BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493961.2.1
(733 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK108140.1| Oryza sativa (japonica cultivar-group) cDNA... 404 e-110
gb|AACV01005315.1| Oryza sativa (japonica cultivar-group) c... 404 e-110
ref|XM_467540.1| Oryza sativa (japonica cultivar-group), mRNA 404 e-110
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 404 e-110
dbj|AP005113.3| Oryza sativa (japonica cultivar-group) geno... 404 e-110
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 404 e-110
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 404 e-110
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 404 e-110
gb|CB672405.1|CB672405 OSJNEe06G18.r OSJNEe Oryza sativa (j... 377 e-102
gb|AU163941.1|AU163941 AU163941 Rice panicle at ripening st... 86 3e-014
ref|NT_107130.1| Oryza sativa (japonica cultivar-group) 86 3e-014
gb|AC108224.6| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
gb|AC134053.4| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 86 3e-014
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
gb|AC152840.2| Oryza sativa (japonica cultivar-group) chrom... 78 8e-012
gb|CO435684.1|CO435684 OsMR750 5MT resistant rice mutant cD... 66 3e-008
gb|AACV01023345.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
dbj|AK110842.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC O... 48 0.007
ref|NT_107151.1| Oryza sativa (japonica cultivar-group) 48 0.007
gb|AACV01023972.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
>dbj|AK108140.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-E08, full
insert sequence
Length = 1526
Score = 404 bits (204), Expect = e-110
Identities = 403/468 (86%), Gaps = 6/468 (1%)
Strand = Plus / Minus
Query: 185 tcgaacggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccgtacgcc 244
||||||||||| || |||| |||| ||||||| | |||||||| ||| |||||||||
Sbjct: 1342 tcgaacggcagcgggctcacggcgtcgctgagcgggccggcgtgccggaacccgtacgcc 1283
Query: 245 ctcagcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtcc 304
|| ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| | |
Sbjct: 1282 ctgagcacctggtcgtcggcgaagctgagcgcgcggcggatgccctcgtcgcagctcttc 1223
Query: 305 ccggagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacg 364
|| | |||||||||||| || || || ||||||||||| || || |||||||||||||||
Sbjct: 1222 cccgtgtagtgctcgttccggtggccgctgcacggctggcatccggtgaagtgcgtcacg 1163
Query: 365 aacgggcggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcg 424
|||||||| ||||||||| ||||||| |||||||||||||||| || |||| ||||||
Sbjct: 1162 aacgggcgccgccacccgctcaccccgctctccgccagcccggcgcccgccagcgcggcg 1103
Query: 425 ttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggca 484
| ||| ||| |||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 1102 tccctcgccgccgcgtacgacgcgtgctccgcctccgcgtgccgcctccgcagcggcgcc 1043
Query: 485 gctcccggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacg 544
|| |||| ||||||||||||||||||| |||||| |||||| |||||| |||| ||
Sbjct: 1042 gc-cccg-----cgctccatcgcctcgtaccgctccgtgatgttgccgagcctccccgcg 989
Query: 545 atctccatccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgccac 604
||||||| |||||| ||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 988 atctccagccagtacccctcgaagtagtagtcgctctctaggtacaccttgtcccgccac 929
Query: 605 cggctgccctcctgcagcagcatgtacacgagcgcggactggtcgtcg 652
||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 928 gggctgccgctctgcagcagcatgtacacgagcgccgactggtcgtcg 881
>gb|AACV01005315.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005315, whole
genome shotgun sequence
Length = 51470
Score = 404 bits (204), Expect = e-110
Identities = 403/468 (86%), Gaps = 6/468 (1%)
Strand = Plus / Plus
Query: 185 tcgaacggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccgtacgcc 244
||||||||||| || |||| |||| ||||||| | |||||||| ||| |||||||||
Sbjct: 22200 tcgaacggcagcgggctcacggcgtcgctgagcgggccggcgtgccggaacccgtacgcc 22259
Query: 245 ctcagcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtcc 304
|| ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| | |
Sbjct: 22260 ctgagcacctggtcgtcggcgaagctgagcgcgcggcggatgccctcgtcgcagctcttc 22319
Query: 305 ccggagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacg 364
