BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493531.2.1
(1061 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK062225.1| Oryza sativa (japonica cultivar-group) cDNA... 321 4e-085
dbj|AK066414.1| Oryza sativa (japonica cultivar-group) cDNA... 321 4e-085
ref|XM_473658.1| Oryza sativa (japonica cultivar-group), p... 321 4e-085
gb|AU069455.1|AU069455 AU069455 Rice callus Oryza sativa (j... 319 2e-084
gb|AU069463.1|AU069463 AU069463 Rice callus Oryza sativa (j... 303 1e-079
gb|AU069357.1|AU069357 AU069357 Rice callus Oryza sativa (j... 258 5e-066
gb|AACV01010380.1| Oryza sativa (japonica cultivar-group) c... 216 2e-053
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 216 2e-053
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 216 2e-053
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 216 2e-053
emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromoso... 216 2e-053
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 216 2e-053
gb|CB000860.1|CB000860 S345K_B12 Rice cold stress germinati... 78 1e-011
gb|CA756483.1|CA756483 BR030043000_PLATE_E06_45_049.ab1 OA ... 56 4e-005
dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AP004587.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP005544.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chro... 48 0.010
dbj|AK058491.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.010
dbj|AK101940.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.010
dbj|AK111100.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.010
gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic seque... 48 0.010
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 48 0.010
dbj|AP003539.3| Oryza sativa (japonica cultivar-group) geno... 48 0.010
gb|AACV01000580.1| Oryza sativa (japonica cultivar-group) c... 48 0.010
gb|AACV01002031.1| Oryza sativa (japonica cultivar-group) c... 48 0.010
gb|AACV01014579.1| Oryza sativa (japonica cultivar-group) c... 48 0.010
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 48 0.010
ref|NM_192452.1| Oryza sativa (japonica cultivar-group), p... 48 0.010
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 48 0.010
dbj|AP003294.2| Oryza sativa (japonica cultivar-group) geno... 48 0.010
dbj|AP003291.3| Oryza sativa (japonica cultivar-group) geno... 48 0.010
ref|NM_188790.1| Oryza sativa (japonica cultivar-group), p... 48 0.010
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 48 0.010
dbj|AP002865.1| Oryza sativa (japonica cultivar-group) geno... 48 0.010
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 48 0.010
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 48 0.010
gb|AQ327394.1|AQ327394 nbxb0040J22r CUGI Rice BAC Library O... 46 0.039
gb|CZ593858.1|CZ593858 UCDRDs742_5.3 UCD RDs Rice Insertion... 46 0.039
gb|CA754591.1|CA754591 BR030002000_PLATE_D11_84_093.ab1 OA ... 46 0.039
gb|CF292565.1|CF292565 30DGS--01-G24.b1 Rice leaf plasmid c... 46 0.039
gb|CF293403.1|CF293403 30DGS--02-J07.b1 Rice leaf plasmid c... 46 0.039
gb|CF293561.1|CF293561 30DGS--02-M17.g1 Rice leaf plasmid c... 46 0.039
gb|CF333111.1|CF333111 JMT--01-O01.b1 AtJMT-overexpressing ... 46 0.039
gb|CV722931.1|CV722931 root--02-A02.g1 Rice root lambda pha... 46 0.039
gb|CV723648.1|CV723648 root--04-E23.g1 Rice root lambda pha... 46 0.039
gb|CV723827.1|CV723827 root--04-O12.g1 Rice root lambda pha... 46 0.039
gb|CV724210.1|CV724210 root--06-D07.g1 Rice root lambda pha... 46 0.039
gb|CV724388.1|CV724388 root--06-O02.g1 Rice root lambda pha... 46 0.039
gb|CV727194.1|CV727194 14Salt--05-D15.b1 Salt treated rice ... 46 0.039
gb|CV728018.1|CV728018 14Salt--06-H19.b1 Salt treated rice ... 46 0.039
gb|AU033295.2|AU033295 AU033295 Rice shoot Oryza sativa (ja... 46 0.039
emb|AL607096.1|OSJN01004 Oryza sativa (japonica cultivar-gr... 46 0.039
dbj|AP004569.1| Oryza sativa (japonica cultivar-group) chro... 46 0.039
dbj|AK073355.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.039
dbj|AK104400.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.039
dbj|AK119342.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.039
dbj|AK120534.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.039
gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 ... 46 0.039
gb|AC136842.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|AC114828.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
dbj|AP003984.3| Oryza sativa (japonica cultivar-group) geno... 46 0.039
dbj|AP005845.2| Oryza sativa (japonica cultivar-group) geno... 46 0.039
dbj|AP004054.3| Oryza sativa (japonica cultivar-group) geno... 46 0.039
ref|NT_107132.1| Oryza sativa (japonica cultivar-group) 46 0.039
gb|AACV01005560.1| Oryza sativa (japonica cultivar-group) c... 46 0.039
gb|AACV01007011.1| Oryza sativa (japonica cultivar-group) c... 46 0.039
gb|AACV01023528.1| Oryza sativa (japonica cultivar-group) c... 46 0.039
ref|XM_465991.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.039
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 46 0.039
ref|NT_107184.1| Oryza sativa (japonica cultivar-group) 46 0.039
dbj|AP004401.5| Oryza sativa (japonica cultivar-group) geno... 46 0.039
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 46 0.039
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 46 0.039
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|AC146908.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.039
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.039
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 46 0.039
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 46 0.039
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|AU162621.1|AU162621 AU162621 Rice cDNA from young root O... 44 0.15
gb|CB642338.1|CB642338 OSJNEb02H16.f OSJNEb Oryza sativa (j... 44 0.15
dbj|AP004021.1| Oryza sativa (japonica cultivar-group) chro... 44 0.15
dbj|AP004175.2| Oryza sativa (japonica cultivar-group) chro... 44 0.15
dbj|AK070778.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
dbj|AK099496.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC O... 44 0.15
gb|AC027661.1| Oryza sativa (japonica cultivar-group) BAC n... 44 0.15
gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbar... 44 0.15
gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbar... 44 0.15
gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 gen... 44 0.15
