BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455940.2.1
(1115 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK065744.1| Oryza sativa (japonica cultivar-group) cDNA... 906 0.0
gb|CB653598.1|CB653598 OSJNEc04M15.f OSJNEc Oryza sativa (j... 731 0.0
gb|CB653599.1|CB653599 OSJNEc04M15.r OSJNEc Oryza sativa (j... 545 e-152
gb|AU182287.1|AU182287 AU182287 Rice panicle at flowering s... 523 e-146
gb|AU069930.1|AU069930 AU069930 Rice panicle (longer than 1... 505 e-140
gb|AY644636.1| Oryza sativa (japonica cultivar-group) caffe... 505 e-140
gb|AACV01013091.1| Oryza sativa (japonica cultivar-group) c... 505 e-140
dbj|AB023482.2| Oryza sativa (japonica cultivar-group) geno... 505 e-140
dbj|AP002536.2| Oryza sativa (japonica cultivar-group) geno... 505 e-140
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 505 e-140
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 505 e-140
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 505 e-140
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 505 e-140
gb|CV728538.1|CV728538 COLD--01-N06.b1 Cold treated rice le... 468 e-129
gb|CF293401.1|CF293401 30DGS--02-J06.b1 Rice leaf plasmid c... 460 e-127
gb|CV721193.1|CV721193 YBH--03-D16.b1 Rice before heading y... 454 e-125
gb|CF293402.1|CF293402 30DGS--02-J06.g1 Rice leaf plasmid c... 436 e-119
gb|CA756287.1|CA756287 BR030039000_PLATE_D05_36_044.ab1 OA ... 402 e-109
gb|AU198028.1|AU198028 AU198028 Rice green shoot Oryza sati... 400 e-109
gb|AU182288.1|AU182288 AU182288 Rice panicle at flowering s... 351 5e-094
gb|AU058070.1|AU058070 AU058070 Rice panicle (longer than 1... 297 7e-078
gb|AU058067.2|AU058067 AU058067 Rice panicle (longer than 1... 186 2e-044
dbj|AK061757.1| Oryza sativa (japonica cultivar-group) cDNA... 170 1e-039
dbj|AK065515.1| Oryza sativa (japonica cultivar-group) cDNA... 170 1e-039
ref|XM_483169.1| Oryza sativa (japonica cultivar-group), mRNA 170 1e-039
ref|XM_483170.1| Oryza sativa (japonica cultivar-group), mRNA 170 1e-039
ref|XM_507282.1| PREDICTED Oryza sativa (japonica cultivar-... 170 1e-039
gb|AU101378.1|AU101378 AU101378 Rice panicle (longer than 1... 159 4e-036
dbj|AK108479.1| Oryza sativa (japonica cultivar-group) cDNA... 131 9e-028
dbj|AP000364.1| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
gb|AACV01018795.1| Oryza sativa (japonica cultivar-group) c... 127 1e-026
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 127 1e-026
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
gb|AU070794.1|AU070794 AU070794 Rice cDNA from young root O... 111 8e-022
gb|AACV01020268.1| Oryza sativa (japonica cultivar-group) c... 111 8e-022
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 111 8e-022
dbj|AP005392.3| Oryza sativa (japonica cultivar-group) geno... 111 8e-022
dbj|AP005633.3| Oryza sativa (japonica cultivar-group) geno... 111 8e-022
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 111 8e-022
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 111 8e-022
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 111 8e-022
gb|CO435814.1|CO435814 OsMR880 5MT resistant rice mutant cD... 107 1e-020
dbj|AK106735.1| Oryza sativa (japonica cultivar-group) cDNA... 90 3e-015
gb|AY644638.1| Oryza sativa (japonica cultivar-group) caffe... 90 3e-015
gb|AU101479.1|AU101479 AU101479 Rice immature leaf includin... 82 7e-013
gb|AU164542.1|AU164542 AU164542 Rice root Oryza sativa (jap... 82 7e-013
gb|CA755835.1|CA755835 BR030029000_PLATE_D01_4_012.ab1 OA O... 82 7e-013
gb|CB650397.1|CB650397 OSJNEb14N03.f OSJNEb Oryza sativa (j... 82 7e-013
gb|CB650869.1|CB650869 OSJNEb15J05.f OSJNEb Oryza sativa (j... 82 7e-013
gb|CB651300.1|CB651300 OSJNEb16D09.f OSJNEb Oryza sativa (j... 82 7e-013
gb|CB651301.1|CB651301 OSJNEb16D09.r OSJNEb Oryza sativa (j... 82 7e-013
gb|CB680447.1|CB680447 OSJNEf05C19.r OSJNEf Oryza sativa (j... 82 7e-013
gb|CF589246.1|CF589246 EST00H03 Subtracted cDNA library of ... 82 7e-013
gb|CV721863.1|CV721863 YBH--05-J11.b1 Rice before heading y... 82 7e-013
gb|BP184560.1|BP184560 BP184560 pNS rice panicle cDNA, flow... 82 7e-013
dbj|AK071482.1| Oryza sativa (japonica cultivar-group) cDNA... 82 7e-013
dbj|AK104326.1| Oryza sativa (japonica cultivar-group) cDNA... 82 7e-013
dbj|AK104801.1| Oryza sativa (japonica cultivar-group) cDNA... 82 7e-013
gb|AY644637.1| Oryza sativa (japonica cultivar-group) caffe... 82 7e-013
ref|XM_483167.1| Oryza sativa (japonica cultivar-group), mRNA 82 7e-013
ref|XM_507281.2| PREDICTED Oryza sativa (japonica cultivar-... 82 7e-013
ref|XM_507591.1| PREDICTED Oryza sativa (japonica cultivar-... 82 7e-013
dbj|AB110168.1| Oryza sativa (japonica cultivar-group) mRNA... 82 7e-013
gb|D48033.1|D48033 RICS13955A Rice green shoot Oryza sativa... 78 1e-011
gb|AU164541.1|AU164541 AU164541 Rice root Oryza sativa (jap... 76 5e-011
gb|BP184421.1|BP184421 BP184421 pNS rice panicle cDNA, germ... 76 5e-011
gb|AU184482.1|AU184482 AU184482 Rice root Oryza sativa (jap... 74 2e-010
gb|CV721179.1|CV721179 YBH--03-D01.b1 Rice before heading y... 74 2e-010
gb|BP184507.1|BP184507 BP184507 pNS rice panicle cDNA, germ... 74 2e-010
gb|AU197917.1|AU197917 AU197917 Rice green shoot Oryza sati... 72 7e-010
gb|AU197920.1|AU197920 AU197920 Rice green shoot Oryza sati... 72 7e-010
gb|CF312394.1|CF312394 ABF--08-C02.b1 ABF3-overexpressing t... 68 1e-008
gb|CF324904.1|CF324904 JMT1--01-M15.g1 AtJMT-overexpressing... 68 1e-008
gb|AU095745.1|AU095745 AU095745 Rice green shoot Oryza sati... 66 4e-008
gb|AU095774.1|AU095774 AU095774 Rice green shoot Oryza sati... 66 4e-008
gb|AU096741.1|AU096741 AU096741 Rice green shoot Oryza sati... 66 4e-008
gb|AU162815.1|AU162815 AU162815 Rice green shoot Oryza sati... 66 4e-008
gb|AU162915.1|AU162915 AU162915 Rice green shoot Oryza sati... 66 4e-008
gb|CF308395.1|CF308395 ABF--02-D07.g1 ABF3-overexpressing t... 66 4e-008
gb|AU095746.1|AU095746 AU095746 Rice green shoot Oryza sati... 62 7e-007
gb|AU030740.1|AU030740 AU030740 Rice cDNA from immature lea... 58 1e-005
gb|AU096666.1|AU096666 AU096666 Rice green shoot Oryza sati... 54 2e-004
gb|CX728127.1|CX728127 OSJNEe01K02.r OSJNEe Oryza sativa (j... 54 2e-004
gb|AU057626.1|AU057626 AU057626 Oryza sativa mature leaf Ni... 52 7e-004
gb|AU057944.1|AU057944 AU057944 Oryza sativa mature leaf Ni... 52 7e-004
gb|AU096701.1|AU096701 AU096701 Rice green shoot Oryza sati... 52 7e-004
gb|AU197908.1|AU197908 AU197908 Rice green shoot Oryza sati... 52 7e-004
gb|D48407.1|D48407 RICS14584A Rice green shoot Oryza sativa... 50 0.003
gb|CB682841.1|CB682841 OSJNEf10I23.f OSJNEf Oryza sativa (j... 50 0.003
gb|CX728657.1|CX728657 OSJNEf10I23.r OSJNEf Oryza sativa (j... 50 0.003
gb|D40454.1|D40454 RICS2451A Rice shoot Oryza sativa (japon... 48 0.010
gb|D46175.1|D46175 RICS10679A Rice green shoot Oryza sativa... 48 0.010
gb|D46192.1|D46192 RICS10710A Rice green shoot Oryza sativa... 48 0.010
gb|D47338.1|D47338 RICS12651A Rice green shoot Oryza sativa... 48 0.010
gb|D47555.1|D47555 RICS13127A Rice green shoot Oryza sativa... 48 0.010
gb|D47580.1|D47580 RICS13162A Rice green shoot Oryza sativa... 48 0.010
gb|D47599.1|D47599 RICS13186A Rice green shoot Oryza sativa... 48 0.010
gb|D48051.1|D48051 RICS13979A Rice green shoot Oryza sativa... 48 0.010
gb|D48139.1|D48139 RICS14205A Rice green shoot Oryza sativa... 48 0.010
gb|D48158.1|D48158 RICS14232A Rice green shoot Oryza sativa... 48 0.010
gb|D48309.1|D48309 RICS14446A Rice green shoot Oryza sativa... 48 0.010
gb|D48458.1|D48458 RICS14661A Rice green shoot Oryza sativa... 48 0.010
gb|D48529.1|D48529 RICS14770A Rice green shoot Oryza sativa... 48 0.010
gb|D48645.1|D48645 RICS14978A Rice green shoot Oryza sativa... 48 0.010
gb|D48758.1|D48758 RICS15150A Rice green shoot Oryza sativa... 48 0.010
gb|D15839.1|D15839 RICC1381A Rice callus Oryza sativa (japo... 48 0.010
gb|AU030254.1|AU030254 AU030254 Rice cDNA from immature lea... 48 0.010
gb|AU030405.1|AU030405 AU030405 Rice cDNA from immature lea... 48 0.010
gb|AU030739.1|AU030739 AU030739 Rice cDNA from immature lea... 48 0.010
gb|AU057625.1|AU057625 AU057625 Oryza sativa mature leaf Ni... 48 0.010
gb|AU057943.1|AU057943 AU057943 Oryza sativa mature leaf Ni... 48 0.010
gb|AU096740.1|AU096740 AU096740 Rice green shoot Oryza sati... 48 0.010
gb|AU065696.2|AU065696 AU065696 Rice cDNA from immature lea... 48 0.010
gb|AU197418.1|AU197418 AU197418 Rice cDNA from young root O... 48 0.010
gb|AU197965.1|AU197965 AU197965 Rice green shoot Oryza sati... 48 0.010
gb|AU198011.1|AU198011 AU198011 Rice green shoot Oryza sati... 48 0.010
gb|CF309649.1|CF309649 ABF--03-O16.b1 ABF3-overexpressing t... 48 0.010
gb|BP184357.1|BP184357 BP184357 pNS rice panicle cDNA, germ... 48 0.010
