BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478343.2.1
(694 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB647449.1|CB647449 OSJNEb10G04.r OSJNEb Oryza sativa (j... 82 5e-013
gb|CB683255.1|CB683255 OSJNEf11G13.r OSJNEf Oryza sativa (j... 82 5e-013
ref|NT_107075.1| Oryza sativa (japonica cultivar-group) 82 5e-013
gb|AACV01020393.1| Oryza sativa (japonica cultivar-group) c... 82 5e-013
dbj|AP006173.3| Oryza sativa (japonica cultivar-group) geno... 82 5e-013
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 82 5e-013
gb|C72832.1|C72832 C72832 Rice panicle at flowering stage O... 80 2e-012
gb|AU182357.1|AU182357 AU182357 Rice panicle at flowering s... 80 2e-012
gb|AC144738.2| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
gb|AACV01011010.1| Oryza sativa (japonica cultivar-group) c... 80 2e-012
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 80 2e-012
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
gb|AU077934.1|AU077934 AU077934 Rice callus Oryza sativa (j... 68 7e-009
gb|CB659466.1|CB659466 OSJNEc16H18.r OSJNEc Oryza sativa (j... 68 7e-009
gb|CB666604.1|CB666604 OSJNEd13J04.r OSJNEd Oryza sativa (j... 68 7e-009
dbj|AK109806.1| Oryza sativa (japonica cultivar-group) cDNA... 68 7e-009
gb|AACV01010151.1| Oryza sativa (japonica cultivar-group) c... 68 7e-009
ref|XM_473231.1| Oryza sativa (japonica cultivar-group), p... 68 7e-009
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 68 7e-009
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 68 7e-009
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 68 7e-009
emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromoso... 68 7e-009
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 68 7e-009
gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-grou... 62 4e-007
gb|AACV01021651.1| Oryza sativa (japonica cultivar-group) c... 62 4e-007
ref|NM_196703.1| Oryza sativa (japonica cultivar-group) put... 62 4e-007
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 62 4e-007
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
gb|AQ916649.1|AQ916649 nbeb0066N22r CUGI Rice BAC Library (... 60 2e-006
dbj|AK109457.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
gb|AACV01002128.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
ref|NM_192094.1| Oryza sativa (japonica cultivar-group), p... 60 2e-006
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 60 2e-006
dbj|AP003455.2| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
dbj|AP003452.3| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|AU055724.1|AU055724 AU055724 Oryza sativa mature leaf Ni... 58 7e-006
gb|CB645026.1|CB645026 OSJNEb06H20.r OSJNEb Oryza sativa (j... 56 3e-005
dbj|AK065987.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
dbj|AK105912.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
dbj|AK119544.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 ... 56 3e-005
gb|AACV01007694.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
gb|AACV01016342.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
ref|XM_469348.1| Oryza sativa (japonica cultivar-group), mRNA 56 3e-005
ref|XM_478346.1| Oryza sativa (japonica cultivar-group), mRNA 56 3e-005
ref|XM_506362.1| PREDICTED Oryza sativa (japonica cultivar-... 56 3e-005
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 56 3e-005
dbj|AP005185.4| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|AU055875.1|AU055875 AU055875 Oryza sativa mature leaf Ni... 52 4e-004
gb|CV728477.1|CV728477 COLD--01-J03.b1 Cold treated rice le... 52 4e-004
dbj|AP005917.2| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|AACV01003586.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
dbj|AK071819.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
ref|NT_107124.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|AACV01002157.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01008641.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|XM_463421.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
dbj|AP003373.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|CH401184.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AC146522.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AK101107.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK101659.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK103824.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK111866.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
gb|AACV01001928.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
gb|AACV01010259.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
gb|AACV01010300.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
dbj|AP003607.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
dbj|AP004367.4| Oryza sativa (japonica cultivar-group) geno... 48 0.006
