BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521918.2.1
(417 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU096900.1|AU096900 AU096900 Rice green shoot Oryza sati... 90 1e-015
gb|AU174576.1|AU174576 AU174576 Rice cDNA from leaf Oryza s... 90 1e-015
dbj|AK121629.1| Oryza sativa (japonica cultivar-group) cDNA... 90 1e-015
ref|NM_190462.1| Oryza sativa (japonica cultivar-group), p... 90 1e-015
gb|AU101831.1|AU101831 AU101831 Rice green shoot Oryza sati... 86 2e-014
gb|AACV01002623.1| Oryza sativa (japonica cultivar-group) c... 80 1e-012
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 80 1e-012
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 80 1e-012
dbj|AP004366.3| Oryza sativa (japonica cultivar-group) geno... 80 1e-012
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 80 1e-012
gb|AU096839.1|AU096839 AU096839 Rice green shoot Oryza sati... 78 4e-012
gb|AU070479.1|AU070479 AU070479 Rice green shoot Oryza sati... 64 6e-008
dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA,... 54 6e-005
dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA,... 54 6e-005
gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of ... 54 6e-005
dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA,... 52 2e-004
dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.001
dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.001
dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.001
dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.001
dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.001
dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.004
dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.004
dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA,... 48 0.004
dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG213309.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG213581.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG213722.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG213724.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG213745.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG213872.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG213959.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG214163.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG214194.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG021970.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG024540.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG024556.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG024565.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG024874.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG025267.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG025393.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG025457.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG025462.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AG025544.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB154987.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB155450.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB155496.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB157011.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB157080.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB157275.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB157330.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB157416.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB157423.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB157587.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB157668.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB157705.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB157764.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB155376.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB156990.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB157415.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
dbj|AB157466.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.015
gb|DU711782.1|DU711782 LW1258_TT57-38-1 CSIROPIFGRTT_DSTDNA... 46 0.015
gb|DU711787.1|DU711787 LW1185_TT41-340-1-4 CSIROPIFGRTT_DST... 46 0.015
gb|BF889487.1|BF889487 EST056 Subtracted cDNA library of JA... 46 0.015
dbj|AG213230.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AG214478.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AG205322.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AB154905.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AB155607.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AB155884.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AB155930.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AB156010.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AB156464.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AB157268.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AB157360.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AB157398.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AB157628.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AB157724.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AB157742.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
dbj|AB158052.2| Oryza sativa (japonica cultivar-group) DNA,... 44 0.059
gb|DU711657.1|DU711657 LW1226_TT42-25-1-4 CSIROPIFGRTT_DSTD... 44 0.059
dbj|AG213125.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG213253.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG214847.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG214966.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG215047.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG024553.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG024559.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG024977.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG025117.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG025364.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG206043.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG207310.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB155391.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB155466.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB155599.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB155642.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB155981.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB156159.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB156243.