BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493535.2.1
(580 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU078201.1|AU078201 AU078201 Rice panicle at ripening st... 98 6e-018
gb|AU078204.1|AU078204 AU078204 Rice panicle at ripening st... 98 6e-018
gb|CA758816.1|CA758816 BR030027000_PLATE_A05_33_035.ab1 OA ... 98 6e-018
dbj|AP000615.1| Oryza sativa (japonica cultivar-group) geno... 98 6e-018
dbj|AK120826.1| Oryza sativa (japonica cultivar-group) cDNA... 98 6e-018
gb|AACV01005802.1| Oryza sativa (japonica cultivar-group) c... 98 6e-018
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 98 6e-018
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 98 6e-018
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 98 6e-018
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 98 6e-018
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 98 6e-018
ref|XM_493820.1| Oryza sativa (japonica cultivar-group), p... 96 3e-017
gb|AU078217.1|AU078217 AU078217 Rice panicle (between 3cm t... 90 2e-015
gb|C73591.1|C73591 C73591 Rice panicle at ripening stage Or... 78 6e-012
gb|AU078199.1|AU078199 AU078199 Rice panicle at ripening st... 78 6e-012
gb|AU078242.1|AU078242 AU078242 Rice cDNA from immature lea... 76 2e-011
gb|AU172733.1|AU172733 AU172733 Rice panicle at ripening st... 72 4e-010
gb|C19871.1|C19871 C19871 Rice panicle at ripening stage Or... 70 1e-009
gb|C20129.1|C20129 C20129 Rice panicle at ripening stage Or... 70 1e-009
gb|C20296.1|C20296 C20296 Rice panicle at ripening stage Or... 70 1e-009
gb|AU078203.1|AU078203 AU078203 Rice panicle at ripening st... 70 1e-009
gb|AU069800.1|AU069800 AU069800 Rice panicle at flowering s... 64 9e-008
gb|C20167.1|C20167 C20167 Rice panicle at ripening stage Or... 62 4e-007
dbj|AK071283.1| Oryza sativa (japonica cultivar-group) cDNA... 62 4e-007
dbj|AK072380.1| Oryza sativa (japonica cultivar-group) cDNA... 62 4e-007
emb|AL662939.4|OSJN00143 Oryza sativa genomic DNA, chromoso... 62 4e-007
gb|AACV01008884.1| Oryza sativa (japonica cultivar-group) c... 62 4e-007
ref|NT_107203.1| Oryza sativa (japonica cultivar-group) 62 4e-007
gb|CH401188.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|C73298.1|C73298 C73298 Rice panicle at flowering stage O... 50 0.001
gb|C20017.1|C20017 C20017 Rice panicle at ripening stage Or... 48 0.005
gb|AU078249.1|AU078249 AU078249 Rice cDNA from immature lea... 48 0.005
gb|C74088.1|C74088 C74088 Rice panicle shorter than 3cm Ory... 46 0.021
gb|C74193.1|C74193 C74193 Rice panicle shorter than 3cm Ory... 46 0.021
gb|AU029850.1|AU029850 AU029850 Rice cDNA from immature lea... 46 0.021
gb|AU029891.1|AU029891 AU029891 Rice cDNA from immature lea... 46 0.021
gb|AU029936.1|AU029936 AU029936 Rice cDNA from immature lea... 46 0.021
gb|AU029937.1|AU029937 AU029937 Rice cDNA from immature lea... 46 0.021
gb|AU030986.1|AU030986 AU030986 Rice cDNA from immature lea... 46 0.021
gb|AU031269.1|AU031269 AU031269 Rice cDNA from immature lea... 46 0.021
gb|AU031270.1|AU031270 AU031270 Rice cDNA from immature lea... 46 0.021
gb|AU058417.1|AU058417 AU058417 Oryza sativa Nipponbare imm... 46 0.021
gb|AU065605.1|AU065605 AU065605 Rice cDNA from immature lea... 46 0.021
gb|AU077695.1|AU077695 AU077695 Rice cDNA from immature lea... 46 0.021
gb|AU078240.1|AU078240 AU078240 Rice cDNA from immature lea... 46 0.021
gb|AU078246.1|AU078246 AU078246 Rice cDNA from immature lea... 46 0.021
gb|AU078247.1|AU078247 AU078247 Rice cDNA from immature lea... 46 0.021
gb|AU078248.1|AU078248 AU078248 Rice cDNA from immature lea... 46 0.021
gb|CF326545.1|CF326545 JMT1--06-F17.g1 AtJMT-overexpressing... 46 0.021
gb|CV726254.1|CV726254 14Salt--03-M18.b1 Salt treated rice ... 46 0.021
gb|CV726362.1|CV726362 14Salt--03-P05.b1 Salt treated rice ... 46 0.021
gb|AU030016.2|AU030016 AU030016 Rice cDNA from immature lea... 46 0.021
gb|AU065599.2|AU065599 AU065599 Rice cDNA from immature lea... 46 0.021
gb|AU065648.2|AU065648 AU065648 Rice cDNA from immature lea... 46 0.021
dbj|AP004889.1| Oryza sativa (japonica cultivar-group) chro... 46 0.021
dbj|AK121915.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.021
dbj|AP006168.3| Oryza sativa (japonica cultivar-group) geno... 46 0.021
gb|AACV01004969.1| Oryza sativa (japonica cultivar-group) c... 46 0.021
