BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493528.2.1
(627 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP184941.1|BP184941 BP184941 pNS rice callus cDNA Oryza ... 533 e-149
dbj|AK067233.1| Oryza sativa (japonica cultivar-group) cDNA... 533 e-149
dbj|AK101600.1| Oryza sativa (japonica cultivar-group) cDNA... 533 e-149
gb|CB678418.1|CB678418 OSJNEe16F21.r OSJNEe Oryza sativa (j... 519 e-145
gb|CB677715.1|CB677715 OSJNEe14P20.r OSJNEe Oryza sativa (j... 517 e-144
gb|C24990.1|C24990 C24990 Rice green shoot Oryza sativa (ja... 297 4e-078
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 232 2e-058
dbj|AP003543.3| Oryza sativa (japonica cultivar-group) geno... 232 2e-058
gb|AACV01013747.1| Oryza sativa (japonica cultivar-group) c... 232 2e-058
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 232 2e-058
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 232 2e-058
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 232 2e-058
gb|CL519980.1|CL519980 SAI9B06 Flanking Sequence Tag of Ory... 147 8e-033
>gb|BP184941.1|BP184941 BP184941 pNS rice callus cDNA Oryza sativa (japonica
cultivar-group) cDNA clone 23C4AG062, mRNA sequence
Length = 1012
Score = 533 bits (269), Expect = e-149
Identities = 494/569 (86%)
Strand = Plus / Minus
Query: 49 tacagtcatccagctaattgactaacacttgagctcagtaaagtattgatctctccaatt 108
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 916 tacagtcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaatt 857
Query: 109 atatacactggtcttccatcaaaaacagacgacagtgtcgactcacacagcttctttagt 168
|||| ||| || || |||||||| |||| || || || | ||| || |||||||| |||
Sbjct: 856 atatgcaccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagt 797
Query: 169 tcccttgtttttgtaattgctgcctcttgctttggccatgatgatgacagtgcgttttgc 228
||||| |||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 796 tccctggtttttgtaattgctgcctcttgcttaggccaggatgacgaaagtgcattttgc 737
Query: 229 agctccatacgcttaacagataaatcacctaaaccttcccgtagttttacttcgtgatgc 288
|||||||| |||||||| || ||||||||||| ||||| |||||||| || || ||||||
Sbjct: 736 agctccattcgcttaactgacaaatcacctaagccttctcgtagtttcacctcatgatgc 677
Query: 289 ttcttctcttctaagcttgaaactaatctatccagaaaccttttagagttaaggatcatt 348
||||| |||||||| |||| |||||||| || | ||||||||| ||||| || ||||||
Sbjct: 676 ttcttgtcttctaatgttgatactaatctgtctaaaaacctttttgagttgagaatcatt 617
Query: 349 ataaggtcaagagtcttctgattagttagcaatgagattgctgacgagatctctacaagc 408
|||||||||||||| ||||| ||| | ||||| || || ||||| |||| |||| |||||
Sbjct: 616 ataaggtcaagagttttctggttactgagcaaagatatagctgatgagacctctgcaagc 557
Query: 409 atgttctccaaactgtcaggagcatgctgctggagaacaaaaggtgagacagcttgcact 468
|| ||||| ||| | |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 556 atattctctaaattttcaggagcatactgctgcagaacaaaaggtgagacagcttgcact 497
Query: 469 tgatgctgtagagatgatgtgtctgcattcctcatctcccctaagcgttgagtcaaaaat 528
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct: 496 tgatgctgtagagatgatgtatcagcattcctcatctcccctaagcgttgggtcaaaaat 437
Query: 529 gattttacctcgagtaaatcatccagaatattattcctatattctttctccagcaacaaa 588
| | ||||||| ||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 436 gctcttacctcaagtaaatcatcaagaatattatttctatattccttctctagtaactgg 377
Query: 589 cttctatcttcagctatcatttgagactg 617
||||| |||||||||| ||||||||||
Sbjct: 376 cttctttcttcagctaaactttgagactg 348
>dbj|AK067233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095B21, full
insert sequence
Length = 2039
Score = 533 bits (269), Expect = e-149
Identities = 494/569 (86%)
Strand = Plus / Minus
Query: 49 tacagtcatccagctaattgactaacacttgagctcagtaaagtattgatctctccaatt 108
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 1770 tacagtcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaatt 1711
Query: 109 atatacactggtcttccatcaaaaacagacgacagtgtcgactcacacagcttctttagt 168
