BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478337.2.1
(729 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK059638.1| Oryza sativa (japonica cultivar-group) cDNA... 349 1e-093
dbj|AP005289.2| Oryza sativa (japonica cultivar-group) geno... 349 1e-093
ref|XM_467145.1| Oryza sativa (japonica cultivar-group), mRNA 349 1e-093
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 349 1e-093
dbj|AP005072.3| Oryza sativa (japonica cultivar-group) geno... 349 1e-093
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 349 1e-093
gb|AACV01005076.1| Oryza sativa (japonica cultivar-group) c... 333 8e-089
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 333 8e-089
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 333 8e-089
gb|AQ259290.1|AQ259290 nbxb0022M06f CUGI Rice BAC Library O... 163 2e-037
gb|AU101525.1|AU101525 AU101525 Rice cDNA from immature lea... 123 1e-025
gb|AACV01010249.1| Oryza sativa (japonica cultivar-group) c... 103 1e-019
ref|XM_473434.1| Oryza sativa (japonica cultivar-group), p... 103 1e-019
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 103 1e-019
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromoso... 103 1e-019
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 103 1e-019
gb|AQ865692.1|AQ865692 nbeb0026A21r CUGI Rice BAC Library (... 101 5e-019
gb|AQ865772.1|AQ865772 nbeb0026A22r CUGI Rice BAC Library (... 92 5e-016
gb|AU032185.1|AU032185 AU032185 Rice root Oryza sativa (jap... 82 5e-013
gb|AU032186.1|AU032186 AU032186 Rice root Oryza sativa (jap... 80 2e-012
ref|XM_467144.1| Oryza sativa (japonica cultivar-group), mRNA 66 3e-008
gb|AU101526.1|AU101526 AU101526 Rice cDNA from immature lea... 54 1e-004
gb|AU161321.1|AU161321 AU161321 Rice callus Oryza sativa (j... 54 1e-004
gb|AU166877.1|AU166877 AU166877 Rice callus (2001) Oryza sa... 54 1e-004
dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I1... 54 1e-004
gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
ref|NM_197698.1| Oryza sativa (japonica cultivar-group) bet... 54 1e-004
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 54 1e-004
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
dbj|AK101313.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
gb|AACV01011389.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
gb|AC119290.2| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CH401195.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|C20417.1|C20417 C20417 Rice panicle at ripening stage Or... 48 0.007
gb|C27500.1|C27500 C27500 Rice callus cDNA Oryza sativa (ja... 48 0.007
gb|C96991.1|C96991 C96991 Rice callus Oryza sativa (japonic... 48 0.007
gb|C98131.1|C98131 C98131 Rice callus Oryza sativa (japonic... 48 0.007
gb|AU077523.1|AU077523 AU077523 Rice callus Oryza sativa (j... 48 0.007
gb|AU093543.1|AU093543 AU093543 Rice callus Oryza sativa (j... 48 0.007
gb|AU094597.1|AU094597 AU094597 Rice panicle at ripening st... 48 0.007
gb|AU173230.1|AU173230 AU173230 Rice root Oryza sativa (jap... 48 0.007
gb|AU184078.1|AU184078 AU184078 Rice root Oryza sativa (jap... 48 0.007
gb|AU184180.1|AU184180 AU184180 Rice root Oryza sativa (jap... 48 0.007
gb|AU225903.1|AU225903 AU225903 Oryza sativa Koshihikari pi... 48 0.007
gb|CV722636.1|CV722636 root--01-B24.g1 Rice root lambda pha... 48 0.007
dbj|AK060096.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK064012.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK101357.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK101806.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK103929.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK105981.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11... 48 0.007
gb|AACV01022092.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
ref|NM_197701.1| Oryza sativa (japonica cultivar-group) bet... 48 0.007
gb|C96739.1|C96739 C96739 Rice callus Oryza sativa (japonic... 46 0.026
gb|C19396.1|C19396 C19396 Rice panicle at ripening stage Or... 44 0.10
gb|C20012.1|C20012 C20012 Rice panicle at ripening stage Or... 44 0.10
gb|C20219.1|C20219 C20219 Rice panicle at ripening stage Or... 44 0.10
gb|D23848.1|D23848 RICR0389A Rice root Oryza sativa (japoni... 44 0.10
gb|AU093822.1|AU093822 AU093822 Rice panicle at flowering s... 44 0.10
gb|AU165472.1|AU165472 AU165472 Rice panicle at flowering s... 44 0.10
gb|CB645647.1|CB645647 OSJNEb07I02.r OSJNEb Oryza sativa (j... 44 0.10
gb|CB652074.1|CB652074 OSJNEc01I12.f OSJNEc Oryza sativa (j... 44 0.10
gb|CB652075.1|CB652075 OSJNEc01I12.r OSJNEc Oryza sativa (j... 44 0.10
gb|CB656972.1|CB656972 OSJNEc11O16.r OSJNEc Oryza sativa (j... 44 0.10
dbj|AK065743.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.10