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB156331.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB156813.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB156889.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB156901.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB157065.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB157086.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB157374.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB157397.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB157497.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB157771.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB157787.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB158032.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG024547.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG024890.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AG025126.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB157571.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.23
dbj|AB071805.1| Oryza sativa (japonica cultivar-group) mRNA... 42 0.23
>gb|AU096900.1|AU096900 AU096900 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16450, mRNA sequence
Length = 527
Score = 89.7 bits (45), Expect = 1e-015
Identities = 150/185 (81%)
Strand = Plus / Minus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 334 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 275
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
||||| |||||||||||| || || |||||||| || ||||| || |||||||||||
Sbjct: 274 ggggccgcagttcaaggcggatgcggtggatttctacaacctggagctcagcaacaccaa 215
Query: 121 cgttgttgatcataccacacaccatttcaagaaacatgatgggataacatttgtggtgga 180
|||| || || || || ||| ||||||||||| | || ||| |||| |||||| | ||
Sbjct: 214 tattgtcgaccacactacgcacgatttcaagaaagacgacggggtaacttttgtgattga 155
Query: 181 ggact 185
|||||
Sbjct: 154 ggact 150
>gb|AU174576.1|AU174576 AU174576 Rice cDNA from leaf Oryza sativa (japonica cultivar-group)
cDNA clone F10058, mRNA sequence
Length = 475
Score = 89.7 bits (45), Expect = 1e-015
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 2 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 61
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
||||| |||||||||||| || || |||||||| || ||||| || |||||||||||
Sbjct: 62 ggggccgcagttcaaggcggatgcggtggatttctacaacctggagctcagcaacaccaa 121
Query: 121 cgttgttgatcataccacacaccatttcaagaaacatgatgggataacatttgtggtgga 180
|||| || || || || ||| ||||||||||| | || ||| |||| |||||| | ||
Sbjct: 122 tattgtcgaccacactacgcacgatttcaagaaagacgacggggtaacttttgtgattga 181
Query: 181 ggact 185
|||||
Sbjct: 182 ggact 186
>dbj|AK121629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050C20, full
insert sequence
Length = 982
Score = 89.7 bits (45), Expect = 1e-015
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 478 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 537
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
||||| |||||||||||| || || |||||||| || ||||| || |||||||||||
Sbjct: 538 ggggccgcagttcaaggcggatgcggtggatttctacaacctggagctcagcaacaccaa 597
Query: 121 cgttgttgatcataccacacaccatttcaagaaacatgatgggataacatttgtggtgga 180
|||| || || || || ||| ||||||||||| | || ||| |||| |||||| | ||
Sbjct: 598 tattgtcgaccacactacgcacgatttcaagaaagacgacggggtaacttttgtgattga 657
Query: 181 ggact 185
|||||
Sbjct: 658 ggact 662
>ref|NM_190462.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 735
Score = 89.7 bits (45), Expect = 1e-015
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 549 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 608
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
||||| |||||||||||| || || |||||||| || ||||| || |||||||||||
Sbjct: 609 ggggccgcagttcaaggcggatgcggtggatttctacaacctggagctcagcaacaccaa 668
Query: 121 cgttgttgatcataccacacaccatttcaagaaacatgatgggataacatttgtggtgga 180
|||| || || || || ||| ||||||||||| | || ||| |||| |||||| | ||
Sbjct: 669 tattgtcgaccacactacgcacgatttcaagaaagacgacggggtaacttttgtgattga 728
Query: 181 ggact 185
|||||
Sbjct: 729 ggact 733
>gb|AU101831.1|AU101831 AU101831 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S15718, mRNA sequence
Length = 484
Score = 85.7 bits (43), Expect = 2e-014
Identities = 149/185 (80%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 201 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 260
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
||||| |||||| ||||| || || |||||||| || ||||| || |||||||||||
Sbjct: 261 ggggccgcagttcaangcggatgcggtggatttctacaacctggagctcagcaacaccaa 320
Query: 121 cgttgttgatcataccacacaccatttcaagaaacatgatgggataacatttgtggtgga 180
|||| || || || || ||| ||||||||||| | || ||| |||| |||||| | ||
Sbjct: 321 tattgtcgancacactacgcacgatttcaagaaagacgacggggtaacttttgtgattga 380
Query: 181 ggact 185
|||||
Sbjct: 381 ggact 385
>gb|AACV01002623.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002623, whole
genome shotgun sequence
Length = 16548
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 12662 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 12603
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
||||| |||||||||||| || || |||||||| || ||||| || |||||||||||
Sbjct: 12602 ggggccgcagttcaaggcggatgcggtggatttctacaacctggagctcagcaacaccaa 12543
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 35757354 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 35757413
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
||||| |||||||||||| || || |||||||| || ||||| || |||||||||||
Sbjct: 35757414 ggggccgcagttcaaggcggatgcggtggatttctacaacctggagctcagcaacaccaa 35757473
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 10204737 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 10204796
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
||||| |||||||||||| || || |||||||| || ||||| || |||||||||||
Sbjct: 10204797 ggggccgcagttcaaggcggatgcggtggatttctacaacctggagctcagcaacaccaa 10204856
>dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0460C04
Length = 189043
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 80021 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 80080
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
||||| |||||||||||| || || |||||||| || ||||| || |||||||||||
Sbjct: 80081 ggggccgcagttcaaggcggatgcggtggatttctacaacctggagctcagcaacaccaa 80140
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 9928893 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 9928952