|||| ||| || || |||||||| |||| || || || | ||| || |||||||| |||
Sbjct: 1710 atatgcaccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagt 1651
Query: 169 tcccttgtttttgtaattgctgcctcttgctttggccatgatgatgacagtgcgttttgc 228
||||| |||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 1650 tccctggtttttgtaattgctgcctcttgcttaggccaggatgacgaaagtgcattttgc 1591
Query: 229 agctccatacgcttaacagataaatcacctaaaccttcccgtagttttacttcgtgatgc 288
|||||||| |||||||| || ||||||||||| ||||| |||||||| || || ||||||
Sbjct: 1590 agctccattcgcttaactgacaaatcacctaagccttctcgtagtttcacctcatgatgc 1531
Query: 289 ttcttctcttctaagcttgaaactaatctatccagaaaccttttagagttaaggatcatt 348
||||| |||||||| |||| |||||||| || | ||||||||| ||||| || ||||||
Sbjct: 1530 ttcttgtcttctaatgttgatactaatctgtctaaaaacctttttgagttgagaatcatt 1471
Query: 349 ataaggtcaagagtcttctgattagttagcaatgagattgctgacgagatctctacaagc 408
|||||||||||||| ||||| ||| | ||||| || || ||||| |||| |||| |||||
Sbjct: 1470 ataaggtcaagagttttctggttactgagcaaagatatagctgatgagacctctgcaagc 1411
Query: 409 atgttctccaaactgtcaggagcatgctgctggagaacaaaaggtgagacagcttgcact 468
|| ||||| ||| | |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 1410 atattctctaaattttcaggagcatactgctgcagaacaaaaggtgagacagcttgcact 1351
Query: 469 tgatgctgtagagatgatgtgtctgcattcctcatctcccctaagcgttgagtcaaaaat 528
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct: 1350 tgatgctgtagagatgatgtatcagcattcctcatctcccctaagcgttgggtcaaaaat 1291
Query: 529 gattttacctcgagtaaatcatccagaatattattcctatattctttctccagcaacaaa 588
| | ||||||| ||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 1290 gctcttacctcaagtaaatcatcaagaatattatttctatattccttctctagtaactgg 1231
Query: 589 cttctatcttcagctatcatttgagactg 617
||||| |||||||||| ||||||||||
Sbjct: 1230 cttctttcttcagctaaactttgagactg 1202
>dbj|AK101600.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051I20, full
insert sequence
Length = 1856
Score = 533 bits (269), Expect = e-149
Identities = 494/569 (86%)
Strand = Plus / Minus
Query: 49 tacagtcatccagctaattgactaacacttgagctcagtaaagtattgatctctccaatt 108
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 1786 tacagtcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaatt 1727
Query: 109 atatacactggtcttccatcaaaaacagacgacagtgtcgactcacacagcttctttagt 168
|||| ||| || || |||||||| |||| || || || | ||| || |||||||| |||
Sbjct: 1726 atatgcaccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagt 1667
Query: 169 tcccttgtttttgtaattgctgcctcttgctttggccatgatgatgacagtgcgttttgc 228
||||| |||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 1666 tccctggtttttgtaattgctgcctcttgcttaggccaggatgacgaaagtgcattttgc 1607
Query: 229 agctccatacgcttaacagataaatcacctaaaccttcccgtagttttacttcgtgatgc 288
|||||||| |||||||| || ||||||||||| ||||| |||||||| || || ||||||
Sbjct: 1606 agctccattcgcttaactgacaaatcacctaagccttctcgtagtttcacctcatgatgc 1547
Query: 289 ttcttctcttctaagcttgaaactaatctatccagaaaccttttagagttaaggatcatt 348
||||| |||||||| |||| |||||||| || | ||||||||| ||||| || ||||||
Sbjct: 1546 ttcttgtcttctaatgttgatactaatctgtctaaaaacctttttgagttgagaatcatt 1487
Query: 349 ataaggtcaagagtcttctgattagttagcaatgagattgctgacgagatctctacaagc 408
|||||||||||||| ||||| ||| | ||||| || || ||||| |||| |||| |||||
Sbjct: 1486 ataaggtcaagagttttctggttactgagcaaagatatagctgatgagacctctgcaagc 1427
Query: 409 atgttctccaaactgtcaggagcatgctgctggagaacaaaaggtgagacagcttgcact 468
|| ||||| ||| | |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 1426 atattctctaaattttcaggagcatactgctgcagaacaaaaggtgagacagcttgcact 1367
Query: 469 tgatgctgtagagatgatgtgtctgcattcctcatctcccctaagcgttgagtcaaaaat 528
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct: 1366 tgatgctgtagagatgatgtatcagcattcctcatctcccctaagcgttgggtcaaaaat 1307
Query: 529 gattttacctcgagtaaatcatccagaatattattcctatattctttctccagcaacaaa 588
