcttgaattgccattatttgcactgcattgtatcca 67910
Query: 1681 agnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgtttatctt 1736
|| |||||||| || || ||||||||||||||| |||| ||||| |||||
Sbjct: 67911 agctttttgattcttggaagcacctcatccctaaagtttgcatacgtgttgatctt 67966
Score = 117 bits (59), Expect = 3e-023
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 632 ccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaacttac 691
||||||||||||||||||| ||||| ||||||||||||||||||||||| || || ||||
Sbjct: 62818 ccaggtcaaatcttcgacggcatttatcataactgttgttattccctgggatgaatttac 62877
Query: 692 cacttggaagtctttgcggacctcttggaaaatctatccattc 734
|| |||||||| ||| ||| ||||||||||||| ||||||||
Sbjct: 62878 catttggaagtacttgtggagctcttggaaaatcaatccattc 62920
Score = 117 bits (59), Expect = 3e-023
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 420 acaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaa 479
|||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 61871 acaaccaacacggtagtcaaaatagctgttactccaatggaagttgaacacaaataccag 61930
Query: 480 atctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatatactggtg 539
||||||||| || || | ||||| ||||||||| ||||| || || || || ||||||||
Sbjct: 61931 atctcccttctcaaatataatcatcttatcctcttcatgctttcgagatatgtactggtg 61990
Query: 540 atcagatgtcatgaa 554
|| |||||||||||
Sbjct: 61991 gtctgatgtcatgaa 62005
Score = 101 bits (51), Expect = 2e-018
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||||||||| || ||||| |||||||| |||| ||||| ||||||||||||||||||
Sbjct: 68931 acctttacacgtgagccatgtggaataggagatgagccatcagcattgttaggcagaaaa 68990
Query: 2002 atttcccaaacaccaaactcatt 2024
|| ||||||||||||||||||||
Sbjct: 68991 atctcccaaacaccaaactcatt 69013
Score = 91.7 bits (46), Expect = 2e-015
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 323 cggcggtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgt 382
|||| ||||||||||| || | |||||||||||||| |||||||||||| |||||||| |
Sbjct: 61149 cggcagtgaagtgctctgcagtgtgatggatcctgccaaatccaccaaagagtccagcat 61208
Query: 383 cggagtccaagaccacct 400
| ||||||||||||||||
Sbjct: 61209 ctgagtccaagaccacct 61226
Score = 87.7 bits (44), Expect = 3e-014
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 1504 tgaaccacatccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagacttc 1563
||||| ||||||||||| || | |||||||||||||| ||| |||||||||| |||||
Sbjct: 67409 tgaacaacatccatgagcacaactaaaccaagctcatgagctttatcaatcaatgacttt 67468
Query: 1564 aattcttctggggtaccaaaacgactacttgg 1595
|| ||||||||||| || ||||||||||||||
Sbjct: 67469 aaatcttctggggtcccgaaacgactacttgg 67500
Score = 73.8 bits (37), Expect = 4e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1746 gctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggttg 1802
|||||||||||| ||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct: 68459 gctactcattccaacatgagtttcgtatatccgcaatgactttggtcttttaggttg 68515
Score = 71.9 bits (36), Expect = 2e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 2025 tttgctcatacgatctgcatttggatcccagttgttgaagtcacccaccaatgctgcaga 2084
||||||||| || ||||||||||||| ||| |||||||||||||| || |||||||||||
Sbjct: 69629 tttgctcatgcggtctgcatttggattccaattgttgaagtcacctactaatgctgcaga 69688
Score = 65.9 bits (33), Expect = 1e-007
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 2224 taccgatactcaagatggtacttatagccttgcaacatggggtcaatctggaatattttt 2283
|||||||| |||||||||||||||||||| | | ||| | ||| |||||||||||||||
Sbjct: 70841 taccgatattcaagatggtacttatagccattaagcatagagtccatctggaatattttt 70900
Query: 2284 tgtccatcgcttggtggggggaccactcg 2312
|| ||||| | || ||| ||||| |||||
Sbjct: 70901 tgcccatctcctgttggtgggacaactcg 70929
Score = 61.9 bits (31), Expect = 2e-006
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 2132 gattaaatccaaacttctcataactacgggagaaggcttccaagcctccttcatgttcat 2191
|||||||||||||||||||||||| || || || | ||||| |||||||||| | ||
Sbjct: 70023 gattaaatccaaacttctcataaccgcgagaaaatgtttccagtcctccttcatactgat 70082
Query: 2192 caatgtctgaacggattcttctatagaggct 2222
||||||||||||| | ||| ||||| |||||
Sbjct: 70083 caatgtctgaacgcagtctcctatataggct 70113
Score = 58.0 bits (29), Expect = 3e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 589 tcaaactcttgcataccatgatacctaagatagtctgcatcaccc 633
||||||||| |||| ||| |||||||||||||||| |||||||||
Sbjct: 62541 tcaaactctagcatgccacgatacctaagatagtccgcatcaccc 62585
>gb|AACV01004553.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004553, whole
genome shotgun sequence
Length = 12903
Score = 194 bits (98), Expect = 2e-046
Identities = 134/146 (91%)
Strand = Plus / Plus
Query: 881 ccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatcatgacttt 940
|||||||||||||||| || |||||||| ||||| || |||| |||||||||||||||||
Sbjct: 7504 ccttgtccatcaaccagaatgcaatagttttgtcaccaactagtgcttgatcatgacttt 7563
Query: 941 cagcataagttacacacttctctaaccacctcctatttgtcagtgtgtgcacaatatcac 1000
|||||||||| |||||||||||| ||||||| || || ||||||||||||||||||||||
Sbjct: 7564 cagcataagtaacacacttctctgaccaccttctgttagtcagtgtgtgcacaatatcac 7623
Query: 1001 ccatcttccaagtttcatcactttgc 1026
|||||||||||| |||||||||||||
Sbjct: 7624 ccatcttccaagattcatcactttgc 7649
Score = 170 bits (86), Expect = 3e-039
Identities = 134/150 (89%)
Strand = Plus / Plus
Query: 734 caggatgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattg 793
|||||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||
Sbjct: 6903 caggatgtccgaactcatttcccataaagttaagatagccttctcctcctaaccccattg 6962
Query: 794 tgataagtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtc 853
|||||||||||||||| ||||| |||||||| |||||||||||| |||| |||| ||||
Sbjct: 6963 tgataagtctaatcattttatgcaatgctattccacgatcaatgctaggtgttgccggtc 7022
Query: 854 tatcgagggccatgaaatcatacatatcct 883
| || || ||||| ||||||||||||||||
Sbjct: 7023 tgtccagagccataaaatcatacatatcct 7052
Score = 165 bits (83), Expect = 2e-037
Identities = 119/131 (90%)
Strand = Plus / Plus
Query: 1369 acttcccagttcccatagttaaataggcgagaatcccacatccagtgatggccacgtgga 1428
|||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||| |
Sbjct: 10064 acttcccaattcccatagttgaaaaggcgagaatcccacatccaatgatggccgcgtgaa 10123
Query: 1429 ccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaacccatccagagtatta 1488
||||| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 10124 ccactatgaaagtaatgcgtatctgtaccatcaaaaccgttcaacccatctagggtatta 10183
Query: 1489 cttgacgcatg 1499
||||||||||
Sbjct: 10184 tttgacgcatg 10194
Score = 151 bits (76), Expect = 2e-033
Identities = 118/132 (89%)
Strand = Plus / Plus
Query: 1124 cactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagatcattta 1183
|||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 9582 cacttacatcttcaccgatggttatggcctcaggataaagtccatgaattaaatcattta 9641
Query: 1184 ccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaatactcattgaagt 1243
|||||||||||||||| |||||||| |||| |||||||| ||||| || ||| || |||
Sbjct: 9642 ccagcatcaagtaaactactgcatcagcatcagtggcaaatccaaagtattcactgtagt 9701
Query: 1244 tccccgtaaatg 1255
||||||||||||
Sbjct: 9702 tccccgtaaatg 9713
Score = 131 bits (66), Expect = 2e-027
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 1257 tacttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccatc 1316
|||||||||||| || |||||||||||||| ||||| ||||| ||||| | |||||||||
Sbjct: 9855 tacttgtaatccatgatgagtgtacatcattgaggttacaccgtcaaatctgaaaccatc 9914
Query: 1317 aaacttatattcctcgagccaccatctagcattggagagaagaaatctta 1366
||||||||| ||||||||||||||||| |||||||| || ||||||||||
Sbjct: 9915 aaacttatactcctcgagccaccatcttgcattggatagtagaaatctta 9964
Score = 123 bits (62), Expect = 5e-025
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 1026 cttgagaaggtcaatccatttgtcagccacagccatatgcatccgatagtcaaaacctac 1085
|||||| || |||||||||||||||| ||||||||||| | ||||| |||||||| ||
Sbjct: 8134 cttgaggagttcaatccatttgtcaggaacagccatatgaaggcgataatcaaaaccaac 8193
Query: 1086 cccaccatcgtgaacaggaagggcaaatgtaggcattccact 1127
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 8194 cccaccatcttgaacaggaagggcaaatgtaggcattccact 8235
Score = 117 bits (59), Expect = 3e-023
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 1621 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 1680
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 11692 ccaaagcttccataatatgcatgctcttgaattgccattatttgcactgcattgtatcca 11751
Query: 1681 agnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgtttatctt 1736
|| |||||||| || || ||||||||||||||| |||| ||||| |||||
Sbjct: 11752 agctttttgattcttggaagcacctcatccctaaagtttgcatacgtgttgatctt 11807
Score = 117 bits (59), Expect = 3e-023
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 632 ccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaacttac 691
||||||||||||||||||| ||||| ||||||||||||||||||||||| || || ||||
Sbjct: 6660 ccaggtcaaatcttcgacggcatttatcataactgttgttattccctgggatgaatttac 6719
Query: 692 cacttggaagtctttgcggacctcttggaaaatctatccattc 734
|| |||||||| ||| ||| ||||||||||||| ||||||||
Sbjct: 6720 catttggaagtacttgtggagctcttggaaaatcaatccattc 6762
Score = 117 bits (59), Expect = 3e-023
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 420 acaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaa 479
|||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 5713 acaaccaacacggtagtcaaaatagctgttactccaatggaagttgaacacaaataccag 5772
Query: 480 atctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatatactggtg 539
||||||||| || || | ||||| ||||||||| ||||| || || || || ||||||||
Sbjct: 5773 atctcccttctcaaatataatcatcttatcctcttcatgctttcgagatatgtactggtg 5832
Query: 540 atcagatgtcatgaa 554
|| |||||||||||
Sbjct: 5833 gtctgatgtcatgaa 5847
Score = 91.7 bits (46), Expect = 2e-015
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 323 cggcggtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgt 382
|||| ||||||||||| || | |||||||||||||| |||||||||||| |||||||| |
Sbjct: 4991 cggcagtgaagtgctctgcagtgtgatggatcctgccaaatccaccaaagagtccagcat 5050
Query: 383 cggagtccaagaccacct 400
| ||||||||||||||||
Sbjct: 5051 ctgagtccaagaccacct 5068
Score = 87.7 bits (44), Expect = 3e-014
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 1504 tgaaccacatccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagacttc 1563
||||| ||||||||||| || | |||||||||||||| ||| |||||||||| |||||
Sbjct: 11250 tgaacaacatccatgagcacaactaaaccaagctcatgagctttatcaatcaatgacttt 11309
Query: 1564 aattcttctggggtaccaaaacgactacttgg 1595
|| ||||||||||| || ||||||||||||||
Sbjct: 11310 aaatcttctggggtcccgaaacgactacttgg 11341
Score = 73.8 bits (37), Expect = 4e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1746 gctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggttg 1802
|||||||||||| ||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct: 12300 gctactcattccaacatgagtttcgtatatccgcaatgactttggtcttttaggttg 12356
Score = 58.0 bits (29), Expect = 3e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 589 tcaaactcttgcataccatgatacctaagatagtctgcatcaccc 633
||||||||| |||| ||| |||||||||||||||| |||||||||
Sbjct: 6383 tcaaactctagcatgccacgatacctaagatagtccgcatcaccc 6427
>ref|NT_107180.1| Oryza sativa (japonica cultivar-group)
Length = 6019143
Score = 194 bits (98), Expect = 2e-046
Identities = 134/146 (91%)
Strand = Plus / Plus
Query: 881 ccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatcatgacttt 940
|||||||||||||||| || |||||||| ||||| || |||| |||||||||||||||||
Sbjct: 562413 ccttgtccatcaaccagaatgcaatagttttgtcaccaactagtgcttgatcatgacttt 562472
Query: 941 cagcataagttacacacttctctaaccacctcctatttgtcagtgtgtgcacaatatcac 1000
|||||||||| |||||||||||| ||||||| || || ||||||||||||||||||||||
Sbjct: 562473 cagcataagtaacacacttctctgaccaccttctgttagtcagtgtgtgcacaatatcac 562532