ref|XM_466875.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.021
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 46 0.021
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.021
gb|AU225173.1|AU225173 AU225173 Oryza sativa Koshihikari pi... 44 0.082
gb|AU030034.1|AU030034 AU030034 Rice cDNA from immature lea... 42 0.33
gb|AU094741.1|AU094741 AU094741 Rice panicle shorter than 3... 42 0.33
dbj|AK109710.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.33
dbj|AP004746.3| Oryza sativa (japonica cultivar-group) geno... 42 0.33
dbj|AP005499.3| Oryza sativa (japonica cultivar-group) geno... 42 0.33
dbj|AP005611.3| Oryza sativa (japonica cultivar-group) geno... 42 0.33
emb|AL713929.5|CNS07YP6 Oryza sativa chromosome 12, . BAC O... 42 0.33
dbj|AP005258.4| Oryza sativa (japonica cultivar-group) geno... 42 0.33
dbj|AP005830.4| Oryza sativa (japonica cultivar-group) geno... 42 0.33
ref|NT_107147.1| Oryza sativa (japonica cultivar-group) 42 0.33
dbj|AP003141.3| Oryza sativa (japonica cultivar-group) geno... 42 0.33
gb|AACV01001601.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01004638.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01015826.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01017493.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01024606.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01024607.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.33
ref|XM_466126.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.33
ref|XM_480529.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.33
ref|XM_480530.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.33
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 42 0.33
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 42 0.33
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 42 0.33
dbj|AP003334.4| Oryza sativa (japonica cultivar-group) geno... 42 0.33
gb|CH401274.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CH401229.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CH401222.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.33
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.33
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 42 0.33
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.33
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
>gb|AU078201.1|AU078201 AU078201 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11288_5A, mRNA sequence
Length = 394
Score = 97.6 bits (49), Expect = 6e-018
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 274 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 215
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| ||| |||||||||| | | |||| ||| |||||| ||
Sbjct: 214 ggaagccctccgtgttgcatacgctggcgcagttcgccttgcgggcgcacgggcccttga 155
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 154 accggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 102
>gb|AU078204.1|AU078204 AU078204 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11809_6Z, mRNA sequence
Length = 418
Score = 97.6 bits (49), Expect = 6e-018
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 257 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 198
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| ||| |||||||||| | | |||| ||| |||||| ||
Sbjct: 197 ggaagccctccgtgttgcatacgctggcgcagttcgccttgcgggcgcacgggcccttga 138
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 137 accggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 85
>gb|CA758816.1|CA758816 BR030027000_PLATE_A05_33_035.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030027000_PLATE_A05_33_035.ab1 similar to proteinase
inhibitor - rice gi|1620753|gb|AAB17095.1| (U72942)
proteinase inhibitor [Oryza sativa] [Oryza sativa
(indica cultivar-group)] gi|2829212|gb|AAC00503.1|
(AF04405..., mRNA sequence
Length = 628
Score = 97.6 bits (49), Expect = 6e-018
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 270 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 211
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| ||| |||||||||| | | |||| ||| |||||| ||
Sbjct: 210 ggaagccctccgtgttgcatacgctggcgcagttcgccttgcgggcgcacgggcccttga 151
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 150 accggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 98