| | ||||||| ||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 1306 gctcttacctcaagtaaatcatcaagaatattatttctatattccttctctagtaactgg 1247
Query: 589 cttctatcttcagctatcatttgagactg 617
||||| |||||||||| ||||||||||
Sbjct: 1246 cttctttcttcagctaaactttgagactg 1218
>gb|CB678418.1|CB678418 OSJNEe16F21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe16F21 3', mRNA sequence
Length = 832
Score = 519 bits (262), Expect = e-145
Identities = 457/522 (87%)
Strand = Plus / Plus
Query: 47 aatacagtcatccagctaattgactaacacttgagctcagtaaagtattgatctctccaa 106
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 311 aatacagtcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaa 370
Query: 107 ttatatacactggtcttccatcaaaaacagacgacagtgtcgactcacacagcttcttta 166
|||||| ||| || || |||||||| |||| || || || | ||| || |||||||| |
Sbjct: 371 ttatatgcaccggcctgccatcaaatacagttgatagcgttgtctcgcaaagcttcttga 430
Query: 167 gttcccttgtttttgtaattgctgcctcttgctttggccatgatgatgacagtgcgtttt 226
||||||| |||||||||||||||||||||||||| ||||| ||||| || ||||| ||||
Sbjct: 431 gttccctggtttttgtaattgctgcctcttgcttaggccaggatgacgaaagtgcatttt 490
Query: 227 gcagctccatacgcttaacagataaatcacctaaaccttcccgtagttttacttcgtgat 286
|||||||||| |||||||| || ||||||||||| ||||| |||||||| || || ||||
Sbjct: 491 gcagctccattcgcttaactgacaaatcacctaagccttctcgtagtttcacctcatgat 550
Query: 287 gcttcttctcttctaagcttgaaactaatctatccagaaaccttttagagttaaggatca 346
||||||| |||||||| |||| |||||||| || | ||||||||| ||||| || ||||
Sbjct: 551 gcttcttgtcttctaatgttgatactaatctgtctaaaaacctttttgagttgagaatca 610
Query: 347 ttataaggtcaagagtcttctgattagttagcaatgagattgctgacgagatctctacaa 406
|||||||||||||||| ||||| ||| | ||||| || || ||||| |||| |||| |||
Sbjct: 611 ttataaggtcaagagttttctggttactgagcaaagatatagctgatgagacctctgcaa 670
Query: 407 gcatgttctccaaactgtcaggagcatgctgctggagaacaaaaggtgagacagcttgca 466
|||| ||||| ||| | |||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 671 gcatattctctaaattttcaggagcatactgctgcagaacaaaaggtgagacagcttgca 730
Query: 467 cttgatgctgtagagatgatgtgtctgcattcctcatctcccctaagcgttgagtcaaaa 526
|||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct: 731 cttgatgctgtagagatgatgtatcagcattcctcatctcccctaagcgttgggtcaaaa 790
Query: 527 atgattttacctcgagtaaatcatccagaatattattcctat 568
||| | ||||||| ||||||||||| ||||||||||| ||||
Sbjct: 791 atgctcttacctcaagtaaatcatcaagaatattatttctat 832
>gb|CB677715.1|CB677715 OSJNEe14P20.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe14P20 3', mRNA sequence
Length = 840
Score = 517 bits (261), Expect = e-144
Identities = 458/524 (87%)
Strand = Plus / Plus
Query: 49 tacagtcatccagctaattgactaacacttgagctcagtaaagtattgatctctccaatt 108
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 314 tacagtcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaatt 373
Query: 109 atatacactggtcttccatcaaaaacagacgacagtgtcgactcacacagcttctttagt 168
|||| ||| || || |||||||| |||| || || || | ||| || |||||||| |||
Sbjct: 374 atatgcaccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagt 433
Query: 169 tcccttgtttttgtaattgctgcctcttgctttggccatgatgatgacagtgcgttttgc 228
||||| |||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 434 tccctggtttttgtaattgctgcctcttgcttaggccaggatgacgaaagtgcattttgc 493
Query: 229 agctccatacgcttaacagataaatcacctaaaccttcccgtagttttacttcgtgatgc 288
|||||||| |||||||| || ||||||||||| ||||| |||||||| || || ||||||
Sbjct: 494 agctccattcgcttaactgacaaatcacctaagccttctcgtagtttcacctcatgatgc 553
Query: 289 ttcttctcttctaagcttgaaactaatctatccagaaaccttttagagttaaggatcatt 348
||||| |||||||| |||| |||||||| || | ||||||||| ||||| || ||||||
Sbjct: 554 ttcttgtcttctaatgttgatactaatctgtctaaaaacctttttgagttgagaatcatt 613
Query: 349 ataaggtcaagagtcttctgattagttagcaatgagattgctgacgagatctctacaagc 408
|||||||||||||| ||||| ||| | ||||| || || ||||| |||| |||| |||||
Sbjct: 614 ataaggtcaagagttttctggttactgagcaaagatatagctgatgagacctctgcaagc 673