Query: 1001 ccatcttccaagtttcatcactttgc 1026
|||||||||||| |||||||||||||
Sbjct: 562533 ccatcttccaagattcatcactttgc 562558
Score = 170 bits (86), Expect = 3e-039
Identities = 134/150 (89%)
Strand = Plus / Plus
Query: 734 caggatgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattg 793
|||||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||
Sbjct: 561812 caggatgtccgaactcatttcccataaagttaagatagccttctcctcctaaccccattg 561871
Query: 794 tgataagtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtc 853
|||||||||||||||| ||||| |||||||| |||||||||||| |||| |||| ||||
Sbjct: 561872 tgataagtctaatcattttatgcaatgctattccacgatcaatgctaggtgttgccggtc 561931
Query: 854 tatcgagggccatgaaatcatacatatcct 883
| || || ||||| ||||||||||||||||
Sbjct: 561932 tgtccagagccataaaatcatacatatcct 561961
Score = 165 bits (83), Expect = 2e-037
Identities = 119/131 (90%)
Strand = Plus / Plus
Query: 1369 acttcccagttcccatagttaaataggcgagaatcccacatccagtgatggccacgtgga 1428
|||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||| |
Sbjct: 564974 acttcccaattcccatagttgaaaaggcgagaatcccacatccaatgatggccgcgtgaa 565033
Query: 1429 ccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaacccatccagagtatta 1488
||||| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 565034 ccactatgaaagtaatgcgtatctgtaccatcaaaaccgttcaacccatctagggtatta 565093
Query: 1489 cttgacgcatg 1499
||||||||||
Sbjct: 565094 tttgacgcatg 565104
Score = 151 bits (76), Expect = 2e-033
Identities = 118/132 (89%)
Strand = Plus / Plus
Query: 1124 cactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagatcattta 1183
|||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 564492 cacttacatcttcaccgatggttatggcctcaggataaagtccatgaattaaatcattta 564551
Query: 1184 ccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaatactcattgaagt 1243
|||||||||||||||| |||||||| |||| |||||||| ||||| || ||| || |||
Sbjct: 564552 ccagcatcaagtaaactactgcatcagcatcagtggcaaatccaaagtattcactgtagt 564611
Query: 1244 tccccgtaaatg 1255
||||||||||||
Sbjct: 564612 tccccgtaaatg 564623
Score = 139 bits (70), Expect = 9e-030
Identities = 109/122 (89%)
Strand = Plus / Plus
Query: 1824 tacctcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcac 1883
|||||||||||||||||||||||| || |||| ||||| |||||||||| |||||||||
Sbjct: 567480 tacctcttcaggaggatcataatatattccattgtatgggatttctcctgcggcctgcac 567539
Query: 1884 tgagtacttgatccaggctggaattgaatcctttatccctgatggagtatccattctcac 1943
||||||||||||||||| ||||| ||||||||||| || |||||||| ||||||| |||
Sbjct: 567540 agagtacttgatccaggcaggaatagaatcctttataccagatggagtttccattcgcac 567599
Query: 1944 ct 1945
||
Sbjct: 567600 ct 567601
Score = 131 bits (66), Expect = 2e-027
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 1257 tacttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccatc 1316
|||||||||||| || |||||||||||||| ||||| ||||| ||||| | |||||||||
Sbjct: 564765 tacttgtaatccatgatgagtgtacatcattgaggttacaccgtcaaatctgaaaccatc 564824
Query: 1317 aaacttatattcctcgagccaccatctagcattggagagaagaaatctta 1366
||||||||| ||||||||||||||||| |||||||| || ||||||||||
Sbjct: 564825 aaacttatactcctcgagccaccatcttgcattggatagtagaaatctta 564874
Score = 123 bits (62), Expect = 5e-025
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 1026 cttgagaaggtcaatccatttgtcagccacagccatatgcatccgatagtcaaaacctac 1085
|||||| || |||||||||||||||| ||||||||||| | ||||| |||||||| ||
Sbjct: 563044 cttgaggagttcaatccatttgtcaggaacagccatatgaaggcgataatcaaaaccaac 563103
Query: 1086 cccaccatcgtgaacaggaagggcaaatgtaggcattccact 1127
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 563104 cccaccatcttgaacaggaagggcaaatgtaggcattccact 563145
Score = 117 bits (59), Expect = 3e-023
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 1621 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 1680
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 566602 ccaaagcttccataatatgcatgctcttgaattgccattatttgcactgcattgtatcca 566661
Query: 1681 agnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgtttatctt 1736
|| |||||||| || || ||||||||||||||| |||| ||||| |||||
Sbjct: 566662 agctttttgattcttggaagcacctcatccctaaagtttgcatacgtgttgatctt 566717
Score = 117 bits (59), Expect = 3e-023
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 632 ccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaacttac 691
||||||||||||||||||| ||||| ||||||||||||||||||||||| || || ||||
Sbjct: 561569 ccaggtcaaatcttcgacggcatttatcataactgttgttattccctgggatgaatttac 561628
Query: 692 cacttggaagtctttgcggacctcttggaaaatctatccattc 734
|| |||||||| ||| ||| ||||||||||||| ||||||||
Sbjct: 561629 catttggaagtacttgtggagctcttggaaaatcaatccattc 561671
Score = 117 bits (59), Expect = 3e-023
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 420 acaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaa 479
|||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 560622 acaaccaacacggtagtcaaaatagctgttactccaatggaagttgaacacaaataccag 560681
Query: 480 atctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatatactggtg 539
||||||||| || || | ||||| ||||||||| ||||| || || || || ||||||||
Sbjct: 560682 atctcccttctcaaatataatcatcttatcctcttcatgctttcgagatatgtactggtg 560741
Query: 540 atcagatgtcatgaa 554
|| |||||||||||
Sbjct: 560742 gtctgatgtcatgaa 560756
Score = 101 bits (51), Expect = 2e-018
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||||||||| || ||||| |||||||| |||| ||||| ||||||||||||||||||
Sbjct: 567682 acctttacacgtgagccatgtggaataggagatgagccatcagcattgttaggcagaaaa 567741
Query: 2002 atttcccaaacaccaaactcatt 2024
|| ||||||||||||||||||||
Sbjct: 567742 atctcccaaacaccaaactcatt 567764
Score = 91.7 bits (46), Expect = 2e-015
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 323 cggcggtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgt 382
|||| ||||||||||| || | |||||||||||||| |||||||||||| |||||||| |
Sbjct: 559900 cggcagtgaagtgctctgcagtgtgatggatcctgccaaatccaccaaagagtccagcat 559959
Query: 383 cggagtccaagaccacct 400
| ||||||||||||||||
Sbjct: 559960 ctgagtccaagaccacct 559977
Score = 87.7 bits (44), Expect = 3e-014
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 1504 tgaaccacatccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagacttc 1563
||||| ||||||||||| || | |||||||||||||| ||| |||||||||| |||||
Sbjct: 566160 tgaacaacatccatgagcacaactaaaccaagctcatgagctttatcaatcaatgacttt 566219
Query: 1564 aattcttctggggtaccaaaacgactacttgg 1595
|| ||||||||||| || ||||||||||||||
Sbjct: 566220 aaatcttctggggtcccgaaacgactacttgg 566251
Score = 73.8 bits (37), Expect = 4e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1746 gctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggttg 1802
|||||||||||| ||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct: 567210 gctactcattccaacatgagtttcgtatatccgcaatgactttggtcttttaggttg 567266
Score = 71.9 bits (36), Expect = 2e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 2025 tttgctcatacgatctgcatttggatcccagttgttgaagtcacccaccaatgctgcaga 2084
||||||||| || ||||||||||||| ||| |||||||||||||| || |||||||||||
Sbjct: 568380 tttgctcatgcggtctgcatttggattccaattgttgaagtcacctactaatgctgcaga 568439
Score = 65.9 bits (33), Expect = 1e-007
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 2224 taccgatactcaagatggtacttatagccttgcaacatggggtcaatctggaatattttt 2283
|||||||| |||||||||||||||||||| | | ||| | ||| |||||||||||||||
Sbjct: 569592 taccgatattcaagatggtacttatagccattaagcatagagtccatctggaatattttt 569651
Query: 2284 tgtccatcgcttggtggggggaccactcg 2312
|| ||||| | || ||| ||||| |||||
Sbjct: 569652 tgcccatctcctgttggtgggacaactcg 569680
Score = 61.9 bits (31), Expect = 2e-006
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 2132 gattaaatccaaacttctcataactacgggagaaggcttccaagcctccttcatgttcat 2191
|||||||||||||||||||||||| || || || | ||||| |||||||||| | ||
Sbjct: 568774 gattaaatccaaacttctcataaccgcgagaaaatgtttccagtcctccttcatactgat 568833
Query: 2192 caatgtctgaacggattcttctatagaggct 2222
||||||||||||| | ||| ||||| |||||
Sbjct: 568834 caatgtctgaacgcagtctcctatataggct 568864
Score = 58.0 bits (29), Expect = 3e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 589 tcaaactcttgcataccatgatacctaagatagtctgcatcaccc 633
||||||||| |||| ||| |||||||||||||||| |||||||||
Sbjct: 561292 tcaaactctagcatgccacgatacctaagatagtccgcatcaccc 561336
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 194 bits (98), Expect = 2e-046
Identities = 134/146 (91%)
Strand = Plus / Plus
Query: 881 ccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatcatgacttt 940
|||||||||||||||| || |||||||| ||||| || |||| |||||||||||||||||
Sbjct: 5748354 ccttgtccatcaaccagaatgcaatagttttgtcaccaactagtgcttgatcatgacttt 5748413
Query: 941 cagcataagttacacacttctctaaccacctcctatttgtcagtgtgtgcacaatatcac 1000
|||||||||| |||||||||||| ||||||| || || ||||||||||||||||||||||
Sbjct: 5748414 cagcataagtaacacacttctctgaccaccttctgttagtcagtgtgtgcacaatatcac 5748473
Query: 1001 ccatcttccaagtttcatcactttgc 1026
|||||||||||| |||||||||||||
Sbjct: 5748474 ccatcttccaagattcatcactttgc 5748499
Score = 170 bits (86), Expect = 3e-039
Identities = 134/150 (89%)
Strand = Plus / Plus
Query: 734 caggatgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattg 793
|||||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||
Sbjct: 5747753 caggatgtccgaactcatttcccataaagttaagatagccttctcctcctaaccccattg 5747812
Query: 794 tgataagtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtc 853
|||||||||||||||| ||||| |||||||| |||||||||||| |||| |||| ||||
Sbjct: 5747813 tgataagtctaatcattttatgcaatgctattccacgatcaatgctaggtgttgccggtc 5747872
Query: 854 tatcgagggccatgaaatcatacatatcct 883
| || || ||||| ||||||||||||||||
Sbjct: 5747873 tgtccagagccataaaatcatacatatcct 5747902
Score = 165 bits (83), Expect = 2e-037
Identities = 119/131 (90%)
Strand = Plus / Plus
Query: 1369 acttcccagttcccatagttaaataggcgagaatcccacatccagtgatggccacgtgga 1428
|||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||| |
Sbjct: 5750914 acttcccaattcccatagttgaaaaggcgagaatcccacatccaatgatggccgcgtgaa 5750973
Query: 1429 ccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaacccatccagagtatta 1488
||||| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 5750974 ccactatgaaagtaatgcgtatctgtaccatcaaaaccgttcaacccatctagggtatta 5751033
Query: 1489 cttgacgcatg 1499
||||||||||
Sbjct: 5751034 tttgacgcatg 5751044
Score = 151 bits (76), Expect = 2e-033
Identities = 118/132 (89%)
Strand = Plus / Plus
Query: 1124 cactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagatcattta 1183
|||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 5750432 cacttacatcttcaccgatggttatggcctcaggataaagtccatgaattaaatcattta 5750491
Query: 1184 ccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaatactcattgaagt 1243
|||||||||||||||| |||||||| |||| |||||||| ||||| || ||| || |||
Sbjct: 5750492 ccagcatcaagtaaactactgcatcagcatcagtggcaaatccaaagtattcactgtagt 5750551
Query: 1244 tccccgtaaatg 1255
||||||||||||
Sbjct: 5750552 tccccgtaaatg 5750563
Score = 139 bits (70), Expect = 9e-030
Identities = 109/122 (89%)
Strand = Plus / Plus
Query: 1824 tacctcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcac 1883
|||||||||||||||||||||||| || |||| ||||| |||||||||| |||||||||
Sbjct: 5753874 tacctcttcaggaggatcataatatattccattgtatgggatttctcctgcggcctgcac 5753933
Query: 1884 tgagtacttgatccaggctggaattgaatcctttatccctgatggagtatccattctcac 1943
||||||||||||||||| ||||| ||||||||||| || |||||||| ||||||| |||
Sbjct: 5753934 agagtacttgatccaggcaggaatagaatcctttataccagatggagtttccattcgcac 5753993
Query: 1944 ct 1945
||
Sbjct: 5753994 ct 5753995
Score = 131 bits (66), Expect = 2e-027