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
||||| |||||||||||| || || |||||||| || ||||| || |||||||||||
Sbjct: 9928953 ggggccgcagttcaaggcggatgcggtggatttctacaacctggagctcagcaacaccaa 9929012
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 35130614 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 35130673
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
||||| |||||||||||| || || |||||||| || ||||| || |||||||||||
Sbjct: 35130674 ggggccgcagttcaaggcggatgcggtggatttctacaacctggagctcagcaacaccaa 35130733
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 35676684 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 35676743
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
||||| |||||||||||| || || |||||||| || ||||| || |||||||||||
Sbjct: 35676744 ggggccgcagttcaaggcggatgcggtggatttctacaacctggagctcagcaacaccaa 35676803
>gb|AU096839.1|AU096839 AU096839 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16253, mRNA sequence
Length = 449
Score = 77.8 bits (39), Expect = 4e-012
Identities = 150/186 (80%), Gaps = 1/186 (0%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 96 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 155
Query: 61 cgggccttt-gttcaaggcggacgccgttgatttctataatctggaactgagcaacacca 119
||||| |||||||||||| || || |||||||| || ||||| || ||||||||||
Sbjct: 156 ggggccgncagttcaaggcggatgcggtggatttctacaacctggagctcagcaacacca 215
Query: 120 acgttgttgatcataccacacaccatttcaagaaacatgatgggataacatttgtggtgg 179
| |||| || || || || ||| ||||||||||| | || ||| |||| |||||| | |
Sbjct: 216 atattgtcgaccacactacgcacgatttcaagaaagacgacggggtaacttttgtgattg 275
Query: 180 aggact 185
||||||
Sbjct: 276 aggact 281
>gb|AU070479.1|AU070479 AU070479 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16253_8A, mRNA sequence
Length = 408
Score = 63.9 bits (32), Expect = 6e-008
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| ||| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||
Sbjct: 195 ctgcgtcttcagggtttccggcgctaagtttctgaagctgcacatcgggacctggcatgc 254
Query: 61 cgggcctttgttcaaggcggacgccgttgatttcta 96
||||| |||||||||||| || || ||||||||
Sbjct: 255 ggggccgcagttcaaggcggatgcggtggatttcta 290
>dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00161T, 3'
flanking sequence of Tos17 insertion in rice strain
H0592, genomic survey sequence
Length = 309
Score = 54.0 bits (27), Expect = 6e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 390 tcagtacctgcccgggcggccgctcga 416
|||||||||||||||||||||||||||
Sbjct: 276 tcagtacctgcccgggcggccgctcga 302
>dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11953T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9058, genomic survey sequence
Length = 210
Score = 54.0 bits (27), Expect = 6e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 390 tcagtacctgcccgggcggccgctcga 416
|||||||||||||||||||||||||||
Sbjct: 144 tcagtacctgcccgggcggccgctcga 170
>gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of JA/BTH-treated rice leaf Oryza
sativa (japonica cultivar-group) cDNA clone JBI35, mRNA
sequence
Length = 350
Score = 54.0 bits (27), Expect = 6e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 391 cagtacctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||||||
Sbjct: 27 cagtacctgcccgggcggccgctcgaa 1
>dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00181T, 3'
flanking sequence of Tos17 insertion in rice strain
H0615, genomic survey sequence
Length = 447
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 391 cagtacctgcccgggcggccgctcga 416
||||||||||||||||||||||||||
Sbjct: 418 cagtacctgcccgggcggccgctcga 443
>dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09682T, 3'
flanking sequence of Tos17 insertion in rice strain
ND4557, genomic survey sequence
Length = 353
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcga 416
|||||||||||||||||||||||||
Sbjct: 144 agtacctgcccgggcggccgctcga 168
>dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10610T, 3'
flanking sequence of Tos17 insertion in rice strain
ND6065, genomic survey sequence
Length = 329
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcga 416
|||||||||||||||||||||||||
Sbjct: 268 agtacctgcccgggcggccgctcga 292
>dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11702T, 3'
flanking sequence of Tos17 insertion in rice strain
ND8064, genomic survey sequence
Length = 339
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcga 416
|||||||||||||||||||||||||
Sbjct: 245 agtacctgcccgggcggccgctcga 269
>dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25930T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9028, genomic survey sequence
Length = 385
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcga 416
|||||||||||||||||||||||||
Sbjct: 314 agtacctgcccgggcggccgctcga 338
>dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28812T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1017, genomic survey sequence
Length = 253
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcga 416
|||||||||||||||||||||||||
Sbjct: 200 agtacctgcccgggcggccgctcga 224
>dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00128T, 3'
flanking sequence of Tos17 insertion in rice strain
H0450, genomic survey sequence
Length = 222
Score = 48.1 bits (24), Expect = 0.004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 391 cagtacctgcccgggcggccgctc 414
||||||||||||||||||||||||
Sbjct: 199 cagtacctgcccgggcggccgctc 222
>dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25630T, 3'
flanking sequence of Tos17 insertion in rice strain
NF8002, genomic survey sequence
Length = 485
Score = 48.1 bits (24), Expect = 0.004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccgctcga 416
||||||||||||||||||||||||
Sbjct: 207 gtacctgcccgggcggccgctcga 230
>dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA, clone:T28954T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1070, genomic survey sequence
Length = 459
Score = 48.1 bits (24), Expect = 0.004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcg 415
||||||||||||||||||||||||
Sbjct: 424 agtacctgcccgggcggccgctcg 447
>dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA, clone:T16966T, 3'
flanking sequence of Tos17 insertion in rice strain
NE8022, genomic survey sequence
Length = 327
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 291 tacctgcccgggcggccgctcga 313
>dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00072T, 3'
flanking sequence of Tos17 insertion in rice strain
H0268, genomic survey sequence
Length = 147