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
clone:P0043E01
Length = 154128
Score = 97.6 bits (49), Expect = 6e-018
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 107088 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 107029
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| ||| |||||||||| | | |||| ||| |||||| ||
Sbjct: 107028 ggaagccctccgtgttgcatacgctggcgcagttcgccttgcgggcgcacgggcccttga 106969
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 106968 accggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 106916
>dbj|AK120826.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019E10, full
insert sequence
Length = 540
Score = 97.6 bits (49), Expect = 6e-018
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 290 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 231
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| ||| |||||||||| | | |||| ||| |||||| ||
Sbjct: 230 ggaagccctccgtgttgcatacgctggcgcagttcgccttgcgggcgcacgggcccttga 171
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 170 accggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 118
>gb|AACV01005802.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005802, whole
genome shotgun sequence
Length = 13403
Score = 97.6 bits (49), Expect = 6e-018
Identities = 142/173 (82%)
Strand = Plus / Plus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 10983 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 11042
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| ||| |||||||||| | | |||| ||| |||||| ||
Sbjct: 11043 ggaagccctccgtgttgcatacgctggcgcagttcgccttgcgggcgcacgggcccttga 11102
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 11103 accggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 11155
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 97.6 bits (49), Expect = 6e-018
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 107088 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 107029
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| ||| |||||||||| | | |||| ||| |||||| ||
Sbjct: 107028 ggaagccctccgtgttgcatacgctggcgcagttcgccttgcgggcgcacgggcccttga 106969
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 106968 accggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 106916
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 97.6 bits (49), Expect = 6e-018
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 1703682 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 1703623
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| ||| |||||||||| | | |||| ||| |||||| ||
Sbjct: 1703622 ggaagccctccgtgttgcatacgctggcgcagttcgccttgcgggcgcacgggcccttga 1703563
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 1703562 accggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 1703510
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 97.6 bits (49), Expect = 6e-018
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 1896044 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 1895985
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| ||| |||||||||| | | |||| ||| |||||| ||
Sbjct: 1895984 ggaagccctccgtgttgcatacgctggcgcagttcgccttgcgggcgcacgggcccttga 1895925
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 1895924 accggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 1895872
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 97.6 bits (49), Expect = 6e-018
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 1694623 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 1694564
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| ||| |||||||||| | | |||| ||| |||||| ||
Sbjct: 1694563 ggaagccctccgtgttgcatacgctggcgcagttcgccttgcgggcgcacgggcccttga 1694504
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 1694503 accggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 1694451
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 97.6 bits (49), Expect = 6e-018
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 1694625 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 1694566
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| ||| |||||||||| | | |||| ||| |||||| ||
Sbjct: 1694565 ggaagccctccgtgttgcatacgctggcgcagttcgccttgcgggcgcacgggcccttga 1694506