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 1257 tacttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccatc 1316
|||||||||||| || |||||||||||||| ||||| ||||| ||||| | |||||||||
Sbjct: 5750705 tacttgtaatccatgatgagtgtacatcattgaggttacaccgtcaaatctgaaaccatc 5750764
Query: 1317 aaacttatattcctcgagccaccatctagcattggagagaagaaatctta 1366
||||||||| ||||||||||||||||| |||||||| || ||||||||||
Sbjct: 5750765 aaacttatactcctcgagccaccatcttgcattggatagtagaaatctta 5750814
Score = 123 bits (62), Expect = 5e-025
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 1026 cttgagaaggtcaatccatttgtcagccacagccatatgcatccgatagtcaaaacctac 1085
|||||| || |||||||||||||||| ||||||||||| | ||||| |||||||| ||
Sbjct: 5748984 cttgaggagttcaatccatttgtcaggaacagccatatgaaggcgataatcaaaaccaac 5749043
Query: 1086 cccaccatcgtgaacaggaagggcaaatgtaggcattccact 1127
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5749044 cccaccatcttgaacaggaagggcaaatgtaggcattccact 5749085
Score = 117 bits (59), Expect = 3e-023
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 1621 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 1680
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 5752542 ccaaagcttccataatatgcatgctcttgaattgccattatttgcactgcattgtatcca 5752601
Query: 1681 agnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgtttatctt 1736
|| |||||||| || || ||||||||||||||| |||| ||||| |||||
Sbjct: 5752602 agctttttgattcttggaagcacctcatccctaaagtttgcatacgtgttgatctt 5752657
Score = 117 bits (59), Expect = 3e-023
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 632 ccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaacttac 691
||||||||||||||||||| ||||| ||||||||||||||||||||||| || || ||||
Sbjct: 5747510 ccaggtcaaatcttcgacggcatttatcataactgttgttattccctgggatgaatttac 5747569
Query: 692 cacttggaagtctttgcggacctcttggaaaatctatccattc 734
|| |||||||| ||| ||| ||||||||||||| ||||||||
Sbjct: 5747570 catttggaagtacttgtggagctcttggaaaatcaatccattc 5747612
Score = 117 bits (59), Expect = 3e-023
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 420 acaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaa 479
|||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 5746563 acaaccaacacggtagtcaaaatagctgttactccaatggaagttgaacacaaataccag 5746622
Query: 480 atctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatatactggtg 539
||||||||| || || | ||||| ||||||||| ||||| || || || || ||||||||
Sbjct: 5746623 atctcccttctcaaatataatcatcttatcctcttcatgctttcgagatatgtactggtg 5746682
Query: 540 atcagatgtcatgaa 554
|| |||||||||||
Sbjct: 5746683 gtctgatgtcatgaa 5746697
Score = 101 bits (51), Expect = 2e-018
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||||||||| || ||||| |||||||| |||| ||||| ||||||||||||||||||
Sbjct: 5754076 acctttacacgtgagccatgtggaataggagatgagccatcagcattgttaggcagaaaa 5754135
Query: 2002 atttcccaaacaccaaactcatt 2024
|| ||||||||||||||||||||
Sbjct: 5754136 atctcccaaacaccaaactcatt 5754158
Score = 91.7 bits (46), Expect = 2e-015
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 323 cggcggtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgt 382
|||| ||||||||||| || | |||||||||||||| |||||||||||| |||||||| |
Sbjct: 5745841 cggcagtgaagtgctctgcagtgtgatggatcctgccaaatccaccaaagagtccagcat 5745900
Query: 383 cggagtccaagaccacct 400
| ||||||||||||||||
Sbjct: 5745901 ctgagtccaagaccacct 5745918
Score = 87.7 bits (44), Expect = 3e-014
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 1504 tgaaccacatccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagacttc 1563
||||| ||||||||||| || | |||||||||||||| ||| |||||||||| |||||
Sbjct: 5752100 tgaacaacatccatgagcacaactaaaccaagctcatgagctttatcaatcaatgacttt 5752159
Query: 1564 aattcttctggggtaccaaaacgactacttgg 1595
|| ||||||||||| || ||||||||||||||
Sbjct: 5752160 aaatcttctggggtcccgaaacgactacttgg 5752191
Score = 73.8 bits (37), Expect = 4e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1746 gctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggttg 1802
|||||||||||| ||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct: 5753150 gctactcattccaacatgagtttcgtatatccgcaatgactttggtcttttaggttg 5753206
Score = 71.9 bits (36), Expect = 2e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 2025 tttgctcatacgatctgcatttggatcccagttgttgaagtcacccaccaatgctgcaga 2084
||||||||| || ||||||||||||| ||| |||||||||||||| || |||||||||||
Sbjct: 5754774 tttgctcatgcggtctgcatttggattccaattgttgaagtcacctactaatgctgcaga 5754833
Score = 65.9 bits (33), Expect = 1e-007
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 2224 taccgatactcaagatggtacttatagccttgcaacatggggtcaatctggaatattttt 2283
|||||||| |||||||||||||||||||| | | ||| | ||| |||||||||||||||
Sbjct: 5755986 taccgatattcaagatggtacttatagccattaagcatagagtccatctggaatattttt 5756045
Query: 2284 tgtccatcgcttggtggggggaccactcg 2312
|| ||||| | || ||| ||||| |||||
Sbjct: 5756046 tgcccatctcctgttggtgggacaactcg 5756074
Score = 61.9 bits (31), Expect = 2e-006
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 2132 gattaaatccaaacttctcataactacgggagaaggcttccaagcctccttcatgttcat 2191
|||||||||||||||||||||||| || || || | ||||| |||||||||| | ||
Sbjct: 5755168 gattaaatccaaacttctcataaccgcgagaaaatgtttccagtcctccttcatactgat 5755227
Query: 2192 caatgtctgaacggattcttctatagaggct 2222
||||||||||||| | ||| ||||| |||||
Sbjct: 5755228 caatgtctgaacgcagtctcctatataggct 5755258
Score = 58.0 bits (29), Expect = 3e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 589 tcaaactcttgcataccatgatacctaagatagtctgcatcaccc 633
||||||||| |||| ||| |||||||||||||||| |||||||||
Sbjct: 5747233 tcaaactctagcatgccacgatacctaagatagtccgcatcaccc 5747277
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 194 bits (98), Expect = 2e-046
Identities = 134/146 (91%)
Strand = Plus / Plus
Query: 881 ccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatcatgacttt 940
|||||||||||||||| || |||||||| ||||| || |||| |||||||||||||||||
Sbjct: 19201418 ccttgtccatcaaccagaatgcaatagttttgtcaccaactagtgcttgatcatgacttt 19201477
Query: 941 cagcataagttacacacttctctaaccacctcctatttgtcagtgtgtgcacaatatcac 1000
|||||||||| |||||||||||| ||||||| || || ||||||||||||||||||||||
Sbjct: 19201478 cagcataagtaacacacttctctgaccaccttctgttagtcagtgtgtgcacaatatcac 19201537
Query: 1001 ccatcttccaagtttcatcactttgc 1026
|||||||||||| |||||||||||||
Sbjct: 19201538 ccatcttccaagattcatcactttgc 19201563
Score = 170 bits (86), Expect = 3e-039
Identities = 134/150 (89%)
Strand = Plus / Plus
Query: 734 caggatgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattg 793
|||||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||
Sbjct: 19200817 caggatgtccgaactcatttcccataaagttaagatagccttctcctcctaaccccattg 19200876
Query: 794 tgataagtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtc 853
|||||||||||||||| ||||| |||||||| |||||||||||| |||| |||| ||||
Sbjct: 19200877 tgataagtctaatcattttatgcaatgctattccacgatcaatgctaggtgttgccggtc 19200936
Query: 854 tatcgagggccatgaaatcatacatatcct 883
| || || ||||| ||||||||||||||||
Sbjct: 19200937 tgtccagagccataaaatcatacatatcct 19200966
Score = 165 bits (83), Expect = 2e-037
Identities = 119/131 (90%)
Strand = Plus / Plus
Query: 1369 acttcccagttcccatagttaaataggcgagaatcccacatccagtgatggccacgtgga 1428
|||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||| |
Sbjct: 19203978 acttcccaattcccatagttgaaaaggcgagaatcccacatccaatgatggccgcgtgaa 19204037
Query: 1429 ccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaacccatccagagtatta 1488
||||| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 19204038 ccactatgaaagtaatgcgtatctgtaccatcaaaaccgttcaacccatctagggtatta 19204097
Query: 1489 cttgacgcatg 1499
||||||||||
Sbjct: 19204098 tttgacgcatg 19204108
Score = 151 bits (76), Expect = 2e-033
Identities = 118/132 (89%)
Strand = Plus / Plus
Query: 1124 cactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagatcattta 1183
|||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 19203496 cacttacatcttcaccgatggttatggcctcaggataaagtccatgaattaaatcattta 19203555
Query: 1184 ccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaatactcattgaagt 1243
|||||||||||||||| |||||||| |||| |||||||| ||||| || ||| || |||
Sbjct: 19203556 ccagcatcaagtaaactactgcatcagcatcagtggcaaatccaaagtattcactgtagt 19203615
Query: 1244 tccccgtaaatg 1255
||||||||||||
Sbjct: 19203616 tccccgtaaatg 19203627
Score = 139 bits (70), Expect = 9e-030
Identities = 109/122 (89%)
Strand = Plus / Plus
Query: 1824 tacctcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcac 1883
|||||||||||||||||||||||| || |||| ||||| |||||||||| |||||||||
Sbjct: 19206938 tacctcttcaggaggatcataatatattccattgtatgggatttctcctgcggcctgcac 19206997
Query: 1884 tgagtacttgatccaggctggaattgaatcctttatccctgatggagtatccattctcac 1943
||||||||||||||||| ||||| ||||||||||| || |||||||| ||||||| |||
Sbjct: 19206998 agagtacttgatccaggcaggaatagaatcctttataccagatggagtttccattcgcac 19207057
Query: 1944 ct 1945
||
Sbjct: 19207058 ct 19207059
Score = 131 bits (66), Expect = 2e-027
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 1257 tacttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccatc 1316
|||||||||||| || |||||||||||||| ||||| ||||| ||||| | |||||||||
Sbjct: 19203769 tacttgtaatccatgatgagtgtacatcattgaggttacaccgtcaaatctgaaaccatc 19203828
Query: 1317 aaacttatattcctcgagccaccatctagcattggagagaagaaatctta 1366
||||||||| ||||||||||||||||| |||||||| || ||||||||||
Sbjct: 19203829 aaacttatactcctcgagccaccatcttgcattggatagtagaaatctta 19203878
Score = 123 bits (62), Expect = 5e-025
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 1026 cttgagaaggtcaatccatttgtcagccacagccatatgcatccgatagtcaaaacctac 1085
|||||| || |||||||||||||||| ||||||||||| | ||||| |||||||| ||
Sbjct: 19202048 cttgaggagttcaatccatttgtcaggaacagccatatgaaggcgataatcaaaaccaac 19202107
Query: 1086 cccaccatcgtgaacaggaagggcaaatgtaggcattccact 1127
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 19202108 cccaccatcttgaacaggaagggcaaatgtaggcattccact 19202149
Score = 117 bits (59), Expect = 3e-023
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 1621 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 1680
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 19205606 ccaaagcttccataatatgcatgctcttgaattgccattatttgcactgcattgtatcca 19205665
Query: 1681 agnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgtttatctt 1736
|| |||||||| || || ||||||||||||||| |||| ||||| |||||
Sbjct: 19205666 agctttttgattcttggaagcacctcatccctaaagtttgcatacgtgttgatctt 19205721
Score = 117 bits (59), Expect = 3e-023
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 632 ccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaacttac 691
||||||||||||||||||| ||||| ||||||||||||||||||||||| || || ||||
Sbjct: 19200574 ccaggtcaaatcttcgacggcatttatcataactgttgttattccctgggatgaatttac 19200633
Query: 692 cacttggaagtctttgcggacctcttggaaaatctatccattc 734
|| |||||||| ||| ||| ||||||||||||| ||||||||
Sbjct: 19200634 catttggaagtacttgtggagctcttggaaaatcaatccattc 19200676
Score = 117 bits (59), Expect = 3e-023
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 420 acaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaa 479
|||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 19199627 acaaccaacacggtagtcaaaatagctgttactccaatggaagttgaacacaaataccag 19199686
Query: 480 atctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatatactggtg 539
||||||||| || || | ||||| ||||||||| ||||| || || || || ||||||||
Sbjct: 19199687 atctcccttctcaaatataatcatcttatcctcttcatgctttcgagatatgtactggtg 19199746
Query: 540 atcagatgtcatgaa 554
|| |||||||||||
Sbjct: 19199747 gtctgatgtcatgaa 19199761
Score = 101 bits (51), Expect = 2e-018