ref|NM_192244.1| Oryza sativa (japonica cultivar-group), p... 48 0.006
ref|XM_473460.1| Oryza sativa (japonica cultivar-group), p... 48 0.006
ref|XM_473518.1| Oryza sativa (japonica cultivar-group), p... 48 0.006
emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromoso... 48 0.006
emb|AL606628.3|OSJN00055 Oryza sativa genomic DNA, chromoso... 48 0.006
gb|AU183565.1|AU183565 AU183565 Rice callus (2001) Oryza sa... 46 0.025
dbj|AK062283.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
dbj|AK063307.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
dbj|AK064709.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
dbj|AK105398.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
dbj|AK119905.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
dbj|AK121682.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 ... 46 0.025
gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 ... 46 0.025
gb|AACV01000302.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
gb|AACV01007731.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
ref|NM_192093.1| Oryza sativa (japonica cultivar-group), p... 46 0.025
ref|XM_469185.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.025
ref|XM_469427.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.025
ref|NT_107185.1| Oryza sativa (japonica cultivar-group) 46 0.025
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|AC091670.7| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CB644747.1|CB644747 OSJNEb06B14.r OSJNEb Oryza sativa (j... 44 0.099
dbj|AP003941.1| Oryza sativa (japonica cultivar-group) chro... 44 0.099
dbj|AP004327.1| Oryza sativa (japonica cultivar-group) chro... 44 0.099
gb|AC093094.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.099
dbj|AK062590.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.099
dbj|AK066178.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.099
dbj|AK107291.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.099
dbj|AK119766.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.099
gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbar... 44 0.099
dbj|AP003974.3| Oryza sativa (japonica cultivar-group) geno... 44 0.099
dbj|AP003705.3| Oryza sativa (japonica cultivar-group) geno... 44 0.099
dbj|AP005296.5| Oryza sativa (japonica cultivar-group) geno... 44 0.099
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 44 0.099
gb|AACV01003587.1| Oryza sativa (japonica cultivar-group) c... 44 0.099
gb|AACV01014458.1| Oryza sativa (japonica cultivar-group) c... 44 0.099
gb|AACV01016586.1| Oryza sativa (japonica cultivar-group) c... 44 0.099
gb|AACV01020984.1| Oryza sativa (japonica cultivar-group) c... 44 0.099
ref|NM_195166.1| Oryza sativa (japonica cultivar-group) put... 44 0.099
ref|NT_080061.1| Oryza sativa (japonica cultivar-group) chr... 44 0.099
ref|NM_186324.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.099
ref|XM_464569.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.099
ref|XM_464571.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.099
dbj|AP003617.3| Oryza sativa (japonica cultivar-group) geno... 44 0.099
dbj|AP004571.3| Oryza sativa (japonica cultivar-group) geno... 44 0.099
gb|CH401245.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.099
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.099
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.099
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.099
gb|AQ578533.1|AQ578533 nbxb0093G11f CUGI Rice BAC Library O... 42 0.39
gb|CB646316.1|CB646316 OSJNEb08L08.r OSJNEb Oryza sativa (j... 42 0.39
gb|CB671580.1|CB671580 OSJNEe05D17.r OSJNEe Oryza sativa (j... 42 0.39
gb|CB678982.1|CB678982 OSJNEf01P03.r OSJNEf Oryza sativa (j... 42 0.39
dbj|AP004252.1| Oryza sativa (japonica cultivar-group) chro... 42 0.39
gb|AC108505.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
dbj|AK105236.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.39
gb|AC079887.17| Oryza sativa (japonica cultivar-group) chro... 42 0.39
gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 ... 42 0.39
dbj|AP004854.2| Oryza sativa (japonica cultivar-group) geno... 42 0.39
gb|AC129718.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
gb|AACV01004102.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
gb|AACV01007956.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
gb|AACV01008121.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
gb|AACV01012463.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
gb|AACV01013183.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
ref|XM_464391.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.39
ref|XM_465318.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.39
ref|XM_469829.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.39