Query: 409 atgttctccaaactgtcaggagcatgctgctggagaacaaaaggtgagacagcttgcact 468
|| ||||| ||| | |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 674 atattctctaaattttcaggagcatactgctgcagaacaaaaggtgagacagcttgcact 733
Query: 469 tgatgctgtagagatgatgtgtctgcattcctcatctcccctaagcgttgagtcaaaaat 528
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct: 734 tgatgctgtagagatgatgtatcagcattcctcatctcccctaagcgttgggtcaaaaat 793
Query: 529 gattttacctcgagtaaatcatccagaatattattcctatattc 572
| | |||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 794 gctcttacctncagtaaatcatcaagaatattatttctatattc 837
>gb|C24990.1|C24990 C24990 Rice green shoot Oryza sativa (japonica cultivar-group) cDNA
clone S16654_2A, mRNA sequence
Length = 460
Score = 297 bits (150), Expect = 4e-078
Identities = 273/314 (86%)
Strand = Plus / Minus
Query: 49 tacagtcatccagctaattgactaacacttgagctcagtaaagtattgatctctccaatt 108
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 318 tacagtcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaatt 259
Query: 109 atatacactggtcttccatcaaaaacagacgacagtgtcgactcacacagcttctttagt 168
|||| ||| || || |||||||| |||| || || || | ||| || |||||||| |||
Sbjct: 258 atatgcaccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagt 199
Query: 169 tcccttgtttttgtaattgctgcctcttgctttggccatgatgatgacagtgcgttttgc 228
||||| |||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 198 tccctggtttttgtaattgctgcctcttgcttaggccaggatgacgaaagtgcattttgc 139
Query: 229 agctccatacgcttaacagataaatcacctaaaccttcccgtagttttacttcgtgatgc 288
|||||||| |||||||| || ||||||||||| ||||| |||||||| || || ||||||
Sbjct: 138 agctccattcgcttaactgacaaatcacctaagccttctcgtagtttcacctcatgatgc 79
Query: 289 ttcttctcttctaagcttgaaactaatctatccagaaaccttttagagttaaggatcatt 348
||||| |||||||| |||| |||||||| || | ||||||||| ||||| || ||||||
Sbjct: 78 ttcttgtcttctaatgttgatactaatctgtctaaaaacctttttgagttgagaatcatt 19
Query: 349 ataaggtcaagagt 362
||||||||||||||
Sbjct: 18 ataaggtcaagagt 5
>ref|NT_107237.1| Oryza sativa (japonica cultivar-group)
Length = 2924261
Score = 232 bits (117), Expect = 2e-058
Identities = 189/213 (88%)
Strand = Plus / Minus
Query: 326 accttttagagttaaggatcattataaggtcaagagtcttctgattagttagcaatgaga 385
||||||| ||||| || |||||||||||||||||||| ||||| ||| | ||||| || |
Sbjct: 1743006 acctttttgagttgagaatcattataaggtcaagagttttctggttactgagcaaagata 1742947
Query: 386 ttgctgacgagatctctacaagcatgttctccaaactgtcaggagcatgctgctggagaa 445
| ||||| |||| |||| ||||||| ||||| ||| | |||||||||| |||||| ||||
Sbjct: 1742946 tagctgatgagacctctgcaagcatattctctaaattttcaggagcatactgctgcagaa 1742887
Query: 446 caaaaggtgagacagcttgcacttgatgctgtagagatgatgtgtctgcattcctcatct 505
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1742886 caaaaggtgagacagcttgcacttgatgctgtagagatgatgtatcagcattcctcatct 1742827
Query: 506 cccctaagcgttgagtcaaaaatgattttacct 538
||||||||||||| |||||||||| | ||||||
Sbjct: 1742826 cccctaagcgttgggtcaaaaatgctcttacct 1742794
Score = 147 bits (74), Expect = 8e-033
Identities = 128/146 (87%)
Strand = Plus / Minus
Query: 49 tacagtcatccagctaattgactaacacttgagctcagtaaagtattgatctctccaatt 108
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 1743673 tacagtcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaatt 1743614
Query: 109 atatacactggtcttccatcaaaaacagacgacagtgtcgactcacacagcttctttagt 168
|||| ||| || || |||||||| |||| || || || | ||| || |||||||| |||
Sbjct: 1743613 atatgcaccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagt 1743554
Query: 169 tcccttgtttttgtaattgctgcctc 194
||||| ||||||||||||||||||||
Sbjct: 1743553 tccctggtttttgtaattgctgcctc 1743528
Score = 115 bits (58), Expect = 3e-023
Identities = 118/138 (85%)
Strand = Plus / Minus
Query: 194 cttgctttggccatgatgatgacagtgcgttttgcagctccatacgcttaacagataaat 253
||||||| ||||| ||||| || ||||| |||||||||||||| |||||||| || ||||