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||||||||| || ||||| |||||||| |||| ||||| ||||||||||||||||||
Sbjct: 19207140 acctttacacgtgagccatgtggaataggagatgagccatcagcattgttaggcagaaaa 19207199
Query: 2002 atttcccaaacaccaaactcatt 2024
|| ||||||||||||||||||||
Sbjct: 19207200 atctcccaaacaccaaactcatt 19207222
Score = 91.7 bits (46), Expect = 2e-015
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 323 cggcggtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgt 382
|||| ||||||||||| || | |||||||||||||| |||||||||||| |||||||| |
Sbjct: 19198905 cggcagtgaagtgctctgcagtgtgatggatcctgccaaatccaccaaagagtccagcat 19198964
Query: 383 cggagtccaagaccacct 400
| ||||||||||||||||
Sbjct: 19198965 ctgagtccaagaccacct 19198982
Score = 87.7 bits (44), Expect = 3e-014
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 1504 tgaaccacatccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagacttc 1563
||||| ||||||||||| || | |||||||||||||| ||| |||||||||| |||||
Sbjct: 19205164 tgaacaacatccatgagcacaactaaaccaagctcatgagctttatcaatcaatgacttt 19205223
Query: 1564 aattcttctggggtaccaaaacgactacttgg 1595
|| ||||||||||| || ||||||||||||||
Sbjct: 19205224 aaatcttctggggtcccgaaacgactacttgg 19205255
Score = 73.8 bits (37), Expect = 4e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1746 gctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggttg 1802
|||||||||||| ||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct: 19206214 gctactcattccaacatgagtttcgtatatccgcaatgactttggtcttttaggttg 19206270
Score = 71.9 bits (36), Expect = 2e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 2025 tttgctcatacgatctgcatttggatcccagttgttgaagtcacccaccaatgctgcaga 2084
||||||||| || ||||||||||||| ||| |||||||||||||| || |||||||||||
Sbjct: 19207838 tttgctcatgcggtctgcatttggattccaattgttgaagtcacctactaatgctgcaga 19207897
Score = 65.9 bits (33), Expect = 1e-007
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 2224 taccgatactcaagatggtacttatagccttgcaacatggggtcaatctggaatattttt 2283
|||||||| |||||||||||||||||||| | | ||| | ||| |||||||||||||||
Sbjct: 19209050 taccgatattcaagatggtacttatagccattaagcatagagtccatctggaatattttt 19209109
Query: 2284 tgtccatcgcttggtggggggaccactcg 2312
|| ||||| | || ||| ||||| |||||
Sbjct: 19209110 tgcccatctcctgttggtgggacaactcg 19209138
Score = 61.9 bits (31), Expect = 2e-006
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 2132 gattaaatccaaacttctcataactacgggagaaggcttccaagcctccttcatgttcat 2191
|||||||||||||||||||||||| || || || | ||||| |||||||||| | ||
Sbjct: 19208232 gattaaatccaaacttctcataaccgcgagaaaatgtttccagtcctccttcatactgat 19208291
Query: 2192 caatgtctgaacggattcttctatagaggct 2222
||||||||||||| | ||| ||||| |||||
Sbjct: 19208292 caatgtctgaacgcagtctcctatataggct 19208322
Score = 58.0 bits (29), Expect = 3e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 589 tcaaactcttgcataccatgatacctaagatagtctgcatcaccc 633
||||||||| |||| ||| |||||||||||||||| |||||||||
Sbjct: 19200297 tcaaactctagcatgccacgatacctaagatagtccgcatcaccc 19200341
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 194 bits (98), Expect = 2e-046
Identities = 134/146 (91%)
Strand = Plus / Plus
Query: 881 ccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatcatgacttt 940
|||||||||||||||| || |||||||| ||||| || |||| |||||||||||||||||
Sbjct: 19378171 ccttgtccatcaaccagaatgcaatagttttgtcaccaactagtgcttgatcatgacttt 19378230
Query: 941 cagcataagttacacacttctctaaccacctcctatttgtcagtgtgtgcacaatatcac 1000
|||||||||| |||||||||||| ||||||| || || ||||||||||||||||||||||
Sbjct: 19378231 cagcataagtaacacacttctctgaccaccttctgttagtcagtgtgtgcacaatatcac 19378290
Query: 1001 ccatcttccaagtttcatcactttgc 1026
|||||||||||| |||||||||||||
Sbjct: 19378291 ccatcttccaagattcatcactttgc 19378316
Score = 170 bits (86), Expect = 3e-039
Identities = 134/150 (89%)
Strand = Plus / Plus
Query: 734 caggatgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattg 793
|||||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||
Sbjct: 19377570 caggatgtccgaactcatttcccataaagttaagatagccttctcctcctaaccccattg 19377629
Query: 794 tgataagtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtc 853
|||||||||||||||| ||||| |||||||| |||||||||||| |||| |||| ||||
Sbjct: 19377630 tgataagtctaatcattttatgcaatgctattccacgatcaatgctaggtgttgccggtc 19377689
Query: 854 tatcgagggccatgaaatcatacatatcct 883
| || || ||||| ||||||||||||||||
Sbjct: 19377690 tgtccagagccataaaatcatacatatcct 19377719
Score = 165 bits (83), Expect = 2e-037
Identities = 119/131 (90%)
Strand = Plus / Plus
Query: 1369 acttcccagttcccatagttaaataggcgagaatcccacatccagtgatggccacgtgga 1428
|||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||| |
Sbjct: 19380732 acttcccaattcccatagttgaaaaggcgagaatcccacatccaatgatggccgcgtgaa 19380791
Query: 1429 ccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaacccatccagagtatta 1488
||||| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 19380792 ccactatgaaagtaatgcgtatctgtaccatcaaaaccgttcaacccatctagggtatta 19380851
Query: 1489 cttgacgcatg 1499
||||||||||
Sbjct: 19380852 tttgacgcatg 19380862
Score = 151 bits (76), Expect = 2e-033
Identities = 118/132 (89%)
Strand = Plus / Plus
Query: 1124 cactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagatcattta 1183
|||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 19380250 cacttacatcttcaccgatggttatggcctcaggataaagtccatgaattaaatcattta 19380309
Query: 1184 ccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaatactcattgaagt 1243
|||||||||||||||| |||||||| |||| |||||||| ||||| || ||| || |||
Sbjct: 19380310 ccagcatcaagtaaactactgcatcagcatcagtggcaaatccaaagtattcactgtagt 19380369
Query: 1244 tccccgtaaatg 1255
||||||||||||
Sbjct: 19380370 tccccgtaaatg 19380381
Score = 139 bits (70), Expect = 9e-030
Identities = 109/122 (89%)
Strand = Plus / Plus
Query: 1824 tacctcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcac 1883
|||||||||||||||||||||||| || |||| ||||| |||||||||| |||||||||
Sbjct: 19383238 tacctcttcaggaggatcataatatattccattgtatgggatttctcctgcggcctgcac 19383297
Query: 1884 tgagtacttgatccaggctggaattgaatcctttatccctgatggagtatccattctcac 1943
||||||||||||||||| ||||| ||||||||||| || |||||||| ||||||| |||
Sbjct: 19383298 agagtacttgatccaggcaggaatagaatcctttataccagatggagtttccattcgcac 19383357
Query: 1944 ct 1945
||
Sbjct: 19383358 ct 19383359
Score = 131 bits (66), Expect = 2e-027
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 1257 tacttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccatc 1316
|||||||||||| || |||||||||||||| ||||| ||||| ||||| | |||||||||
Sbjct: 19380523 tacttgtaatccatgatgagtgtacatcattgaggttacaccgtcaaatctgaaaccatc 19380582
Query: 1317 aaacttatattcctcgagccaccatctagcattggagagaagaaatctta 1366
||||||||| ||||||||||||||||| |||||||| || ||||||||||
Sbjct: 19380583 aaacttatactcctcgagccaccatcttgcattggatagtagaaatctta 19380632
Score = 123 bits (62), Expect = 5e-025
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 1026 cttgagaaggtcaatccatttgtcagccacagccatatgcatccgatagtcaaaacctac 1085
|||||| || |||||||||||||||| ||||||||||| | ||||| |||||||| ||
Sbjct: 19378802 cttgaggagttcaatccatttgtcaggaacagccatatgaaggcgataatcaaaaccaac 19378861
Query: 1086 cccaccatcgtgaacaggaagggcaaatgtaggcattccact 1127
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 19378862 cccaccatcttgaacaggaagggcaaatgtaggcattccact 19378903
Score = 117 bits (59), Expect = 3e-023
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 1621 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 1680
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 19382360 ccaaagcttccataatatgcatgctcttgaattgccattatttgcactgcattgtatcca 19382419
Query: 1681 agnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgtttatctt 1736
|| |||||||| || || ||||||||||||||| |||| ||||| |||||
Sbjct: 19382420 agctttttgattcttggaagcacctcatccctaaagtttgcatacgtgttgatctt 19382475
Score = 117 bits (59), Expect = 3e-023
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 632 ccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaacttac 691
||||||||||||||||||| ||||| ||||||||||||||||||||||| || || ||||
Sbjct: 19377327 ccaggtcaaatcttcgacggcatttatcataactgttgttattccctgggatgaatttac 19377386
Query: 692 cacttggaagtctttgcggacctcttggaaaatctatccattc 734
|| |||||||| ||| ||| ||||||||||||| ||||||||
Sbjct: 19377387 catttggaagtacttgtggagctcttggaaaatcaatccattc 19377429
Score = 117 bits (59), Expect = 3e-023
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 420 acaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaa 479
|||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 19376380 acaaccaacacggtagtcaaaatagctgttactccaatggaagttgaacacaaataccag 19376439
Query: 480 atctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatatactggtg 539
||||||||| || || | ||||| ||||||||| ||||| || || || || ||||||||
Sbjct: 19376440 atctcccttctcaaatataatcatcttatcctcttcatgctttcgagatatgtactggtg 19376499
Query: 540 atcagatgtcatgaa 554
|| |||||||||||
Sbjct: 19376500 gtctgatgtcatgaa 19376514
Score = 101 bits (51), Expect = 2e-018
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||||||||| || ||||| |||||||| |||| ||||| ||||||||||||||||||
Sbjct: 19383440 acctttacacgtgagccatgtggaataggagatgagccatcagcattgttaggcagaaaa 19383499
Query: 2002 atttcccaaacaccaaactcatt 2024
|| ||||||||||||||||||||
Sbjct: 19383500 atctcccaaacaccaaactcatt 19383522
Score = 91.7 bits (46), Expect = 2e-015
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 323 cggcggtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgt 382
|||| ||||||||||| || | |||||||||||||| |||||||||||| |||||||| |
Sbjct: 19375658 cggcagtgaagtgctctgcagtgtgatggatcctgccaaatccaccaaagagtccagcat 19375717
Query: 383 cggagtccaagaccacct 400
| ||||||||||||||||
Sbjct: 19375718 ctgagtccaagaccacct 19375735
Score = 87.7 bits (44), Expect = 3e-014
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 1504 tgaaccacatccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagacttc 1563
||||| ||||||||||| || | |||||||||||||| ||| |||||||||| |||||
Sbjct: 19381918 tgaacaacatccatgagcacaactaaaccaagctcatgagctttatcaatcaatgacttt 19381977
Query: 1564 aattcttctggggtaccaaaacgactacttgg 1595
|| ||||||||||| || ||||||||||||||
Sbjct: 19381978 aaatcttctggggtcccgaaacgactacttgg 19382009
Score = 73.8 bits (37), Expect = 4e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1746 gctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggttg 1802
|||||||||||| ||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct: 19382968 gctactcattccaacatgagtttcgtatatccgcaatgactttggtcttttaggttg 19383024
Score = 71.9 bits (36), Expect = 2e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 2025 tttgctcatacgatctgcatttggatcccagttgttgaagtcacccaccaatgctgcaga 2084
||||||||| || ||||||||||||| ||| |||||||||||||| || |||||||||||
Sbjct: 19384138 tttgctcatgcggtctgcatttggattccaattgttgaagtcacctactaatgctgcaga 19384197
Score = 65.9 bits (33), Expect = 1e-007
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 2224 taccgatactcaagatggtacttatagccttgcaacatggggtcaatctggaatattttt 2283
|||||||| |||||||||||||||||||| | | ||| | ||| |||||||||||||||
Sbjct: 19385350 taccgatattcaagatggtacttatagccattaagcatagagtccatctggaatattttt 19385409
Query: 2284 tgtccatcgcttggtggggggaccactcg 2312
|| ||||| | || ||| ||||| |||||
Sbjct: 19385410 tgcccatctcctgttggtgggacaactcg 19385438
Score = 61.9 bits (31), Expect = 2e-006
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 2132 gattaaatccaaacttctcataactacgggagaaggcttccaagcctccttcatgttcat 2191
|||||||||||||||||||||||| || || || | ||||| |||||||||| | ||
Sbjct: 19384532 gattaaatccaaacttctcataaccgcgagaaaatgtttccagtcctccttcatactgat 19384591
Query: 2192 caatgtctgaacggattcttctatagaggct 2222