|| | |||||||||||| || || || ||||||||||| || || |||||||||||||||
Sbjct: 22320 cccgtgtagtgctcgttccggtggccgctgcacggctggcatccggtgaagtgcgtcacg 22379
Query: 365 aacgggcggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcg 424
|||||||| ||||||||| ||||||| |||||||||||||||| || |||| ||||||
Sbjct: 22380 aacgggcgccgccacccgctcaccccgctctccgccagcccggcgcccgccagcgcggcg 22439
Query: 425 ttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggca 484
| ||| ||| |||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 22440 tccctcgccgccgcgtacgacgcgtgctccgcctccgcgtgccgcctccgcagcggcgcc 22499
Query: 485 gctcccggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacg 544
|| |||| ||||||||||||||||||| |||||| |||||| |||||| |||| ||
Sbjct: 22500 gc-cccg-----cgctccatcgcctcgtaccgctccgtgatgttgccgagcctccccgcg 22553
Query: 545 atctccatccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgccac 604
||||||| |||||| ||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 22554 atctccagccagtacccctcgaagtagtagtcgctctctaggtacaccttgtcccgccac 22613
Query: 605 cggctgccctcctgcagcagcatgtacacgagcgcggactggtcgtcg 652
||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 22614 gggctgccgctctgcagcagcatgtacacgagcgccgactggtcgtcg 22661
>ref|XM_467540.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1526
Score = 404 bits (204), Expect = e-110
Identities = 403/468 (86%), Gaps = 6/468 (1%)
Strand = Plus / Minus
Query: 185 tcgaacggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccgtacgcc 244
||||||||||| || |||| |||| ||||||| | |||||||| ||| |||||||||
Sbjct: 1342 tcgaacggcagcgggctcacggcgtcgctgagcgggccggcgtgccggaacccgtacgcc 1283
Query: 245 ctcagcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtcc 304
|| ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| | |
Sbjct: 1282 ctgagcacctggtcgtcggcgaagctgagcgcgcggcggatgccctcgtcgcagctcttc 1223
Query: 305 ccggagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacg 364
|| | |||||||||||| || || || ||||||||||| || || |||||||||||||||
Sbjct: 1222 cccgtgtagtgctcgttccggtggccgctgcacggctggcatccggtgaagtgcgtcacg 1163
Query: 365 aacgggcggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcg 424
|||||||| ||||||||| ||||||| |||||||||||||||| || |||| ||||||
Sbjct: 1162 aacgggcgccgccacccgctcaccccgctctccgccagcccggcgcccgccagcgcggcg 1103
Query: 425 ttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggca 484
| ||| ||| |||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 1102 tccctcgccgccgcgtacgacgcgtgctccgcctccgcgtgccgcctccgcagcggcgcc 1043
Query: 485 gctcccggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacg 544
|| |||| ||||||||||||||||||| |||||| |||||| |||||| |||| ||
Sbjct: 1042 gc-cccg-----cgctccatcgcctcgtaccgctccgtgatgttgccgagcctccccgcg 989
Query: 545 atctccatccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgccac 604
||||||| |||||| ||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 988 atctccagccagtacccctcgaagtagtagtcgctctctaggtacaccttgtcccgccac 929
Query: 605 cggctgccctcctgcagcagcatgtacacgagcgcggactggtcgtcg 652
||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 928 gggctgccgctctgcagcagcatgtacacgagcgccgactggtcgtcg 881
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 404 bits (204), Expect = e-110
Identities = 403/468 (86%), Gaps = 6/468 (1%)
Strand = Plus / Minus
Query: 185 tcgaacggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccgtacgcc 244
||||||||||| || |||| |||| ||||||| | |||||||| ||| |||||||||
Sbjct: 5236583 tcgaacggcagcgggctcacggcgtcgctgagcgggccggcgtgccggaacccgtacgcc 5236524
Query: 245 ctcagcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtcc 304
|| ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| | |
Sbjct: 5236523 ctgagcacctggtcgtcggcgaagctgagcgcgcggcggatgccctcgtcgcagctcttc 5236464
Query: 305 ccggagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacg 364
|| | |||||||||||| || || || ||||||||||| || || |||||||||||||||
Sbjct: 5236463 cccgtgtagtgctcgttccggtggccgctgcacggctggcatccggtgaagtgcgtcacg 5236404
Query: 365 aacgggcggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcg 424
|||||||| ||||||||| ||||||| |||||||||||||||| || |||| ||||||
Sbjct: 5236403 aacgggcgccgccacccgctcaccccgctctccgccagcccggcgcccgccagcgcggcg 5236344
Query: 425 ttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggca 484