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 1694505 accggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 1694453
>ref|XM_493820.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 246
Score = 95.6 bits (48), Expect = 3e-017
Identities = 141/172 (81%)
Strand = Plus / Minus
Query: 254 tcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggg 313
|||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| ||||
Sbjct: 246 tcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcggg 187
Query: 314 gaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaa 373
||| ||||| || |||| ||| |||||||||| | | |||| ||| |||||| |||
Sbjct: 186 gaagccctccgtgttgcatacgctggcgcagttcgccttgcgggcgcacgggcccttgaa 127
Query: 374 cctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
|| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 126 ccggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 75
>gb|AU078217.1|AU078217 AU078217 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E40454_5A, mRNA sequence
Length = 410
Score = 89.7 bits (45), Expect = 2e-015
Identities = 142/173 (82%), Gaps = 1/173 (0%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 278 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 219
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| |||| ||||||||| | | |||| ||| |||||| ||
Sbjct: 218 ggaagccctccgtgttgcatacgt-ggcgcagttcgccttgcgggcgcacgggcccttga 160
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 159 accggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 107
>gb|C73591.1|C73591 C73591 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11448_2A, mRNA sequence
Length = 289
Score = 77.8 bits (39), Expect = 6e-012
Identities = 140/173 (80%), Gaps = 1/173 (0%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 279 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 220
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| |||| |||| |||| | | |||| ||| |||||| ||
Sbjct: 219 ggaagccctccgtgttgcatacgt-ggcgnagttcgccttgcgggcgcacgggcccttga 161
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||||||||||| || |||||||
Sbjct: 160 accggtggctctgcgactcgcacgtccgagcctccgccaccatcancggcccg 108
>gb|AU078199.1|AU078199 AU078199 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11151_4Z, mRNA sequence
Length = 426
Score = 77.8 bits (39), Expect = 6e-012
Identities = 139/173 (80%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 274 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 215
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| ||| ||||||| || | | |||| ||| |||||| ||
Sbjct: 214 ggaagccctccgtgttgcatacgctggcgcanttcgccttgcgggcgcacgggcccttga 155
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| |||||||||||||| ||||||||| |||| || |||| ||||||||||
Sbjct: 154 accggtggctctgcgactcgcacgtccgagccttcgncaccatcaccggcccg 102
>gb|AU078242.1|AU078242 AU078242 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61139_2Z, mRNA sequence
Length = 489
Score = 75.8 bits (38), Expect = 2e-011
Identities = 138/173 (79%)
Strand = Plus / Minus
Query: 253 atcagtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccgg 312
||||| ||||| || ||||||| | |||||||||||||| |||| |||| |||| |||
Sbjct: 315 atcaggggcagggcttggtgcacatgcagcggcggcggacgccgtggcagtagccgtcgg 256
Query: 313 ggaacccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccgga 372
|||| ||||| || |||| ||| |||||||||| | | |||| | | |||||| ||
Sbjct: 255 ggaagccctccgtgttgcanacgctggcgcagttcgccttgcgggcgnacgggcccttga 196
Query: 373 acctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||| | |||||||||||| | ||||||| |||||||||||| |||||| |||
Sbjct: 195 accggnggctctgcgactcgnacgtccgagcctccgccaccatcaccggnccg 143
>gb|AU172733.1|AU172733 AU172733 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11619, mRNA sequence
Length = 387
Score = 71.9 bits (36), Expect = 4e-010
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 283 ggcggcggaagccgcggcacctgccgccggggaacccctcggtcctgcagacgttggcgc 342
||||||||| |||| |||| |||| ||||||| ||||| || |||| ||| ||||||
Sbjct: 216 ggcggcggacgccgtggcagtagccgtcggggaagccctccgtgttgcatacgctggcgc 157
Query: 343 agttggaccggcggaggcaggggccccggaacctgtggctctgcgactggcacgtccgcg 402
|||| | | |||| ||| |||||| ||||| |||||| ||||||| ||||||||| |
Sbjct: 156 agttcgccttgcgggcgcacgggcccttgaaccggtggctntgcgactcgcacgtccgag 97
Query: 403 cctccgccaccgccaccggcccg 425
||||||||||| ||||||||||