gb|BP184412.1|BP184412 BP184412 pNS rice panicle cDNA, germ... 48 0.010
gb|BP184433.1|BP184433 BP184433 pNS rice panicle cDNA, flow... 48 0.010
gb|BP184622.1|BP184622 BP184622 pNS rice panicle cDNA, flow... 48 0.010
gb|BP184761.1|BP184761 BP184761 pNS rice panicle cDNA, germ... 48 0.010
gb|D47341.1|D47341 RICS12656A Rice green shoot Oryza sativa... 46 0.041
gb|C19432.1|C19432 C19432 Rice panicle at ripening stage Or... 46 0.041
gb|D24716.1|D24716 RICR2427A Rice root Oryza sativa (japoni... 46 0.041
gb|C98431.1|C98431 C98431 Rice panicle at flowering stage O... 46 0.041
gb|C99197.1|C99197 C99197 Rice panicle at ripening stage Or... 46 0.041
gb|AU096278.1|AU096278 AU096278 Rice green shoot Oryza sati... 46 0.041
gb|AU222863.1|AU222863 AU222863 Rice shoot Oryza sativa (ja... 46 0.041
gb|CB669265.1|CB669265 OSJNEe01K02.f OSJNEe Oryza sativa (j... 46 0.041
gb|CF312395.1|CF312395 ABF--08-C02.g1 ABF3-overexpressing t... 46 0.041
dbj|AK100954.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.041
dbj|AK121494.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.041
gb|AACV01009158.1| Oryza sativa (japonica cultivar-group) c... 46 0.041
ref|XM_471581.1| Oryza sativa (japonica cultivar-group), p... 46 0.041
ref|NT_107195.1| Oryza sativa (japonica cultivar-group) 46 0.041
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.041
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.041
emb|AL731615.4|OSJN00256 Oryza sativa genomic DNA, chromoso... 46 0.041
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 46 0.041
gb|D39618.1|D39618 RICS1137A Rice shoot Oryza sativa (japon... 44 0.16
gb|D46171.1|D46171 RICS10673A Rice green shoot Oryza sativa... 44 0.16
gb|AU163080.1|AU163080 AU163080 Rice green shoot Oryza sati... 44 0.16
>dbj|AK065744.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039L12, full
insert sequence
Length = 1052
Score = 906 bits (457), Expect = 0.0
Identities = 655/721 (90%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 853 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 794
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggat 370
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 793 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggat 734
Query: 371 gtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtc 430
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 733 gtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtc 674
Query: 431 gtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggta 490
|||||||| ||||||||| | ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 673 gtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtggtagttgaggta 614
Query: 491 gttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccgc 550
|||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |
Sbjct: 613 gttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttgccctcctcctc 554
Query: 551 gatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgac 610
| || | ||| || || || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 553 caccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatcttgtgcgccac 494
Query: 611 gccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggc 670
|| ||||||||||| | || || ||||||||||||||||| |||||||||||||| ||
Sbjct: 493 tcccgccttctcgatcgacgggagccccagctcgtagttctcccggttgatgtccatcgc 434
Query: 671 caagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgta 730
||||||||||||||| || |||| |||||| || ||||||||||||||||||||||||||
Sbjct: 433 caagatcgtgccgtcgtcggggatggcgagggcggtggcgaggagggagtagccggtgta 374
Query: 731 gacgccgatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactg 790
||||||||||||||||||||||||||||||||||||||| | |||| ||||||||| ||
Sbjct: 373 gacgccgatctccatggtcttcttggcgccgatgagcttcagcagcaggttcaggaattg 314
Query: 791 cccctcgtcggcggaggtcgtcatcaggttccatgggtgcttggcggtgatctcgcggag 850
||||||||| || || ||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 313 cccctcgtccgccgacgtcgtcatcaggttccatgggtggttggcggtgacctcgcggag 254
Query: 851 ctccttcatgctctccggctcccgcgggtacacgctcgtgtccaggatgtactggtagag 910
||||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 253 ctccttcatgcactcgtgctcgcgcgggtacacgctcgtctccaggatgtactggtagag 194
Query: 911 gtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtcttctgctcgcc 970
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 193 atcgtcgctcttgaggaggctcttgtggccgacctccgagtgccgcgtcttctgctcgcc 134
Query: 971 g 971
|
Sbjct: 133 g 133
>gb|CB653598.1|CB653598 OSJNEc04M15.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04M15 5', mRNA sequence
Length = 723
Score = 731 bits (369), Expect = 0.0
Identities = 552/613 (90%)
Strand = Plus / Minus
Query: 359 gtagaagcggatgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttcca 418
|||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 723 gtagtagcggatgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttcca 664
Query: 419 cagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtg 478
||||||||||||||||||| ||||||||| | ||| |||||||||| ||||||||||||
Sbjct: 663 gagcgtgttgtcgtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtg 604
Query: 479 gtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggtt 538
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 603 gtagttgaggtagttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggtt 544
Query: 539 cttctcctccgcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgat 598
||||||| | | || | ||| || || || |||||||| ||||| |||||||||||
Sbjct: 543 gccctcctcctccaccagctggtccagcaccggcagcgcgggtccctcccggaagtcgat 484
Query: 599 cttgtgggcgacgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggtt 658
|||||| || || || ||||||||||| | || || ||||||||||||||||| |||||
Sbjct: 483 cttgtgcgccactcccgccttctcgatcgacgggagccccagctcgtagttctcccggtt 424
Query: 659 gatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggaggga 718
||||||||| ||||||||||||||||| || |||| |||||| || ||||||||||||||
Sbjct: 423 gatgtccatcgccaagatcgtgccgtcgtcggggatggcgagggcggtggcgaggaggga 364
Query: 719 gtagccggtgtagacgccgatctccatggtcttcttggcgccgatgagcttgatgagcat 778
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 363 gtagccggtgtagacgccgatctccatggtcttcttggcgccgatgagcttcagcagcag 304
Query: 779 gttcaggaactgcccctcgtcggcggaggtcgtcatcaggttccatgggtgcttggcggt 838
||||||||| ||||||||||| || || ||||||||||||||||||||||| ||||||||
Sbjct: 303 gttcaggaattgcccctcgtccgccgacgtcgtcatcaggttccatgggtggttggcggt 244
Query: 839 gatctcgcggagctccttcatgctctccggctcccgcgggtacacgctcgtgtccaggat 898
|| |||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||
Sbjct: 243 gacctcgcggagctccttcatgcactcgtgctcgcgcgggtacacgctcgtctccaggat 184
Query: 899 gtactggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgt 958
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 183 gtactggtagagatcgtcgctcttgaggaggctcttgtggccgacctccgagtgccgcgt 124
Query: 959 cttctgctcgccg 971
|||||||||||||
Sbjct: 123 cttctgctcgccg 111
>gb|CB653599.1|CB653599 OSJNEc04M15.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04M15 3', mRNA sequence
Length = 692
Score = 545 bits (275), Expect = e-152
Identities = 419/467 (89%)
Strand = Plus / Plus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 226 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 285
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggat 370
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 286 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggat 345
Query: 371 gtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtc 430
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 346 gtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtc 405
Query: 431 gtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggta 490
|||||||| ||||||||| | ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 406 gtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtggtagttgaggta 465
Query: 491 gttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccgc 550
|||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |
Sbjct: 466 gttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttgccctcctcctc 525
Query: 551 gatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgac 610
| || | ||| || || || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 526 caccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatcttgtgcgccac 585
Query: 611 gccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggc 670
|| ||||||||||| | || || ||||||||||||||||| |||||||||||||| ||
Sbjct: 586 tcccgccttctcgatcgacgggagccccagctcgtagttctcccggttgatgtccatcgc 645
Query: 671 caagatcgtgccgtcctccgggagggcgagcgccgtggcgaggaggg 717
||||||||||||||| || |||| |||||| || |||||||||||||
Sbjct: 646 caagatcgtgccgtcgtcggggatggcgagggcggtggcgaggaggg 692