| ||| ||| |||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 5236343 tccctcgccgccgcgtacgacgcgtgctccgcctccgcgtgccgcctccgcagcggcgcc 5236284
Query: 485 gctcccggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacg 544
|| |||| ||||||||||||||||||| |||||| |||||| |||||| |||| ||
Sbjct: 5236283 gc-cccg-----cgctccatcgcctcgtaccgctccgtgatgttgccgagcctccccgcg 5236230
Query: 545 atctccatccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgccac 604
||||||| |||||| ||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 5236229 atctccagccagtacccctcgaagtagtagtcgctctctaggtacaccttgtcccgccac 5236170
Query: 605 cggctgccctcctgcagcagcatgtacacgagcgcggactggtcgtcg 652
||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 5236169 gggctgccgctctgcagcagcatgtacacgagcgccgactggtcgtcg 5236122
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0685G12
Length = 149155
Score = 404 bits (204), Expect = e-110
Identities = 403/468 (86%), Gaps = 6/468 (1%)
Strand = Plus / Minus
Query: 185 tcgaacggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccgtacgcc 244
||||||||||| || |||| |||| ||||||| | |||||||| ||| |||||||||
Sbjct: 51181 tcgaacggcagcgggctcacggcgtcgctgagcgggccggcgtgccggaacccgtacgcc 51122
Query: 245 ctcagcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtcc 304
|| ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| | |
Sbjct: 51121 ctgagcacctggtcgtcggcgaagctgagcgcgcggcggatgccctcgtcgcagctcttc 51062
Query: 305 ccggagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacg 364
|| | |||||||||||| || || || ||||||||||| || || |||||||||||||||
Sbjct: 51061 cccgtgtagtgctcgttccggtggccgctgcacggctggcatccggtgaagtgcgtcacg 51002
Query: 365 aacgggcggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcg 424
|||||||| ||||||||| ||||||| |||||||||||||||| || |||| ||||||
Sbjct: 51001 aacgggcgccgccacccgctcaccccgctctccgccagcccggcgcccgccagcgcggcg 50942
Query: 425 ttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggca 484
| ||| ||| |||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 50941 tccctcgccgccgcgtacgacgcgtgctccgcctccgcgtgccgcctccgcagcggcgcc 50882
Query: 485 gctcccggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacg 544
|| |||| ||||||||||||||||||| |||||| |||||| |||||| |||| ||
Sbjct: 50881 gc-cccg-----cgctccatcgcctcgtaccgctccgtgatgttgccgagcctccccgcg 50828
Query: 545 atctccatccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgccac 604
||||||| |||||| ||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 50827 atctccagccagtacccctcgaagtagtagtcgctctctaggtacaccttgtcccgccac 50768
Query: 605 cggctgccctcctgcagcagcatgtacacgagcgcggactggtcgtcg 652
||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 50767 gggctgccgctctgcagcagcatgtacacgagcgccgactggtcgtcg 50720
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 404 bits (204), Expect = e-110
Identities = 403/468 (86%), Gaps = 6/468 (1%)
Strand = Plus / Minus
Query: 185 tcgaacggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccgtacgcc 244
||||||||||| || |||| |||| ||||||| | |||||||| ||| |||||||||
Sbjct: 16573376 tcgaacggcagcgggctcacggcgtcgctgagcgggccggcgtgccggaacccgtacgcc 16573317
Query: 245 ctcagcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtcc 304
|| ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| | |
Sbjct: 16573316 ctgagcacctggtcgtcggcgaagctgagcgcgcggcggatgccctcgtcgcagctcttc 16573257
Query: 305 ccggagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacg 364
|| | |||||||||||| || || || ||||||||||| || || |||||||||||||||
Sbjct: 16573256 cccgtgtagtgctcgttccggtggccgctgcacggctggcatccggtgaagtgcgtcacg 16573197
Query: 365 aacgggcggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcg 424
|||||||| ||||||||| ||||||| |||||||||||||||| || |||| ||||||
Sbjct: 16573196 aacgggcgccgccacccgctcaccccgctctccgccagcccggcgcccgccagcgcggcg 16573137
Query: 425 ttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggca 484
| ||| ||| |||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 16573136 tccctcgccgccgcgtacgacgcgtgctccgcctccgcgtgccgcctccgcagcggcgcc 16573077
Query: 485 gctcccggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacg 544
|| |||| ||||||||||||||||||| |||||| |||||| |||||| |||| ||