ref|XM_470006.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.39
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 42 0.39
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 42 0.39
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 42 0.39
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 42 0.39
dbj|AP004046.2| Oryza sativa (japonica cultivar-group) geno... 42 0.39
dbj|AP005913.3| Oryza sativa (japonica cultivar-group) geno... 42 0.39
dbj|AP003508.3| Oryza sativa (japonica cultivar-group) geno... 42 0.39
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
>gb|CB647449.1|CB647449 OSJNEb10G04.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10G04 3', mRNA sequence
Length = 772
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 626 gcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcg 685
||||| ||||||||||||||||||||||| || | ||||| ||||||||| | |||||||
Sbjct: 465 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 524
Query: 686 agcacctcc 694
|||||||||
Sbjct: 525 agcacctcc 533
>gb|CB683255.1|CB683255 OSJNEf11G13.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11G13 3', mRNA sequence
Length = 772
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 626 gcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcg 685
||||| ||||||||||||||||||||||| || | ||||| ||||||||| | |||||||
Sbjct: 464 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 523
Query: 686 agcacctcc 694
|||||||||
Sbjct: 524 agcacctcc 532
>ref|NT_107075.1| Oryza sativa (japonica cultivar-group)
Length = 389359
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 626 gcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcg 685
||||| ||||||||||||||||||||||| || | ||||| ||||||||| | |||||||
Sbjct: 330029 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 329970
Query: 686 agcacctcc 694
|||||||||
Sbjct: 329969 agcacctcc 329961
>gb|AACV01020393.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020393, whole
genome shotgun sequence
Length = 17450
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 626 gcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcg 685
||||| ||||||||||||||||||||||| || | ||||| ||||||||| | |||||||
Sbjct: 4238 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 4179
Query: 686 agcacctcc 694
|||||||||
Sbjct: 4178 agcacctcc 4170
>dbj|AP006173.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0217C03
Length = 58309
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 626 gcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcg 685
||||| ||||||||||||||||||||||| || | ||||| ||||||||| | |||||||
Sbjct: 27633 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 27574
Query: 686 agcacctcc 694
|||||||||
Sbjct: 27573 agcacctcc 27565
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 626 gcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcg 685
||||| ||||||||||||||||||||||| || | ||||| ||||||||| | |||||||
Sbjct: 9425360 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 9425301
Query: 686 agcacctcc 694
|||||||||
Sbjct: 9425300 agcacctcc 9425292
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 626 gcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcg 685
||||| ||||||||||||||||||||||| || | ||||| ||||||||| | |||||||
Sbjct: 18899171 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 18899112
Query: 686 agcacctcc 694
|||||||||
Sbjct: 18899111 agcacctcc 18899103
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 81.8 bits (41), Expect = 5e-013
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 626 gcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcg 685
||||| ||||||||||||||||||||||| || | ||||| ||||||||| | |||||||
Sbjct: 19920547 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 19920488
Query: 686 agcacctcc 694
|||||||||
Sbjct: 19920487 agcacctcc 19920479
>gb|C72832.1|C72832 C72832 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2339_1A, mRNA sequence
Length = 418
Score = 79.8 bits (40), Expect = 2e-012
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 628 ctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcg 683
|||||| || |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 262 ctccaccgtcgagttccagccgcagtgggtgaggaagccgcccaccgccgggtgcg 207
>gb|AU182357.1|AU182357 AU182357 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2520, mRNA sequence
Length = 416
Score = 79.8 bits (40), Expect = 2e-012
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 628 ctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcg 683
|||||| || |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 251 ctccaccgtcgagttccagccgcagtgggtgaggaagccgcccaccgccgggtgcg 196
>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0029B02, complete sequence
Length = 156649
Score = 79.8 bits (40), Expect = 2e-012