gb|AC129225.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|AC129224.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
emb|AL606597.4|OSJN00042 Oryza sativa genomic DNA, chromoso... 44 0.15
gb|AC123527.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
dbj|AP005066.2| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP007203.2| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP004346.2| Oryza sativa (japonica cultivar-group) geno... 44 0.15
gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 ... 44 0.15
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_107090.1| Oryza sativa (japonica cultivar-group) chr... 44 0.15
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_107135.1| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_107208.1| Oryza sativa (japonica cultivar-group) 44 0.15
emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC O... 44 0.15
dbj|AP003523.3| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP003571.4| Oryza sativa (japonica cultivar-group) geno... 44 0.15
gb|AC151480.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
dbj|AP002871.2| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP002845.3| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP003206.4| Oryza sativa (japonica cultivar-group) geno... 44 0.15
gb|AACV01000031.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01000447.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01000830.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01004434.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01005045.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01006561.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01007261.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01008179.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01008801.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01010021.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01014657.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01019015.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01021525.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01022328.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01024962.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01024996.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01027015.1| Oryza sativa (japonica cultivar-group) C... 44 0.15
gb|AC136221.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
ref|NM_184850.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.15
ref|NM_189224.1| Oryza sativa (japonica cultivar-group), p... 44 0.15
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 44 0.15
ref|XM_465895.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.15
ref|XM_467070.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.15
ref|XM_474931.1| Oryza sativa (japonica cultivar-group), p... 44 0.15
ref|NT_107076.1| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_107174.1| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_107204.1| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 44 0.15
dbj|AP006058.3| Oryza sativa (japonica cultivar-group) geno... 44 0.15
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 44 0.15
dbj|AP001633.2| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP003104.2| Oryza sativa (japonica cultivar-group) geno... 44 0.15
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 44 0.15
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401280.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401231.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401185.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 44 0.15
gb|AC092778.5| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|AC136447.4| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
>dbj|AK062225.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C11, full
insert sequence
Length = 1162
Score = 321 bits (162), Expect = 4e-085
Identities = 201/214 (93%)
Strand = Plus / Plus
Query: 184 cggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccgaccc 243
|||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct: 196 cggctcctccgccctctccgagtggcgctccgccaaggcctcctactacgccgccgaccc 255
Query: 244 cgaagacgccatcggtggggcgtgcgggttcggggatctggggaaacacggctacgggat 303
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 256 ggaagacgccatcggtggcgcgtgcgggttcggggatctggggaagcacgggtacgggat 315
Query: 304 ggcgacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgcta 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 316 ggcgacggtggggctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgcta 375
Query: 364 cgaggtcaagtgcgtcgaggacctcaagcactgc 397
|||||| |||||||| || ||||||||| |||||
Sbjct: 376 cgaggtgaagtgcgtggatgacctcaagtactgc 409
Score = 137 bits (69), Expect = 1e-029
Identities = 267/333 (80%)
Strand = Plus / Plus
Query: 422 atgcccatccagtaccgccgtgttaagtgcctccgcgaaggtggtgtgaggttctccgtc 481
|||||||||||||||||||| || || || || || || ||||||||| | ||| | |||
Sbjct: 566 atgcccatccagtaccgccgcgtcaactgtcttcgtgatggtggtgtgcgattcgcagtc 625
Query: 482 aacggtcggcacttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatgtt 541
||||| ||||||| | ||||||||||| ||||| || ||||| || || |||||
Sbjct: 626 gctggtcgaggcttcttcctgacagtcctaattagcaatgtcggtggtgctggcgatgtc 685
Query: 542 aggtctgtgaagatcaaaggaacggagctaggatggctccctatgggccgcaactggggc 601
| || ||||||||||||||||||||| || |||||| | |||||||||||||||||
Sbjct: 686 cgatcagtgaagatcaaaggaacggagtccggttggctctcgatgggccgcaactggggg 745
Query: 602 caggtgtggcacatcaactgtgacatgaggggacagcctctatcgtttgagctcagctca 661
||| | ||||||||||||| ||| | |||||||||||||| || || ||||||| ||||
Sbjct: 746 cagatatggcacatcaactctgatttcaggggacagcctctctccttcgagctcacctca 805
Query: 662 agcgatagcaagacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggcaag 721
|| ||| | || || |||||| | |||||| || || ||||| ||||| ||||||||
Sbjct: 806 agtgatggaaaaacattgaccaactacaacgtggtccctaaggagtgggacttcggcaaa 865
Query: 722 acatacacggggaagcagtttcttctgtagaga 754
|||||||| || |||||||| || || ||||||
Sbjct: 866 acatacactggcaagcagttcctgctctagaga 898
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 394 ctgcaacccgcccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||||||||||||| | ||||||||||
Sbjct: 490 ctgcaacccgcccaaccaccatttcctcctccccatccagt 530
Score = 56.0 bits (28), Expect = 4e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 942 agaggcttgatgtatcattcaaaatagaaggc 973