Sbjct: 16573076 gc-cccg-----cgctccatcgcctcgtaccgctccgtgatgttgccgagcctccccgcg 16573023
Query: 545 atctccatccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgccac 604
||||||| |||||| ||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 16573022 atctccagccagtacccctcgaagtagtagtcgctctctaggtacaccttgtcccgccac 16572963
Query: 605 cggctgccctcctgcagcagcatgtacacgagcgcggactggtcgtcg 652
||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 16572962 gggctgccgctctgcagcagcatgtacacgagcgccgactggtcgtcg 16572915
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 404 bits (204), Expect = e-110
Identities = 403/468 (86%), Gaps = 6/468 (1%)
Strand = Plus / Minus
Query: 185 tcgaacggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccgtacgcc 244
||||||||||| || |||| |||| ||||||| | |||||||| ||| |||||||||
Sbjct: 30026440 tcgaacggcagcgggctcacggcgtcgctgagcgggccggcgtgccggaacccgtacgcc 30026381
Query: 245 ctcagcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtcc 304
|| ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| | |
Sbjct: 30026380 ctgagcacctggtcgtcggcgaagctgagcgcgcggcggatgccctcgtcgcagctcttc 30026321
Query: 305 ccggagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacg 364
|| | |||||||||||| || || || ||||||||||| || || |||||||||||||||
Sbjct: 30026320 cccgtgtagtgctcgttccggtggccgctgcacggctggcatccggtgaagtgcgtcacg 30026261
Query: 365 aacgggcggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcg 424
|||||||| ||||||||| ||||||| |||||||||||||||| || |||| ||||||
Sbjct: 30026260 aacgggcgccgccacccgctcaccccgctctccgccagcccggcgcccgccagcgcggcg 30026201
Query: 425 ttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggca 484
| ||| ||| |||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 30026200 tccctcgccgccgcgtacgacgcgtgctccgcctccgcgtgccgcctccgcagcggcgcc 30026141
Query: 485 gctcccggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacg 544
|| |||| ||||||||||||||||||| |||||| |||||| |||||| |||| ||
Sbjct: 30026140 gc-cccg-----cgctccatcgcctcgtaccgctccgtgatgttgccgagcctccccgcg 30026087
Query: 545 atctccatccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgccac 604
||||||| |||||| ||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 30026086 atctccagccagtacccctcgaagtagtagtcgctctctaggtacaccttgtcccgccac 30026027
Query: 605 cggctgccctcctgcagcagcatgtacacgagcgcggactggtcgtcg 652
||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 30026026 gggctgccgctctgcagcagcatgtacacgagcgccgactggtcgtcg 30025979
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 404 bits (204), Expect = e-110
Identities = 403/468 (86%), Gaps = 6/468 (1%)
Strand = Plus / Minus
Query: 185 tcgaacggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccgtacgcc 244
||||||||||| || |||| |||| ||||||| | |||||||| ||| |||||||||
Sbjct: 30071584 tcgaacggcagcgggctcacggcgtcgctgagcgggccggcgtgccggaacccgtacgcc 30071525
Query: 245 ctcagcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtcc 304
|| ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| | |
Sbjct: 30071524 ctgagcacctggtcgtcggcgaagctgagcgcgcggcggatgccctcgtcgcagctcttc 30071465
Query: 305 ccggagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacg 364
|| | |||||||||||| || || || ||||||||||| || || |||||||||||||||
Sbjct: 30071464 cccgtgtagtgctcgttccggtggccgctgcacggctggcatccggtgaagtgcgtcacg 30071405
Query: 365 aacgggcggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcg 424
|||||||| ||||||||| ||||||| |||||||||||||||| || |||| ||||||
Sbjct: 30071404 aacgggcgccgccacccgctcaccccgctctccgccagcccggcgcccgccagcgcggcg 30071345
Query: 425 ttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggca 484
| ||| ||| |||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 30071344 tccctcgccgccgcgtacgacgcgtgctccgcctccgcgtgccgcctccgcagcggcgcc 30071285
Query: 485 gctcccggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacg 544
|| |||| ||||||||||||||||||| |||||| |||||| |||||| |||| ||
Sbjct: 30071284 gc-cccg-----cgctccatcgcctcgtaccgctccgtgatgttgccgagcctccccgcg 30071231
Query: 545 atctccatccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgccac 604
||||||| |||||| ||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 30071230 atctccagccagtacccctcgaagtagtagtcgctctctaggtacaccttgtcccgccac 30071171
Query: 605 cggctgccctcctgcagcagcatgtacacgagcgcggactggtcgtcg 652