>gb|AU182287.1|AU182287 AU182287 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1596, mRNA sequence
Length = 448
Score = 523 bits (264), Expect = e-146
Identities = 402/448 (89%)
Strand = Plus / Minus
Query: 319 cggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggatgtacttgc 378
|||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 448 cggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggatgtacttgc 389
Query: 379 gcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtcgtagccga 438
||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 388 gcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtcgtagccga 329
Query: 439 tgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggtagttgtcct 498
||||||||| | ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 328 cgaggccgccgaccttgaccagcttcatcagccgctcgtggtagttgaggtagttgtcct 269
Query: 499 tgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccgcgatgaggt 558
|||||||||| ||||| ||||||||||||||||| ||||| ||||||| | | || |
Sbjct: 268 tgtcggcgtcgacgaacacgaagtcgaacgacccatggttgccctcctcctccaccagct 209
Query: 559 cgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgacgccggcct 618
||| || || || |||||||| ||||| ||||||||||||||||| || || || ||||
Sbjct: 208 ggtccagcaccggcagcgcgggtccctcccggaagtcgatcttgtgcgccactcccgcct 149
Query: 619 tctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggccaagatcg 678
||||||| | || || ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 148 tctcgatcgacgggagccccagctcgtagttctcccggttgatgtccatcgccaagatcg 89
Query: 679 tgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgccga 738
||||||| || |||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 88 tgccgtcgtcggggatggcgagggcggtggcgaggagggagtagccggtgtagacgccga 29
Query: 739 tctccatggtcttcttggcgccgatgag 766
||||||||||||||||||||||||||||
Sbjct: 28 tctccatggtcttcttggcgccgatgag 1
>gb|AU069930.1|AU069930 AU069930 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20526_7A, mRNA sequence
Length = 609
Score = 505 bits (255), Expect = e-140
Identities = 437/494 (88%), Gaps = 3/494 (0%)
Strand = Plus / Minus
Query: 480 tagttgaggtagttgtccttgtcggcgtcc-acgaagacgaagtcgaacgacccgtggtt 538
||||||||||||||||| |||||||||| | ||||| ||||||||||||||||| || ||
Sbjct: 609 tagttgaggtagttgtctttgtcggcgttcgacgaacacgaagtcgaacgacccatgttt 550
Query: 539 cttctcctccgcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaa-gtcga 597
||||||| | | || | ||| || || || |||||||| ||||| ||||| |||||
Sbjct: 549 gccctcctcctccaccagntggtccagcaccggcagcgcgggtccctcccggaaagtcga 490
Query: 598 tcttgtgggcgacgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggt 657
||||||| || || || ||||||||||| | || || ||||||||||||||||| ||||
Sbjct: 489 tcttgtgcgccactcccgccttctcgatcgacgggagccccagctcgtagttctcccggt 430
Query: 658 tgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggaggg 717
|||||||||| ||||||||||||||||| || |||| |||||| || |||||||||||||
Sbjct: 429 tgatgtccatcgccaagatcgtgccgtcgtcggggatggcgagggcggtggcgaggaggg 370
Query: 718 agtagccggtgtagacgccgatctccatggtcttcttggcgccgatgagcttgatgagca 777
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 369 agtagccggtgtagacgccgatctccatggtcttcttggcgccgatgagcttcagcagca 310
Query: 778 tgttcaggaactgcccctcgtcggcggaggtcgtcatcaggttccatgggtgcttggcgg 837
||||||||| ||||||||||| || || ||||||||||||||||||||||| |||||||
Sbjct: 309 ggttcaggaattgcccctcgtccgccgacgtcgtcatcaggttccatgggtggttggcgg 250
Query: 838 tgatctcgcggagctccttcatgctctccggctcccgcgggtacacgctcgtgtccagga 897
||| |||||||||||||||||||| || || || ||||||||||||||||| |||||||
Sbjct: 249 tgacctcgcggagctccttcatgcact-cgtgtcgcgcgggtacacgctcgtctccagga 191
Query: 898 tgtactggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcg 957
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 190 tgtactggtagagatcgtcgctcttgaggaggctcttgtggccgacctccgagtgccgcg 131
Query: 958 tcttctgctcgccg 971
||||||||||||||
Sbjct: 130 tcttctgctcgccg 117
>gb|AY644636.1| Oryza sativa (japonica cultivar-group) caffeoyl-CoA
O-methyltransferase (COA1) gene, complete cds
Length = 1272
Score = 505 bits (255), Expect = e-140
Identities = 384/427 (89%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1172 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 1113
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggat 370
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 1112 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggat 1053
Query: 371 gtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtc 430
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 1052 gtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtc 993
Query: 431 gtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggta 490
|||||||| ||||||||| | ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 992 gtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtggtagttgaggta 933
Query: 491 gttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccgc 550
|||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |
Sbjct: 932 gttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttgccctcctcctc 873
Query: 551 gatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgac 610
| || | ||| || || || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 872 caccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatcttgtgcgccac 813
Query: 611 gccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggc 670
|| ||||||||||| | || || ||||||||||||||||| |||||||||||||| ||
Sbjct: 812 tcccgccttctcgatcgacgggagccccagctcgtagttctcccggttgatgtccatcgc 753
Query: 671 caagatc 677
|||||||
Sbjct: 752 caagatc 746
Score = 186 bits (94), Expect = 2e-044
Identities = 133/146 (91%)
Strand = Plus / Minus
Query: 677 cgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgcc 736
||||||||| || |||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 653 cgtgccgtcgtcggggatggcgagggcggtggcgaggagggagtagccggtgtagacgcc 594
Query: 737 gatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctc 796
||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 593 gatctccatggtcttcttggcgccgatgagcttcagcagcaggttcaggaattgcccctc 534
Query: 797 gtcggcggaggtcgtcatcaggttcc 822
||| || || ||||||||||||||||
Sbjct: 533 gtccgccgacgtcgtcatcaggttcc 508
Score = 115 bits (58), Expect = 5e-023
Identities = 67/70 (95%)
Strand = Plus / Minus
Query: 902 ctggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtctt 961
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 232 ctggtagagatcgtcgctcttgaggaggctcttgtggccgacctccgagtgccgcgtctt 173
Query: 962 ctgctcgccg 971
||||||||||
Sbjct: 172 ctgctcgccg 163
Score = 111 bits (56), Expect = 8e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 821 ccatgggtgcttggcggtgatctcgcggagctccttcatgctctccggctcccgcgggta 880
||||||||| |||||||||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 411 ccatgggtggttggcggtgacctcgcggagctccttcatgcactcgtgctcgcgcgggta 352
Query: 881 cacgctcgtgtccaggatgtactg 904
||||||||| ||||||||||||||
Sbjct: 351 cacgctcgtctccaggatgtactg 328
>gb|AACV01013091.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013091, whole
genome shotgun sequence
Length = 25948
Score = 505 bits (255), Expect = e-140
Identities = 384/427 (89%)
Strand = Plus / Plus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 10955 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 11014
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggat 370
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 11015 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggat 11074
Query: 371 gtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtc 430
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 11075 gtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtc 11134
Query: 431 gtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggta 490
|||||||| ||||||||| | ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 11135 gtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtggtagttgaggta 11194
Query: 491 gttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccgc 550
|||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |
Sbjct: 11195 gttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttgccctcctcctc 11254
Query: 551 gatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgac 610
| || | ||| || || || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 11255 caccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatcttgtgcgccac 11314
Query: 611 gccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggc 670
|| ||||||||||| | || || ||||||||||||||||| |||||||||||||| ||
Sbjct: 11315 tcccgccttctcgatcgacgggagccccagctcgtagttctcccggttgatgtccatcgc 11374
Query: 671 caagatc 677
|||||||
Sbjct: 11375 caagatc 11381
Score = 186 bits (94), Expect = 2e-044
Identities = 133/146 (91%)
Strand = Plus / Plus