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 628 ctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcg 683
|||||| || |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 78380 ctccaccgtcgagttccagccgcagtgggtgaggaagccgcccaccgccgggtgcg 78435
>gb|AACV01011010.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011010, whole
genome shotgun sequence
Length = 13890
Score = 79.8 bits (40), Expect = 2e-012
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 628 ctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcg 683
|||||| || |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 3177 ctccaccgtcgagttccagccgcagtgggtgaggaagccgcccaccgccgggtgcg 3232
>ref|NT_107223.1| Oryza sativa (japonica cultivar-group)
Length = 1494033
Score = 79.8 bits (40), Expect = 2e-012
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 628 ctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcg 683
|||||| || |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 645185 ctccaccgtcgagttccagccgcagtgggtgaggaagccgcccaccgccgggtgcg 645240
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 79.8 bits (40), Expect = 2e-012
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 628 ctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcg 683
|||||| || |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 4461202 ctccaccgtcgagttccagccgcagtgggtgaggaagccgcccaccgccgggtgcg 4461257
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 79.8 bits (40), Expect = 2e-012
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 628 ctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcg 683
|||||| || |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 4461202 ctccaccgtcgagttccagccgcagtgggtgaggaagccgcccaccgccgggtgcg 4461257
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 646 gccgcagtgggtgaagaagccgcccacgg 674
|||| ||||||||||||||||||| ||||
Sbjct: 23778058 gccggagtgggtgaagaagccgccgacgg 23778086
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 79.8 bits (40), Expect = 2e-012
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 628 ctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcg 683
|||||| || |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 4567913 ctccaccgtcgagttccagccgcagtgggtgaggaagccgcccaccgccgggtgcg 4567968
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 646 gccgcagtgggtgaagaagccgcccacgg 674
|||| ||||||||||||||||||| ||||
Sbjct: 24099319 gccggagtgggtgaagaagccgccgacgg 24099347
>gb|AU077934.1|AU077934 AU077934 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12519_12Z, mRNA sequence
Length = 484
Score = 67.9 bits (34), Expect = 7e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 632 acggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagca 689
||||||||||||||||||||||| || | ||||| ||||||||| | |||||||||||
Sbjct: 58 acggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcgagca 1
>gb|CB659466.1|CB659466 OSJNEc16H18.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16H18 3', mRNA sequence
Length = 738
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 625 ggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgc 684
|||||||||||||||||||||||||||||| |||| | ||| || ||||||| |||| |
Sbjct: 360 ggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtgccc 419
Query: 685 gagcac 690
||||||
Sbjct: 420 gagcac 425
>gb|CB666604.1|CB666604 OSJNEd13J04.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13J04 3', mRNA sequence
Length = 829
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 625 ggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgc 684
|||||||||||||||||||||||||||||| |||| | ||| || ||||||| |||| |
Sbjct: 526 ggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtgccc 585
Query: 685 gagcac 690
||||||
Sbjct: 586 gagcac 591
>dbj|AK109806.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-F12, full
insert sequence
Length = 1692
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 625 ggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgc 684
|||||||||||||||||||||||||||||| |||| | ||| || ||||||| |||| |
Sbjct: 1296 ggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtgccc 1237
Query: 685 gagcac 690
||||||
Sbjct: 1236 gagcac 1231
>gb|AACV01010151.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010151, whole
genome shotgun sequence
Length = 32707
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 625 ggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgc 684
|||||||||||||||||||||||||||||| |||| | ||| || ||||||| |||| |
Sbjct: 12675 ggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtgccc 12616
Query: 685 gagcac 690
||||||
Sbjct: 12615 gagcac 12610
>ref|XM_473231.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1608
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 625 ggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgc 684