dbj|AK119653.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.10
gb|AACV01003213.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
gb|AACV01010248.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
ref|XM_463871.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.10
ref|XM_473433.1| Oryza sativa (japonica cultivar-group), p... 44 0.10
ref|XM_506683.1| PREDICTED Oryza sativa (japonica cultivar-... 44 0.10
dbj|AP004867.2| Oryza sativa (japonica cultivar-group) geno... 44 0.10
dbj|AP004121.3| Oryza sativa (japonica cultivar-group) geno... 44 0.10
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 44 0.10
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC O... 42 0.41
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 42 0.41
gb|AACV01010945.1| Oryza sativa (japonica cultivar-group) c... 42 0.41
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.41
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
>dbj|AK059638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-B01, full
insert sequence
Length = 1378
Score = 349 bits (176), Expect = 1e-093
Identities = 250/274 (91%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||||| | ||||| ||||||| || ||||||||||
Sbjct: 982 aggagtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgt 923
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
|||| |||||||||||| |||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 922 tgtttgcgacgagcaccttgccggagtcggaggtgaggcggagcgagaatggcgccttca 863
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 862 gggccttgccggtgttggagttgtaccgccagagcgcgccccagttctgcaccatcggcg 803
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||| ||||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 802 tcca---gccgcagccggcctccatcaggtcgacggcgttgaggtcgccgtcgccgtcct 746
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||||||||||||||| ||||||||||||||
Sbjct: 745 cgaactcgatgagcacctcgaagtagaacgggtt 712
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 1196 cacatcactaggggaatgcagagaccgtggaggga 1162
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 1137 tcctcctcttctgacaccgcctctcgc 1111
>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_F09
Length = 139371
Score = 349 bits (176), Expect = 1e-093
Identities = 250/274 (91%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||||| | ||||| ||||||| || ||||||||||
Sbjct: 102840 aggagtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgt 102781
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
|||| |||||||||||| |||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 102780 tgtttgcgacgagcaccttgccggagtcggaggtgaggcggagcgagaatggcgccttca 102721
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 102720 gggccttgccggtgttggagttgtaccgccagagcgcgccccagttctgcaccatcggcg 102661
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||| ||||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 102660 tcca---gccgcagccggcctccatcaggtcgacggcgttgaggtcgccgtcgccgtcct 102604
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||||||||||||||| ||||||||||||||
Sbjct: 102603 cgaactcgatgagcacctcgaagtagaacgggtt 102570
Score = 65.9 bits (33), Expect = 3e-008
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 457 agttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgttgttgg 516
||||||| | ||| ||||||||| | ||||| | ||| |||||||||||||||||| |||
Sbjct: 92625 agttcacgatggaccggtacgtgccgccgggctgccacccggcggggatgacgttgctgg 92566
Query: 517 cgacgagcaccctgccggagtcgga 541
|||||||| || ||||||| ||||
Sbjct: 92565 cgacgagcgtccggccggagccgga 92541
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 103054 cacatcactaggggaatgcagagaccgtggaggga 103020
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 102995 tcctcctcttctgacaccgcctctcgc 102969
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcg 692
|||||||||||||||||||||
Sbjct: 92401 aggtcgccgtcgccgtcctcg 92381
>ref|XM_467145.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1378
Score = 349 bits (176), Expect = 1e-093
Identities = 250/274 (91%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||||| | ||||| ||||||| || ||||||||||
Sbjct: 982 aggagtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgt 923
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
|||| |||||||||||| |||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 922 tgtttgcgacgagcaccttgccggagtcggaggtgaggcggagcgagaatggcgccttca 863
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 862 gggccttgccggtgttggagttgtaccgccagagcgcgccccagttctgcaccatcggcg 803
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||| ||||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 802 tcca---gccgcagccggcctccatcaggtcgacggcgttgaggtcgccgtcgccgtcct 746
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||||||||||||||| ||||||||||||||