|||||||||||||| |||||||||||||||||
Sbjct: 1105 agaggcttgatgtaccattcaaaatagaaggc 1136
>dbj|AK066414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067I11, full
insert sequence
Length = 3105
Score = 321 bits (162), Expect = 4e-085
Identities = 201/214 (93%)
Strand = Plus / Plus
Query: 184 cggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccgaccc 243
|||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct: 197 cggctcctccgccctctccgagtggcgctccgccaaggcctcctactacgccgccgaccc 256
Query: 244 cgaagacgccatcggtggggcgtgcgggttcggggatctggggaaacacggctacgggat 303
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 257 ggaagacgccatcggtggcgcgtgcgggttcggggatctggggaagcacgggtacgggat 316
Query: 304 ggcgacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgcta 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 317 ggcgacggtggggctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgcta 376
Query: 364 cgaggtcaagtgcgtcgaggacctcaagcactgc 397
|||||| |||||||| || ||||||||| |||||
Sbjct: 377 cgaggtgaagtgcgtggatgacctcaagtactgc 410
Score = 131 bits (66), Expect = 8e-028
Identities = 213/262 (81%)
Strand = Plus / Plus
Query: 493 cttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatgttaggtctgtgaa 552
||||||| | ||||||||||| ||||| || ||||| || || ||||| | || |||||
Sbjct: 2618 cttcttcctgacagtcctaattagcaatgtcggtggtgctggcgatgtccgatcagtgaa 2677
Query: 553 gatcaaaggaacggagctaggatggctccctatgggccgcaactggggccaggtgtggca 612
|||||||||||||||| || |||||| | ||||||||||||||||| ||| | |||||
Sbjct: 2678 gatcaaaggaacggagtccggttggctctcgatgggccgcaactgggggcagatatggca 2737
Query: 613 catcaactgtgacatgaggggacagcctctatcgtttgagctcagctcaagcgatagcaa 672
|||||||| ||| | |||||||||||||| || || ||||||| |||||| ||| | ||
Sbjct: 2738 catcaactctgatttcaggggacagcctctctccttcgagctcacctcaagtgatggaaa 2797
Query: 673 gacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggcaagacatacacggg 732
|| |||||| | |||||| || || ||||| ||||| |||||||| |||||||| ||
Sbjct: 2798 aacattgaccaactacaacgtggtccctaaggagtgggacttcggcaaaacatacactgg 2857
Query: 733 gaagcagtttcttctgtagaga 754
|||||||| || || ||||||
Sbjct: 2858 caagcagttcctgctctagaga 2879
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 394 ctgcaacccgcccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||||||||||||| | ||||||||||
Sbjct: 491 ctgcaacccgcccaaccaccatttcctcctccccatccagt 531
>ref|XM_473658.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 774
Score = 321 bits (162), Expect = 4e-085
Identities = 201/214 (93%)
Strand = Plus / Plus
Query: 184 cggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccgaccc 243
|||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct: 75 cggctcctccgccctctccgagtggcgctccgccaaggcctcctactacgccgccgaccc 134
Query: 244 cgaagacgccatcggtggggcgtgcgggttcggggatctggggaaacacggctacgggat 303
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 135 ggaagacgccatcggtggcgcgtgcgggttcggggatctggggaagcacgggtacgggat 194
Query: 304 ggcgacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgcta 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 195 ggcgacggtggggctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgcta 254
Query: 364 cgaggtcaagtgcgtcgaggacctcaagcactgc 397
|||||| |||||||| || ||||||||| |||||
Sbjct: 255 cgaggtgaagtgcgtggatgacctcaagtactgc 288
Score = 135 bits (68), Expect = 5e-029
Identities = 257/320 (80%)
Strand = Plus / Plus
Query: 422 atgcccatccagtaccgccgtgttaagtgcctccgcgaaggtggtgtgaggttctccgtc 481
|||||||||||||||||||| || || || || || || ||||||||| | ||| | |||
Sbjct: 445 atgcccatccagtaccgccgcgtcaactgtcttcgtgatggtggtgtgcgattcgcagtc 504
Query: 482 aacggtcggcacttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatgtt 541
||||| ||||||| | ||||||||||| ||||| || ||||| || || |||||
Sbjct: 505 gctggtcgaagcttcttcctgacagtcctaattagcaatgtcggtggtgctggcgatgtc 564
Query: 542 aggtctgtgaagatcaaaggaacggagctaggatggctccctatgggccgcaactggggc 601
| || ||||||||||||||||||||| || |||||| | |||||||||||||||||
Sbjct: 565 cgatcagtgaagatcaaaggaacggagtccggttggctctcgatgggccgcaactggggg 624
Query: 602 caggtgtggcacatcaactgtgacatgaggggacagcctctatcgtttgagctcagctca 661
||| | ||||||||||||| ||| | |||||||||||||| || || ||||||| ||||
Sbjct: 625 cagatatggcacatcaactctgatttcaggggacagcctctctccttcgagctcacctca 684
Query: 662 agcgatagcaagacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggcaag 721
|| ||| | || || |||||| | |||||| || || ||||| ||||| ||||||||
Sbjct: 685 agtgatggaaaaacattgaccaactacaacgtggtccctaaggagtgggacttcggcaaa 744
Query: 722 acatacacggggaagcagtt 741
|||||||| || ||||||||
Sbjct: 745 acatacactggcaagcagtt 764
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 394 ctgcaacccgcccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||||||||||||| | ||||||||||
Sbjct: 369 ctgcaacccgcccaaccaccatttcctcctccccatccagt 409
>gb|AU069455.1|AU069455 AU069455 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61825_13A, mRNA sequence
Length = 356
Score = 319 bits (161), Expect = 2e-084
Identities = 200/213 (93%)
Strand = Plus / Plus
Query: 184 cggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccgaccc 243
|||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct: 79 cggctcctccgccctctccgagtggcgctccgccaaggcctcctactacgccgccgaccc 138
Query: 244 cgaagacgccatcggtggggcgtgcgggttcggggatctggggaaacacggctacgggat 303
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 139 ggaagacgccatcggtggcgcgtgcgggttcggggatctggggaagcacgggtacgggat 198
Query: 304 ggcgacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgcta 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 199 ggcgacggtggggctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgcta 258
Query: 364 cgaggtcaagtgcgtcgaggacctcaagcactg 396
|||||| |||||||| || ||||||||| ||||
Sbjct: 259 cgaggtgaagtgcgtggatgacctcaagtactg 291
>gb|AU069463.1|AU069463 AU069463 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61881_1A, mRNA sequence
Length = 289
Score = 303 bits (153), Expect = 1e-079
Identities = 195/208 (93%), Gaps = 1/208 (0%)
Strand = Plus / Plus
Query: 184 cggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccgaccc 243
|||||||||||| |||||||| |||||| |||| ||||| ||||||||||||||||||||
Sbjct: 79 cggctcctccgccctctccgagtggcgctccgc-aaggcctcctactacgccgccgaccc 137
Query: 244 cgaagacgccatcggtggggcgtgcgggttcggggatctggggaaacacggctacgggat 303