||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 30071170 gggctgccgctctgcagcagcatgtacacgagcgccgactggtcgtcg 30071123
>gb|CB672405.1|CB672405 OSJNEe06G18.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe06G18 3', mRNA sequence
Length = 761
Score = 377 bits (190), Expect = e-102
Identities = 386/450 (85%), Gaps = 6/450 (1%)
Strand = Plus / Plus
Query: 185 tcgaacggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccgtacgcc 244
||||||||||| || |||| |||| ||||||| | |||||||| ||| |||||||||
Sbjct: 318 tcgaacggcagcgggctcacggcgtcgctgagcgggccggcgtgccggaacccgtacgcc 377
Query: 245 ctcagcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtcc 304
|| ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| | |
Sbjct: 378 ctgagcacctggtcgtcggcgaagctgagcgcgcggcggatgccctcgtcgcagctcttc 437
Query: 305 ccggagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacg 364
|| | |||||||||||| || || || ||||||||||| || || |||||||||||||||
Sbjct: 438 cccgtgtagtgctcgttccggtggccgctgcacggctggcatccggtgaagtgcgtcacg 497
Query: 365 aacgggcggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcg 424
|||||||| ||||||||| ||||||| |||||||||||||||| || |||| ||||||
Sbjct: 498 aacgggcgccgccacccgctcaccccgctctccgccagcccggcgcccgccagcgcggcg 557
Query: 425 ttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggca 484
| ||| ||| |||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 558 tccctcgccgccgcgtacgacgcgtgctccgcctccgcgtgccgcctccgcagcggcgcc 617
Query: 485 gctcccggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacg 544
|| |||| ||||||||||||||||||| |||||| |||||| |||||| |||| ||
Sbjct: 618 gc-cccg-----cgctccatcgcctcgtaccgctccgtgatgttgccgagcctccccgcg 671
Query: 545 atctccatccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgccac 604
||||||| |||||| ||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 672 atctccagccagtacccctcgaagtagtagtcgctctctaggtacaccttgtcccgccac 731
Query: 605 cggctgccctcctgcagcagcatgtacacg 634
||||||| |||||||||||||||||||
Sbjct: 732 gggctgccgctctgcagcagcatgtacacg 761
>gb|AU163941.1|AU163941 AU163941 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11545, mRNA sequence
Length = 560
Score = 85.7 bits (43), Expect = 3e-014
Identities = 112/135 (82%)
Strand = Plus / Minus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccg 307
||||||||||||||||||||||||||||||||| ||| || | | ||||||| | | |
Sbjct: 515 agcacctggtcgtcggcgaagttgagcgcgcggttcatcccgtcggcgcagctcttcttg 456
Query: 308 gagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaac 367
|||||| || ||| ||| || | ||||||||| ||||| ||||||||||||||||||
Sbjct: 455 gagtagatcttgttcggctcgccgccgcacggctggcacccggtgaagtgcgtcacgaac 396
Query: 368 gggcggcgccacccg 382
|| || |||||||||
Sbjct: 395 ggccgccgccacccg 381
Score = 52.0 bits (26), Expect = 4e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 491 ggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctcc 550
|||||||||||| ||||||||||||| ||| |||| | ||||||| | |||| ||||
Sbjct: 260 ggccgccgctccgccgcctcgtacctcgccgcgatgtcgtcgagccggtcgacgacctcc 201
Query: 551 atccagtagccctcgaagtagtagcc 576
| |||||| |||| |||| |||||||
Sbjct: 200 acccagtacccctggaagaagtagcc 175
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 422 gcgttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcc 470
|||||||| ||| |||||||| | ||||||||| ||||||||||||||
Sbjct: 335 gcgttcctcgccgccgcgtaccgctcgtgctcccgctccgcgtgccgcc 287
>ref|NT_107130.1| Oryza sativa (japonica cultivar-group)
Length = 325940
Score = 85.7 bits (43), Expect = 3e-014
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccg 307
||||||||||||||||||||||||||||||||| ||| || | | ||||||| | | |
Sbjct: 317186 agcacctggtcgtcggcgaagttgagcgcgcggttcatcccgtcggcgcagctcttcttg 317245
Query: 308 gagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaac 367
|||||| || ||| ||| || | ||||||||| ||||| ||||||||||||||||||
Sbjct: 317246 gagtagatcttgttcggctcgccgccgcacggctggcacccggtgaagtgcgtcacgaac 317305
Query: 368 gggcggcgccacccg 382
|| || |||||||||
Sbjct: 317306 ggccgccgccacccg 317320
Score = 52.0 bits (26), Expect = 4e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 491 ggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctcc 550
|||||||||||| ||||||||||||| ||| |||| | ||||||| | |||| ||||