Sbjct: 745 cgaactcgatgagcacctcgaagtagaacgggtt 712
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 1196 cacatcactaggggaatgcagagaccgtggaggga 1162
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 1137 tcctcctcttctgacaccgcctctcgc 1111
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 349 bits (176), Expect = 1e-093
Identities = 250/274 (91%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||||| | ||||| ||||||| || ||||||||||
Sbjct: 1833678 aggagtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgt 1833619
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
|||| |||||||||||| |||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 1833618 tgtttgcgacgagcaccttgccggagtcggaggtgaggcggagcgagaatggcgccttca 1833559
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 1833558 gggccttgccggtgttggagttgtaccgccagagcgcgccccagttctgcaccatcggcg 1833499
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||| ||||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 1833498 tcca---gccgcagccggcctccatcaggtcgacggcgttgaggtcgccgtcgccgtcct 1833442
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||||||||||||||| ||||||||||||||
Sbjct: 1833441 cgaactcgatgagcacctcgaagtagaacgggtt 1833408
Score = 65.9 bits (33), Expect = 3e-008
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 457 agttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgttgttgg 516
||||||| | ||| ||||||||| | ||||| | ||| |||||||||||||||||| |||
Sbjct: 1823463 agttcacgatggaccggtacgtgccgccgggctgccacccggcggggatgacgttgctgg 1823404
Query: 517 cgacgagcaccctgccggagtcgga 541
|||||||| || ||||||| ||||
Sbjct: 1823403 cgacgagcgtccggccggagccgga 1823379
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 1833892 cacatcactaggggaatgcagagaccgtggaggga 1833858
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 1833833 tcctcctcttctgacaccgcctctcgc 1833807
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcg 692
|||||||||||||||||||||
Sbjct: 1823239 aggtcgccgtcgccgtcctcg 1823219
>dbj|AP005072.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0708H12
Length = 162381
Score = 349 bits (176), Expect = 1e-093
Identities = 250/274 (91%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||||| | ||||| ||||||| || ||||||||||
Sbjct: 30709 aggagtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgt 30650
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
|||| |||||||||||| |||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 30649 tgtttgcgacgagcaccttgccggagtcggaggtgaggcggagcgagaatggcgccttca 30590
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 30589 gggccttgccggtgttggagttgtaccgccagagcgcgccccagttctgcaccatcggcg 30530
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||| ||||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 30529 tcca---gccgcagccggcctccatcaggtcgacggcgttgaggtcgccgtcgccgtcct 30473
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||||||||||||||| ||||||||||||||
Sbjct: 30472 cgaactcgatgagcacctcgaagtagaacgggtt 30439
Score = 65.9 bits (33), Expect = 3e-008
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 457 agttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgttgttgg 516
||||||| | ||| ||||||||| | ||||| | ||| |||||||||||||||||| |||
Sbjct: 20494 agttcacgatggaccggtacgtgccgccgggctgccacccggcggggatgacgttgctgg 20435
Query: 517 cgacgagcaccctgccggagtcgga 541
|||||||| || ||||||| ||||
Sbjct: 20434 cgacgagcgtccggccggagccgga 20410
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 30923 cacatcactaggggaatgcagagaccgtggaggga 30889
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 30864 tcctcctcttctgacaccgcctctcgc 30838
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcg 692
|||||||||||||||||||||
Sbjct: 20270 aggtcgccgtcgccgtcctcg 20250
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 349 bits (176), Expect = 1e-093
Identities = 250/274 (91%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||||| | ||||| ||||||| || ||||||||||
Sbjct: 26668679 aggagtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgt 26668620
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
|||| |||||||||||| |||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 26668619 tgtttgcgacgagcaccttgccggagtcggaggtgaggcggagcgagaatggcgccttca 26668560
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 26668559 gggccttgccggtgttggagttgtaccgccagagcgcgccccagttctgcaccatcggcg 26668500
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||| ||||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 26668499 tcca---gccgcagccggcctccatcaggtcgacggcgttgaggtcgccgtcgccgtcct 26668443
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||||||||||||||| ||||||||||||||
Sbjct: 26668442 cgaactcgatgagcacctcgaagtagaacgggtt 26668409