||||||||||||| | ||| ||||| |||||
Sbjct: 19384592 caatgtctgaacgcagtctcctatataggct 19384622
Score = 58.0 bits (29), Expect = 3e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 589 tcaaactcttgcataccatgatacctaagatagtctgcatcaccc 633
||||||||| |||| ||| |||||||||||||||| |||||||||
Sbjct: 19377050 tcaaactctagcatgccacgatacctaagatagtccgcatcaccc 19377094
>gb|AACV01009691.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009691, whole
genome shotgun sequence
Length = 45807
Score = 178 bits (90), Expect = 1e-041
Identities = 135/150 (90%)
Strand = Plus / Minus
Query: 734 caggatgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattg 793
||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||| |
Sbjct: 31124 caggatgcccaaactcatttcccatgaaattaagatagccttcgcctcctaagcccatgg 31065
Query: 794 tgataagtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtc 853
||| ||| |||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 31064 tgacaagcctaatcattttatgtaatgctatcccacgatcaatgcgaggtgttgaaggtc 31005
Query: 854 tatcgagggccatgaaatcatacatatcct 883
| || || ||||| ||||||||||||||||
Sbjct: 31004 tgtctagagccataaaatcatacatatcct 30975
Score = 139 bits (70), Expect = 9e-030
Identities = 127/146 (86%)
Strand = Plus / Minus
Query: 881 ccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatcatgacttt 940
|||| ||||||||||| || |||||||||||||| || |||| |||||| ||||||||||
Sbjct: 30287 ccttatccatcaaccagaatgcaatagtcttgtcaccaactagtgcttggtcatgacttt 30228
Query: 941 cagcataagttacacacttctctaaccacctcctatttgtcagtgtgtgcacaatatcac 1000
| |||||||| |||||||||||| ||||||| ||||| || || |||||||| |||||||
Sbjct: 30227 ctgcataagtaacacacttctctgaccaccttctattcgttagggtgtgcacgatatcac 30168
Query: 1001 ccatcttccaagtttcatcactttgc 1026
|||| |||||| ||| |||||||||
Sbjct: 30167 ccattttccaatattcgtcactttgc 30142
Score = 139 bits (70), Expect = 9e-030
Identities = 118/134 (88%)
Strand = Plus / Minus
Query: 1369 acttcccagttcccatagttaaataggcgagaatcccacatccagtgatggccacgtgga 1428
|||||||| |||||||||| || |||||||||||||||||||||||||| || |||||
Sbjct: 28864 acttcccaactcccatagttgaacaggcgagaatcccacatccagtgatgaccccgtggt 28805
Query: 1429 ccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaacccatccagagtatta 1488
|||| || |||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 28804 ccaccatggaagtaatgtgtatcagtaccatcaaaaccattcaaaccatccagggtattg 28745
Query: 1489 cttgacgcatgact 1502
|||| ||||||||
Sbjct: 28744 tttgatgcatgact 28731
Score = 137 bits (69), Expect = 4e-029
Identities = 99/109 (90%)
Strand = Plus / Minus
Query: 1124 cactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagatcattta 1183
|||| |||||||||||||||| |||||||||||||||||| |||||||||||||| || |
Sbjct: 29410 cacttacatcttcaccaatggctacagcctcaggataaagcccatgaattagatcgttca 29351
Query: 1184 ccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaata 1232
|||||||||||||||| |||||||| ||||| || ||||| ||||||||
Sbjct: 29350 ccagcatcaagtaaactactgcatcaacatcagtagcaaatccaaaata 29302
Score = 115 bits (58), Expect = 1e-022
Identities = 106/122 (86%)
Strand = Plus / Minus
Query: 433 tagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaaatctcccttttcg 492
|||||||||||||| || | ||||||||||||||||| |||||||||||||| | |||
Sbjct: 32234 tagtcaaaatagctattactccagtggaagttgaacacgaataccaaatctcctctctcg 32175
Query: 493 aacacaatcaccttatcctcctcatgtttccgggaaatatactggtgatcagatgtcatg 552
|| | ||||||||||||||||| ||||| || || ||||||||||| ||||||||||||
Sbjct: 32174 aagatgatcaccttatcctcctcgtgtttgcgcgatatatactggtgctcagatgtcatg 32115
Query: 553 aa 554
||
Sbjct: 32114 aa 32113
Score = 105 bits (53), Expect = 1e-019
Identities = 68/73 (93%)
Strand = Plus / Minus
Query: 557 catatttttgctcaagatgttgcattgcctgatcaaactcttgcataccatgatacctaa 616
||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 31619 catatttttcctcaagatgctgcatggcctgatcaaactcttgcataccatgatatctaa 31560
Query: 617 gatagtctgcatc 629
|||| ||||||||
Sbjct: 31559 gataatctgcatc 31547
Score = 91.7 bits (46), Expect = 2e-015
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 1621 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 1680
||||||||| | ||||| |||||||| |||||||||||||| || || |||||||| |||
Sbjct: 28180 ccaaagcttgcgtaataagagtgctcctggattgccattatctgtacagcattgtaccca 28121
Query: 1681 agnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgtttatcttcggt 1740
|| |||||||| || || ||||||||||| || ||||||||||||||||||||
Sbjct: 28120 agctttttaattcttggtagcacctcatccctaaaattagcatatgtgtttatcttcggt 28061
Query: 1741 tcc 1743
|||
Sbjct: 28060 tcc 28058
Score = 77.8 bits (39), Expect = 3e-011
Identities = 96/115 (83%)
Strand = Plus / Minus
Query: 1256 ttacttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccat 1315
|||| ||||| || || ||||| ||||||||||||||||| |||||||| || || ||||
Sbjct: 29067 ttacctgtaaaccatgatgagtatacatcatggaggtcaccccatcaaatcgaaacccat 29008
Query: 1316 caaacttatattcctcgagccaccatctagcattggagagaagaaatcttaaaac 1370
||||||| ||||| || |||||||| || ||||| || || | | ||||||||||
Sbjct: 29007 caaacttgtattcttcaagccaccaccttgcattcgacagtaaatatcttaaaac 28953
Score = 77.8 bits (39), Expect = 3e-011
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 1512 atccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagacttcaattcttc 1571
|||||| || || |||||||||||||| || ||| ||||||||| ||| ||||| |||||
Sbjct: 28437 atccataagtacaagcaaaccaagctcgtgagctttatcaatcagagatttcaagtcttc 28378
Query: 1572 tggggtaccaaaacgactacttggcgc 1598
|||||| || ||||| |||||||||||
Sbjct: 28377 tggggttccgaaacggctacttggcgc 28351
Score = 73.8 bits (37), Expect = 4e-010
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 1742 ccgggctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggtt 1801
|||||||||||||||| | ||||| |||||||||||||| || ||||||||||||||||
Sbjct: 27425 ccgggctactcattccaatatgtgattcatatatccgcagcgaatttggtcgtttaggtt 27366
Query: 1802 g 1802
|
Sbjct: 27365 g 27365
Score = 71.9 bits (36), Expect = 2e-009
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 1026 cttgagaaggtcaatccatttgtcagccacagccatatgcatccgatagtcaaaacctac 1085
|||||| || || ||||||||||| | ||||||||||||| |||||||||||||| ||
Sbjct: 29870 cttgaggagttcgatccatttgtccggtacagccatatgcaaacgatagtcaaaaccaac 29811
Query: 1086 cccaccatcgtgaacaggaa 1105
|||||||| ||||||||||
Sbjct: 29810 accaccatcttgaacaggaa 29791
Score = 67.9 bits (34), Expect = 3e-008
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 1828 tcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcactgag 1887
|||||||| ||||||||||| || || | || |||||||| ||||| |||||||| |
Sbjct: 27154 tcttcaggtggatcataatatataccgttgtacggtatttcacctggagcctgcacagca 27095
Query: 1888 tacttgatccaggctggaattgaatcctttatccctgatggagtatccat 1937
|||| |||||||| |||||||||||||||| || ||||| ||||||||
Sbjct: 27094 aacttaatccaggcaggaattgaatcctttacgccagatggtgtatccat 27045
Score = 61.9 bits (31), Expect = 2e-006
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||||||||| || ||||||||||||| | | ||||| |||||||||||||| ||
Sbjct: 26945 acctttacacgtgagccatgaggaatagcaggggatccatcagcattgttaggcagggaa 26886
Query: 2002 atttcccaaacaccaaactcatt 2024
|| |||||||||||| |||||||
Sbjct: 26885 atctcccaaacaccatactcatt 26863
Score = 58.0 bits (29), Expect = 3e-005
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 634 aggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaacttacca 693
||||||||||| ||||| ||||| ||| |||||| ||| || ||||| | | | |||
Sbjct: 31353 aggtcaaatctacgacggcatttatcaaaactgtagttgtttcctgggaggaccgagcca 31294
Query: 694 cttggaagtctttgcggacctcttggaaaatctatccattc 734
||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 31293 tttggaagactttgcgggcctcttgggaaatctatccattc 31253
Score = 56.0 bits (28), Expect = 1e-004
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 2037 atctgcatttggatcccagttgttgaagtcacccaccaatgctgcaga 2084
|||||||||||| | ||| |||||||||||||| || |||||||||||
Sbjct: 26267 atctgcatttgggttccaattgttgaagtcacctactaatgctgcaga 26220
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 178 bits (90), Expect = 1e-041
Identities = 135/150 (90%)
Strand = Plus / Plus
Query: 734 caggatgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattg 793
||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||| |
Sbjct: 10011509 caggatgcccaaactcatttcccatgaaattaagatagccttcgcctcctaagcccatgg 10011568
Query: 794 tgataagtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtc 853
||| ||| |||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 10011569 tgacaagcctaatcattttatgtaatgctatcccacgatcaatgcgaggtgttgaaggtc 10011628
Query: 854 tatcgagggccatgaaatcatacatatcct 883
| || || ||||| ||||||||||||||||
Sbjct: 10011629 tgtctagagccataaaatcatacatatcct 10011658
Score = 139 bits (70), Expect = 9e-030
Identities = 118/134 (88%)
Strand = Plus / Plus
Query: 1369 acttcccagttcccatagttaaataggcgagaatcccacatccagtgatggccacgtgga 1428
|||||||| |||||||||| || |||||||||||||||||||||||||| || |||||
Sbjct: 10013769 acttcccaactcccatagttgaacaggcgagaatcccacatccagtgatgaccccgtggt 10013828
Query: 1429 ccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaacccatccagagtatta 1488
|||| || |||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 10013829 ccaccatggaagtaatgtgtatcagtaccatcaaaaccattcaaaccatccagggtattg 10013888
Query: 1489 cttgacgcatgact 1502
|||| ||||||||
Sbjct: 10013889 tttgatgcatgact 10013902
Score = 139 bits (70), Expect = 9e-030
Identities = 127/146 (86%)
Strand = Plus / Plus
Query: 881 ccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatcatgacttt 940
|||| ||||||||||| || |||||||||||||| || |||| |||||| ||||||||||
Sbjct: 10012346 ccttatccatcaaccagaatgcaatagtcttgtcaccaactagtgcttggtcatgacttt 10012405
Query: 941 cagcataagttacacacttctctaaccacctcctatttgtcagtgtgtgcacaatatcac 1000
| |||||||| |||||||||||| ||||||| ||||| || || |||||||| |||||||
Sbjct: 10012406 ctgcataagtaacacacttctctgaccaccttctattcgttagggtgtgcacgatatcac 10012465
Query: 1001 ccatcttccaagtttcatcactttgc 1026
|||| |||||| ||| |||||||||
Sbjct: 10012466 ccattttccaatattcgtcactttgc 10012491
Score = 137 bits (69), Expect = 4e-029
Identities = 99/109 (90%)
Strand = Plus / Plus
Query: 1124 cactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagatcattta 1183
|||| |||||||||||||||| |||||||||||||||||| |||||||||||||| || |
Sbjct: 10013223 cacttacatcttcaccaatggctacagcctcaggataaagcccatgaattagatcgttca 10013282
Query: 1184 ccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaata 1232
|||||||||||||||| |||||||| ||||| || ||||| ||||||||
Sbjct: 10013283 ccagcatcaagtaaactactgcatcaacatcagtagcaaatccaaaata 10013331
Score = 115 bits (58), Expect = 1e-022
Identities = 106/122 (86%)
Strand = Plus / Plus
Query: 433 tagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaaatctcccttttcg 492
|||||||||||||| || | ||||||||||||||||| |||||||||||||| | |||
Sbjct: 10010399 tagtcaaaatagctattactccagtggaagttgaacacgaataccaaatctcctctctcg 10010458
Query: 493 aacacaatcaccttatcctcctcatgtttccgggaaatatactggtgatcagatgtcatg 552
|| | ||||||||||||||||| ||||| || || ||||||||||| ||||||||||||
Sbjct: 10010459 aagatgatcaccttatcctcctcgtgtttgcgcgatatatactggtgctcagatgtcatg 10010518
Query: 553 aa 554
||
Sbjct: 10010519 aa 10010520
Score = 105 bits (53), Expect = 1e-019
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 557 catatttttgctcaagatgttgcattgcctgatcaaactcttgcataccatgatacctaa 616
||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 10011014 catatttttcctcaagatgctgcatggcctgatcaaactcttgcataccatgatatctaa 10011073
Query: 617 gatagtctgcatc 629
|||| ||||||||
Sbjct: 10011074 gataatctgcatc 10011086
Score = 91.7 bits (46), Expect = 2e-015
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 1621 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 1680