Sbjct: 317441 ggccgccgctccgccgcctcgtacctcgccgcgatgtcgtcgagccggtcgacgacctcc 317500
Query: 551 atccagtagccctcgaagtagtagcc 576
| |||||| |||| |||| |||||||
Sbjct: 317501 acccagtacccctggaagaagtagcc 317526
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 422 gcgttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcc 470
|||||||| ||| |||||||| | ||||||||| ||||||||||||||
Sbjct: 317366 gcgttcctcgccgccgcgtaccgctcgtgctcccgctccgcgtgccgcc 317414
>gb|AC108224.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038F07,
complete sequence
Length = 175703
Score = 85.7 bits (43), Expect = 3e-014
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccg 307
||||||||||||||||||||||||||||||||| ||| || | | ||||||| | | |
Sbjct: 166949 agcacctggtcgtcggcgaagttgagcgcgcggttcatcccgtcggcgcagctcttcttg 167008
Query: 308 gagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaac 367
|||||| || ||| ||| || | ||||||||| ||||| ||||||||||||||||||
Sbjct: 167009 gagtagatcttgttcggctcgccgccgcacggctggcacccggtgaagtgcgtcacgaac 167068
Query: 368 gggcggcgccacccg 382
|| || |||||||||
Sbjct: 167069 ggccgccgccacccg 167083
Score = 52.0 bits (26), Expect = 4e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 491 ggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctcc 550
|||||||||||| ||||||||||||| ||| |||| | ||||||| | |||| ||||
Sbjct: 167204 ggccgccgctccgccgcctcgtacctcgccgcgatgtcgtcgagccggtcgacgacctcc 167263
Query: 551 atccagtagccctcgaagtagtagcc 576
| |||||| |||| |||| |||||||
Sbjct: 167264 acccagtacccctggaagaagtagcc 167289
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 422 gcgttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcc 470
|||||||| ||| |||||||| | ||||||||| ||||||||||||||
Sbjct: 167129 gcgttcctcgccgccgcgtaccgctcgtgctcccgctccgcgtgccgcc 167177
>gb|AC134053.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0005H02, complete sequence
Length = 144882
Score = 85.7 bits (43), Expect = 3e-014
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccg 307
||||||||||||||||||||||||||||||||| ||| || | | ||||||| | | |
Sbjct: 23050 agcacctggtcgtcggcgaagttgagcgcgcggttcatcccgtcggcgcagctcttcttg 23109
Query: 308 gagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaac 367
|||||| || ||| ||| || | ||||||||| ||||| ||||||||||||||||||
Sbjct: 23110 gagtagatcttgttcggctcgccgccgcacggctggcacccggtgaagtgcgtcacgaac 23169
Query: 368 gggcggcgccacccg 382
|| || |||||||||
Sbjct: 23170 ggccgccgccacccg 23184
Score = 52.0 bits (26), Expect = 4e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 491 ggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctcc 550
|||||||||||| ||||||||||||| ||| |||| | ||||||| | |||| ||||
Sbjct: 23305 ggccgccgctccgccgcctcgtacctcgccgcgatgtcgtcgagccggtcgacgacctcc 23364
Query: 551 atccagtagccctcgaagtagtagcc 576
| |||||| |||| |||| |||||||
Sbjct: 23365 acccagtacccctggaagaagtagcc 23390
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 422 gcgttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcc 470
|||||||| ||| |||||||| | ||||||||| ||||||||||||||
Sbjct: 23230 gcgttcctcgccgccgcgtaccgctcgtgctcccgctccgcgtgccgcc 23278
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 85.7 bits (43), Expect = 3e-014
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccg 307
||||||||||||||||||||||||||||||||| ||| || | | ||||||| | | |
Sbjct: 19448398 agcacctggtcgtcggcgaagttgagcgcgcggttcatcccgtcggcgcagctcttcttg 19448457
Query: 308 gagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaac 367
|||||| || ||| ||| || | ||||||||| ||||| ||||||||||||||||||
Sbjct: 19448458 gagtagatcttgttcggctcgccgccgcacggctggcacccggtgaagtgcgtcacgaac 19448517
Query: 368 gggcggcgccacccg 382
|| || |||||||||
Sbjct: 19448518 ggccgccgccacccg 19448532
Score = 52.0 bits (26), Expect = 4e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 491 ggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctcc 550
|||||||||||| ||||||||||||| ||| |||| | ||||||| | |||| ||||
Sbjct: 19448653 ggccgccgctccgccgcctcgtacctcgccgcgatgtcgtcgagccggtcgacgacctcc 19448712
Query: 551 atccagtagccctcgaagtagtagcc 576
| |||||| |||| |||| |||||||
Sbjct: 19448713 acccagtacccctggaagaagtagcc 19448738
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 422 gcgttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcc 470