Sbjct: 96 cctccgccaccatcaccggcccg 74
>gb|C19871.1|C19871 C19871 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11151_2A, mRNA sequence
Length = 333
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 170 gaaccggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 116
>gb|C20129.1|C20129 C20129 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11560_1A, mRNA sequence
Length = 307
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 152 gaaccggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 98
>gb|C20296.1|C20296 C20296 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11809_1A, mRNA sequence
Length = 375
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 139 gaaccggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 85
>gb|AU078203.1|AU078203 AU078203 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11588_2A, mRNA sequence
Length = 407
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 157 gaaccggtggctctgcgactcgcacgtccgagcctccgccaccatcaccggcccg 103
>gb|AU069800.1|AU069800 AU069800 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3445_1A, mRNA sequence
Length = 422
Score = 63.9 bits (32), Expect = 9e-008
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||||| |||||||||||| | ||||||||| |||||||||||| ||||||||||
Sbjct: 160 gaaccggtggctctgcgantcgcacgtccgagcctccgccaccatcaccggcccg 106
>gb|C20167.1|C20167 C20167 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11620_1A, mRNA sequence
Length = 303
Score = 61.9 bits (31), Expect = 4e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||||| |||||||||||||| ||||||||| |||||||| ||| ||||||||||
Sbjct: 157 gaaccggtggctctgcgactcgcacgtccgagcctccgcaaccatcaccggcccg 103
>dbj|AK071283.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085D09, full
insert sequence
Length = 576
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 278 gcagcggcggcggaagccgcggcacctgccgccggggaacccctcggtcctgcagacgtt 337
||||||||| |||||||||| |||| |||| |||| ||| ||||| ||| ||| |||||
Sbjct: 325 gcagcggcgccggaagccgctgcacttgcctccggagaagccctcagtcaggcacacgtt 266
Query: 338 ggcgcagttgg 348
|||||||||||
Sbjct: 265 ggcgcagttgg 255
>dbj|AK072380.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069F04, full
insert sequence
Length = 2832
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 278 gcagcggcggcggaagccgcggcacctgccgccggggaacccctcggtcctgcagacgtt 337
||||||||| |||||||||| |||| |||| |||| ||| ||||| ||| ||| |||||
Sbjct: 2581 gcagcggcgccggaagccgctgcacttgcctccggagaagccctcagtcaggcacacgtt 2522
Query: 338 ggcgcagttgg 348
|||||||||||
Sbjct: 2521 ggcgcagttgg 2511
>emb|AL662939.4|OSJN00143 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013J13,
complete sequence
Length = 137572
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 278 gcagcggcggcggaagccgcggcacctgccgccggggaacccctcggtcctgcagacgtt 337
||||||||| |||||||||| |||| |||| |||| ||| ||||| ||| ||| |||||
Sbjct: 42192 gcagcggcgccggaagccgctgcacttgcctccggagaagccctcagtcaggcacacgtt 42251
Query: 338 ggcgcagttgg 348
|||||||||||
Sbjct: 42252 ggcgcagttgg 42262
>gb|AACV01008884.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008884, whole
genome shotgun sequence
Length = 5990
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 278 gcagcggcggcggaagccgcggcacctgccgccggggaacccctcggtcctgcagacgtt 337
||||||||| |||||||||| |||| |||| |||| ||| ||||| ||| ||| |||||
Sbjct: 1015 gcagcggcgccggaagccgctgcacttgcctccggagaagccctcagtcaggcacacgtt 956
Query: 338 ggcgcagttgg 348
|||||||||||
Sbjct: 955 ggcgcagttgg 945
>ref|NT_107203.1| Oryza sativa (japonica cultivar-group)
Length = 2359875
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 278 gcagcggcggcggaagccgcggcacctgccgccggggaacccctcggtcctgcagacgtt 337
||||||||| |||||||||| |||| |||| |||| ||| ||||| ||| ||| |||||
Sbjct: 719444 gcagcggcgccggaagccgctgcacttgcctccggagaagccctcagtcaggcacacgtt 719503
Query: 338 ggcgcagttgg 348
|||||||||||
Sbjct: 719504 ggcgcagttgg 719514
>gb|CH401188.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000025 genomic
scaffold, whole genome shotgun sequence
Length = 1620156
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 278 gcagcggcggcggaagccgcggcacctgccgccggggaacccctcggtcctgcagacgtt 337
||||||||| |||||||||| |||| |||| |||| ||| ||||| ||| ||| |||||
Sbjct: 1021620 gcagcggcgccggaagccgctgcacttgcctccggagaagccctcagtcaggcacacgtt 1021679