||||||||| | ||||| |||||||| |||||||||||||| || || |||||||| |||
Sbjct: 10014453 ccaaagcttgcgtaataagagtgctcctggattgccattatctgtacagcattgtaccca 10014512
Query: 1681 agnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgtttatcttcggt 1740
|| |||||||| || || ||||||||||| || ||||||||||||||||||||
Sbjct: 10014513 agctttttaattcttggtagcacctcatccctaaaattagcatatgtgtttatcttcggt 10014572
Query: 1741 tcc 1743
|||
Sbjct: 10014573 tcc 10014575
Score = 77.8 bits (39), Expect = 3e-011
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 1512 atccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagacttcaattcttc 1571
|||||| || || |||||||||||||| || ||| ||||||||| ||| ||||| |||||
Sbjct: 10014196 atccataagtacaagcaaaccaagctcgtgagctttatcaatcagagatttcaagtcttc 10014255
Query: 1572 tggggtaccaaaacgactacttggcgc 1598
|||||| || ||||| |||||||||||
Sbjct: 10014256 tggggttccgaaacggctacttggcgc 10014282
Score = 77.8 bits (39), Expect = 3e-011
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 1256 ttacttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccat 1315
|||| ||||| || || ||||| ||||||||||||||||| |||||||| || || ||||
Sbjct: 10013566 ttacctgtaaaccatgatgagtatacatcatggaggtcaccccatcaaatcgaaacccat 10013625
Query: 1316 caaacttatattcctcgagccaccatctagcattggagagaagaaatcttaaaac 1370
||||||| ||||| || |||||||| || ||||| || || | | ||||||||||
Sbjct: 10013626 caaacttgtattcttcaagccaccaccttgcattcgacagtaaatatcttaaaac 10013680
Score = 73.8 bits (37), Expect = 4e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 1742 ccgggctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggtt 1801
|||||||||||||||| | ||||| |||||||||||||| || ||||||||||||||||
Sbjct: 10015208 ccgggctactcattccaatatgtgattcatatatccgcagcgaatttggtcgtttaggtt 10015267
Query: 1802 g 1802
|
Sbjct: 10015268 g 10015268
Score = 71.9 bits (36), Expect = 2e-009
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 1026 cttgagaaggtcaatccatttgtcagccacagccatatgcatccgatagtcaaaacctac 1085
|||||| || || ||||||||||| | ||||||||||||| |||||||||||||| ||
Sbjct: 10012763 cttgaggagttcgatccatttgtccggtacagccatatgcaaacgatagtcaaaaccaac 10012822
Query: 1086 cccaccatcgtgaacaggaa 1105
|||||||| ||||||||||
Sbjct: 10012823 accaccatcttgaacaggaa 10012842
Score = 67.9 bits (34), Expect = 3e-008
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 1828 tcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcactgag 1887
|||||||| ||||||||||| || || | || |||||||| ||||| |||||||| |
Sbjct: 10015479 tcttcaggtggatcataatatataccgttgtacggtatttcacctggagcctgcacagca 10015538
Query: 1888 tacttgatccaggctggaattgaatcctttatccctgatggagtatccat 1937
|||| |||||||| |||||||||||||||| || ||||| ||||||||
Sbjct: 10015539 aacttaatccaggcaggaattgaatcctttacgccagatggtgtatccat 10015588
Score = 61.9 bits (31), Expect = 2e-006
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||||||||| || ||||||||||||| | | ||||| |||||||||||||| ||
Sbjct: 10015688 acctttacacgtgagccatgaggaatagcaggggatccatcagcattgttaggcagggaa 10015747
Query: 2002 atttcccaaacaccaaactcatt 2024
|| |||||||||||| |||||||
Sbjct: 10015748 atctcccaaacaccatactcatt 10015770
Score = 58.0 bits (29), Expect = 3e-005
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 634 aggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaacttacca 693
||||||||||| ||||| ||||| ||| |||||| ||| || ||||| | | | |||
Sbjct: 10011280 aggtcaaatctacgacggcatttatcaaaactgtagttgtttcctgggaggaccgagcca 10011339
Query: 694 cttggaagtctttgcggacctcttggaaaatctatccattc 734
||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 10011340 tttggaagactttgcgggcctcttgggaaatctatccattc 10011380
Score = 56.0 bits (28), Expect = 1e-004
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 2037 atctgcatttggatcccagttgttgaagtcacccaccaatgctgcaga 2084
|||||||||||| | ||| |||||||||||||| || |||||||||||
Sbjct: 10016366 atctgcatttgggttccaattgttgaagtcacctactaatgctgcaga 10016413
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 178 bits (90), Expect = 1e-041
Identities = 135/150 (90%)
Strand = Plus / Plus
Query: 734 caggatgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattg 793
||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||| |
Sbjct: 17358871 caggatgcccaaactcatttcccatgaaattaagatagccttcgcctcctaagcccatgg 17358930
Query: 794 tgataagtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtc 853
||| ||| |||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 17358931 tgacaagcctaatcattttatgtaatgctatcccacgatcaatgcgaggtgttgaaggtc 17358990
Query: 854 tatcgagggccatgaaatcatacatatcct 883
| || || ||||| ||||||||||||||||
Sbjct: 17358991 tgtctagagccataaaatcatacatatcct 17359020
Score = 139 bits (70), Expect = 9e-030
Identities = 118/134 (88%)
Strand = Plus / Plus
Query: 1369 acttcccagttcccatagttaaataggcgagaatcccacatccagtgatggccacgtgga 1428
|||||||| |||||||||| || |||||||||||||||||||||||||| || |||||
Sbjct: 17361131 acttcccaactcccatagttgaacaggcgagaatcccacatccagtgatgaccccgtggt 17361190
Query: 1429 ccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaacccatccagagtatta 1488
|||| || |||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 17361191 ccaccatggaagtaatgtgtatcagtaccatcaaaaccattcaaaccatccagggtattg 17361250
Query: 1489 cttgacgcatgact 1502
|||| ||||||||
Sbjct: 17361251 tttgatgcatgact 17361264
Score = 139 bits (70), Expect = 9e-030
Identities = 127/146 (86%)
Strand = Plus / Plus
Query: 881 ccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatcatgacttt 940
|||| ||||||||||| || |||||||||||||| || |||| |||||| ||||||||||
Sbjct: 17359708 ccttatccatcaaccagaatgcaatagtcttgtcaccaactagtgcttggtcatgacttt 17359767
Query: 941 cagcataagttacacacttctctaaccacctcctatttgtcagtgtgtgcacaatatcac 1000
| |||||||| |||||||||||| ||||||| ||||| || || |||||||| |||||||
Sbjct: 17359768 ctgcataagtaacacacttctctgaccaccttctattcgttagggtgtgcacgatatcac 17359827
Query: 1001 ccatcttccaagtttcatcactttgc 1026
|||| |||||| ||| |||||||||
Sbjct: 17359828 ccattttccaatattcgtcactttgc 17359853
Score = 137 bits (69), Expect = 4e-029
Identities = 99/109 (90%)
Strand = Plus / Plus
Query: 1124 cactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagatcattta 1183
|||| |||||||||||||||| |||||||||||||||||| |||||||||||||| || |
Sbjct: 17360585 cacttacatcttcaccaatggctacagcctcaggataaagcccatgaattagatcgttca 17360644
Query: 1184 ccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaata 1232
|||||||||||||||| |||||||| ||||| || ||||| ||||||||
Sbjct: 17360645 ccagcatcaagtaaactactgcatcaacatcagtagcaaatccaaaata 17360693
Score = 115 bits (58), Expect = 1e-022
Identities = 106/122 (86%)
Strand = Plus / Plus
Query: 433 tagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaaatctcccttttcg 492
|||||||||||||| || | ||||||||||||||||| |||||||||||||| | |||
Sbjct: 17357761 tagtcaaaatagctattactccagtggaagttgaacacgaataccaaatctcctctctcg 17357820
Query: 493 aacacaatcaccttatcctcctcatgtttccgggaaatatactggtgatcagatgtcatg 552
|| | ||||||||||||||||| ||||| || || ||||||||||| ||||||||||||
Sbjct: 17357821 aagatgatcaccttatcctcctcgtgtttgcgcgatatatactggtgctcagatgtcatg 17357880
Query: 553 aa 554
||
Sbjct: 17357881 aa 17357882
Score = 105 bits (53), Expect = 1e-019
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 557 catatttttgctcaagatgttgcattgcctgatcaaactcttgcataccatgatacctaa 616
||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 17358376 catatttttcctcaagatgctgcatggcctgatcaaactcttgcataccatgatatctaa 17358435
Query: 617 gatagtctgcatc 629
|||| ||||||||
Sbjct: 17358436 gataatctgcatc 17358448
Score = 91.7 bits (46), Expect = 2e-015
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 1621 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 1680
||||||||| | ||||| |||||||| |||||||||||||| || || |||||||| |||
Sbjct: 17361815 ccaaagcttgcgtaataagagtgctcctggattgccattatctgtacagcattgtaccca 17361874
Query: 1681 agnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgtttatcttcggt 1740
|| |||||||| || || ||||||||||| || ||||||||||||||||||||
Sbjct: 17361875 agctttttaattcttggtagcacctcatccctaaaattagcatatgtgtttatcttcggt 17361934
Query: 1741 tcc 1743
|||
Sbjct: 17361935 tcc 17361937
Score = 77.8 bits (39), Expect = 3e-011
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 1512 atccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagacttcaattcttc 1571
|||||| || || |||||||||||||| || ||| ||||||||| ||| ||||| |||||
Sbjct: 17361558 atccataagtacaagcaaaccaagctcgtgagctttatcaatcagagatttcaagtcttc 17361617
Query: 1572 tggggtaccaaaacgactacttggcgc 1598
|||||| || ||||| |||||||||||
Sbjct: 17361618 tggggttccgaaacggctacttggcgc 17361644
Score = 77.8 bits (39), Expect = 3e-011
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 1256 ttacttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccat 1315
|||| ||||| || || ||||| ||||||||||||||||| |||||||| || || ||||
Sbjct: 17360928 ttacctgtaaaccatgatgagtatacatcatggaggtcaccccatcaaatcgaaacccat 17360987
Query: 1316 caaacttatattcctcgagccaccatctagcattggagagaagaaatcttaaaac 1370
||||||| ||||| || |||||||| || ||||| || || | | ||||||||||
Sbjct: 17360988 caaacttgtattcttcaagccaccaccttgcattcgacagtaaatatcttaaaac 17361042
Score = 73.8 bits (37), Expect = 4e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 1742 ccgggctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggtt 1801
|||||||||||||||| | ||||| |||||||||||||| || ||||||||||||||||
Sbjct: 17362570 ccgggctactcattccaatatgtgattcatatatccgcagcgaatttggtcgtttaggtt 17362629
Query: 1802 g 1802
|
Sbjct: 17362630 g 17362630
Score = 71.9 bits (36), Expect = 2e-009
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 1026 cttgagaaggtcaatccatttgtcagccacagccatatgcatccgatagtcaaaacctac 1085
|||||| || || ||||||||||| | ||||||||||||| |||||||||||||| ||
Sbjct: 17360125 cttgaggagttcgatccatttgtccggtacagccatatgcaaacgatagtcaaaaccaac 17360184
Query: 1086 cccaccatcgtgaacaggaa 1105
|||||||| ||||||||||
Sbjct: 17360185 accaccatcttgaacaggaa 17360204
Score = 67.9 bits (34), Expect = 3e-008
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 1828 tcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcactgag 1887
|||||||| ||||||||||| || || | || |||||||| ||||| |||||||| |
Sbjct: 17362841 tcttcaggtggatcataatatataccgttgtacggtatttcacctggagcctgcacagca 17362900
Query: 1888 tacttgatccaggctggaattgaatcctttatccctgatggagtatccat 1937
|||| |||||||| |||||||||||||||| || ||||| ||||||||
Sbjct: 17362901 aacttaatccaggcaggaattgaatcctttacgccagatggtgtatccat 17362950
Score = 61.9 bits (31), Expect = 2e-006
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||||||||| || ||||||||||||| | | ||||| |||||||||||||| ||
Sbjct: 17363050 acctttacacgtgagccatgaggaatagcaggggatccatcagcattgttaggcagggaa 17363109
Query: 2002 atttcccaaacaccaaactcatt 2024
|| |||||||||||| |||||||
Sbjct: 17363110 atctcccaaacaccatactcatt 17363132
Score = 58.0 bits (29), Expect = 3e-005
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 634 aggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaacttacca 693
||||||||||| ||||| ||||| ||| |||||| ||| || ||||| | | | |||
Sbjct: 17358642 aggtcaaatctacgacggcatttatcaaaactgtagttgtttcctgggaggaccgagcca 17358701
Query: 694 cttggaagtctttgcggacctcttggaaaatctatccattc 734
||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 17358702 tttggaagactttgcgggcctcttgggaaatctatccattc 17358742
Score = 56.0 bits (28), Expect = 1e-004
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 2037 atctgcatttggatcccagttgttgaagtcacccaccaatgctgcaga 2084
|||||||||||| | ||| |||||||||||||| || |||||||||||
Sbjct: 17363728 atctgcatttgggttccaattgttgaagtcacctactaatgctgcaga 17363775
>gb|AQ856076.1|AQ856076 nbeb0001A02r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0001A02r, DNA sequence