Query: 677 cgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgcc 736
||||||||| || |||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 11474 cgtgccgtcgtcggggatggcgagggcggtggcgaggagggagtagccggtgtagacgcc 11533
Query: 737 gatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctc 796
||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 11534 gatctccatggtcttcttggcgccgatgagcttcagcagcaggttcaggaattgcccctc 11593
Query: 797 gtcggcggaggtcgtcatcaggttcc 822
||| || || ||||||||||||||||
Sbjct: 11594 gtccgccgacgtcgtcatcaggttcc 11619
Score = 115 bits (58), Expect = 5e-023
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 902 ctggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtctt 961
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 11894 ctggtagagatcgtcgctcttgaggaggctcttgtggccgacctccgagtgccgcgtctt 11953
Query: 962 ctgctcgccg 971
||||||||||
Sbjct: 11954 ctgctcgccg 11963
Score = 111 bits (56), Expect = 8e-022
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 821 ccatgggtgcttggcggtgatctcgcggagctccttcatgctctccggctcccgcgggta 880
||||||||| |||||||||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 11715 ccatgggtggttggcggtgacctcgcggagctccttcatgcactcgtgctcgcgcgggta 11774
Query: 881 cacgctcgtgtccaggatgtactg 904
||||||||| ||||||||||||||
Sbjct: 11775 cacgctcgtctccaggatgtactg 11798
>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
clone P0680A03
Length = 156054
Score = 505 bits (255), Expect = e-140
Identities = 384/427 (89%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5799 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 5740
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggat 370
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 5739 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggat 5680
Query: 371 gtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtc 430
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 5679 gtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtc 5620
Query: 431 gtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggta 490
|||||||| ||||||||| | ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 5619 gtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtggtagttgaggta 5560
Query: 491 gttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccgc 550
|||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |
Sbjct: 5559 gttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttgccctcctcctc 5500
Query: 551 gatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgac 610
| || | ||| || || || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 5499 caccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatcttgtgcgccac 5440
Query: 611 gccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggc 670
|| ||||||||||| | || || ||||||||||||||||| |||||||||||||| ||
Sbjct: 5439 tcccgccttctcgatcgacgggagccccagctcgtagttctcccggttgatgtccatcgc 5380
Query: 671 caagatc 677
|||||||
Sbjct: 5379 caagatc 5373
Score = 186 bits (94), Expect = 2e-044
Identities = 133/146 (91%)
Strand = Plus / Minus
Query: 677 cgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgcc 736
||||||||| || |||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 5280 cgtgccgtcgtcggggatggcgagggcggtggcgaggagggagtagccggtgtagacgcc 5221
Query: 737 gatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctc 796
||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 5220 gatctccatggtcttcttggcgccgatgagcttcagcagcaggttcaggaattgcccctc 5161
Query: 797 gtcggcggaggtcgtcatcaggttcc 822
||| || || ||||||||||||||||
Sbjct: 5160 gtccgccgacgtcgtcatcaggttcc 5135
Score = 115 bits (58), Expect = 5e-023
Identities = 67/70 (95%)
Strand = Plus / Minus
Query: 902 ctggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtctt 961
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 4859 ctggtagagatcgtcgctcttgaggaggctcttgtggccgacctccgagtgccgcgtctt 4800
Query: 962 ctgctcgccg 971
||||||||||
Sbjct: 4799 ctgctcgccg 4790
Score = 111 bits (56), Expect = 8e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 821 ccatgggtgcttggcggtgatctcgcggagctccttcatgctctccggctcccgcgggta 880
||||||||| |||||||||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 5038 ccatgggtggttggcggtgacctcgcggagctccttcatgcactcgtgctcgcgcgggta 4979
Query: 881 cacgctcgtgtccaggatgtactg 904
||||||||| ||||||||||||||
Sbjct: 4978 cacgctcgtctccaggatgtactg 4955
>dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0015I14
Length = 150650
Score = 505 bits (255), Expect = e-140
Identities = 384/427 (89%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 101608 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 101549
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggat 370
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 101548 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggat 101489
Query: 371 gtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtc 430
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 101488 gtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtc 101429
Query: 431 gtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggta 490
|||||||| ||||||||| | ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 101428 gtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtggtagttgaggta 101369
Query: 491 gttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccgc 550
|||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |
Sbjct: 101368 gttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttgccctcctcctc 101309
Query: 551 gatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgac 610
| || | ||| || || || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 101308 caccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatcttgtgcgccac 101249
Query: 611 gccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggc 670
|| ||||||||||| | || || ||||||||||||||||| |||||||||||||| ||
Sbjct: 101248 tcccgccttctcgatcgacgggagccccagctcgtagttctcccggttgatgtccatcgc 101189
Query: 671 caagatc 677
|||||||
Sbjct: 101188 caagatc 101182
Score = 186 bits (94), Expect = 2e-044
Identities = 133/146 (91%)
Strand = Plus / Minus
Query: 677 cgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgcc 736
||||||||| || |||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 101089 cgtgccgtcgtcggggatggcgagggcggtggcgaggagggagtagccggtgtagacgcc 101030
Query: 737 gatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctc 796
||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 101029 gatctccatggtcttcttggcgccgatgagcttcagcagcaggttcaggaattgcccctc 100970
Query: 797 gtcggcggaggtcgtcatcaggttcc 822
||| || || ||||||||||||||||
Sbjct: 100969 gtccgccgacgtcgtcatcaggttcc 100944
Score = 115 bits (58), Expect = 5e-023
Identities = 67/70 (95%)
Strand = Plus / Minus
Query: 902 ctggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtctt 961
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 100668 ctggtagagatcgtcgctcttgaggaggctcttgtggccgacctccgagtgccgcgtctt 100609
Query: 962 ctgctcgccg 971
||||||||||
Sbjct: 100608 ctgctcgccg 100599
Score = 111 bits (56), Expect = 8e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 821 ccatgggtgcttggcggtgatctcgcggagctccttcatgctctccggctcccgcgggta 880
||||||||| |||||||||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 100847 ccatgggtggttggcggtgacctcgcggagctccttcatgcactcgtgctcgcgcgggta 100788
Query: 881 cacgctcgtgtccaggatgtactg 904
||||||||| ||||||||||||||
Sbjct: 100787 cacgctcgtctccaggatgtactg 100764
>ref|NT_079872.2| Oryza sativa (japonica cultivar-group)
Length = 1124013
Score = 505 bits (255), Expect = e-140
Identities = 384/427 (89%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 402276 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 402217
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggat 370
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 402216 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggat 402157
Query: 371 gtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtc 430
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 402156 gtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtc 402097
Query: 431 gtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggta 490
|||||||| ||||||||| | ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 402096 gtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtggtagttgaggta 402037
Query: 491 gttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccgc 550
|||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |
Sbjct: 402036 gttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttgccctcctcctc 401977
Query: 551 gatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgac 610
| || | ||| || || || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 401976 caccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatcttgtgcgccac 401917