Query: 338 ggcgcagttgg 348
|||||||||||
Sbjct: 1021680 ggcgcagttgg 1021690
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 278 gcagcggcggcggaagccgcggcacctgccgccggggaacccctcggtcctgcagacgtt 337
||||||||| |||||||||| |||| |||| |||| ||| ||||| ||| ||| |||||
Sbjct: 6325643 gcagcggcgccggaagccgctgcacttgcctccggagaagccctcagtcaggcacacgtt 6325584
Query: 338 ggcgcagttgg 348
|||||||||||
Sbjct: 6325583 ggcgcagttgg 6325573
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 278 gcagcggcggcggaagccgcggcacctgccgccggggaacccctcggtcctgcagacgtt 337
||||||||| |||||||||| |||| |||| |||| ||| ||||| ||| ||| |||||
Sbjct: 6018795 gcagcggcgccggaagccgctgcacttgcctccggagaagccctcagtcaggcacacgtt 6018854
Query: 338 ggcgcagttgg 348
|||||||||||
Sbjct: 6018855 ggcgcagttgg 6018865
>gb|C73298.1|C73298 C73298 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3682_1A, mRNA sequence
Length = 462
Score = 50.1 bits (25), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 278 gcagcggcggcggaagccgcggcacctgccgccggggaacccctcggtcctgcagacgtt 337
||||||||| |||||||||| | | |||| |||| ||| ||||| ||| ||| |||||
Sbjct: 253 gcagcggcgccggaagccgctgnncttgcctccggagaagccctcagtcaggcacacgtt 194
Query: 338 ggcgcagttgg 348
|||||||||||
Sbjct: 193 ggcgcagttgg 183
>gb|C20017.1|C20017 C20017 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11387_1A, mRNA sequence
Length = 374
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/55 (87%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccg 425
||||| |||||||| ||||| ||||||||| | |||||||||| ||||||||||
Sbjct: 153 gaaccggtggctct-cgactcgcacgtccgagnctccgccaccatcaccggcccg 100
>gb|AU078249.1|AU078249 AU078249 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61775_2Z, mRNA sequence
Length = 469
Score = 48.1 bits (24), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 128 gccgtcggggaagctctccgtcctgcanacgttggcgcagttg 86
>gb|C74088.1|C74088 C74088 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30363_1A, mRNA sequence
Length = 465
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 243 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 201
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccacc 413
||||||||||||||||||| |||| || |||||||||||||
Sbjct: 177 gaacctgtggctctgcgacaggcagtgcctcgcctccgccacc 135
>gb|C74193.1|C74193 C74193 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30618_2A, mRNA sequence
Length = 331
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 217 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 175
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccacc 413
||||||||||||||||||| |||| || |||||||||||||
Sbjct: 152 gaacctgtggctctgcgacaggcagtgcctcgcctccgccacc 110
>gb|AU029850.1|AU029850 AU029850 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50028_1A, mRNA sequence
Length = 414
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 260 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 218
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccacc 413
||||||||||||||||||| |||| || |||||||||||||
Sbjct: 195 gaacctgtggctctgcgacaggcagtgcctcgcctccgccacc 153
>gb|AU029891.1|AU029891 AU029891 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50130_1A, mRNA sequence
Length = 358
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 265 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 223
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccacc 413
||||||||||||||||||| |||| || |||||||||||||
Sbjct: 200 gaacctgtggctctgcgacaggcagtgcctcgcctccgccacc 158
>gb|AU029936.1|AU029936 AU029936 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50284_1A, mRNA sequence
Length = 460
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 223 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 181
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccacc 413
||||||||||||||||||| |||| || |||||||||||||
Sbjct: 158 gaacctgtggctctgcgacaggcagtgcctcgcctccgccacc 116
>gb|AU029937.1|AU029937 AU029937 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50284_2Z, mRNA sequence
Length = 464
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 100 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 58
>gb|AU030986.1|AU030986 AU030986 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60529_2Z, mRNA sequence
Length = 591