|||||||||||||||||||||||||||||| |||| | ||| || ||||||| |||| |
Sbjct: 1299 ggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtgccc 1240
Query: 685 gagcac 690
||||||
Sbjct: 1239 gagcac 1234
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 625 ggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgc 684
|||||||||||||||||||||||||||||| |||| | ||| || ||||||| |||| |
Sbjct: 10992 ggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtgccc 11051
Query: 685 gagcac 690
||||||
Sbjct: 11052 gagcac 11057
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 628 ctccacggtggagttccagccgcagtgg 655
||||| ||||||||||||||||||||||
Sbjct: 2066173 ctccatggtggagttccagccgcagtgg 2066146
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 628 ctccacggtggagttccagccgcagtgg 655
||||| ||||||||||||||||||||||
Sbjct: 1594515 ctccatggtggagttccagccgcagtgg 1594542
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 625 ggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgc 684
|||||||||||||||||||||||||||||| |||| | ||| || ||||||| |||| |
Sbjct: 4080044 ggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtgccc 4080103
Query: 685 gagcac 690
||||||
Sbjct: 4080104 gagcac 4080109
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 628 ctccacggtggagttccagccgcagtgg 655
||||| ||||||||||||||||||||||
Sbjct: 6110684 ctccatggtggagttccagccgcagtgg 6110657
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 628 ctccacggtggagttccagccgcagtgg 655
||||| ||||||||||||||||||||||
Sbjct: 5649756 ctccatggtggagttccagccgcagtgg 5649783
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 625 ggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgc 684
|||||||||||||||||||||||||||||| |||| | ||| || ||||||| |||| |
Sbjct: 23224143 ggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtgccc 23224202
Query: 685 gagcac 690
||||||
Sbjct: 23224203 gagcac 23224208
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 638 gagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
|||||||| ||||||||||||| ||||| ||||| ||| ||||||| |||||
Sbjct: 3423486 gagttccacccgcagtgggtgacgaagcaccccaccgcccggtgcgccagcac 3423538
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 628 ctccacggtggagttccagccgcagtgg 655
||||| ||||||||||||||||||||||
Sbjct: 25254783 ctccatggtggagttccagccgcagtgg 25254756
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 628 ctccacggtggagttccagccgcagtgg 655
||||| ||||||||||||||||||||||
Sbjct: 24793855 ctccatggtggagttccagccgcagtgg 24793882
>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10,
complete sequence
Length = 141545
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 625 ggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgc 684
|||||||||||||||||||||||||||||| |||| | ||| || ||||||| |||| |
Sbjct: 10992 ggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtgccc 11051
Query: 685 gagcac 690
||||||
Sbjct: 11052 gagcac 11057
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 625 ggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgc 684
|||||||||||||||||||||||||||||| |||| | ||| || ||||||| |||| |
Sbjct: 26234415 ggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtgccc 26234474
Query: 685 gagcac 690
||||||
Sbjct: 26234475 gagcac 26234480
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 628 ctccacggtggagttccagccgcagtgg 655
||||| ||||||||||||||||||||||
Sbjct: 28289522 ctccatggtggagttccagccgcagtgg 28289495
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 628 ctccacggtggagttccagccgcagtgg 655
||||| ||||||||||||||||||||||
Sbjct: 27817864 ctccatggtggagttccagccgcagtgg 27817891
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18,
complete sequence
Length = 144720
Score = 61.9 bits (31), Expect = 4e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 636 tggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcacctcc 694
||||||||||||||||||| |||| |||| || | ||||| ||||| ||||||||||||
Sbjct: 97583 tggagttccagccgcagtgcgtgaggaaggcggcgacggcggggtgggcgagcacctcc 97641
>gb|AACV01021651.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021651, whole
genome shotgun sequence
Length = 11640
Score = 61.9 bits (31), Expect = 4e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 636 tggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcacctcc 694
||||||||||||||||||| |||| |||| || | ||||| ||||| ||||||||||||
Sbjct: 10228 tggagttccagccgcagtgcgtgaggaaggcggcgacggcggggtgggcgagcacctcc 10286
>ref|NM_196703.1| Oryza sativa (japonica cultivar-group) putative putative
glucosyltransferase (OSJNBa0046P18.12), mRNA
Length = 1512
Score = 61.9 bits (31), Expect = 4e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 636 tggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcacctcc 694
||||||||||||||||||| |||| |||| || | ||||| ||||| ||||||||||||