Query: 611 gccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggc 670
|| ||||||||||| | || || ||||||||||||||||| |||||||||||||| ||
Sbjct: 401916 tcccgccttctcgatcgacgggagccccagctcgtagttctcccggttgatgtccatcgc 401857
Query: 671 caagatc 677
|||||||
Sbjct: 401856 caagatc 401850
Score = 186 bits (94), Expect = 2e-044
Identities = 133/146 (91%)
Strand = Plus / Minus
Query: 677 cgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgcc 736
||||||||| || |||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 401757 cgtgccgtcgtcggggatggcgagggcggtggcgaggagggagtagccggtgtagacgcc 401698
Query: 737 gatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctc 796
||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 401697 gatctccatggtcttcttggcgccgatgagcttcagcagcaggttcaggaattgcccctc 401638
Query: 797 gtcggcggaggtcgtcatcaggttcc 822
||| || || ||||||||||||||||
Sbjct: 401637 gtccgccgacgtcgtcatcaggttcc 401612
Score = 115 bits (58), Expect = 5e-023
Identities = 67/70 (95%)
Strand = Plus / Minus
Query: 902 ctggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtctt 961
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 401336 ctggtagagatcgtcgctcttgaggaggctcttgtggccgacctccgagtgccgcgtctt 401277
Query: 962 ctgctcgccg 971
||||||||||
Sbjct: 401276 ctgctcgccg 401267
Score = 111 bits (56), Expect = 8e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 821 ccatgggtgcttggcggtgatctcgcggagctccttcatgctctccggctcccgcgggta 880
||||||||| |||||||||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 401515 ccatgggtggttggcggtgacctcgcggagctccttcatgcactcgtgctcgcgcgggta 401456
Query: 881 cacgctcgtgtccaggatgtactg 904
||||||||| ||||||||||||||
Sbjct: 401455 cacgctcgtctccaggatgtactg 401432
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 505 bits (255), Expect = e-140
Identities = 384/427 (89%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3207622 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 3207563
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggat 370
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 3207562 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggat 3207503
Query: 371 gtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtc 430
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 3207502 gtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtc 3207443
Query: 431 gtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggta 490
|||||||| ||||||||| | ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 3207442 gtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtggtagttgaggta 3207383
Query: 491 gttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccgc 550
|||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |
Sbjct: 3207382 gttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttgccctcctcctc 3207323
Query: 551 gatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgac 610
| || | ||| || || || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 3207322 caccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatcttgtgcgccac 3207263
Query: 611 gccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggc 670
|| ||||||||||| | || || ||||||||||||||||| |||||||||||||| ||
Sbjct: 3207262 tcccgccttctcgatcgacgggagccccagctcgtagttctcccggttgatgtccatcgc 3207203
Query: 671 caagatc 677
|||||||
Sbjct: 3207202 caagatc 3207196
Score = 186 bits (94), Expect = 2e-044
Identities = 133/146 (91%)
Strand = Plus / Minus
Query: 677 cgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgcc 736
||||||||| || |||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 3207103 cgtgccgtcgtcggggatggcgagggcggtggcgaggagggagtagccggtgtagacgcc 3207044
Query: 737 gatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctc 796
||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 3207043 gatctccatggtcttcttggcgccgatgagcttcagcagcaggttcaggaattgcccctc 3206984
Query: 797 gtcggcggaggtcgtcatcaggttcc 822
||| || || ||||||||||||||||
Sbjct: 3206983 gtccgccgacgtcgtcatcaggttcc 3206958
Score = 115 bits (58), Expect = 5e-023
Identities = 67/70 (95%)
Strand = Plus / Minus
Query: 902 ctggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtctt 961
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 3206683 ctggtagagatcgtcgctcttgaggaggctcttgtggccgacctccgagtgccgcgtctt 3206624
Query: 962 ctgctcgccg 971
||||||||||
Sbjct: 3206623 ctgctcgccg 3206614
Score = 111 bits (56), Expect = 8e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 821 ccatgggtgcttggcggtgatctcgcggagctccttcatgctctccggctcccgcgggta 880
||||||||| |||||||||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 3206862 ccatgggtggttggcggtgacctcgcggagctccttcatgcactcgtgctcgcgcgggta 3206803
Query: 881 cacgctcgtgtccaggatgtactg 904
||||||||| ||||||||||||||
Sbjct: 3206802 cacgctcgtctccaggatgtactg 3206779
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 505 bits (255), Expect = e-140
Identities = 384/427 (89%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3207622 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 3207563
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggat 370
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 3207562 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggat 3207503
Query: 371 gtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtc 430
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 3207502 gtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtc 3207443
Query: 431 gtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggta 490
|||||||| ||||||||| | ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 3207442 gtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtggtagttgaggta 3207383
Query: 491 gttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccgc 550
|||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |
Sbjct: 3207382 gttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttgccctcctcctc 3207323
Query: 551 gatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgac 610
| || | ||| || || || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 3207322 caccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatcttgtgcgccac 3207263
Query: 611 gccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggc 670
|| ||||||||||| | || || ||||||||||||||||| |||||||||||||| ||
Sbjct: 3207262 tcccgccttctcgatcgacgggagccccagctcgtagttctcccggttgatgtccatcgc 3207203
Query: 671 caagatc 677
|||||||
Sbjct: 3207202 caagatc 3207196
Score = 186 bits (94), Expect = 2e-044
Identities = 133/146 (91%)
Strand = Plus / Minus
Query: 677 cgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgcc 736
||||||||| || |||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 3207103 cgtgccgtcgtcggggatggcgagggcggtggcgaggagggagtagccggtgtagacgcc 3207044
Query: 737 gatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctc 796
||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 3207043 gatctccatggtcttcttggcgccgatgagcttcagcagcaggttcaggaattgcccctc 3206984
Query: 797 gtcggcggaggtcgtcatcaggttcc 822
||| || || ||||||||||||||||
Sbjct: 3206983 gtccgccgacgtcgtcatcaggttcc 3206958
Score = 115 bits (58), Expect = 5e-023
Identities = 67/70 (95%)
Strand = Plus / Minus
Query: 902 ctggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtctt 961
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 3206683 ctggtagagatcgtcgctcttgaggaggctcttgtggccgacctccgagtgccgcgtctt 3206624
Query: 962 ctgctcgccg 971
||||||||||
Sbjct: 3206623 ctgctcgccg 3206614
Score = 111 bits (56), Expect = 8e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 821 ccatgggtgcttggcggtgatctcgcggagctccttcatgctctccggctcccgcgggta 880
||||||||| |||||||||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 3206862 ccatgggtggttggcggtgacctcgcggagctccttcatgcactcgtgctcgcgcgggta 3206803
Query: 881 cacgctcgtgtccaggatgtactg 904
||||||||| ||||||||||||||
Sbjct: 3206802 cacgctcgtctccaggatgtactg 3206779
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 505 bits (255), Expect = e-140
Identities = 384/427 (89%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3314245 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 3314186
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggat 370
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 3314185 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggat 3314126
Query: 371 gtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtc 430
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 3314125 gtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtc 3314066
Query: 431 gtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggta 490
|||||||| ||||||||| | ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 3314065 gtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtggtagttgaggta 3314006