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 138 ggaagacgccatcggtggcgcgtgcgggttcggggatctggggaagcacgggtacgggat 197
Query: 304 ggcgacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgcta 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 198 ggcgacggtggggctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgcta 257
Query: 364 cgaggtcaagtgcgtcgaggacctcaag 391
|||||| |||||||| || |||||||||
Sbjct: 258 cgaggtgaagtgcgtngatgacctcaag 285
>gb|AU069357.1|AU069357 AU069357 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60811_11A, mRNA sequence
Length = 269
Score = 258 bits (130), Expect = 5e-066
Identities = 174/191 (91%)
Strand = Plus / Plus
Query: 184 cggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccgaccc 243
|||||||||||| ||| |||| | |||| |||||||||| ||||||||||||||||||||
Sbjct: 79 cggctcctccgccctcnccgagtngcgctccgccaaggcctcctactacgccgccgaccc 138
Query: 244 cgaagacgccatcggtggggcgtgcgggttcggggatctggggaaacacggctacgggat 303
|||||| |||||||||| ||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 139 ggaagacnccatcggtggcgcgtgcgggttcggggatcnngggaagcacgggtacgggat 198
Query: 304 ggcgacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgcta 363
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 199 ngcgacggtggggctgagcacngcgctgttcgagcgcggcgcggcgtgcggcggctgcta 258
Query: 364 cgaggtcaagt 374
|||||| ||||
Sbjct: 259 cgaggtgaagt 269
>gb|AACV01010380.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010380, whole
genome shotgun sequence
Length = 39984
Score = 216 bits (109), Expect = 2e-053
Identities = 133/141 (94%)
Strand = Plus / Plus
Query: 257 ggtggggcgtgcgggttcggggatctggggaaacacggctacgggatggcgacggtgggg 316
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 7664 ggtggcgcgtgcgggttcggggatctggggaagcacgggtacgggatggcgacggtgggg 7723
Query: 317 ctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtgc 376
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7724 ctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgctacgaggtgaagtgc 7783
Query: 377 gtcgaggacctcaagcactgc 397
|| || ||||||||| |||||
Sbjct: 7784 gtggatgacctcaagtactgc 7804
Score = 131 bits (66), Expect = 8e-028
Identities = 213/262 (81%)
Strand = Plus / Plus
Query: 493 cttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatgttaggtctgtgaa 552
||||||| | ||||||||||| ||||| || ||||| || || ||||| | || |||||
Sbjct: 10012 cttcttcctgacagtcctaattagcaatgtcggtggtgctggcgatgtccgatcagtgaa 10071
Query: 553 gatcaaaggaacggagctaggatggctccctatgggccgcaactggggccaggtgtggca 612
|||||||||||||||| || |||||| | ||||||||||||||||| ||| | |||||
Sbjct: 10072 gatcaaaggaacggagtccggttggctctcgatgggccgcaactgggggcagatatggca 10131
Query: 613 catcaactgtgacatgaggggacagcctctatcgtttgagctcagctcaagcgatagcaa 672
|||||||| ||| | |||||||||||||| || || ||||||| |||||| ||| | ||
Sbjct: 10132 catcaactctgatttcaggggacagcctctctccttcgagctcacctcaagtgatggaaa 10191
Query: 673 gacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggcaagacatacacggg 732
|| |||||| | |||||| || || ||||| ||||| |||||||| |||||||| ||
Sbjct: 10192 aacattgaccaactacaacgtggtccctaaggagtgggacttcggcaaaacatacactgg 10251
Query: 733 gaagcagtttcttctgtagaga 754
|||||||| || || ||||||
Sbjct: 10252 caagcagttcctgctctagaga 10273
Score = 111 bits (56), Expect = 8e-022
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 184 cggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccgaccc 243
|||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct: 7317 cggctcctccgccctctccgagtggcgctccgccaaggcctcctactacgccgccgaccc 7376
Query: 244 cgaagacgccatcggt 259
|||||||||||||||
Sbjct: 7377 ggaagacgccatcggt 7392
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 394 ctgcaacccgcccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||||||||||||| | ||||||||||
Sbjct: 7885 ctgcaacccgcccaaccaccatttcctcctccccatccagt 7925
Score = 56.0 bits (28), Expect = 4e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 942 agaggcttgatgtatcattcaaaatagaaggc 973
|||||||||||||| |||||||||||||||||
Sbjct: 10480 agaggcttgatgtaccattcaaaatagaaggc 10511
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 216 bits (109), Expect = 2e-053
Identities = 133/141 (94%)
Strand = Plus / Plus
Query: 257 ggtggggcgtgcgggttcggggatctggggaaacacggctacgggatggcgacggtgggg 316
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 3235618 ggtggcgcgtgcgggttcggggatctggggaagcacgggtacgggatggcgacggtgggg 3235677
Query: 317 ctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtgc 376
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3235678 ctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgctacgaggtgaagtgc 3235737
Query: 377 gtcgaggacctcaagcactgc 397
|| || ||||||||| |||||
Sbjct: 3235738 gtggatgacctcaagtactgc 3235758
Score = 131 bits (66), Expect = 8e-028
Identities = 213/262 (81%)
Strand = Plus / Plus
Query: 493 cttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatgttaggtctgtgaa 552
||||||| | ||||||||||| ||||| || ||||| || || ||||| | || |||||
Sbjct: 3237966 cttcttcctgacagtcctaattagcaatgtcggtggtgctggcgatgtccgatcagtgaa 3238025
Query: 553 gatcaaaggaacggagctaggatggctccctatgggccgcaactggggccaggtgtggca 612
|||||||||||||||| || |||||| | ||||||||||||||||| ||| | |||||
Sbjct: 3238026 gatcaaaggaacggagtccggttggctctcgatgggccgcaactgggggcagatatggca 3238085
Query: 613 catcaactgtgacatgaggggacagcctctatcgtttgagctcagctcaagcgatagcaa 672
|||||||| ||| | |||||||||||||| || || ||||||| |||||| ||| | ||
Sbjct: 3238086 catcaactctgatttcaggggacagcctctctccttcgagctcacctcaagtgatggaaa 3238145
Query: 673 gacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggcaagacatacacggg 732
|| |||||| | |||||| || || ||||| ||||| |||||||| |||||||| ||
Sbjct: 3238146 aacattgaccaactacaacgtggtccctaaggagtgggacttcggcaaaacatacactgg 3238205
Query: 733 gaagcagtttcttctgtagaga 754
|||||||| || || ||||||
Sbjct: 3238206 caagcagttcctgctctagaga 3238227
Score = 111 bits (56), Expect = 8e-022
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 184 cggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccgaccc 243
|||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct: 3235271 cggctcctccgccctctccgagtggcgctccgccaaggcctcctactacgccgccgaccc 3235330
Query: 244 cgaagacgccatcggt 259
|||||||||||||||
Sbjct: 3235331 ggaagacgccatcggt 3235346
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 394 ctgcaacccgcccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||||||||||||| | ||||||||||
Sbjct: 3235839 ctgcaacccgcccaaccaccatttcctcctccccatccagt 3235879