Sbjct: 1189 tggagttccagccgcagtgcgtgaggaaggcggcgacggcggggtgggcgagcacctcc 1131
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 61.9 bits (31), Expect = 4e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 636 tggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcacctcc 694
||||||||||||||||||| |||| |||| || | ||||| ||||| ||||||||||||
Sbjct: 2111851 tggagttccagccgcagtgcgtgaggaaggcggcgacggcggggtgggcgagcacctcc 2111909
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 61.9 bits (31), Expect = 4e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 636 tggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcacctcc 694
||||||||||||||||||| |||| |||| || | ||||| ||||| ||||||||||||
Sbjct: 3326646 tggagttccagccgcagtgcgtgaggaaggcggcgacggcggggtgggcgagcacctcc 3326704
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 61.9 bits (31), Expect = 4e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 636 tggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcacctcc 694
||||||||||||||||||| |||| |||| || | ||||| ||||| ||||||||||||
Sbjct: 14192440 tggagttccagccgcagtgcgtgaggaaggcggcgacggcggggtgggcgagcacctcc 14192498
Score = 44.1 bits (22), Expect = 0.099
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 640 gttccagccgcagtgggtgaagaagccgcccacggccgggtg 681
|||||||||||||||||| | ||| |||||| | ||||||||
Sbjct: 5069945 gttccagccgcagtgggtcaggaacccgcccgccgccgggtg 5069904
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 61.9 bits (31), Expect = 4e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 636 tggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcacctcc 694
||||||||||||||||||| |||| |||| || | ||||| ||||| ||||||||||||
Sbjct: 15380220 tggagttccagccgcagtgcgtgaggaaggcggcgacggcggggtgggcgagcacctcc 15380278
Score = 44.1 bits (22), Expect = 0.099
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 640 gttccagccgcagtgggtgaagaagccgcccacggccgggtg 681
|||||||||||||||||| | ||| |||||| | ||||||||
Sbjct: 5064417 gttccagccgcagtgggtcaggaacccgcccgccgccgggtg 5064376
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 61.9 bits (31), Expect = 4e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 636 tggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcacctcc 694
||||||||||||||||||| |||| |||| || | ||||| ||||| ||||||||||||
Sbjct: 15388461 tggagttccagccgcagtgcgtgaggaaggcggcgacggcggggtgggcgagcacctcc 15388519
Score = 44.1 bits (22), Expect = 0.099
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 640 gttccagccgcagtgggtgaagaagccgcccacggccgggtg 681
|||||||||||||||||| | ||| |||||| | ||||||||
Sbjct: 5065204 gttccagccgcagtgggtcaggaacccgcccgccgccgggtg 5065163
>gb|AQ916649.1|AQ916649 nbeb0066N22r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0066N22r, DNA sequence
Length = 856
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 633 cggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
||||||||||||| |||||||| || | ||||| ||||||||| | ||||||||||||
Sbjct: 438 cggtggagttccacccgcagtgcgtcacgaagcagcccacggcggcgtgcgcgagcac 495
>dbj|AK109457.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C10, full
insert sequence
Length = 1849
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 633 cggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
||||||||||||| |||||||| || | ||||| ||||||||| | ||||||||||||
Sbjct: 1194 cggtggagttccacccgcagtgcgtcacgaagcagcccacggcggcgtgcgcgagcac 1137
>gb|AACV01002128.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002128, whole
genome shotgun sequence
Length = 69109
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 633 cggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
||||||||||||| |||||||| || | ||||| ||||||||| | ||||||||||||
Sbjct: 35605 cggtggagttccacccgcagtgcgtcacgaagcagcccacggcggcgtgcgcgagcac 35662
Score = 46.1 bits (23), Expect = 0.025
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 608 ggcacgccctccgacacggcctccacggtggagttccagccgcagtgggtgaagaagccg 667
||||||||| ||| || |||||| ||| |||||||| |||||||| || | |||||
Sbjct: 40061 ggcacgcccgccgccagcgcctccgtggtcgagttccacccgcagtgcgtcacgaagcaa 40120
Query: 668 cccacggccgggtgcgcgagcac 690
|| ||||| ||||||||||||||
Sbjct: 40121 ccgacggcggggtgcgcgagcac 40143
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 633 cggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
||||||||||||| |||||||| || | ||||| ||||||||| | ||||||||||||
Sbjct: 28382773 cggtggagttccacccgcagtgcgtcacgaagcagcccacggcggcgtgcgcgagcac 28382716
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 638 gagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
|||||||| |||||||| || | |||||||||||| |||| |||||| |||||
Sbjct: 28922460 gagttccacccgcagtgcgtcacgaagccgcccaccgccgcgtgcgccagcac 28922512
Score = 48.1 bits (24), Expect = 0.006
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 622 cacggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtg 681