Sbjct: 1743259 cttgcttaggccaggatgacgaaagtgcattttgcagctccattcgcttaactgacaaat 1743200
Query: 254 cacctaaaccttcccgtagttttacttcgtgatgcttcttctcttctaagcttgaaacta 313
||||||| ||||| |||||||| || || ||||||||||| |||||||| |||| ||||
Sbjct: 1743199 cacctaagccttctcgtagtttcacctcatgatgcttcttgtcttctaatgttgatacta 1743140
Query: 314 atctatccagaaaccttt 331
|||| || | ||||||||
Sbjct: 1743139 atctgtctaaaaaccttt 1743122
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 534 tacctcgagtaaatcatccagaatattattcctatattctttctccagcaacaaacttct 593
|||||| ||||||||||| ||||||||||| |||||||| ||||| || ||| |||||
Sbjct: 1742549 tacctcaagtaaatcatcaagaatattatttctatattccttctctagtaactggcttct 1742490
Query: 594 atcttcagctatcatttgagactg 617
|||||||||| ||||||||||
Sbjct: 1742489 ttcttcagctaaactttgagactg 1742466
>dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0592B08
Length = 131096
Score = 232 bits (117), Expect = 2e-058
Identities = 189/213 (88%)
Strand = Plus / Minus
Query: 326 accttttagagttaaggatcattataaggtcaagagtcttctgattagttagcaatgaga 385
||||||| ||||| || |||||||||||||||||||| ||||| ||| | ||||| || |
Sbjct: 116314 acctttttgagttgagaatcattataaggtcaagagttttctggttactgagcaaagata 116255
Query: 386 ttgctgacgagatctctacaagcatgttctccaaactgtcaggagcatgctgctggagaa 445
| ||||| |||| |||| ||||||| ||||| ||| | |||||||||| |||||| ||||
Sbjct: 116254 tagctgatgagacctctgcaagcatattctctaaattttcaggagcatactgctgcagaa 116195
Query: 446 caaaaggtgagacagcttgcacttgatgctgtagagatgatgtgtctgcattcctcatct 505
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 116194 caaaaggtgagacagcttgcacttgatgctgtagagatgatgtatcagcattcctcatct 116135
Query: 506 cccctaagcgttgagtcaaaaatgattttacct 538
||||||||||||| |||||||||| | ||||||
Sbjct: 116134 cccctaagcgttgggtcaaaaatgctcttacct 116102
Score = 147 bits (74), Expect = 8e-033
Identities = 128/146 (87%)
Strand = Plus / Minus
Query: 49 tacagtcatccagctaattgactaacacttgagctcagtaaagtattgatctctccaatt 108
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 116981 tacagtcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaatt 116922
Query: 109 atatacactggtcttccatcaaaaacagacgacagtgtcgactcacacagcttctttagt 168
|||| ||| || || |||||||| |||| || || || | ||| || |||||||| |||
Sbjct: 116921 atatgcaccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagt 116862
Query: 169 tcccttgtttttgtaattgctgcctc 194
||||| ||||||||||||||||||||
Sbjct: 116861 tccctggtttttgtaattgctgcctc 116836
Score = 115 bits (58), Expect = 3e-023
Identities = 118/138 (85%)
Strand = Plus / Minus
Query: 194 cttgctttggccatgatgatgacagtgcgttttgcagctccatacgcttaacagataaat 253
||||||| ||||| ||||| || ||||| |||||||||||||| |||||||| || ||||
Sbjct: 116567 cttgcttaggccaggatgacgaaagtgcattttgcagctccattcgcttaactgacaaat 116508
Query: 254 cacctaaaccttcccgtagttttacttcgtgatgcttcttctcttctaagcttgaaacta 313
||||||| ||||| |||||||| || || ||||||||||| |||||||| |||| ||||
Sbjct: 116507 cacctaagccttctcgtagtttcacctcatgatgcttcttgtcttctaatgttgatacta 116448
Query: 314 atctatccagaaaccttt 331
|||| || | ||||||||
Sbjct: 116447 atctgtctaaaaaccttt 116430
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 534 tacctcgagtaaatcatccagaatattattcctatattctttctccagcaacaaacttct 593
|||||| ||||||||||| ||||||||||| |||||||| ||||| || ||| |||||
Sbjct: 115857 tacctcaagtaaatcatcaagaatattatttctatattccttctctagtaactggcttct 115798
Query: 594 atcttcagctatcatttgagactg 617
|||||||||| ||||||||||
Sbjct: 115797 ttcttcagctaaactttgagactg 115774
>gb|AACV01013747.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013747, whole
genome shotgun sequence
Length = 41792
Score = 232 bits (117), Expect = 2e-058
Identities = 189/213 (88%)
Strand = Plus / Minus
Query: 326 accttttagagttaaggatcattataaggtcaagagtcttctgattagttagcaatgaga 385
||||||| ||||| || |||||||||||||||||||| ||||| ||| | ||||| || |
Sbjct: 12069 acctttttgagttgagaatcattataaggtcaagagttttctggttactgagcaaagata 12010