Query: 491 gttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccgc 550
|||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |
Sbjct: 3314005 gttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggttgccctcctcctc 3313946
Query: 551 gatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgac 610
| || | ||| || || || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 3313945 caccagctggtccagcaccggcagcgcgggtccctcccggaagtcgatcttgtgcgccac 3313886
Query: 611 gccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggc 670
|| ||||||||||| | || || ||||||||||||||||| |||||||||||||| ||
Sbjct: 3313885 tcccgccttctcgatcgacgggagccccagctcgtagttctcccggttgatgtccatcgc 3313826
Query: 671 caagatc 677
|||||||
Sbjct: 3313825 caagatc 3313819
Score = 186 bits (94), Expect = 2e-044
Identities = 133/146 (91%)
Strand = Plus / Minus
Query: 677 cgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgcc 736
||||||||| || |||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 3313726 cgtgccgtcgtcggggatggcgagggcggtggcgaggagggagtagccggtgtagacgcc 3313667
Query: 737 gatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctc 796
||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 3313666 gatctccatggtcttcttggcgccgatgagcttcagcagcaggttcaggaattgcccctc 3313607
Query: 797 gtcggcggaggtcgtcatcaggttcc 822
||| || || ||||||||||||||||
Sbjct: 3313606 gtccgccgacgtcgtcatcaggttcc 3313581
Score = 115 bits (58), Expect = 5e-023
Identities = 67/70 (95%)
Strand = Plus / Minus
Query: 902 ctggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtctt 961
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 3313305 ctggtagagatcgtcgctcttgaggaggctcttgtggccgacctccgagtgccgcgtctt 3313246
Query: 962 ctgctcgccg 971
||||||||||
Sbjct: 3313245 ctgctcgccg 3313236
Score = 111 bits (56), Expect = 8e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 821 ccatgggtgcttggcggtgatctcgcggagctccttcatgctctccggctcccgcgggta 880
||||||||| |||||||||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 3313484 ccatgggtggttggcggtgacctcgcggagctccttcatgcactcgtgctcgcgcgggta 3313425
Query: 881 cacgctcgtgtccaggatgtactg 904
||||||||| ||||||||||||||
Sbjct: 3313424 cacgctcgtctccaggatgtactg 3313401
>gb|CV728538.1|CV728538 COLD--01-N06.b1 Cold treated rice leaf lambda phage cDNA library
(COLD) Oryza sativa (japonica cultivar-group) cDNA clone
COLD--01-N06, mRNA sequence
Length = 444
Score = 468 bits (236), Expect = e-129
Identities = 311/336 (92%)
Strand = Plus / Minus
Query: 636 cccagctcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagg 695
||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||| |
Sbjct: 430 cccagctcgtagttctcccggttgatgtccatcgccaagatcgtgccgtcgtcggggatg 371
Query: 696 gcgagcgccgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttg 755
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gcgagggcggtggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttg 311
Query: 756 gcgccgatgagcttgatgagcatgttcaggaactgcccctcgtcggcggaggtcgtcatc 815
|||||||||||||| | |||| ||||||||| ||||||||||| || || |||||||||
Sbjct: 310 gcgccgatgagcttcagcagcaggttcaggaattgcccctcgtccgccgacgtcgtcatc 251
Query: 816 aggttccatgggtgcttggcggtgatctcgcggagctccttcatgctctccggctcccgc 875
|||||||||||||| |||||||||| |||||||||||||||||||| ||| |||| |||
Sbjct: 250 aggttccatgggtggttggcggtgacctcgcggagctccttcatgcactcgtgctcgcgc 191
Query: 876 gggtacacgctcgtgtccaggatgtactggtagaggtcgtcgctcttgagcaggctcttg 935
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 190 gggtacacgctcgtctccaggatgtactggtagagatcgtcgctcttgaggaggctcttg 131
Query: 936 tggccgacctcggagtgccgcgtcttctgctcgccg 971
||||||||||| ||||||||||||||||||||||||
Sbjct: 130 tggccgacctccgagtgccgcgtcttctgctcgccg 95
>gb|CF293401.1|CF293401 30DGS--02-J06.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--02-J06, mRNA sequence
Length = 474
Score = 460 bits (232), Expect = e-127
Identities = 310/336 (92%)
Strand = Plus / Minus
Query: 636 cccagctcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagg 695
||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||| |
Sbjct: 467 cccagctcgtagttctcccggttgatgtccatcgccaagatcgtgccgtcgtcggggatg 408
Query: 696 gcgagcgccgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttg 755
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gcgagggcggtggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttg 348
Query: 756 gcgccgatgagcttgatgagcatgttcaggaactgcccctcgtcggcggaggtcgtcatc 815
|||||||||||||| | |||| | ||||||| ||||||||||| || || |||||||||
Sbjct: 347 gcgccgatgagcttcagcagcaggctcaggaattgcccctcgtccgccgacgtcgtcatc 288
Query: 816 aggttccatgggtgcttggcggtgatctcgcggagctccttcatgctctccggctcccgc 875
|||||||||||||| |||||||||| |||||||||||||||||||| ||| |||| |||
Sbjct: 287 aggttccatgggtggttggcggtgacctcgcggagctccttcatgcactcgtgctcgcgc 228
Query: 876 gggtacacgctcgtgtccaggatgtactggtagaggtcgtcgctcttgagcaggctcttg 935
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 227 gggtacacgctcgtctccaggatgtactggtagagatcgtcgctcttgaggaggctcttg 168
Query: 936 tggccgacctcggagtgccgcgtcttctgctcgccg 971
||||||||||| ||||||||||||||||||||||||
Sbjct: 167 tggccgacctccgagtgccgcgtcttctgctcgccg 132
>gb|CV721193.1|CV721193 YBH--03-D16.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--03-D16, mRNA sequence
Length = 344
Score = 454 bits (229), Expect = e-125
Identities = 307/333 (92%)
Strand = Plus / Minus
Query: 636 cccagctcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagg 695
||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||| |
Sbjct: 337 cccagctcgtagttctcccggttgatgtccatcgccaagatcgtgccgtcgtcggggatg 278
Query: 696 gcgagcgccgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttg 755
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gcgagggcggtggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttg 218
Query: 756 gcgccgatgagcttgatgagcatgttcaggaactgcccctcgtcggcggaggtcgtcatc 815
|||||||||||||| | |||| ||||||||| ||||||||||| || || |||||||||
Sbjct: 217 gcgccgatgagcttcagcagcaggttcaggaattgcccctcgtccgccgacgtcgtcatc 158
Query: 816 aggttccatgggtgcttggcggtgatctcgcggagctccttcatgctctccggctcccgc 875
|||||||||||||| |||||||||| |||||||||||||||||||| ||| |||| |||
Sbjct: 157 aggttccatgggtggttggcggtgacctcgcggagctccttcatgcactcgtgctcgcgc 98
Query: 876 gggtacacgctcgtgtccaggatgtactggtagaggtcgtcgctcttgagcaggctcttg 935
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 97 gggtacacgctcgtctccaggatgtactggtagagatcgtcgctcttgaggaggctcttg 38
Query: 936 tggccgacctcggagtgccgcgtcttctgctcg 968
||||||||||| |||||||||||||||| ||||
Sbjct: 37 tggccgacctccgagtgccgcgtcttctcctcg 5
>gb|CF293402.1|CF293402 30DGS--02-J06.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--02-J06, mRNA sequence
Length = 546
Score = 436 bits (220), Expect = e-119
Identities = 271/288 (94%)
Strand = Plus / Plus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 213 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 272
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggat 370
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 273 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggat 332
Query: 371 gtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtc 430
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 333 gtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtc 392
Query: 431 gtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggta 490
|||||||| ||||||||| | ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 393 gtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtggtagttgaggta 452
Query: 491 gttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggtt 538
|||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 453 gttgtccttgtcggcgtcgacgaacacgaagtcgaacgacccatggtt 500
>gb|CA756287.1|CA756287 BR030039000_PLATE_D05_36_044.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030039000_PLATE_D05_36_044.ab1 similar to ESTs
AU058067(E20733), AAU058070(E20873) correspond to a,
mRNA sequence
Length = 624
Score = 402 bits (203), Expect = e-109
Identities = 272/295 (92%)
Strand = Plus / Minus
Query: 677 cgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgcc 736
||||||||| || |||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 409 cgtgccgtcgtcggggatggcgagggcggtggcgaggagggagtagccggtgtagacgcc 350
Query: 737 gatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctc 796
||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 349 gatctccatggtcttcttggcgccgatgagcttcagcagcaggttcaggaattgcccctc 290
Query: 797 gtcggcggaggtcgtcatcaggttccatgggtgcttggcggtgatctcgcggagctcctt 856
||| || || ||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 289 gtccgccgacgtcgtcatcaggttccatgggtggttggcggtgacctcgcggagctcctt 230
Query: 857 catgctctccggctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtc 916