Score = 65.9 bits (33), Expect = 3e-008
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 457 agttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgttgttgg 516
||||||| | ||| ||||||||| | ||||| | ||| |||||||||||||||||| |||
Sbjct: 26658464 agttcacgatggaccggtacgtgccgccgggctgccacccggcggggatgacgttgctgg 26658405
Query: 517 cgacgagcaccctgccggagtcgga 541
|||||||| || ||||||| ||||
Sbjct: 26658404 cgacgagcgtccggccggagccgga 26658380
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 26668893 cacatcactaggggaatgcagagaccgtggaggga 26668859
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 26668834 tcctcctcttctgacaccgcctctcgc 26668808
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctcc 264
||||||| ||||||||||||||||||
Sbjct: 839356 gctccttcaccttcttgtcctcctcc 839381
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcg 692
|||||||||||||||||||||
Sbjct: 26658240 aggtcgccgtcgccgtcctcg 26658220
>gb|AACV01005076.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005076, whole
genome shotgun sequence
Length = 21571
Score = 333 bits (168), Expect = 8e-089
Identities = 248/274 (90%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||||| | ||||| ||||||| || ||||||||||
Sbjct: 12539 aggagtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgt 12480
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
|||| |||||||||||| |||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 12479 tgtttgcgacgagcaccttgccggagtcggaggtgaggcggagcgagaatggcgccttca 12420
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 12419 gggccttgccggtgttggagttgtaccgccagagcgcgccccagttctgcaccatcggcg 12360
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||| ||||||||||| |||| |||||| | |||||||||||||||||||
Sbjct: 12359 tcca---gccgcagccggcctccatcaggtcaacggcgttaaggtcgccgtcgccgtcct 12303
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||||||||||||||| ||||||||||||||
Sbjct: 12302 cgaactcgatgagcacctcgaagtagaacgggtt 12269
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 12753 cacatcactaggggaatgcagagaccgtggaggga 12719
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 495 ccggcggggatgacgttgttggcgacgagcaccctgccggagtcgga 541
|||||||||||||||||| ||||||||||| || ||||||| ||||
Sbjct: 2285 ccggcggggatgacgttgctggcgacgagcgtccggccggagccgga 2239
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 12694 tcctcctcttctgacaccgcctctcgc 12668
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcg 692
|||||||||||||||||||||
Sbjct: 2099 aggtcgccgtcgccgtcctcg 2079
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 333 bits (168), Expect = 8e-089
Identities = 248/274 (90%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||||| | ||||| ||||||| || ||||||||||
Sbjct: 13122899 aggagtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgt 13122840
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
|||| |||||||||||| |||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 13122839 tgtttgcgacgagcaccttgccggagtcggaggtgaggcggagcgagaatggcgccttca 13122780
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 13122779 gggccttgccggtgttggagttgtaccgccagagcgcgccccagttctgcaccatcggcg 13122720
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||| ||||||||||| |||| |||||| | |||||||||||||||||||
Sbjct: 13122719 tcca---gccgcagccggcctccatcaggtcaacggcgttaaggtcgccgtcgccgtcct 13122663
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||||||||||||||| ||||||||||||||
Sbjct: 13122662 cgaactcgatgagcacctcgaagtagaacgggtt 13122629
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 13123113 cacatcactaggggaatgcagagaccgtggaggga 13123079
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 495 ccggcggggatgacgttgttggcgacgagcaccctgccggagtcgga 541
|||||||||||||||||| ||||||||||| || ||||||| ||||
Sbjct: 13112645 ccggcggggatgacgttgctggcgacgagcgtccggccggagccgga 13112599
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 13123054 tcctcctcttctgacaccgcctctcgc 13123028
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcg 692
|||||||||||||||||||||
Sbjct: 13112459 aggtcgccgtcgccgtcctcg 13112439
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 333 bits (168), Expect = 8e-089
Identities = 248/274 (90%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||||| | ||||| ||||||| || ||||||||||
Sbjct: 26575963 aggagtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgt 26575904
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
|||| |||||||||||| |||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 26575903 tgtttgcgacgagcaccttgccggagtcggaggtgaggcggagcgagaatggcgccttca 26575844
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 26575843 gggccttgccggtgttggagttgtaccgccagagcgcgccccagttctgcaccatcggcg 26575784
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||| ||||||||||| |||| |||||| | |||||||||||||||||||