Query: 386 ttgctgacgagatctctacaagcatgttctccaaactgtcaggagcatgctgctggagaa 445
| ||||| |||| |||| ||||||| ||||| ||| | |||||||||| |||||| ||||
Sbjct: 12009 tagctgatgagacctctgcaagcatattctctaaattttcaggagcatactgctgcagaa 11950
Query: 446 caaaaggtgagacagcttgcacttgatgctgtagagatgatgtgtctgcattcctcatct 505
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 11949 caaaaggtgagacagcttgcacttgatgctgtagagatgatgtatcagcattcctcatct 11890
Query: 506 cccctaagcgttgagtcaaaaatgattttacct 538
||||||||||||| |||||||||| | ||||||
Sbjct: 11889 cccctaagcgttgggtcaaaaatgctcttacct 11857
Score = 147 bits (74), Expect = 8e-033
Identities = 128/146 (87%)
Strand = Plus / Minus
Query: 49 tacagtcatccagctaattgactaacacttgagctcagtaaagtattgatctctccaatt 108
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 12736 tacagtcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaatt 12677
Query: 109 atatacactggtcttccatcaaaaacagacgacagtgtcgactcacacagcttctttagt 168
|||| ||| || || |||||||| |||| || || || | ||| || |||||||| |||
Sbjct: 12676 atatgcaccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagt 12617
Query: 169 tcccttgtttttgtaattgctgcctc 194
||||| ||||||||||||||||||||
Sbjct: 12616 tccctggtttttgtaattgctgcctc 12591
Score = 115 bits (58), Expect = 3e-023
Identities = 118/138 (85%)
Strand = Plus / Minus
Query: 194 cttgctttggccatgatgatgacagtgcgttttgcagctccatacgcttaacagataaat 253
||||||| ||||| ||||| || ||||| |||||||||||||| |||||||| || ||||
Sbjct: 12322 cttgcttaggccaggatgacgaaagtgcattttgcagctccattcgcttaactgacaaat 12263
Query: 254 cacctaaaccttcccgtagttttacttcgtgatgcttcttctcttctaagcttgaaacta 313
||||||| ||||| |||||||| || || ||||||||||| |||||||| |||| ||||
Sbjct: 12262 cacctaagccttctcgtagtttcacctcatgatgcttcttgtcttctaatgttgatacta 12203
Query: 314 atctatccagaaaccttt 331
|||| || | ||||||||
Sbjct: 12202 atctgtctaaaaaccttt 12185
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 534 tacctcgagtaaatcatccagaatattattcctatattctttctccagcaacaaacttct 593
|||||| ||||||||||| ||||||||||| |||||||| ||||| || ||| |||||
Sbjct: 11612 tacctcaagtaaatcatcaagaatattatttctatattccttctctagtaactggcttct 11553
Query: 594 atcttcagctatcatttgagactg 617
|||||||||| ||||||||||
Sbjct: 11552 ttcttcagctaaactttgagactg 11529
>gb|CH401212.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000049
genomic scaffold, whole genome shotgun sequence
Length = 3314418
Score = 232 bits (117), Expect = 2e-058
Identities = 189/213 (88%)
Strand = Plus / Minus
Query: 326 accttttagagttaaggatcattataaggtcaagagtcttctgattagttagcaatgaga 385
||||||| ||||| || |||||||||||||||||||| ||||| ||| | ||||| || |
Sbjct: 715020 acctttttgagttgagaatcattataaggtcaagagttttctggttactgagcaaagata 714961
Query: 386 ttgctgacgagatctctacaagcatgttctccaaactgtcaggagcatgctgctggagaa 445
| ||||| |||| |||| ||||||| ||||| ||| | |||||||||| |||||| ||||
Sbjct: 714960 tagctgatgagacctctgcaagcatattctctaaattttcaggagcatactgctgcagaa 714901
Query: 446 caaaaggtgagacagcttgcacttgatgctgtagagatgatgtgtctgcattcctcatct 505
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 714900 caaaaggtgagacagcttgcacttgatgctgtagagatgatgtatcagcattcctcatct 714841
Query: 506 cccctaagcgttgagtcaaaaatgattttacct 538
||||||||||||| |||||||||| | ||||||
Sbjct: 714840 cccctaagcgttgggtcaaaaatgctcttacct 714808
Score = 147 bits (74), Expect = 8e-033
Identities = 128/146 (87%)
Strand = Plus / Minus
Query: 49 tacagtcatccagctaattgactaacacttgagctcagtaaagtattgatctctccaatt 108
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 715687 tacagtcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaatt 715628
Query: 109 atatacactggtcttccatcaaaaacagacgacagtgtcgactcacacagcttctttagt 168
|||| ||| || || |||||||| |||| || || || | ||| || |||||||| |||
Sbjct: 715627 atatgcaccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagt 715568
Query: 169 tcccttgtttttgtaattgctgcctc 194
||||| ||||||||||||||||||||