Score = 56.0 bits (28), Expect = 4e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 942 agaggcttgatgtatcattcaaaatagaaggc 973
|||||||||||||| |||||||||||||||||
Sbjct: 3238434 agaggcttgatgtaccattcaaaatagaaggc 3238465
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 216 bits (109), Expect = 2e-053
Identities = 133/141 (94%)
Strand = Plus / Plus
Query: 257 ggtggggcgtgcgggttcggggatctggggaaacacggctacgggatggcgacggtgggg 316
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 7272882 ggtggcgcgtgcgggttcggggatctggggaagcacgggtacgggatggcgacggtgggg 7272941
Query: 317 ctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtgc 376
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7272942 ctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgctacgaggtgaagtgc 7273001
Query: 377 gtcgaggacctcaagcactgc 397
|| || ||||||||| |||||
Sbjct: 7273002 gtggatgacctcaagtactgc 7273022
Score = 131 bits (66), Expect = 8e-028
Identities = 213/262 (81%)
Strand = Plus / Plus
Query: 493 cttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatgttaggtctgtgaa 552
||||||| | ||||||||||| ||||| || ||||| || || ||||| | || |||||
Sbjct: 7275230 cttcttcctgacagtcctaattagcaatgtcggtggtgctggcgatgtccgatcagtgaa 7275289
Query: 553 gatcaaaggaacggagctaggatggctccctatgggccgcaactggggccaggtgtggca 612
|||||||||||||||| || |||||| | ||||||||||||||||| ||| | |||||
Sbjct: 7275290 gatcaaaggaacggagtccggttggctctcgatgggccgcaactgggggcagatatggca 7275349
Query: 613 catcaactgtgacatgaggggacagcctctatcgtttgagctcagctcaagcgatagcaa 672
|||||||| ||| | |||||||||||||| || || ||||||| |||||| ||| | ||
Sbjct: 7275350 catcaactctgatttcaggggacagcctctctccttcgagctcacctcaagtgatggaaa 7275409
Query: 673 gacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggcaagacatacacggg 732
|| |||||| | |||||| || || ||||| ||||| |||||||| |||||||| ||
Sbjct: 7275410 aacattgaccaactacaacgtggtccctaaggagtgggacttcggcaaaacatacactgg 7275469
Query: 733 gaagcagtttcttctgtagaga 754
|||||||| || || ||||||
Sbjct: 7275470 caagcagttcctgctctagaga 7275491
Score = 111 bits (56), Expect = 8e-022
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 184 cggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccgaccc 243
|||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct: 7272535 cggctcctccgccctctccgagtggcgctccgccaaggcctcctactacgccgccgaccc 7272594
Query: 244 cgaagacgccatcggt 259
|||||||||||||||
Sbjct: 7272595 ggaagacgccatcggt 7272610
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 394 ctgcaacccgcccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||||||||||||| | ||||||||||
Sbjct: 7273103 ctgcaacccgcccaaccaccatttcctcctccccatccagt 7273143
Score = 56.0 bits (28), Expect = 4e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 942 agaggcttgatgtatcattcaaaatagaaggc 973
|||||||||||||| |||||||||||||||||
Sbjct: 7275698 agaggcttgatgtaccattcaaaatagaaggc 7275729
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 2318481 cttcctcctcctccccctcctc 2318460
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 216 bits (109), Expect = 2e-053
Identities = 133/141 (94%)
Strand = Plus / Plus
Query: 257 ggtggggcgtgcgggttcggggatctggggaaacacggctacgggatggcgacggtgggg 316
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 26416981 ggtggcgcgtgcgggttcggggatctggggaagcacgggtacgggatggcgacggtgggg 26417040
Query: 317 ctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtgc 376
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 26417041 ctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgctacgaggtgaagtgc 26417100
Query: 377 gtcgaggacctcaagcactgc 397
|| || ||||||||| |||||
Sbjct: 26417101 gtggatgacctcaagtactgc 26417121
Score = 131 bits (66), Expect = 8e-028
Identities = 213/262 (81%)
Strand = Plus / Plus
Query: 493 cttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatgttaggtctgtgaa 552
||||||| | ||||||||||| ||||| || ||||| || || ||||| | || |||||
Sbjct: 26419329 cttcttcctgacagtcctaattagcaatgtcggtggtgctggcgatgtccgatcagtgaa 26419388
Query: 553 gatcaaaggaacggagctaggatggctccctatgggccgcaactggggccaggtgtggca 612
|||||||||||||||| || |||||| | ||||||||||||||||| ||| | |||||
Sbjct: 26419389 gatcaaaggaacggagtccggttggctctcgatgggccgcaactgggggcagatatggca 26419448
Query: 613 catcaactgtgacatgaggggacagcctctatcgtttgagctcagctcaagcgatagcaa 672
|||||||| ||| | |||||||||||||| || || ||||||| |||||| ||| | ||
Sbjct: 26419449 catcaactctgatttcaggggacagcctctctccttcgagctcacctcaagtgatggaaa 26419508
Query: 673 gacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggcaagacatacacggg 732
|| |||||| | |||||| || || ||||| ||||| |||||||| |||||||| ||
Sbjct: 26419509 aacattgaccaactacaacgtggtccctaaggagtgggacttcggcaaaacatacactgg 26419568
Query: 733 gaagcagtttcttctgtagaga 754
|||||||| || || ||||||
Sbjct: 26419569 caagcagttcctgctctagaga 26419590
Score = 111 bits (56), Expect = 8e-022
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 184 cggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccgaccc 243
|||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct: 26416634 cggctcctccgccctctccgagtggcgctccgccaaggcctcctactacgccgccgaccc 26416693
Query: 244 cgaagacgccatcggt 259
|||||||||||||||
Sbjct: 26416694 ggaagacgccatcggt 26416709
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 394 ctgcaacccgcccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||||||||||||| | ||||||||||
Sbjct: 26417202 ctgcaacccgcccaaccaccatttcctcctccccatccagt 26417242
Score = 56.0 bits (28), Expect = 4e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 942 agaggcttgatgtatcattcaaaatagaaggc 973
|||||||||||||| |||||||||||||||||
Sbjct: 26419797 agaggcttgatgtaccattcaaaatagaaggc 26419828
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 21462580 cttcctcctcctccccctcctc 21462559
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 5476563 tcttcttcctcctcctcctcctcctc 5476588
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01,
complete sequence
Length = 186325
Score = 216 bits (109), Expect = 2e-053
Identities = 133/141 (94%)
Strand = Plus / Plus
Query: 257 ggtggggcgtgcgggttcggggatctggggaaacacggctacgggatggcgacggtgggg 316
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 131893 ggtggcgcgtgcgggttcggggatctggggaagcacgggtacgggatggcgacggtgggg 131952
Query: 317 ctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtgc 376
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 131953 ctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgctacgaggtgaagtgc 132012
Query: 377 gtcgaggacctcaagcactgc 397
|| || ||||||||| |||||
Sbjct: 132013 gtggatgacctcaagtactgc 132033
Score = 131 bits (66), Expect = 8e-028
Identities = 213/262 (81%)
Strand = Plus / Plus
Query: 493 cttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatgttaggtctgtgaa 552
||||||| | ||||||||||| ||||| || ||||| || || ||||| | || |||||
Sbjct: 134241 cttcttcctgacagtcctaattagcaatgtcggtggtgctggcgatgtccgatcagtgaa 134300
Query: 553 gatcaaaggaacggagctaggatggctccctatgggccgcaactggggccaggtgtggca 612
|||||||||||||||| || |||||| | ||||||||||||||||| ||| | |||||
Sbjct: 134301 gatcaaaggaacggagtccggttggctctcgatgggccgcaactgggggcagatatggca 134360
Query: 613 catcaactgtgacatgaggggacagcctctatcgtttgagctcagctcaagcgatagcaa 672
|||||||| ||| | |||||||||||||| || || ||||||| |||||| ||| | ||
Sbjct: 134361 catcaactctgatttcaggggacagcctctctccttcgagctcacctcaagtgatggaaa 134420
Query: 673 gacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggcaagacatacacggg 732
|| |||||| | |||||| || || ||||| ||||| |||||||| |||||||| ||
Sbjct: 134421 aacattgaccaactacaacgtggtccctaaggagtgggacttcggcaaaacatacactgg 134480
Query: 733 gaagcagtttcttctgtagaga 754
|||||||| || || ||||||
Sbjct: 134481 caagcagttcctgctctagaga 134502
Score = 111 bits (56), Expect = 8e-022
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 184 cggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccgaccc 243
|||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct: 131546 cggctcctccgccctctccgagtggcgctccgccaaggcctcctactacgccgccgaccc 131605
Query: 244 cgaagacgccatcggt 259
|||||||||||||||
Sbjct: 131606 ggaagacgccatcggt 131621
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 394 ctgcaacccgcccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||||||||||||| | ||||||||||
Sbjct: 132114 ctgcaacccgcccaaccaccatttcctcctccccatccagt 132154
Score = 56.0 bits (28), Expect = 4e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 942 agaggcttgatgtatcattcaaaatagaaggc 973
|||||||||||||| |||||||||||||||||
Sbjct: 134709 agaggcttgatgtaccattcaaaatagaaggc 134740
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 216 bits (109), Expect = 2e-053
Identities = 133/141 (94%)
Strand = Plus / Plus
Query: 257 ggtggggcgtgcgggttcggggatctggggaaacacggctacgggatggcgacggtgggg 316
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 29458877 ggtggcgcgtgcgggttcggggatctggggaagcacgggtacgggatggcgacggtgggg 29458936
Query: 317 ctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtgc 376
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 29458937 ctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgctacgaggtgaagtgc 29458996
Query: 377 gtcgaggacctcaagcactgc 397
|| || ||||||||| |||||
Sbjct: 29458997 gtggatgacctcaagtactgc 29459017
Score = 131 bits (66), Expect = 8e-028
Identities = 213/262 (81%)
Strand = Plus / Plus
Query: 493 cttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatgttaggtctgtgaa 552
||||||| | ||||||||||| ||||| || ||||| || || ||||| | || |||||
Sbjct: 29461225 cttcttcctgacagtcctaattagcaatgtcggtggtgctggcgatgtccgatcagtgaa 29461284
Query: 553 gatcaaaggaacggagctaggatggctccctatgggccgcaactggggccaggtgtggca 612
|||||||||||||||| || |||||| | ||||||||||||||||| ||| | |||||
Sbjct: 29461285 gatcaaaggaacggagtccggttggctctcgatgggccgcaactgggggcagatatggca 29461344
Query: 613 catcaactgtgacatgaggggacagcctctatcgtttgagctcagctcaagcgatagcaa 672
|||||||| ||| | |||||||||||||| || || ||||||| |||||| ||| | ||
Sbjct: 29461345 catcaactctgatttcaggggacagcctctctccttcgagctcacctcaagtgatggaaa 29461404
Query: 673 gacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggcaagacatacacggg 732
|| |||||| | |||||| || || ||||| ||||| |||||||| |||||||| ||
Sbjct: 29461405 aacattgaccaactacaacgtggtccctaaggagtgggacttcggcaaaacatacactgg 29461464
Query: 733 gaagcagtttcttctgtagaga 754
|||||||| || || ||||||
Sbjct: 29461465 caagcagttcctgctctagaga 29461486
Score = 111 bits (56), Expect = 8e-022
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 184 cggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccgaccc 243
|||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct: 29458530 cggctcctccgccctctccgagtggcgctccgccaaggcctcctactacgccgccgaccc 29458589
Query: 244 cgaagacgccatcggt 259
|||||||||||||||
Sbjct: 29458590 ggaagacgccatcggt 29458605
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 394 ctgcaacccgcccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||||||||||||| | ||||||||||
Sbjct: 29459098 ctgcaacccgcccaaccaccatttcctcctccccatccagt 29459138
Score = 56.0 bits (28), Expect = 4e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 942 agaggcttgatgtatcattcaaaatagaaggc 973
|||||||||||||| |||||||||||||||||
Sbjct: 29461693 agaggcttgatgtaccattcaaaatagaaggc 29461724
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 8096483 tcttcttcctcctcctcctcctcctc 8096508
>gb|CB000860.1|CB000860 S345K_B12 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 636
Score = 77.8 bits (39), Expect = 1e-011
Identities = 138/171 (80%)
Strand = Plus / Plus
Query: 493 cttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatgttaggtctgtgaa 552
||||||| | ||||||||||| ||||| || ||||| || || ||||| | || | |||
Sbjct: 144 cttcttcctgacagtcctaattagcaatgtcggtggtgctggcgatgtccgatcagagaa 203
Query: 553 gatcaaaggaacggagctaggatggctccctatgggccgcaactggggccaggtgtggca 612
||||||||||||||| || |||||| | ||||||||||||||||| ||| | |||||
Sbjct: 204 catcaaaggaacggagtccggctggctctcgatgggccgcaactgggggcagatatggca 263
Query: 613 catcaactgtgacatgaggggacagcctctatcgtttgagctcagctcaag 663
|||||||| ||| | | |||||||||||| || || |||||| ||||||
Sbjct: 264 catcaactctgatttcatgggacagcctctctccttctagctcacctcaag 314
>gb|CA756483.1|CA756483 BR030043000_PLATE_E06_45_049.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030043000_PLATE_E06_45_049.ab1 similar to (AF247165)
alpha-expansin OsEXP10 [Oryza sativa], mRNA sequence
Length = 625
Score = 56.0 bits (28), Expect = 4e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 942 agaggcttgatgtatcattcaaaatagaaggc 973
|||||||||||||| |||||||||||||||||
Sbjct: 331 agaggcttgatgtaccattcaaaatagaaggc 362
Score = 56.0 bits (28), Expect = 4e-005
Identities = 100/124 (80%)
Strand = Plus / Plus
Query: 631 gggacagcctctatcgtttgagctcagctcaagcgatagcaagacgctgaccagtttcaa 690
|||||||||||| || || ||||||| |||||| ||| | || || |||||| | |||
Sbjct: 1 gggacagcctctctccttcgagctcacctcaagtgatggaaaaacattgaccaactacaa 60