||||| ||| |||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 229 catgcactcgtgctcgcgcgggtacacgctcgtctccaggatgtactggtagagatcgtc 170
Query: 917 gctcttgagcaggctcttgtggccgacctcggagtgccgcgtcttctgctcgccg 971
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 169 gctcttgaggaggctcttgtggccgacctccgagtgccgcgtcttctgctcgccg 115
Score = 99.6 bits (50), Expect = 3e-018
Identities = 91/105 (86%)
Strand = Plus / Minus
Query: 573 agcgcgggaccctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggc 632
|||||||| ||||| ||||||||||||| ||| || || || ||||||||||| | ||
Sbjct: 606 agcgcgggtccctcccggaagtcgatctngtgcgccactcccgccttctcgatcgacggg 547
Query: 633 aggcccagctcgtagttctcgcggttgatgtccatggccaagatc 677
|| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 546 agccccagctcgtagttctcccggttgatgtccatcgccaagatc 502
>gb|AU198028.1|AU198028 AU198028 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S15067, mRNA sequence
Length = 451
Score = 400 bits (202), Expect = e-109
Identities = 244/258 (94%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 258 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 199
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggat 370
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 198 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggat 139
Query: 371 gtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtc 430
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 138 gtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtc 79
Query: 431 gtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggta 490
|||||||| ||||||||| | ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 78 gtagccgacgaggccgccgaccttgaccagcttcatcagccgctcgtggtagttgaggta 19
Query: 491 gttgtccttgtcggcgtc 508
||||||||||||||||||
Sbjct: 18 gttgtccttgtcggcgtc 1
>gb|AU182288.1|AU182288 AU182288 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1596, mRNA sequence
Length = 426
Score = 351 bits (177), Expect = 5e-094
Identities = 221/236 (93%)
Strand = Plus / Minus
Query: 253 acttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgc 312
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 237 acttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgacgc 178
Query: 313 ggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggatgt 372
||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 177 ggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggatgt 118
Query: 373 acttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtcgt 432
||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 117 acttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttgtcgt 58
Query: 433 agccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgagg 488
|||||| ||||||||| | ||| |||||||||| ||||||||||||| ||||||||
Sbjct: 57 agccgacgaggccgccgaccttgaccagcttcatcagccgctcgtggnagttgagg 2
>gb|AU058070.1|AU058070 AU058070 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20873_1A, mRNA sequence
Length = 420
Score = 297 bits (150), Expect = 7e-078
Identities = 187/198 (94%), Gaps = 1/198 (0%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 197 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 138
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcggat 370
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 137 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcggat 78
Query: 371 gtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgtc 430
||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct: 77 gtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagcgtgttg-c 19
Query: 431 gtagccgatgaggccgcc 448
|||||||| |||||||||
Sbjct: 18 gtagccgacgaggccgcc 1
>gb|AU058067.2|AU058067 AU058067 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20733_1A, mRNA sequence
Length = 294
Score = 186 bits (94), Expect = 2e-044
Identities = 112/118 (94%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 118 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 59
Query: 311 gcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgg 368
||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 58 gcggtggtcggcggcgagggccttgttgagctcgagcacgaagtcgcggtagtagcgg 1
>dbj|AK061757.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A06, full
insert sequence
Length = 1149
Score = 170 bits (86), Expect = 1e-039
Identities = 251/306 (82%)
Strand = Plus / Minus
Query: 455 caccagcttcagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaa 514
||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||
Sbjct: 743 caccagccgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaa 684
Query: 515 gacgaagtcgaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggag 574
||||||||||| ||| | ||||| ||| | |||| ||||| |||||||| ||| |
Sbjct: 683 cgcgaagtcgaacttcccctcgttctcctcgttggcgaggaggttgtcgaggatgggcat 624
Query: 575 cgcgggaccctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcag 634
|||| |||||||||||||||| ||||||||||||||||||||||| |||| ||| ||
Sbjct: 623 ggcggcgccctcgcggaagtcgaccttgtgggcgacgccggccttcttgatgacggggag 564
Query: 635 gcccagctcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggag 694
||| || ||| ||| ||| ||| ||| ||| ||||| | || | ||||||| |||||||
Sbjct: 563 gccgaggtcgaagtactcccggctgacgtcgatggcgacgaccttgccgtcgtccgggat 504
Query: 695 ggcgagcgccgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttctt 754
||||||||| |||||||| | |||| |||||||| | ||||| | ||| ||||| |||||
Sbjct: 503 ggcgagcgcggtggcgagcacggagcagccggtgaacacgcccacctcgatggtgttctt 444
Query: 755 ggcgcc 760
||||||
Sbjct: 443 ggcgcc 438
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctg 298
||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 938 gcggcggcagagggtgatgccgtcggagaccgggagctg 900
>dbj|AK065515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030H15, full
insert sequence
Length = 1466
Score = 170 bits (86), Expect = 1e-039
Identities = 251/306 (82%)
Strand = Plus / Minus
Query: 455 caccagcttcagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaa 514
||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||
Sbjct: 896 caccagccgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaa 837
Query: 515 gacgaagtcgaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggag 574
||||||||||| ||| | ||||| ||| | |||| ||||| |||||||| ||| |
Sbjct: 836 cgcgaagtcgaacttcccctcgttctcctcgttggcgaggaggttgtcgaggatgggcat 777
Query: 575 cgcgggaccctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcag 634
|||| |||||||||||||||| ||||||||||||||||||||||| |||| ||| ||
Sbjct: 776 ggcggcgccctcgcggaagtcgaccttgtgggcgacgccggccttcttgatgacggggag 717
Query: 635 gcccagctcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggag 694
||| || ||| ||| ||| ||| ||| ||| ||||| | || | ||||||| |||||||
Sbjct: 716 gccgaggtcgaagtactcccggctgacgtcgatggcgacgaccttgccgtcgtccgggat 657
Query: 695 ggcgagcgccgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttctt 754
||||||||| |||||||| | |||| |||||||| | ||||| | ||| ||||| |||||
Sbjct: 656 ggcgagcgcggtggcgagcacggagcagccggtgaacacgcccacctcgatggtgttctt 597
Query: 755 ggcgcc 760
||||||
Sbjct: 596 ggcgcc 591
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctg 298
||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 1091 gcggcggcagagggtgatgccgtcggagaccgggagctg 1053
>ref|XM_483169.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 879
Score = 170 bits (86), Expect = 1e-039
Identities = 251/306 (82%)
Strand = Plus / Minus
Query: 455 caccagcttcagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaa 514
||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||
Sbjct: 675 caccagccgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaa 616
Query: 515 gacgaagtcgaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggag 574
||||||||||| ||| | ||||| ||| | |||| ||||| |||||||| ||| |
Sbjct: 615 cgcgaagtcgaacttcccctcgttctcctcgttggcgaggaggttgtcgaggatgggcat 556
Query: 575 cgcgggaccctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcag 634
|||| |||||||||||||||| ||||||||||||||||||||||| |||| ||| ||
Sbjct: 555 ggcggcgccctcgcggaagtcgaccttgtgggcgacgccggccttcttgatgacggggag 496
Query: 635 gcccagctcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggag 694
||| || ||| ||| ||| ||| ||| ||| ||||| | || | ||||||| |||||||
Sbjct: 495 gccgaggtcgaagtactcccggctgacgtcgatggcgacgaccttgccgtcgtccgggat 436
Query: 695 ggcgagcgccgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttctt 754
||||||||| |||||||| | |||| |||||||| | ||||| | ||| ||||| |||||
Sbjct: 435 ggcgagcgcggtggcgagcacggagcagccggtgaacacgcccacctcgatggtgttctt 376
Query: 755 ggcgcc 760
||||||
Sbjct: 375 ggcgcc 370
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctg 298
||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 870 gcggcggcagagggtgatgccgtcggagaccgggagctg 832