|||||||| ||| |||||||| | ||||||||| ||||||||||||||
Sbjct: 19448578 gcgttcctcgccgccgcgtaccgctcgtgctcccgctccgcgtgccgcc 19448626
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 85.7 bits (43), Expect = 3e-014
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccg 307
||||||||||||||||||||||||||||||||| ||| || | | ||||||| | | |
Sbjct: 19607947 agcacctggtcgtcggcgaagttgagcgcgcggttcatcccgtcggcgcagctcttcttg 19608006
Query: 308 gagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaac 367
|||||| || ||| ||| || | ||||||||| ||||| ||||||||||||||||||
Sbjct: 19608007 gagtagatcttgttcggctcgccgccgcacggctggcacccggtgaagtgcgtcacgaac 19608066
Query: 368 gggcggcgccacccg 382
|| || |||||||||
Sbjct: 19608067 ggccgccgccacccg 19608081
Score = 52.0 bits (26), Expect = 4e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 491 ggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctcc 550
|||||||||||| ||||||||||||| ||| |||| | ||||||| | |||| ||||
Sbjct: 19608202 ggccgccgctccgccgcctcgtacctcgccgcgatgtcgtcgagccggtcgacgacctcc 19608261
Query: 551 atccagtagccctcgaagtagtagcc 576
| |||||| |||| |||| |||||||
Sbjct: 19608262 acccagtacccctggaagaagtagcc 19608287
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 422 gcgttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcc 470
|||||||| ||| |||||||| | ||||||||| ||||||||||||||
Sbjct: 19608127 gcgttcctcgccgccgcgtaccgctcgtgctcccgctccgcgtgccgcc 19608175
>gb|AC152840.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0082D04, *** SEQUENCING IN PROGRESS ***, 17
unordered pieces
Length = 152360
Score = 77.8 bits (39), Expect = 8e-012
Identities = 111/135 (82%)
Strand = Plus / Minus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccg 307
||||||||||||||||||||||||||||||||| ||| || | | ||||||| | | |
Sbjct: 19445 agcacctggtcgtcggcgaagttgagcgcgcggttcatcccgtcggcgcagctcttcttg 19386
Query: 308 gagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaac 367
|||||| || ||| ||| || | ||||||||| ||||| |||||||||||||||||
Sbjct: 19385 gagtagatcttgttcggctcgccgccgcacggctggcacccgctgaagtgcgtcacgaac 19326
Query: 368 gggcggcgccacccg 382
|| || |||||||||
Sbjct: 19325 ggccgccgccacccg 19311
>gb|CO435684.1|CO435684 OsMR750 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 536
Score = 65.9 bits (33), Expect = 3e-008
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 418 ggcggcgttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcc 470
|||||||||||| ||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 282 ggcggcgttcctcgccgccgcgtaccgcgcgtgctcccgctccgcgtgccgcc 230
Score = 60.0 bits (30), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 334 gcacggctgacaccccgtgaagtgcgtcacgaacgggcggcgccacccg 382
|||||| || ||||| |||||||||||||||||||| || |||||||||
Sbjct: 382 gcacggntggcacccggtgaagtgcgtcacgaacggccgccgccacccg 334
Score = 48.1 bits (24), Expect = 0.007
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 493 ccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctccat 552
|||||||||| ||||||||||||| ||| |||| | ||||||| | |||| |||||
Sbjct: 204 ccgccgctccgccgcctcgtacctcgccgcgatgtcgtcgagccggtcgacgacctccac 145
Query: 553 ccagtagccctcgaagtagtagcc 576
|||||| |||| |||| |||||||
Sbjct: 144 ccagtaaccctggaagaagtagcc 121
>gb|AACV01023345.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023345, whole
genome shotgun sequence
Length = 5458
Score = 65.9 bits (33), Expect = 3e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 334 gcacggctgacaccccgtgaagtgcgtcacgaacgggcggcgccacccg 382
||||||||| ||||| |||||||||||||||||||| || |||||||||
Sbjct: 5408 gcacggctggcacccggtgaagtgcgtcacgaacggccgccgccacccg 5360
Score = 52.0 bits (26), Expect = 4e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 491 ggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctcc 550
|||||||||||| ||||||||||||| ||| |||| | ||||||| | |||| ||||
Sbjct: 5239 ggccgccgctccgccgcctcgtacctcgccgcgatgtcgtcgagccggtcgacgacctcc 5180
Query: 551 atccagtagccctcgaagtagtagcc 576
| |||||| |||| |||| |||||||
Sbjct: 5179 acccagtacccctggaagaagtagcc 5154
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 422 gcgttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcc 470
|||||||| ||| |||||||| | ||||||||| ||||||||||||||
Sbjct: 5314 gcgttcctcgccgccgcgtaccgctcgtgctcccgctccgcgtgccgcc 5266