Length = 479
Score = 165 bits (83), Expect = 2e-037
Identities = 119/131 (90%)
Strand = Plus / Minus
Query: 1369 acttcccagttcccatagttaaataggcgagaatcccacatccagtgatggccacgtgga 1428
|||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||| |
Sbjct: 425 acttcccaattcccatagttgaaaaggcgagaatcccacatccaatgatggccgcgtgaa 366
Query: 1429 ccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaacccatccagagtatta 1488
||||| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 365 ccactatgaaagtaatgcgtatctgtaccatcaaaaccgttcaacccatctagggtatta 306
Query: 1489 cttgacgcatg 1499
||||||||||
Sbjct: 305 tttgacgcatg 295
>gb|AQ576669.1|AQ576669 nbxb0089J01r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0089J01r, DNA sequence
Length = 610
Score = 151 bits (76), Expect = 2e-033
Identities = 118/132 (89%)
Strand = Plus / Plus
Query: 1124 cactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagatcattta 1183
|||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 90 cacttacatcttcaccgatggttatggcctcaggataaagtccatgaattaaatcattta 149
Query: 1184 ccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaatactcattgaagt 1243
|||||||||||||||| |||||||| |||| |||||||| ||||| || ||| || |||
Sbjct: 150 ccagcatcaagtaaactactgcatcagcatcagtggcaaatccaaagtattcactgtagt 209
Query: 1244 tccccgtaaatg 1255
||||||||||||
Sbjct: 210 tccccgtaaatg 221
Score = 131 bits (66), Expect = 2e-027
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 1257 tacttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccatc 1316
|||||||||||| || |||||||||||||| ||||| ||||| ||||| | |||||||||
Sbjct: 363 tacttgtaatccatgatgagtgtacatcattgaggttacaccgtcaaatctgaaaccatc 422
Query: 1317 aaacttatattcctcgagccaccatctagcattggagagaagaaatctta 1366
||||||||| ||||||||||||||||| |||||||| || ||||||||||
Sbjct: 423 aaacttatactcctcgagccaccatcttgcattggatagtagaaatctta 472
Score = 44.1 bits (22), Expect = 0.40
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1378 ttcccatagttaaataggcgagaatcccac 1407
||||||||||| || |||||||||||||||
Sbjct: 581 ttcccatagttgaaaaggcgagaatcccac 610
>gb|CV733708.1|CV733708 FLO--08-L22.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--08-L22,
mRNA sequence
Length = 174
Score = 139 bits (70), Expect = 9e-030
Identities = 100/110 (90%)
Strand = Plus / Minus
Query: 589 tcaaactcttgcataccatgatacctaagatagtctgcatcacccaggtcaaatcttcga 648
||||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 135 tcaaactctagcatgccacgatacctaagatagtccgcatcacccaggtcaaatcttcga 76
Query: 649 cgacatttgtcataactgttgttattccctggaataaacttaccacttgg 698
|| ||||| ||||||||||||||||||||||| || || |||||| ||||
Sbjct: 75 cggcatttatcataactgttgttattccctgggatgaatttaccatttgg 26
>gb|AACV01004554.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004554, whole
genome shotgun sequence
Length = 5362
Score = 139 bits (70), Expect = 9e-030
Identities = 109/122 (89%)
Strand = Plus / Minus
Query: 1824 tacctcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcac 1883
|||||||||||||||||||||||| || |||| ||||| |||||||||| |||||||||
Sbjct: 5342 tacctcttcaggaggatcataatatattccattgtatgggatttctcctgcggcctgcac 5283
Query: 1884 tgagtacttgatccaggctggaattgaatcctttatccctgatggagtatccattctcac 1943
||||||||||||||||| ||||| ||||||||||| || |||||||| ||||||| |||
Sbjct: 5282 agagtacttgatccaggcaggaatagaatcctttataccagatggagtttccattcgcac 5223
Query: 1944 ct 1945
||
Sbjct: 5222 ct 5221
Score = 101 bits (51), Expect = 2e-018
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||||||||| || ||||| |||||||| |||| ||||| ||||||||||||||||||
Sbjct: 5140 acctttacacgtgagccatgtggaataggagatgagccatcagcattgttaggcagaaaa 5081
Query: 2002 atttcccaaacaccaaactcatt 2024
|| ||||||||||||||||||||
Sbjct: 5080 atctcccaaacaccaaactcatt 5058
Score = 71.9 bits (36), Expect = 2e-009
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 2025 tttgctcatacgatctgcatttggatcccagttgttgaagtcacccaccaatgctgcaga 2084
||||||||| || ||||||||||||| ||| |||||||||||||| || |||||||||||
Sbjct: 4442 tttgctcatgcggtctgcatttggattccaattgttgaagtcacctactaatgctgcaga 4383
Score = 65.9 bits (33), Expect = 1e-007
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 2224 taccgatactcaagatggtacttatagccttgcaacatggggtcaatctggaatattttt 2283
|||||||| |||||||||||||||||||| | | ||| | ||| |||||||||||||||
Sbjct: 3230 taccgatattcaagatggtacttatagccattaagcatagagtccatctggaatattttt 3171
Query: 2284 tgtccatcgcttggtggggggaccactcg 2312
|| ||||| | || ||| ||||| |||||
Sbjct: 3170 tgcccatctcctgttggtgggacaactcg 3142
Score = 61.9 bits (31), Expect = 2e-006
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 2132 gattaaatccaaacttctcataactacgggagaaggcttccaagcctccttcatgttcat 2191
|||||||||||||||||||||||| || || || | ||||| |||||||||| | ||
Sbjct: 4048 gattaaatccaaacttctcataaccgcgagaaaatgtttccagtcctccttcatactgat 3989
Query: 2192 caatgtctgaacggattcttctatagaggct 2222
||||||||||||| | ||| ||||| |||||
Sbjct: 3988 caatgtctgaacgcagtctcctatataggct 3958
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0476H10
Length = 151703
Score = 139 bits (70), Expect = 9e-030
Identities = 109/122 (89%)
Strand = Plus / Plus
Query: 1824 tacctcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcac 1883
|||||||||||||||||||||||| || |||| ||||| |||||||||| |||||||||
Sbjct: 765 tacctcttcaggaggatcataatatattccattgtatgggatttctcctgcggcctgcac 824
Query: 1884 tgagtacttgatccaggctggaattgaatcctttatccctgatggagtatccattctcac 1943
||||||||||||||||| ||||| ||||||||||| || |||||||| ||||||| |||
Sbjct: 825 agagtacttgatccaggcaggaatagaatcctttataccagatggagtttccattcgcac 884
Query: 1944 ct 1945
||
Sbjct: 885 ct 886
Score = 101 bits (51), Expect = 2e-018
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||||||||| || ||||| |||||||| |||| ||||| ||||||||||||||||||
Sbjct: 967 acctttacacgtgagccatgtggaataggagatgagccatcagcattgttaggcagaaaa 1026
Query: 2002 atttcccaaacaccaaactcatt 2024
|| ||||||||||||||||||||
Sbjct: 1027 atctcccaaacaccaaactcatt 1049
Score = 73.8 bits (37), Expect = 4e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1746 gctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggttg 1802
|||||||||||| ||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct: 495 gctactcattccaacatgagtttcgtatatccgcaatgactttggtcttttaggttg 551
Score = 71.9 bits (36), Expect = 2e-009
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 2025 tttgctcatacgatctgcatttggatcccagttgttgaagtcacccaccaatgctgcaga 2084
||||||||| || ||||||||||||| ||| |||||||||||||| || |||||||||||
Sbjct: 1665 tttgctcatgcggtctgcatttggattccaattgttgaagtcacctactaatgctgcaga 1724
Score = 65.9 bits (33), Expect = 1e-007
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 2224 taccgatactcaagatggtacttatagccttgcaacatggggtcaatctggaatattttt 2283
|||||||| |||||||||||||||||||| | | ||| | ||| |||||||||||||||
Sbjct: 2877 taccgatattcaagatggtacttatagccattaagcatagagtccatctggaatattttt 2936
Query: 2284 tgtccatcgcttggtggggggaccactcg 2312
|| ||||| | || ||| ||||| |||||
Sbjct: 2937 tgcccatctcctgttggtgggacaactcg 2965
Score = 61.9 bits (31), Expect = 2e-006
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 2132 gattaaatccaaacttctcataactacgggagaaggcttccaagcctccttcatgttcat 2191
|||||||||||||||||||||||| || || || | ||||| |||||||||| | ||
Sbjct: 2059 gattaaatccaaacttctcataaccgcgagaaaatgtttccagtcctccttcatactgat 2118
Query: 2192 caatgtctgaacggattcttctatagaggct 2222
||||||||||||| | ||| ||||| |||||
Sbjct: 2119 caatgtctgaacgcagtctcctatataggct 2149
>gb|CV733707.1|CV733707 FLO--08-L22.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--08-L22,
mRNA sequence
Length = 494
Score = 137 bits (69), Expect = 4e-029
Identities = 135/157 (85%)
Strand = Plus / Plus
Query: 248 ctggagcatagacgacacatgttctgcttggtgtataaaccgagaatgaatatggcctat 307
||||||||||||| || || |||||||| || | |||||| ||||| || || ||||| |
Sbjct: 317 ctggagcatagacaacgcaggttctgctaggagaataaactgagaacgagtagggcctgt 376
Query: 308 tatcatgcgaacagtcggcggtgaagtgctcggctgcgtgatggatcctgctaaatccac 367
| ||||| ||||| ||||| ||||||||||| || | |||||||||||||| ||||||||
Sbjct: 377 tgtcatgtgaacaatcggcagtgaagtgctctgcagtgtgatggatcctgccaaatccac 436
Query: 368 caaatagtccagcgtcggagtccaagaccaccttata 404
|||| |||||||| || ||||||||||||||||||||
Sbjct: 437 caaagagtccagcatctgagtccaagaccaccttata 473
>dbj|AG210010.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE9005_0_403_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE9005, genomic survey sequence
Length = 559
Score = 117 bits (59), Expect = 3e-023
Identities = 92/103 (89%)
Strand = Plus / Minus
Query: 632 ccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaacttac 691
||||||||||||||||||| ||||| ||||||||||||||||||||||| || || ||||
Sbjct: 225 ccaggtcaaatcttcgacggcatttatcataactgttgttattccctgggatgaatttac 166
Query: 692 cacttggaagtctttgcggacctcttggaaaatctatccattc 734
|| |||||||| ||| ||| ||||||||||||| ||||||||
Sbjct: 165 catttggaagtacttgtggagctcttggaaaatcaatccattc 123
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 591 aaactcttgcataccatgatacctaagatagtctgcatcaccc 633
||||||| |||| ||| |||||||||||||||| |||| ||||
Sbjct: 501 aaactctagcatgccacgatacctaagatagtccgcataaccc 459
>dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0458B05
Length = 144917
Score = 117 bits (59), Expect = 3e-023
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 420 acaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaa 479
|||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 144178 acaaccaacacggtagtcaaaatagctgttactccaatggaagttgaacacaaataccag 144237
Query: 480 atctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatatactggtg 539
||||||||| || || | ||||| ||||||||| ||||| || || || || ||||||||
Sbjct: 144238 atctcccttctcaaatataatcatcttatcctcttcatgctttcgagatatgtactggtg 144297
Query: 540 atcagatgtcatgaa 554
|| |||||||||||
Sbjct: 144298 gtctgatgtcatgaa 144312
Score = 91.7 bits (46), Expect = 2e-015
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 323 cggcggtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgt 382
|||| ||||||||||| || | |||||||||||||| |||||||||||| |||||||| |
Sbjct: 143456 cggcagtgaagtgctctgcagtgtgatggatcctgccaaatccaccaaagagtccagcat 143515
Query: 383 cggagtccaagaccacct 400
| ||||||||||||||||
Sbjct: 143516 ctgagtccaagaccacct 143533
Score = 58.0 bits (29), Expect = 3e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 589 tcaaactcttgcataccatgatacctaagatagtctgcatcaccc 633
||||||||| |||| ||| |||||||||||||||| |||||||||
Sbjct: 144848 tcaaactctagcatgccacgatacctaagatagtccgcatcaccc 144892
>gb|AQ690523.1|AQ690523 nbxb0082O11f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0082O11f, DNA sequence
Length = 465
Score = 105 bits (53), Expect = 1e-019
Identities = 104/121 (85%)
Strand = Plus / Plus
Query: 734 caggatgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattg 793
||||||| ||| ||| |||| ||||||||||||||||| | || || |||| ||||| |
Sbjct: 343 caggatgcccagactgatttgccatgaaattaagataggcttcggctgctaagcccatgg 402
Query: 794 tgataagtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtc 853
||| ||| |||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 403 tgacaagcctaatcattttatgtaatgctatcccacgatcaatgcgaggtgttgaaggtc 462
Query: 854 t 854
|
Sbjct: 463 t 463
Score = 58.0 bits (29), Expect = 3e-005
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 634 aggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaacttacca 693
||||||||||| ||||| ||||| ||| |||||| ||| || ||||| | | | |||
Sbjct: 114 aggtcaaatctacgacggcatttatcaaaactgtagttgtttcctgggaggaccgagcca 173
Query: 694 cttggaagtctttgcggacctcttggaaaatctatccattc 734
||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 174 tttggaagactttgcgggcctcttgggaaatctatccattc 214