Sbjct: 715567 tccctggtttttgtaattgctgcctc 715542
Score = 115 bits (58), Expect = 3e-023
Identities = 118/138 (85%)
Strand = Plus / Minus
Query: 194 cttgctttggccatgatgatgacagtgcgttttgcagctccatacgcttaacagataaat 253
||||||| ||||| ||||| || ||||| |||||||||||||| |||||||| || ||||
Sbjct: 715273 cttgcttaggccaggatgacgaaagtgcattttgcagctccattcgcttaactgacaaat 715214
Query: 254 cacctaaaccttcccgtagttttacttcgtgatgcttcttctcttctaagcttgaaacta 313
||||||| ||||| |||||||| || || ||||||||||| |||||||| |||| ||||
Sbjct: 715213 cacctaagccttctcgtagtttcacctcatgatgcttcttgtcttctaatgttgatacta 715154
Query: 314 atctatccagaaaccttt 331
|||| || | ||||||||
Sbjct: 715153 atctgtctaaaaaccttt 715136
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 534 tacctcgagtaaatcatccagaatattattcctatattctttctccagcaacaaacttct 593
|||||| ||||||||||| ||||||||||| |||||||| ||||| || ||| |||||
Sbjct: 714563 tacctcaagtaaatcatcaagaatattatttctatattccttctctagtaactggcttct 714504
Query: 594 atcttcagctatcatttgagactg 617
|||||||||| ||||||||||
Sbjct: 714503 ttcttcagctaaactttgagactg 714480
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 232 bits (117), Expect = 2e-058
Identities = 189/213 (88%)
Strand = Plus / Minus
Query: 326 accttttagagttaaggatcattataaggtcaagagtcttctgattagttagcaatgaga 385
||||||| ||||| || |||||||||||||||||||| ||||| ||| | ||||| || |
Sbjct: 12021141 acctttttgagttgagaatcattataaggtcaagagttttctggttactgagcaaagata 12021082
Query: 386 ttgctgacgagatctctacaagcatgttctccaaactgtcaggagcatgctgctggagaa 445
| ||||| |||| |||| ||||||| ||||| ||| | |||||||||| |||||| ||||
Sbjct: 12021081 tagctgatgagacctctgcaagcatattctctaaattttcaggagcatactgctgcagaa 12021022
Query: 446 caaaaggtgagacagcttgcacttgatgctgtagagatgatgtgtctgcattcctcatct 505
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 12021021 caaaaggtgagacagcttgcacttgatgctgtagagatgatgtatcagcattcctcatct 12020962
Query: 506 cccctaagcgttgagtcaaaaatgattttacct 538
||||||||||||| |||||||||| | ||||||
Sbjct: 12020961 cccctaagcgttgggtcaaaaatgctcttacct 12020929
Score = 147 bits (74), Expect = 8e-033
Identities = 128/146 (87%)
Strand = Plus / Minus
Query: 49 tacagtcatccagctaattgactaacacttgagctcagtaaagtattgatctctccaatt 108
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 12021808 tacagtcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaatt 12021749
Query: 109 atatacactggtcttccatcaaaaacagacgacagtgtcgactcacacagcttctttagt 168
|||| ||| || || |||||||| |||| || || || | ||| || |||||||| |||
Sbjct: 12021748 atatgcaccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagt 12021689
Query: 169 tcccttgtttttgtaattgctgcctc 194
||||| ||||||||||||||||||||
Sbjct: 12021688 tccctggtttttgtaattgctgcctc 12021663
Score = 115 bits (58), Expect = 3e-023
Identities = 118/138 (85%)
Strand = Plus / Minus
Query: 194 cttgctttggccatgatgatgacagtgcgttttgcagctccatacgcttaacagataaat 253
||||||| ||||| ||||| || ||||| |||||||||||||| |||||||| || ||||
Sbjct: 12021394 cttgcttaggccaggatgacgaaagtgcattttgcagctccattcgcttaactgacaaat 12021335
Query: 254 cacctaaaccttcccgtagttttacttcgtgatgcttcttctcttctaagcttgaaacta 313
||||||| ||||| |||||||| || || ||||||||||| |||||||| |||| ||||
Sbjct: 12021334 cacctaagccttctcgtagtttcacctcatgatgcttcttgtcttctaatgttgatacta 12021275
Query: 314 atctatccagaaaccttt 331
|||| || | ||||||||
Sbjct: 12021274 atctgtctaaaaaccttt 12021257
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 534 tacctcgagtaaatcatccagaatattattcctatattctttctccagcaacaaacttct 593
|||||| ||||||||||| ||||||||||| |||||||| ||||| || ||| |||||
Sbjct: 12020684 tacctcaagtaaatcatcaagaatattatttctatattccttctctagtaactggcttct 12020625
Query: 594 atcttcagctatcatttgagactg 617
|||||||||| ||||||||||
Sbjct: 12020624 ttcttcagctaaactttgagactg 12020601
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 232 bits (117), Expect = 2e-058
Identities = 189/213 (88%)