Sbjct: 26575783 tcca---gccgcagccggcctccatcaggtcaacggcgttaaggtcgccgtcgccgtcct 26575727
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||||||||||||||| ||||||||||||||
Sbjct: 26575726 cgaactcgatgagcacctcgaagtagaacgggtt 26575693
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 26576177 cacatcactaggggaatgcagagaccgtggaggga 26576143
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 495 ccggcggggatgacgttgttggcgacgagcaccctgccggagtcgga 541
|||||||||||||||||| ||||||||||| || ||||||| ||||
Sbjct: 26565709 ccggcggggatgacgttgctggcgacgagcgtccggccggagccgga 26565663
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 26576118 tcctcctcttctgacaccgcctctcgc 26576092
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctcc 264
||||||| ||||||||||||||||||
Sbjct: 855573 gctccttcaccttcttgtcctcctcc 855598
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcg 692
|||||||||||||||||||||
Sbjct: 26565523 aggtcgccgtcgccgtcctcg 26565503
>gb|AQ259290.1|AQ259290 nbxb0022M06f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0022M06f, DNA sequence
Length = 595
Score = 163 bits (82), Expect = 2e-037
Identities = 127/142 (89%)
Strand = Plus / Plus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||||| | ||||| ||||||| || ||||||||||
Sbjct: 294 aggagtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgt 353
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
|||| |||||||||||| |||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 354 tgtttgcgacgagcaccttgccggagtcggaggtgaggcggagcgagaatggcgccttca 413
Query: 571 gcgccttgccggtgttggagtt 592
| |||||||||| |||||||||
Sbjct: 414 gggccttgccggagttggagtt 435
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 80 cacatcactaggggaatgcagagaccgtggaggga 114
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 139 tcctcctcttctgacaccgcctctcgc 165
>gb|AU101525.1|AU101525 AU101525 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60942, mRNA sequence
Length = 462
Score = 123 bits (62), Expect = 1e-025
Identities = 101/114 (88%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||||| | ||||| ||||||| || ||||||||||
Sbjct: 114 aggagtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgt 55
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcg 564
|||| |||||||||||| |||||||||||||||| || ||||||||||| ||||
Sbjct: 54 tgtttgcgacgagcaccttgccggagtcggaggtgaggcggagcgagaatggcg 1
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 328 cacatcactaggggaatgcagagaccgtggaggga 294
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 269 tcctcctcttctgacaccgcctctcgc 243
>gb|AACV01010249.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010249, whole
genome shotgun sequence
Length = 24047
Score = 103 bits (52), Expect = 1e-019
Identities = 94/108 (87%)
Strand = Plus / Minus
Query: 495 ccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
|||| |||||||||||||||||||||||||||| |||||||| | ||||| ||||||| |
Sbjct: 20691 ccggaggggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccggatc 20632
Query: 555 gagaagggcgccttcagcgccttgccggtgttggagttgtagcgccag 602
||||| |||| |||||| ||| ||||||||||||||| |||||||
Sbjct: 20631 gagaacggcgggctcagcggcttcccggtgttggagttgaggcgccag 20584
>ref|XM_473434.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 828
Score = 103 bits (52), Expect = 1e-019
Identities = 94/108 (87%)
Strand = Plus / Minus
Query: 495 ccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
|||| |||||||||||||||||||||||||||| |||||||| | ||||| ||||||| |
Sbjct: 779 ccggaggggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccggatc 720
Query: 555 gagaagggcgccttcagcgccttgccggtgttggagttgtagcgccag 602
||||| |||| |||||| ||| ||||||||||||||| |||||||
Sbjct: 719 gagaacggcgggctcagcggcttcccggtgttggagttgaggcgccag 672
Score = 42.1 bits (21), Expect = 0.41
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 647 ggcctccatgaggtggacggcgctgaggtcgccgtcgccgt 687
||||||||||| ||| || ||| |||||||||||||||||
Sbjct: 624 ggcctccatgatgtgcaccgcggcgaggtcgccgtcgccgt 584
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 103 bits (52), Expect = 1e-019
Identities = 94/108 (87%)
Strand = Plus / Minus
Query: 495 ccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
|||| |||||||||||||||||||||||||||| |||||||| | ||||| ||||||| |
Sbjct: 1406690 ccggaggggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccggatc 1406631
Query: 555 gagaagggcgccttcagcgccttgccggtgttggagttgtagcgccag 602
||||| |||| |||||| ||| ||||||||||||||| |||||||
Sbjct: 1406630 gagaacggcgggctcagcggcttcccggtgttggagttgaggcgccag 1406583
Score = 44.1 bits (22), Expect = 0.10
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagc 524
||||| ||||| |||| |||||||||||| |||||||||||
Sbjct: 1397084 ccgggcttccacccggaagggatgacgttgctggcgacgagc 1397043