||||||||||| || |||||||| |||||||| || | ||| ||||| |||||||||||
Sbjct: 25673614 cacggcctccagcgtcgagttccacccgcagtgcgtcacgaacccgccgacggccgggtg 25673555
Score = 46.1 bits (23), Expect = 0.025
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 608 ggcacgccctccgacacggcctccacggtggagttccagccgcagtgggtgaagaagccg 667
||||||||| ||| || |||||| ||| |||||||| |||||||| || | |||||
Sbjct: 28378322 ggcacgcccgccgccagcgcctccgtggtcgagttccacccgcagtgcgtcacgaagcaa 28378263
Query: 668 cccacggccgggtgcgcgagcac 690
|| ||||| ||||||||||||||
Sbjct: 28378262 ccgacggcggggtgcgcgagcac 28378240
>ref|NM_192094.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1377
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 633 cggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
||||||||||||| |||||||| || | ||||| ||||||||| | ||||||||||||
Sbjct: 1072 cggtggagttccacccgcagtgcgtcacgaagcagcccacggcggcgtgcgcgagcac 1015
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 633 cggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
||||||||||||| |||||||| || | ||||| ||||||||| | ||||||||||||
Sbjct: 2830156 cggtggagttccacccgcagtgcgtcacgaagcagcccacggcggcgtgcgcgagcac 2830099
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 638 gagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
|||||||| |||||||| || | |||||||||||| |||| |||||| |||||
Sbjct: 3369843 gagttccacccgcagtgcgtcacgaagccgcccaccgccgcgtgcgccagcac 3369895
Score = 48.1 bits (24), Expect = 0.006
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 622 cacggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtg 681
||||||||||| || |||||||| |||||||| || | ||| ||||| |||||||||||
Sbjct: 120997 cacggcctccagcgtcgagttccacccgcagtgcgtcacgaacccgccgacggccgggtg 120938
Score = 46.1 bits (23), Expect = 0.025
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 608 ggcacgccctccgacacggcctccacggtggagttccagccgcagtgggtgaagaagccg 667
||||||||| ||| || |||||| ||| |||||||| |||||||| || | |||||
Sbjct: 2825705 ggcacgcccgccgccagcgcctccgtggtcgagttccacccgcagtgcgtcacgaagcaa 2825646
Query: 668 cccacggccgggtgcgcgagcac 690
|| ||||| ||||||||||||||
Sbjct: 2825645 ccgacggcggggtgcgcgagcac 2825623
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0519D04
Length = 193068
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 633 cggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
||||||||||||| |||||||| || | ||||| ||||||||| | ||||||||||||
Sbjct: 17203 cggtggagttccacccgcagtgcgtcacgaagcagcccacggcggcgtgcgcgagcac 17146
Score = 46.1 bits (23), Expect = 0.025
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 608 ggcacgccctccgacacggcctccacggtggagttccagccgcagtgggtgaagaagccg 667
||||||||| ||| || |||||| ||| |||||||| |||||||| || | |||||
Sbjct: 12752 ggcacgcccgccgccagcgcctccgtggtcgagttccacccgcagtgcgtcacgaagcaa 12693
Query: 668 cccacggccgggtgcgcgagcac 690
|| ||||| ||||||||||||||
Sbjct: 12692 ccgacggcggggtgcgcgagcac 12670
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0478H03
Length = 167560
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 633 cggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
||||||||||||| |||||||| || | ||||| ||||||||| | ||||||||||||
Sbjct: 136610 cggtggagttccacccgcagtgcgtcacgaagcagcccacggcggcgtgcgcgagcac 136553
Score = 46.1 bits (23), Expect = 0.025
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 608 ggcacgccctccgacacggcctccacggtggagttccagccgcagtgggtgaagaagccg 667
||||||||| ||| || |||||| ||| |||||||| |||||||| || | |||||
Sbjct: 132159 ggcacgcccgccgccagcgcctccgtggtcgagttccacccgcagtgcgtcacgaagcaa 132100
Query: 668 cccacggccgggtgcgcgagcac 690
|| ||||| ||||||||||||||
Sbjct: 132099 ccgacggcggggtgcgcgagcac 132077
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 633 cggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
||||||||||||| |||||||| || | ||||| ||||||||| | ||||||||||||
Sbjct: 2763226 cggtggagttccacccgcagtgcgtcacgaagcagcccacggcggcgtgcgcgagcac 2763169
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 638 gagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
|||||||| |||||||| || | |||||||||||| |||| |||||| |||||
Sbjct: 3301684 gagttccacccgcagtgcgtcacgaagccgcccaccgccgcgtgcgccagcac 3301736
Score = 48.1 bits (24), Expect = 0.006
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 622 cacggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtg 681
||||||||||| || |||||||| |||||||| || | ||| ||||| |||||||||||
Sbjct: 140674 cacggcctccagcgtcgagttccacccgcagtgcgtcacgaacccgccgacggccgggtg 140615
Score = 46.1 bits (23), Expect = 0.025
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 608 ggcacgccctccgacacggcctccacggtggagttccagccgcagtgggtgaagaagccg 667
||||||||| ||| || |||||| ||| |||||||| |||||||| || | |||||
Sbjct: 2758770 ggcacgcccgccgccagcgcctccgtggtcgagttccacccgcagtgcgtcacgaagcaa 2758711
Query: 668 cccacggccgggtgcgcgagcac 690
|| ||||| ||||||||||||||