>gb|CH401264.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000101 genomic
scaffold, whole genome shotgun sequence
Length = 5106408
Score = 65.9 bits (33), Expect = 3e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 334 gcacggctgacaccccgtgaagtgcgtcacgaacgggcggcgccacccg 382
||||||||| ||||| |||||||||||||||||||| || |||||||||
Sbjct: 2197525 gcacggctggcacccggtgaagtgcgtcacgaacggccgccgccacccg 2197573
Score = 52.0 bits (26), Expect = 4e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 491 ggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctcc 550
|||||||||||| ||||||||||||| ||| |||| | ||||||| | |||| ||||
Sbjct: 2197694 ggccgccgctccgccgcctcgtacctcgccgcgatgtcgtcgagccggtcgacgacctcc 2197753
Query: 551 atccagtagccctcgaagtagtagcc 576
| |||||| |||| |||| |||||||
Sbjct: 2197754 acccagtacccctggaagaagtagcc 2197779
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 422 gcgttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcc 470
|||||||| ||| |||||||| | ||||||||| ||||||||||||||
Sbjct: 2197619 gcgttcctcgccgccgcgtaccgctcgtgctcccgctccgcgtgccgcc 2197667
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 65.9 bits (33), Expect = 3e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 334 gcacggctgacaccccgtgaagtgcgtcacgaacgggcggcgccacccg 382
||||||||| ||||| |||||||||||||||||||| || |||||||||
Sbjct: 16362507 gcacggctggcacccggtgaagtgcgtcacgaacggccgccgccacccg 16362555
Score = 52.0 bits (26), Expect = 4e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 491 ggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctcc 550
|||||||||||| ||||||||||||| ||| |||| | ||||||| | |||| ||||
Sbjct: 16362676 ggccgccgctccgccgcctcgtacctcgccgcgatgtcgtcgagccggtcgacgacctcc 16362735
Query: 551 atccagtagccctcgaagtagtagcc 576
| |||||| |||| |||| |||||||
Sbjct: 16362736 acccagtacccctggaagaagtagcc 16362761
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 422 gcgttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcc 470
|||||||| ||| |||||||| | ||||||||| ||||||||||||||
Sbjct: 16362601 gcgttcctcgccgccgcgtaccgctcgtgctcccgctccgcgtgccgcc 16362649
>dbj|AK110842.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B07, full
insert sequence
Length = 1540
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcg 279
|||||||||| |||||||||||||| ||||||
Sbjct: 1315 agcacctggttgtcggcgaagttgaacgcgcg 1284
>emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb0050K10 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 122901
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcg 279
|||||||||| |||||||||||||| ||||||
Sbjct: 110891 agcacctggttgtcggcgaagttgaacgcgcg 110860
>ref|NT_107151.1| Oryza sativa (japonica cultivar-group)
Length = 901339
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcg 279
|||||||||| |||||||||||||| ||||||
Sbjct: 463494 agcacctggttgtcggcgaagttgaacgcgcg 463525
>gb|AACV01023972.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg023972, whole
genome shotgun sequence
Length = 17692
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcg 279
|||||||||| |||||||||||||| ||||||
Sbjct: 10001 agcacctggttgtcggcgaagttgaacgcgcg 10032
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcg 279
|||||||||| |||||||||||||| ||||||
Sbjct: 2280060 agcacctggttgtcggcgaagttgaacgcgcg 2280091
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcg 279
|||||||||| |||||||||||||| ||||||
Sbjct: 2280060 agcacctggttgtcggcgaagttgaacgcgcg 2280091
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcg 279
|||||||||| |||||||||||||| ||||||
Sbjct: 2432601 agcacctggttgtcggcgaagttgaacgcgcg 2432632
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcg 279
|||||||||| |||||||||||||| ||||||
Sbjct: 2432545 agcacctggttgtcggcgaagttgaacgcgcg 2432576
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 938,491
Number of Sequences: 438736
Number of extensions: 938491
Number of successful extensions: 6136
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5924
Number of HSP's gapped (non-prelim): 212
length of query: 733
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 712
effective length of database: 2,791,206,460
effective search space: 1987338999520
effective search space used: 1987338999520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)