Score = 42.1 bits (21), Expect = 0.41
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 647 ggcctccatgaggtggacggcgctgaggtcgccgtcgccgt 687
||||||||||| ||| || ||| |||||||||||||||||
Sbjct: 1406535 ggcctccatgatgtgcaccgcggcgaggtcgccgtcgccgt 1406495
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 103 bits (52), Expect = 1e-019
Identities = 94/108 (87%)
Strand = Plus / Minus
Query: 495 ccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
|||| |||||||||||||||||||||||||||| |||||||| | ||||| ||||||| |
Sbjct: 5456447 ccggaggggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccggatc 5456388
Query: 555 gagaagggcgccttcagcgccttgccggtgttggagttgtagcgccag 602
||||| |||| |||||| ||| ||||||||||||||| |||||||
Sbjct: 5456387 gagaacggcgggctcagcggcttcccggtgttggagttgaggcgccag 5456340
Score = 44.1 bits (22), Expect = 0.10
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagc 524
||||| ||||| |||| |||||||||||| |||||||||||
Sbjct: 5434649 ccgggcttccacccggaagggatgacgttgctggcgacgagc 5434608
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 103 bits (52), Expect = 1e-019
Identities = 94/108 (87%)
Strand = Plus / Minus
Query: 495 ccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
|||| |||||||||||||||||||||||||||| |||||||| | ||||| ||||||| |
Sbjct: 24600546 ccggaggggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccggatc 24600487
Query: 555 gagaagggcgccttcagcgccttgccggtgttggagttgtagcgccag 602
||||| |||| |||||| ||| ||||||||||||||| |||||||
Sbjct: 24600486 gagaacggcgggctcagcggcttcccggtgttggagttgaggcgccag 24600439
Score = 44.1 bits (22), Expect = 0.10
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagc 524
||||| ||||| |||| |||||||||||| |||||||||||
Sbjct: 24578748 ccgggcttccacccggaagggatgacgttgctggcgacgagc 24578707
>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
complete sequence
Length = 173522
Score = 103 bits (52), Expect = 1e-019
Identities = 94/108 (87%)
Strand = Plus / Minus
Query: 495 ccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
|||| |||||||||||||||||||||||||||| |||||||| | ||||| ||||||| |
Sbjct: 60669 ccggaggggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccggatc 60610
Query: 555 gagaagggcgccttcagcgccttgccggtgttggagttgtagcgccag 602
||||| |||| |||||| ||| ||||||||||||||| |||||||
Sbjct: 60609 gagaacggcgggctcagcggcttcccggtgttggagttgaggcgccag 60562
Score = 44.1 bits (22), Expect = 0.10
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagc 524
||||| ||||| |||| |||||||||||| |||||||||||
Sbjct: 51063 ccgggcttccacccggaagggatgacgttgctggcgacgagc 51022
Score = 42.1 bits (21), Expect = 0.41
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 647 ggcctccatgaggtggacggcgctgaggtcgccgtcgccgt 687
||||||||||| ||| || ||| |||||||||||||||||
Sbjct: 60514 ggcctccatgatgtgcaccgcggcgaggtcgccgtcgccgt 60474
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 103 bits (52), Expect = 1e-019
Identities = 94/108 (87%)
Strand = Plus / Minus
Query: 495 ccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
|||| |||||||||||||||||||||||||||| |||||||| | ||||| ||||||| |
Sbjct: 27630040 ccggaggggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccggatc 27629981
Query: 555 gagaagggcgccttcagcgccttgccggtgttggagttgtagcgccag 602
||||| |||| |||||| ||| ||||||||||||||| |||||||
Sbjct: 27629980 gagaacggcgggctcagcggcttcccggtgttggagttgaggcgccag 27629933
Score = 44.1 bits (22), Expect = 0.10
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagc 524
||||| ||||| |||| |||||||||||| |||||||||||
Sbjct: 27620434 ccgggcttccacccggaagggatgacgttgctggcgacgagc 27620393
Score = 42.1 bits (21), Expect = 0.41
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 647 ggcctccatgaggtggacggcgctgaggtcgccgtcgccgt 687
||||||||||| ||| || ||| |||||||||||||||||
Sbjct: 27629885 ggcctccatgatgtgcaccgcggcgaggtcgccgtcgccgt 27629845
>gb|AQ865692.1|AQ865692 nbeb0026A21r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0026A21r, DNA sequence
Length = 468
Score = 101 bits (51), Expect = 5e-019
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 495 ccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
|||| |||||||||||||||||||||||||||| |||||||| | ||||| ||||||| |
Sbjct: 362 ccggaggggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccggatc 421
Query: 555 gagaagggcgccttcagcgccttgccggtgttggagttg 593
||||| |||| |||||| ||| |||||||||||||||
Sbjct: 422 gagaacggcgggctcagcggcttcccggtgttggagttg 460
>gb|AQ865772.1|AQ865772 nbeb0026A22r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0026A22r, DNA sequence
Length = 450
Score = 91.7 bits (46), Expect = 5e-016
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 495 ccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
|||| |||||||||||||||||||||||||||| |||||||| | ||||| ||||||| |