Sbjct: 2758710 ccgacggcggggtgcgcgagcac 2758688
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 633 cggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
||||||||||||| |||||||| || | ||||| ||||||||| | ||||||||||||
Sbjct: 27964947 cggtggagttccacccgcagtgcgtcacgaagcagcccacggcggcgtgcgcgagcac 27964890
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 638 gagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
|||||||| |||||||| || | |||||||||||| |||| |||||| |||||
Sbjct: 28503405 gagttccacccgcagtgcgtcacgaagccgcccaccgccgcgtgcgccagcac 28503457
Score = 48.1 bits (24), Expect = 0.006
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 622 cacggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtg 681
||||||||||| || |||||||| |||||||| || | ||| ||||| |||||||||||
Sbjct: 25342395 cacggcctccagcgtcgagttccacccgcagtgcgtcacgaacccgccgacggccgggtg 25342336
Score = 46.1 bits (23), Expect = 0.025
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 608 ggcacgccctccgacacggcctccacggtggagttccagccgcagtgggtgaagaagccg 667
||||||||| ||| || |||||| ||| |||||||| |||||||| || | |||||
Sbjct: 27960491 ggcacgcccgccgccagcgcctccgtggtcgagttccacccgcagtgcgtcacgaagcaa 27960432
Query: 668 cccacggccgggtgcgcgagcac 690
|| ||||| ||||||||||||||
Sbjct: 27960431 ccgacggcggggtgcgcgagcac 27960409
Score = 46.1 bits (23), Expect = 0.025
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 638 gagttccagccgcagtgggtgaagaagccgcccac 672
|||||||| ||||||||| ||| ||||||||||||
Sbjct: 4239131 gagttccacccgcagtggctgaggaagccgcccac 4239165
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 633 cggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
||||||||||||| |||||||| || | ||||| ||||||||| | ||||||||||||
Sbjct: 28302103 cggtggagttccacccgcagtgcgtcacgaagcagcccacggcggcgtgcgcgagcac 28302046
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 638 gagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgagcac 690
|||||||| |||||||| || | |||||||||||| |||| |||||| |||||
Sbjct: 28841790 gagttccacccgcagtgcgtcacgaagccgcccaccgccgcgtgcgccagcac 28841842
Score = 48.1 bits (24), Expect = 0.006
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 622 cacggcctccacggtggagttccagccgcagtgggtgaagaagccgcccacggccgggtg 681
||||||||||| || |||||||| |||||||| || | ||| ||||| |||||||||||
Sbjct: 25593394 cacggcctccagcgtcgagttccacccgcagtgcgtcacgaacccgccgacggccgggtg 25593335
Score = 46.1 bits (23), Expect = 0.025
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 608 ggcacgccctccgacacggcctccacggtggagttccagccgcagtgggtgaagaagccg 667
||||||||| ||| || |||||| ||| |||||||| |||||||| || | |||||
Sbjct: 28297652 ggcacgcccgccgccagcgcctccgtggtcgagttccacccgcagtgcgtcacgaagcaa 28297593
Query: 668 cccacggccgggtgcgcgagcac 690
|| ||||| ||||||||||||||
Sbjct: 28297592 ccgacggcggggtgcgcgagcac 28297570
>gb|AU055724.1|AU055724 AU055724 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S20020_1A, mRNA sequence
Length = 405
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 638 gagttccagccgcagtgggtgaagaagccgcccacggccgg 678
|||||||||||||||||||||| |||||| || ||||||||
Sbjct: 105 gagttccagccgcagtgggtgacgaagccaccgacggccgg 65
>gb|CB645026.1|CB645026 OSJNEb06H20.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06H20 3', mRNA sequence
Length = 809
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 636 tggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgag 687
|||||||||| ||||||||||| | ||| ||||||||||| | |||||||||
Sbjct: 527 tggagttccacccgcagtgggtcacgaacccgcccacggcggcgtgcgcgag 578
>dbj|AK065987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044P16, full
insert sequence
Length = 1599
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 636 tggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgag 687
|||||||||| ||||||||||| | ||| ||||||||||| | |||||||||
Sbjct: 1119 tggagttccacccgcagtgggtcacgaacccgcccacggcggcgtgcgcgag 1068
>dbj|AK105912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-G12, full
insert sequence
Length = 1645
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 636 tggagttccagccgcagtgggtgaagaagccgcccacggccgggtgcgcgag 687
|||||||||| ||||||||||| | ||| ||||||||||| | |||||||||
Sbjct: 1165 tggagttccacccgcagtgggtcacgaacccgcccacggcggcgtgcgcgag 1114
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,019,141
Number of Sequences: 438736
Number of extensions: 1019141
Number of successful extensions: 6428
Number of sequences better than 0.5: 173
Number of HSP's better than 0.5 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5466
Number of HSP's gapped (non-prelim): 962
length of query: 694
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 673
effective length of database: 2,791,206,460
effective search space: 1878481947580
effective search space used: 1878481947580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)