Strand = Plus / Minus
Query: 326 accttttagagttaaggatcattataaggtcaagagtcttctgattagttagcaatgaga 385
||||||| ||||| || |||||||||||||||||||| ||||| ||| | ||||| || |
Sbjct: 12279292 acctttttgagttgagaatcattataaggtcaagagttttctggttactgagcaaagata 12279233
Query: 386 ttgctgacgagatctctacaagcatgttctccaaactgtcaggagcatgctgctggagaa 445
| ||||| |||| |||| ||||||| ||||| ||| | |||||||||| |||||| ||||
Sbjct: 12279232 tagctgatgagacctctgcaagcatattctctaaattttcaggagcatactgctgcagaa 12279173
Query: 446 caaaaggtgagacagcttgcacttgatgctgtagagatgatgtgtctgcattcctcatct 505
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 12279172 caaaaggtgagacagcttgcacttgatgctgtagagatgatgtatcagcattcctcatct 12279113
Query: 506 cccctaagcgttgagtcaaaaatgattttacct 538
||||||||||||| |||||||||| | ||||||
Sbjct: 12279112 cccctaagcgttgggtcaaaaatgctcttacct 12279080
Score = 147 bits (74), Expect = 8e-033
Identities = 128/146 (87%)
Strand = Plus / Minus
Query: 49 tacagtcatccagctaattgactaacacttgagctcagtaaagtattgatctctccaatt 108
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 12279959 tacagtcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaatt 12279900
Query: 109 atatacactggtcttccatcaaaaacagacgacagtgtcgactcacacagcttctttagt 168
|||| ||| || || |||||||| |||| || || || | ||| || |||||||| |||
Sbjct: 12279899 atatgcaccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagt 12279840
Query: 169 tcccttgtttttgtaattgctgcctc 194
||||| ||||||||||||||||||||
Sbjct: 12279839 tccctggtttttgtaattgctgcctc 12279814
Score = 115 bits (58), Expect = 3e-023
Identities = 118/138 (85%)
Strand = Plus / Minus
Query: 194 cttgctttggccatgatgatgacagtgcgttttgcagctccatacgcttaacagataaat 253
||||||| ||||| ||||| || ||||| |||||||||||||| |||||||| || ||||
Sbjct: 12279545 cttgcttaggccaggatgacgaaagtgcattttgcagctccattcgcttaactgacaaat 12279486
Query: 254 cacctaaaccttcccgtagttttacttcgtgatgcttcttctcttctaagcttgaaacta 313
||||||| ||||| |||||||| || || ||||||||||| |||||||| |||| ||||
Sbjct: 12279485 cacctaagccttctcgtagtttcacctcatgatgcttcttgtcttctaatgttgatacta 12279426
Query: 314 atctatccagaaaccttt 331
|||| || | ||||||||
Sbjct: 12279425 atctgtctaaaaaccttt 12279408
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 534 tacctcgagtaaatcatccagaatattattcctatattctttctccagcaacaaacttct 593
|||||| ||||||||||| ||||||||||| |||||||| ||||| || ||| |||||
Sbjct: 12278835 tacctcaagtaaatcatcaagaatattatttctatattccttctctagtaactggcttct 12278776
Query: 594 atcttcagctatcatttgagactg 617
|||||||||| ||||||||||
Sbjct: 12278775 ttcttcagctaaactttgagactg 12278752
>gb|CL519980.1|CL519980 SAI9B06 Flanking Sequence Tag of Oryza sativa T-DNA insertion lines
Oryza sativa (japonica cultivar-group) genomic, DNA
sequence
Length = 216
Score = 147 bits (74), Expect = 8e-033
Identities = 128/146 (87%)
Strand = Plus / Plus
Query: 49 tacagtcatccagctaattgactaacacttgagctcagtaaagtattgatctctccaatt 108
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 9 tacagtcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaatt 68
Query: 109 atatacactggtcttccatcaaaaacagacgacagtgtcgactcacacagcttctttagt 168
|||| ||| || || |||||||| |||| || || || | ||| || |||||||| |||
Sbjct: 69 atatgcaccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagt 128
Query: 169 tcccttgtttttgtaattgctgcctc 194
||||| ||||||||||||||||||||
Sbjct: 129 tccctggtttttgtaattgctgcctc 154
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,003,216
Number of Sequences: 438736
Number of extensions: 1003216
Number of successful extensions: 4434
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4360
Number of HSP's gapped (non-prelim): 61
length of query: 627
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 606
effective length of database: 2,791,206,460
effective search space: 1691471114760
effective search space used: 1691471114760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)