Query: 691 cgtcgtgcccaaggattgggagttcggcaagacatacacggggaagcagtttcttctgta 750
||| || || ||||| ||||| |||||||| |||||||| || |||||||| || || ||
Sbjct: 61 cgtggtccctaaggagtgggacttcggcaaaacatacactggcaagcagttcctgctcta 120
Query: 751 gaga 754
||||
Sbjct: 121 gaga 124
>dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052B04, full
insert sequence
Length = 1088
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 350 tgcggcggctgctacgaggtcaagtgcgt 378
||||||| |||||||||||||||||||||
Sbjct: 350 tgcggcgcctgctacgaggtcaagtgcgt 378
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0543D10
Length = 134866
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 350 tgcggcggctgctacgaggtcaagtgcgt 378
||||||| |||||||||||||||||||||
Sbjct: 14128 tgcggcgcctgctacgaggtcaagtgcgt 14156
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0604E01
Length = 159049
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 350 tgcggcggctgctacgaggtcaagtgcgt 378
||||||| |||||||||||||||||||||
Sbjct: 128150 tgcggcgcctgctacgaggtcaagtgcgt 128178
>gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018997, whole
genome shotgun sequence
Length = 21087
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 350 tgcggcggctgctacgaggtcaagtgcgt 378
||||||| |||||||||||||||||||||
Sbjct: 12684 tgcggcgcctgctacgaggtcaagtgcgt 12656
>ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1088
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 350 tgcggcggctgctacgaggtcaagtgcgt 378
||||||| |||||||||||||||||||||
Sbjct: 350 tgcggcgcctgctacgaggtcaagtgcgt 378
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 350 tgcggcggctgctacgaggtcaagtgcgt 378
||||||| |||||||||||||||||||||
Sbjct: 27892568 tgcggcgcctgctacgaggtcaagtgcgt 27892596
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 350 tgcggcggctgctacgaggtcaagtgcgt 378
||||||| |||||||||||||||||||||
Sbjct: 19206056 tgcggcgcctgctacgaggtcaagtgcgt 19206084
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 350 tgcggcggctgctacgaggtcaagtgcgt 378
||||||| |||||||||||||||||||||
Sbjct: 26808062 tgcggcgcctgctacgaggtcaagtgcgt 26808090
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 350 tgcggcggctgctacgaggtcaagtgcgt 378
||||||| |||||||||||||||||||||
Sbjct: 28130655 tgcggcgcctgctacgaggtcaagtgcgt 28130683
>dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1008_D02, ***
SEQUENCING IN PROGRESS ***
Length = 140327
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 326 gcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggt 369
|||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 119796 gcgctgttcgggcgcggcagcgcgtgcggcggctgctacgaggt 119753
>dbj|AK058491.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E03, full
insert sequence
Length = 964
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||||||||
Sbjct: 69 tcttcttcctcctcctcctcctcctcac 96
>dbj|AK101940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074I02, full
insert sequence
Length = 1156
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 326 gcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggt 369
|||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 404 gcgctgttcgggcgcggcagcgcgtgcggcggctgctacgaggt 447
>dbj|AK111100.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G12, full
insert sequence
Length = 893
Score = 48.1 bits (24), Expect = 0.010
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 307 gacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgct 362
||||| || |||||||||||||||||| | |||||||| ||||||||| |||||
Sbjct: 186 gacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgct 241
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence
Length = 182756
Score = 48.1 bits (24), Expect = 0.010
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 307 gacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgct 362
||||| || |||||||||||||||||| | |||||||| ||||||||| |||||
Sbjct: 159911 gacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgct 159856
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 326 gcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggt 369
|||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 2065769 gcgctgttcgggcgcggcagcgcgtgcggcggctgctacgaggt 2065812
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 3184659 cttcctcctcctccccctcctc 3184638
>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0040H10
Length = 173301
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 326 gcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggt 369
|||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 83477 gcgctgttcgggcgcggcagcgcgtgcggcggctgctacgaggt 83520
>gb|AACV01000580.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000580, whole
genome shotgun sequence
Length = 47299
Score = 48.1 bits (24), Expect = 0.010
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 307 gacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgct 362
||||| || |||||||||||||||||| | |||||||| ||||||||| |||||
Sbjct: 19772 gacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgct 19717
>gb|AACV01002031.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002031, whole
genome shotgun sequence
Length = 50331
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||||||||
Sbjct: 16005 tcttcttcctcctcctcctcctcctcac 16032
>gb|AACV01014579.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014579, whole
genome shotgun sequence
Length = 19733
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 326 gcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggt 369
|||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 18304 gcgctgttcgggcgcggcagcgcgtgcggcggctgctacgaggt 18261
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||||||||
Sbjct: 26862525 tcttcttcctcctcctcctcctcctcac 26862498
Score = 48.1 bits (24), Expect = 0.010
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 307 gacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgct 362
||||| || |||||||||||||||||| | |||||||| ||||||||| |||||
Sbjct: 8193572 gacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgct 8193517
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 11230579 tcttcttcctcctcctcctcctcctc 11230604
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 6309216 cttcctcctcctccccctcctc 6309237
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 519894 cttcctcctcctccccctcctc 519915
>ref|NM_192452.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 249