Sbjct: 357 ccggaggggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccggatc 416
Query: 555 gagaagggcgccttcagcgccttgccggtgttgg 588
||||| |||| |||||| ||| ||||||||||
Sbjct: 417 gagaacggcgggctcagcggcttcccggtgttgg 450
>gb|AU032185.1|AU032185 AU032185 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3667_1A, mRNA sequence
Length = 459
Score = 81.8 bits (41), Expect = 5e-013
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||||| | ||||| ||||||| || ||||||||||
Sbjct: 77 aggagtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgt 18
Query: 511 tgttggcgacgagcacc 527
|||| ||||||||||||
Sbjct: 17 tgtttgcgacgagcacc 1
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 291 cacatcactaggggaatgcagagaccgtggaggga 257
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 232 tcctcctcttctgacaccgcctctcgc 206
>gb|AU032186.1|AU032186 AU032186 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3667_8Z, mRNA sequence
Length = 509
Score = 79.8 bits (40), Expect = 2e-012
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||||| | ||||| ||||||| || ||||||||||
Sbjct: 76 aggagtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgt 17
Query: 511 tgttggcgacgagcac 526
|||| |||||||||||
Sbjct: 16 tgtttgcgacgagcac 1
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 290 cacatcactaggggaatgcagagaccgtggaggga 256
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 231 tcctcctcttctgacaccgcctctcgc 205
>ref|XM_467144.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 822
Score = 65.9 bits (33), Expect = 3e-008
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 457 agttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgttgttgg 516
||||||| | ||| ||||||||| | ||||| | ||| |||||||||||||||||| |||
Sbjct: 805 agttcacgatggaccggtacgtgccgccgggctgccacccggcggggatgacgttgctgg 746
Query: 517 cgacgagcaccctgccggagtcgga 541
|||||||| || ||||||| ||||
Sbjct: 745 cgacgagcgtccggccggagccgga 721
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcg 692
|||||||||||||||||||||
Sbjct: 581 aggtcgccgtcgccgtcctcg 561
>gb|AU101526.1|AU101526 AU101526 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60942, mRNA sequence
Length = 454
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 190 cacatcactaggtgactgcagagaccgtggaggga 224
|||||||||||| || |||||||||||||||||||
Sbjct: 239 cacatcactaggggaatgcagagaccgtggaggga 205
Score = 46.1 bits (23), Expect = 0.026
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 tcctcctcttcttacaccgcctctcgc 285
|||||||||||| ||||||||||||||
Sbjct: 180 tcctcctcttctgacaccgcctctcgc 154
>gb|AU161321.1|AU161321 AU161321 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61589, mRNA sequence
Length = 710
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 325 gggatgacgttgttggcgacgagcgtcttgccggagtcg 287
>gb|AU166877.1|AU166877 AU166877 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C51730, mRNA sequence
Length = 457
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 72 gggatgacgttgttggcgacgagcgtcttgccggagtcg 34
>dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D06, full
insert sequence
Length = 1259
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 885 gggatgacgttgttggcgacgagcgtcttgccggagtcg 847
>dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061F13, full
insert sequence
Length = 1263
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 891 gggatgacgttgttggcgacgagcgtcttgccggagtcg 853
>dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A02, full
insert sequence
Length = 1257
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 885 gggatgacgttgttggcgacgagcgtcttgccggagtcg 847
>dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A09, full
insert sequence
Length = 1257
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 885 gggatgacgttgttggcgacgagcgtcttgccggagtcg 847
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete
sequence
Length = 135510
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 23006 gggatgacgttgttggcgacgagcgtcttgccggagtcg 22968
>gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022091, whole
genome shotgun sequence
Length = 36005
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 22300 gggatgacgttgttggcgacgagcgtcttgccggagtcg 22262
>ref|NM_197698.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB6
(OSJNBb0014I11.3), mRNA
Length = 1240
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 872 gggatgacgttgttggcgacgagcgtcttgccggagtcg 834
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 3233547 gggatgacgttgttggcgacgagcgtcttgccggagtcg 3233585
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagc 524
||||||||||||||||||||||||
Sbjct: 3263899 gggatgacgttgttggcgacgagc 3263876