>gb|AQ271974.1|AQ271974 nbxb0027E13r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0027E13r, DNA sequence
Length = 720
Score = 73.8 bits (37), Expect = 4e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1746 gctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggttg 1802
|||||||||||| ||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct: 544 gctactcattccaacatgagtttcgtatatccgcaatgactttggtcttttaggttg 600
Score = 46.1 bits (23), Expect = 0.10
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1690 attcttgggaggacttcatccctaaagtttacatatgtgtttatctt 1736
|||||||| || || ||||||||||||||| |||| ||||| |||||
Sbjct: 5 attcttggaagcacctcatccctaaagtttgcatacgtgttgatctt 51
>gb|AU096669.1|AU096669 AU096669 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S14669, mRNA sequence
Length = 709
Score = 73.8 bits (37), Expect = 4e-010
Identities = 169/213 (79%)
Strand = Plus / Minus
Query: 268 gttctgcttggtgtataaaccgagaatgaatatggcctattatcatgcgaacagtcggcg 327
||||||||||| || || |||||||||||| |||| || || ||||||| ||||| ||
Sbjct: 213 gttctgcttggggtgtacaccgagaatgaacatggtctgttgtcatgcggccagtcagca 154
Query: 328 gtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgtcggag 387
||||||| ||| || | |||| | || || ||||||||||| || ||| |||| |||
Sbjct: 153 gtgaagtactcagcatcatgatcaagccgactgaatccaccaaagaggccatcgtctgag 94
Query: 388 tccaagaccaccttatacaccccaggctttcgacaaccaatacggtagtcaaaatagctg 447
||||| || | ||| ||| ||||||||| |||||| | || ||||||||||||||
Sbjct: 93 tccaacacaatcttgtactttccaggctttaaacaaccgacgcgatagtcaaaatagcta 34
Query: 448 ttgttgcagtggaagttgaacacaaataccaaa 480
|| | ||||||||||||||||| |||||||||
Sbjct: 33 ttactccagtggaagttgaacacgaataccaaa 1
>emb|AL731641.4| Oryza sativa (japonica cultivar-group) chromosome 4 clone OSJNBa0042I15,
*** SEQUENCING IN PROGRESS ***, 11 ordered pieces
Length = 158354
Score = 73.8 bits (37), Expect = 4e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 1742 ccgggctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggtt 1801
|||||||||||||||| | ||||| |||||||||||||| || ||||||||||||||||
Sbjct: 121919 ccgggctactcattccaatatgtgattcatatatccgcagcgaatttggtcgtttaggtt 121978
Query: 1802 g 1802
|
Sbjct: 121979 g 121979
Score = 61.9 bits (31), Expect = 2e-006
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||||||||| || ||||||||||||| | | ||||| |||||||||||||| ||
Sbjct: 122399 acctttacacgtgagccatgaggaatagcaggggatccatcagcattgttaggcagggaa 122458
Query: 2002 atttcccaaacaccaaactcatt 2024
|| |||||||||||| |||||||
Sbjct: 122459 atctcccaaacaccatactcatt 122481
Score = 60.0 bits (30), Expect = 7e-006
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 1828 tcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcactgag 1887
|||||||| ||||||||||| || || | || |||||||| ||||| |||||||| |
Sbjct: 122190 tcttcaggtggatcataatatataccgttgtacggtatttcacctggagcctgcacagca 122249
Query: 1888 tacttgatccaggctggaattgaatcctttatccctgatggagtatccat 1937
|||| |||||||| ||||| |||||||||| || ||||| ||||||||
Sbjct: 122250 aacttaatccaggcaggaatagaatcctttacgccagatggtgtatccat 122299
Score = 56.0 bits (28), Expect = 1e-004
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 2037 atctgcatttggatcccagttgttgaagtcacccaccaatgctgcaga 2084
|||||||||||| | ||| |||||||||||||| || |||||||||||
Sbjct: 123077 atctgcatttgggttccaattgttgaagtcacctactaatgctgcaga 123124
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 73.8 bits (37), Expect = 4e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 1742 ccgggctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggtt 1801
|||||||||||||||| | ||||| |||||||||||||| || ||||||||||||||||
Sbjct: 20249417 ccgggctactcattccaatatgtgattcatatatccgcagcgaatttggtcgtttaggtt 20249476
Query: 1802 g 1802
|
Sbjct: 20249477 g 20249477
Score = 61.9 bits (31), Expect = 2e-006
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||||||||| || ||||||||||||| | | ||||| |||||||||||||| ||
Sbjct: 20249897 acctttacacgtgagccatgaggaatagcaggggatccatcagcattgttaggcagggaa 20249956
Query: 2002 atttcccaaacaccaaactcatt 2024
|| |||||||||||| |||||||
Sbjct: 20249957 atctcccaaacaccatactcatt 20249979
Score = 60.0 bits (30), Expect = 7e-006
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 1828 tcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcactgag 1887
|||||||| ||||||||||| || || | || |||||||| ||||| |||||||| |
Sbjct: 20249688 tcttcaggtggatcataatatataccgttgtacggtatttcacctggagcctgcacagca 20249747
Query: 1888 tacttgatccaggctggaattgaatcctttatccctgatggagtatccat 1937
|||| |||||||| ||||| |||||||||| || ||||| ||||||||
Sbjct: 20249748 aacttaatccaggcaggaatagaatcctttacgccagatggtgtatccat 20249797
Score = 56.0 bits (28), Expect = 1e-004
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 2037 atctgcatttggatcccagttgttgaagtcacccaccaatgctgcaga 2084
|||||||||||| | ||| |||||||||||||| || |||||||||||
Sbjct: 20250575 atctgcatttgggttccaattgttgaagtcacctactaatgctgcaga 20250622
>gb|AQ864199.1|AQ864199 nbeb0022L19r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0022L19r, DNA sequence
Length = 806
Score = 56.0 bits (28), Expect = 1e-004
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 2037 atctgcatttggatcccagttgttgaagtcacccaccaatgctgcaga 2084
|||||||||||| | ||| |||||||||||||| || |||||||||||
Sbjct: 299 atctgcatttgggttccaattgttgaagtcacctactaatgctgcaga 346
>gb|C99341.1|C99341 C99341 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10727_7A, mRNA sequence
Length = 582
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 253 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 202
>gb|CB668586.1|CB668586 OSJNEd16I04.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16I04 5', mRNA sequence
Length = 810
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 703 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 652
>gb|CB668587.1|CB668587 OSJNEd16I04.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16I04 3', mRNA sequence
Length = 862
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 139 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 190
>gb|CF196291.1|CF196291 Azvi2.1_B03 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.1B03 5', mRNA sequence
Length = 550
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 59 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 8
>gb|CF196311.1|CF196311 Azvi2.1_D03 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.1D03 5', mRNA sequence
Length = 430
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 59 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 8
>gb|CF196373.1|CF196373 Azvi2.2_B11 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.2B11 5', mRNA sequence
Length = 480
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 59 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 8
>gb|CF196390.1|CF196390 Azvi2.2_D07 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.2D07 5', mRNA sequence
Length = 389
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 59 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 8
>gb|CF196400.1|CF196400 Azvi2.2_E07 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.2E07 5', mRNA sequence
Length = 289
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 59 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 8
>gb|CF196410.1|CF196410 Azvi2.2_F07 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.2F07 5', mRNA sequence
Length = 360
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 59 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 8
>gb|CF196422.1|CF196422 Azvi2.2_G10 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.2G10 5', mRNA sequence
Length = 369
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 59 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 8
>gb|CF328664.1|CF328664 NACL--03-K20.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--03-K20, mRNA sequence
Length = 569
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 400 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 349
>gb|CF328834.1|CF328834 NACL--03-O21.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--03-O21, mRNA sequence
Length = 565
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 400 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 349
>gb|CF329597.1|CF329597 NACL--04-P17.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--04-P17, mRNA sequence
Length = 590
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 400 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 349
>gb|CF330102.1|CF330102 NACL--05-K23.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--05-K23, mRNA sequence
Length = 596
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 400 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 349
>gb|CF331462.1|CF331462 NACL--07-J14.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--07-J14, mRNA sequence
Length = 637
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 390 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 339
>gb|AF136268.1|AF136268 Oryza sativa subsp. japonica starch-branching enzyme I (Rbe1) mRNA,
complete cds
Length = 2768
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 1856 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 1805
>dbj|D11082.1|RICBE1 Oryza sativa (japonica cultivar-group) mRNA for branching enzyme-I,
complete cds
Length = 2739
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 1835 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 1784
>dbj|D10752.1|RICBE Oryza sativa (japonica cultivar-group) mRNA for branching enzyme,
complete cds
Length = 2740
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 1845 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 1794
>gb|AY302112.1| Oryza sativa (japonica cultivar-group) starch-branching enzyme 1
(Sbe1) mRNA, complete cds
Length = 2490
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 1818 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 1767
>dbj|AK065121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O19, full
insert sequence
Length = 2729
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 1777 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 1726
>dbj|AK068920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170H02, full
insert sequence
Length = 3827
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 2932 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 2881
>dbj|AK119436.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-B02, full
insert sequence
Length = 3554
Score = 56.0 bits (28), Expect = 1e-004
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 1933 ctcttggaaagtcaatccattctggatggccaaactcattgcccataaaatt 1882
>gb|CF326784.1|CF326784 NACL--01-A02.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-A02, mRNA sequence
Length = 596
Score = 48.1 bits (24), Expect = 0.026
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| |||| ||||||||||| ||||| |||||
Sbjct: 400 ctcttggaaagtcaatccattctggatagccaaactcattgcccataaaatt 349
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,024,534
Number of Sequences: 438736
Number of extensions: 4024534
Number of successful extensions: 10452
Number of sequences better than 0.5: 58
Number of HSP's better than 0.5 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9971
Number of HSP's gapped (non-prelim): 451
length of query: 2729
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 2707
effective length of database: 2,790,767,724
effective search space: 7554608228868
effective search space used: 7554608228868
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)