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 116 tacctgcccgggcggccgctcga 138
>dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00091T, 3'
flanking sequence of Tos17 insertion in rice strain
H0363, genomic survey sequence
Length = 383
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 361 tacctgcccgggcggccgctcga 383
>dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00163T, 3'
flanking sequence of Tos17 insertion in rice strain
H0596, genomic survey sequence
Length = 368
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 339 tacctgcccgggcggccgctcga 361
>dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA, clone:T02943T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0384, genomic survey sequence
Length = 280
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 244 tacctgcccgggcggccgctcga 266
>dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06795T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2764, genomic survey sequence
Length = 183
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 141 tacctgcccgggcggccgctcga 163
>dbj|AG213309.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07737T, 3'
flanking sequence of Tos17 insertion in rice strain
ND1024, genomic survey sequence
Length = 261
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 165 tacctgcccgggcggccgctcga 187
>dbj|AG213581.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09929T, 3'
flanking sequence of Tos17 insertion in rice strain
ND5009, genomic survey sequence
Length = 356
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 219 tacctgcccgggcggccgctcga 241
>dbj|AG213722.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10685T, 3'
flanking sequence of Tos17 insertion in rice strain
ND7008, genomic survey sequence
Length = 218
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 183 tacctgcccgggcggccgctcga 205
>dbj|AG213724.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10611T, 3'
flanking sequence of Tos17 insertion in rice strain
ND6066, genomic survey sequence
Length = 382
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 206 tacctgcccgggcggccgctcga 228
>dbj|AG213745.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10782T, 3'
flanking sequence of Tos17 insertion in rice strain
ND7016, genomic survey sequence
Length = 270
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 240 tacctgcccgggcggccgctcga 262
>dbj|AG213872.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11585T, 3'
flanking sequence of Tos17 insertion in rice strain
ND8067, genomic survey sequence
Length = 364
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 333 tacctgcccgggcggccgctcga 355
>dbj|AG213959.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11887T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9054, genomic survey sequence
Length = 274
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 228 tacctgcccgggcggccgctcga 250
>dbj|AG214163.1| Oryza sativa (japonica cultivar-group) DNA, clone:T12881T, 3'
flanking sequence of Tos17 insertion in rice strain
NE1501, genomic survey sequence
Length = 407
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 371 tacctgcccgggcggccgctcga 393
>dbj|AG214194.1| Oryza sativa (japonica cultivar-group) DNA, clone:T13036T, 3'
flanking sequence of Tos17 insertion in rice strain
NE1524, genomic survey sequence
Length = 282
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 197 tacctgcccgggcggccgctcga 219
>dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00123T, 3'
flanking sequence of Tos17 insertion in rice strain
H0449, genomic survey sequence
Length = 381
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctc 414
|||||||||||||||||||||||
Sbjct: 353 agtacctgcccgggcggccgctc 375
>dbj|AG021970.1| Oryza sativa (japonica cultivar-group) DNA, clone:T04522T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0629, genomic survey sequence
Length = 358
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 313 tacctgcccgggcggccgctcga 335
>dbj|AG024540.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00059T, 3'
flanking sequence of Tos17 insertion in rice strain
H0260, genomic survey sequence
Length = 293
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 267 tacctgcccgggcggccgctcga 289
>dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00101T, 3'
flanking sequence of Tos17 insertion in rice strain
H0388, genomic survey sequence
Length = 222
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctc 414
|||||||||||||||||||||||
Sbjct: 194 agtacctgcccgggcggccgctc 216
>dbj|AG024556.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00116T, 3'
flanking sequence of Tos17 insertion in rice strain
H0408, genomic survey sequence
Length = 389
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 363 tacctgcccgggcggccgctcga 385
>dbj|AG024565.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00156T, 3'
flanking sequence of Tos17 insertion in rice strain
H0592, genomic survey sequence
Length = 370
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 339 tacctgcccgggcggccgctcga 361
>dbj|AG024874.1| Oryza sativa (japonica cultivar-group) DNA, clone:T03330T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0452, genomic survey sequence
Length = 308
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 242 tacctgcccgggcggccgctcga 264
>dbj|AG025267.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06483T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2721, genomic survey sequence
Length = 202
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 150 tacctgcccgggcggccgctcga 172
>dbj|AG025393.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07474T, 3'
flanking sequence of Tos17 insertion in rice strain
ND0062, genomic survey sequence
Length = 294
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 221 tacctgcccgggcggccgctcga 243
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 532,779
Number of Sequences: 438736
Number of extensions: 532779
Number of successful extensions: 11346
Number of sequences better than 0.5: 131
Number of HSP's better than 0.5 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11096
Number of HSP's gapped (non-prelim): 250
length of query: 417
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 397
effective length of database: 2,791,645,196
effective search space: 1108283142812
effective search space used: 1108283142812
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)