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||||||||
Sbjct: 122 tcttcttcctcctcctcctcctcctcac 95
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||||||||
Sbjct: 1309908 tcttcttcctcctcctcctcctcctcac 1309881
>dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0694A04
Length = 141476
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||||||||
Sbjct: 128947 tcttcttcctcctcctcctcctcctcac 128920
>dbj|AP003291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0684E06
Length = 147004
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||||||||
Sbjct: 17504 tcttcttcctcctcctcctcctcctcac 17477
>ref|NM_188790.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 756
Score = 48.1 bits (24), Expect = 0.010
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 307 gacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgct 362
||||| || |||||||||||||||||| | |||||||| ||||||||| |||||
Sbjct: 177 gacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgct 232
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 48.1 bits (24), Expect = 0.010
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 307 gacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgct 362
||||| || |||||||||||||||||| | |||||||| ||||||||| |||||
Sbjct: 8193412 gacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgct 8193357
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 6309056 cttcctcctcctccccctcctc 6309077
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 519894 cttcctcctcctccccctcctc 519915
>dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0034C11
Length = 139399
Score = 48.1 bits (24), Expect = 0.010
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 307 gacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgct 362
||||| || |||||||||||||||||| | |||||||| ||||||||| |||||
Sbjct: 113508 gacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgct 113453
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 326 gcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggt 369
|||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 5968568 gcgctgttcgggcgcggcagcgcgtgcggcggctgctacgaggt 5968611
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 7057099 cttcctcctcctccccctcctc 7057078
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||||||||
Sbjct: 1271813 tcttcttcctcctcctcctcctcctcac 1271786
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 48.1 bits (24), Expect = 0.010
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 307 gacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgct 362
||||| || |||||||||||||||||| | |||||||| ||||||||| |||||
Sbjct: 8244113 gacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgct 8244058
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 11402739 tcttcttcctcctcctcctcctcctc 11402764
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 6375951 cttcctcctcctccccctcctc 6375972
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 520515 cttcctcctcctccccctcctc 520536
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 326 gcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggt 369
|||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 23667305 gcgctgttcgggcgcggcagcgcgtgcggcggctgctacgaggt 23667348
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 24755836 cttcctcctcctccccctcctc 24755815
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||||||||
Sbjct: 26473534 tcttcttcctcctcctcctcctcctcac 26473507
Score = 48.1 bits (24), Expect = 0.010
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 307 gacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgct 362
||||| || |||||||||||||||||| | |||||||| ||||||||| |||||
Sbjct: 8244113 gacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgct 8244058
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 11402739 tcttcttcctcctcctcctcctcctc 11402764
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 6375951 cttcctcctcctccccctcctc 6375972
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 520515 cttcctcctcctccccctcctc 520536
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||||||||
Sbjct: 26781855 tcttcttcctcctcctcctcctcctcac 26781828
Score = 48.1 bits (24), Expect = 0.010
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 307 gacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgct 362
||||| || |||||||||||||||||| | |||||||| ||||||||| |||||
Sbjct: 8195790 gacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgct 8195735
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 11232797 tcttcttcctcctcctcctcctcctc 11232822
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 6311434 cttcctcctcctccccctcctc 6311455
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 522092 cttcctcctcctccccctcctc 522113
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 326 gcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggt 369
|||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 24600284 gcgctgttcgggcgcggcagcgcgtgcggcggctgctacgaggt 24600327
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cttcctcctcctccccctcctc 144
||||||||||||||||||||||
Sbjct: 25719174 cttcctcctcctccccctcctc 25719153
>gb|AQ327394.1|AQ327394 nbxb0040J22r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0040J22r, DNA sequence
Length = 801
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 118 ctcttcttcctcctcctccccctcctc 144
||||||||||||||||||| |||||||
Sbjct: 367 ctcttcttcctcctcctcctcctcctc 341
>gb|CZ593858.1|CZ593858 UCDRDs742_5.3 UCD RDs Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RDs742_5.3, DNA sequence
Length = 908
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 118 ctcttcttcctcctcctccccctcctc 144
||||||||||||||||||| |||||||
Sbjct: 367 ctcttcttcctcctcctcctcctcctc 341
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,848,849
Number of Sequences: 438736
Number of extensions: 1848849
Number of successful extensions: 57441
Number of sequences better than 0.5: 185
Number of HSP's better than 0.5 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47419
Number of HSP's gapped (non-prelim): 9726
length of query: 1061
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1040
effective length of database: 2,791,206,460
effective search space: 2902854718400
effective search space used: 2902854718400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)