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 9286706 gggatgacgttgttggcgacgagcgtcttgccggagtcg 9286744
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagc 524
||||||||||||||||||||||||
Sbjct: 9316774 gggatgacgttgttggcgacgagc 9316751
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 20152500 gggatgacgttgttggcgacgagcgtcttgccggagtcg 20152538
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagc 524
||||||||||||||||||||||||
Sbjct: 20182568 gggatgacgttgttggcgacgagc 20182545
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 21311353 gggatgacgttgttggcgacgagcgtcttgccggagtcg 21311391
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagc 524
||||||||||||||||||||||||
Sbjct: 21341705 gggatgacgttgttggcgacgagc 21341682
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
|||||||||||||||||||||||| | |||||||||||
Sbjct: 21322617 gggatgacgttgttggcgacgagcgtcttgccggagtcg 21322655
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagc 524
||||||||||||||||||||||||
Sbjct: 21352968 gggatgacgttgttggcgacgagc 21352945
>dbj|AK101313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034A12, full
insert sequence
Length = 1250
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagc 524
||||| |||||||||| |||||||||||| |||||||||||
Sbjct: 863 ccgggcttccagccggaagggatgacgttgctggcgacgagc 822
>gb|AACV01011389.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011389, whole
genome shotgun sequence
Length = 22266
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagc 524
||||| |||||||||| |||||||||||| |||||||||||
Sbjct: 3687 ccgggcttccagccggaagggatgacgttgctggcgacgagc 3728
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06,
complete sequence
Length = 144457
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagc 524
||||| |||||||||| |||||||||||| |||||||||||
Sbjct: 102827 ccgggcttccagccggaagggatgacgttgctggcgacgagc 102868
>gb|CH401195.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000032 genomic
scaffold, whole genome shotgun sequence
Length = 1766531
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagc 524
||||| |||||||||| |||||||||||| |||||||||||
Sbjct: 1012662 ccgggcttccagccggaagggatgacgttgctggcgacgagc 1012703
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagc 524
||||| |||||||||| |||||||||||| |||||||||||
Sbjct: 9813939 ccgggcttccagccggaagggatgacgttgctggcgacgagc 9813980
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 166 aagaaaccgacaccgaccactacac 190
||||||||||| |||||||||||||
Sbjct: 3728537 aagaaaccgaccccgaccactacac 3728513
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagc 524
||||| |||||||||| |||||||||||| |||||||||||
Sbjct: 8770385 ccgggcttccagccggaagggatgacgttgctggcgacgagc 8770426
>gb|C20417.1|C20417 C20417 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11993_1A, mRNA sequence
Length = 449
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagc 524
||||||||||||||||||||||||
Sbjct: 183 gggatgacgttgttggcgacgagc 160
>gb|C27500.1|C27500 C27500 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52059_1A, mRNA sequence
Length = 354
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagc 524
||||||||||||||||||||||||
Sbjct: 291 gggatgacgttgttggcgacgagc 268
>gb|C96991.1|C96991 C96991 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50438_8Z, mRNA sequence
Length = 633
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagc 524
||||||||||||||||||||||||
Sbjct: 252 gggatgacgttgttggcgacgagc 229
>gb|C98131.1|C98131 C98131 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0755_10Z, mRNA sequence
Length = 748
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagc 524
||||||||||||||||||||||||
Sbjct: 367 gggatgacgttgttggcgacgagc 344
>gb|AU077523.1|AU077523 AU077523 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52443_12Z, mRNA sequence
Length = 413
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagc 524
||||||||||||||||||||||||
Sbjct: 175 gggatgacgttgttggcgacgagc 152
>gb|AU093543.1|AU093543 AU093543 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C51295, mRNA sequence
Length = 634
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagc 524
||||||||||||||||||||||||
Sbjct: 257 gggatgacgttgttggcgacgagc 234
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,628,703
Number of Sequences: 438736
Number of extensions: 1628703
Number of successful extensions: 22583
Number of sequences better than 0.5: 94
Number of HSP's better than 0.5 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21462
Number of HSP's gapped (non-prelim): 1112
length of query: 729
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 708
effective length of database: 2,791,206,460
effective search space: 1976174173680
effective search space used: 1976174173680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)