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 249 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 207
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccacc 413
||||||||||||||||||| |||| || |||||||||||||
Sbjct: 183 gaacctgtggctctgcgacaggcagtgcctcgcctccgccacc 141
>gb|AU031269.1|AU031269 AU031269 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61252_2Z, mRNA sequence
Length = 477
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 100 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 58
>gb|AU031270.1|AU031270 AU031270 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61252_3A, mRNA sequence
Length = 346
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 233 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 191
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccacc 413
||||||||||||||||||| |||| || |||||||||||||
Sbjct: 167 gaacctgtggctctgcgacaggcagtgcctcgcctccgccacc 125
>gb|AU058417.1|AU058417 AU058417 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E51109_1A, mRNA
sequence
Length = 421
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccacc 413
||||||||||||||||||| |||| || |||||||||||||
Sbjct: 191 gaacctgtggctctgcgacaggcagtgcctcgcctccgccacc 149
>gb|AU065605.1|AU065605 AU065605 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50527_1A, mRNA sequence
Length = 422
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 242 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 200
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccacc 413
||||||||||||||||||| |||| || |||||||||||||
Sbjct: 177 gaacctgtggctctgcgacaggcagtgcctcgcctccgccacc 135
>gb|AU077695.1|AU077695 AU077695 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50028_2Z, mRNA sequence
Length = 450
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 108 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 66
Score = 44.1 bits (22), Expect = 0.082
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccac 412
||||||||||||||||||| |||| || ||||||||||||
Sbjct: 42 gaacctgtggctctgcgacaggcagtgcctcgcctccgccac 1
>gb|AU078240.1|AU078240 AU078240 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60529_1A, mRNA sequence
Length = 427
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 264 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 222
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccacc 413
||||||||||||||||||| |||| || |||||||||||||
Sbjct: 199 gaacctgtggctctgcgacaggcagtgcctcgcctccgccacc 157
>gb|AU078246.1|AU078246 AU078246 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61655_3A, mRNA sequence
Length = 605
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 264 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 222
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccacc 413
||||||||||||||||||| |||| || |||||||||||||
Sbjct: 199 gaacctgtggctctgcgacaggcagtgcctcgcctccgccacc 157
>gb|AU078247.1|AU078247 AU078247 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61767_1A, mRNA sequence
Length = 475
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 265 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 223
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccacc 413
||||||||||||||||||| |||| || |||||||||||||
Sbjct: 199 gaacctgtggctctgcgacaggcagtgcctcgcctccgccacc 157
>gb|AU078248.1|AU078248 AU078248 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61775_1A, mRNA sequence
Length = 526
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttg 347
|||| ||||||| | ||| |||||||| |||||||||||||||
Sbjct: 264 gccgtcggggaagctctccgtcctgcacacgttggcgcagttg 222
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccacc 413
||||||||||||||||||| |||| || |||||||||||||
Sbjct: 199 gaacctgtggctctgcgacaggcagtgcctcgcctccgccacc 157
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,307,787
Number of Sequences: 438736
Number of extensions: 1307787
Number of successful extensions: 87618
Number of sequences better than 0.5: 104
Number of HSP's better than 0.5 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83233
Number of HSP's gapped (non-prelim): 4346
length of query: 580
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 559
effective length of database: 2,791,206,460
effective search space: 1560284411140
effective search space used: 1560284411140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)