>ref|XM_483170.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 612
Score = 170 bits (86), Expect = 1e-039
Identities = 251/306 (82%)
Strand = Plus / Minus
Query: 455 caccagcttcagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaa 514
||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||
Sbjct: 408 caccagccgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaa 349
Query: 515 gacgaagtcgaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggag 574
||||||||||| ||| | ||||| ||| | |||| ||||| |||||||| ||| |
Sbjct: 348 cgcgaagtcgaacttcccctcgttctcctcgttggcgaggaggttgtcgaggatgggcat 289
Query: 575 cgcgggaccctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcag 634
|||| |||||||||||||||| ||||||||||||||||||||||| |||| ||| ||
Sbjct: 288 ggcggcgccctcgcggaagtcgaccttgtgggcgacgccggccttcttgatgacggggag 229
Query: 635 gcccagctcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggag 694
||| || ||| ||| ||| ||| ||| ||| ||||| | || | ||||||| |||||||
Sbjct: 228 gccgaggtcgaagtactcccggctgacgtcgatggcgacgaccttgccgtcgtccgggat 169
Query: 695 ggcgagcgccgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttctt 754
||||||||| |||||||| | |||| |||||||| | ||||| | ||| ||||| |||||
Sbjct: 168 ggcgagcgcggtggcgagcacggagcagccggtgaacacgcccacctcgatggtgttctt 109
Query: 755 ggcgcc 760
||||||
Sbjct: 108 ggcgcc 103
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctg 298
||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 603 gcggcggcagagggtgatgccgtcggagaccgggagctg 565
>ref|XM_507282.1| PREDICTED Oryza sativa (japonica cultivar-group), P0026F07.26-2
mRNA
Length = 1149
Score = 170 bits (86), Expect = 1e-039
Identities = 251/306 (82%)
Strand = Plus / Minus
Query: 455 caccagcttcagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaa 514
||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||
Sbjct: 743 caccagccgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaa 684
Query: 515 gacgaagtcgaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggag 574
||||||||||| ||| | ||||| ||| | |||| ||||| |||||||| ||| |
Sbjct: 683 cgcgaagtcgaacttcccctcgttctcctcgttggcgaggaggttgtcgaggatgggcat 624
Query: 575 cgcgggaccctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcag 634
|||| |||||||||||||||| ||||||||||||||||||||||| |||| ||| ||
Sbjct: 623 ggcggcgccctcgcggaagtcgaccttgtgggcgacgccggccttcttgatgacggggag 564
Query: 635 gcccagctcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggag 694
||| || ||| ||| ||| ||| ||| ||| ||||| | || | ||||||| |||||||
Sbjct: 563 gccgaggtcgaagtactcccggctgacgtcgatggcgacgaccttgccgtcgtccgggat 504
Query: 695 ggcgagcgccgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttctt 754
||||||||| |||||||| | |||| |||||||| | ||||| | ||| ||||| |||||
Sbjct: 503 ggcgagcgcggtggcgagcacggagcagccggtgaacacgcccacctcgatggtgttctt 444
Query: 755 ggcgcc 760
||||||
Sbjct: 443 ggcgcc 438
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctg 298
||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 938 gcggcggcagagggtgatgccgtcggagaccgggagctg 900
>gb|AU101378.1|AU101378 AU101378 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20733, mRNA sequence
Length = 338
Score = 159 bits (80), Expect = 4e-036
Identities = 112/120 (93%), Gaps = 2/120 (1%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 133 tcacttgacgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcgac 74
Query: 311 gcggtcgtcggcggcgagcgccttg-ttgaggacgagcac-gaagtcgcggtagaagcgg 368
||||| |||||||||||| |||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 73 gcggtggtcggcggcgagggccttgtttgagctcgagcacggaagtcgcggtagtagcgg 14
>dbj|AK108479.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F02, full
insert sequence
Length = 959
Score = 131 bits (66), Expect = 9e-028
Identities = 174/210 (82%)
Strand = Plus / Minus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
||||||||||||||||||| ||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 647 ccacagcgtgttgtcgtaggcgatgaggccgccgaccctgaccagctgcagcagccgctc 588
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtg 535
||||||| |||| |||| ||||||| ||||||||||| ||||||||||| ||| |
Sbjct: 587 gtggtagccgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaacctcccctt 528
Query: 536 gttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtc 595
|||| |||||| |||| ||| |||||||| || || | ||| | || ||||||||||
Sbjct: 527 gttcccctcctcggcgacgagctcgtcgagcaccggcatggcgaggccgacgcggaagtc 468
Query: 596 gatcttgtgggcgacgccggccttctcgat 625
|| |||||| || ||||||||||| |||||
Sbjct: 467 gaccttgtgcgccacgccggccttgtcgat 438
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 258 acgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcg 317
|||||||||||||| ||||||||||| ||| || ||||||||| || ||||||| |
Sbjct: 817 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttgacgcggcgg 758
Query: 318 tcggcggcgagcgcc 332
|||||||||| ||||
Sbjct: 757 tcggcggcgatcgcc 743
>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0026F07
Length = 137354
Score = 127 bits (64), Expect = 1e-026
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 549 gcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcg 608
|||| ||||| |||||||| ||| | |||| |||||||||||||||| ||||||||||
Sbjct: 94907 gcgaggaggttgtcgaggatgggcatggcggcgccctcgcggaagtcgaccttgtgggcg 94966
Query: 609 acgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatg 668
||||||||||||| |||| ||| ||||| || ||| ||| ||| ||| ||| ||| |||
Sbjct: 94967 acgccggccttcttgatgacggggaggccgaggtcgaagtactcccggctgacgtcgatg 95026
Query: 669 gccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtg 728
|| | || | ||||||| ||||||| ||||||||| |||||||| | |||| ||||||||
Sbjct: 95027 gcgacgaccttgccgtcgtccgggatggcgagcgcggtggcgagcacggagcagccggtg 95086
Query: 729 tagacgccgatctccatggtcttcttggcgcc 760
| ||||| | ||| ||||| |||||||||||
Sbjct: 95087 aacacgcccacctcgatggtgttcttggcgcc 95118
Score = 89.7 bits (45), Expect = 3e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||| ||||||||| || |||||||||||| ||||||||||| |||| ||||||
Sbjct: 98924 tcacttgaggcggcggcacagcgtgacgccgtcggcgacggggagcaggcatgcctcgac 98983
Query: 311 gcggtcgtcggcggcga 327
|||||||||||||||||
Sbjct: 98984 gcggtcgtcggcggcga 99000
Score = 83.8 bits (42), Expect = 2e-013
Identities = 146/178 (82%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 587 gcggaagtcgatcttgtgggcgacgccggccttctcgatg-cagggcaggcccagctcgt 645
||||||||||| |||||| ||||||||||| | |||||| | |||| | ||||||||||
Sbjct: 99257 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggc-gccccagctcgt 99315
Query: 646 agttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccg 705
||| ||| ||| | | ||| ||||||| | | ||||||| || |||||||| ||||| |
Sbjct: 99316 agtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcgcgg 99375
Query: 706 tggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgccgat 763
||||||| || |||||||||||| ||||||||| ||| | || ||| ||||||||||
Sbjct: 99376 tggcgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgccgat 99433
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
|||||||||||||||||| ||||| | ||||| | |||||||| ||||||| ||||
Sbjct: 88056 ccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgctc 88115
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacg 528
|||||| |||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 88116 gtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaacg 88168
Score = 65.9 bits (33), Expect = 4e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 455 caccagcttcagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaa 514
||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||
Sbjct: 94729 caccagccgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaa 94788
Query: 515 gacgaagtcgaac 527
|||||||||||
Sbjct: 94789 cgcgaagtcgaac 94801
Score = 52.0 bits (26), Expect = 7e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcgtc 319
||||||||||| ||||| ||||||| ||| || ||||||||||| |||| ||| |||
Sbjct: 87900 gcggcggcagatggtgatgccgtcggcgatggcgagctggcagacgtcgatgcgcgggtc 87959
Query: 320 ggcggcgagc 329
||||||||||
Sbjct: 87960 ggcggcgagc 87969
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctg 298
||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 94534 gcggcggcagagggtgatgccgtcggagaccgggagctg 94572
>gb|AACV01018795.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018795, whole
genome shotgun sequence
Length = 16642
Score = 127 bits (64), Expect = 1e-026
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 549 gcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcg 608
|||| ||||| |||||||| ||| | |||| |||||||||||||||| ||||||||||
Sbjct: 9260 gcgaggaggttgtcgaggatgggcatggcggcgccctcgcggaagtcgaccttgtgggcg 9319
Query: 609 acgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatg 668
||||||||||||| |||| ||| ||||| || ||| ||| ||| ||| ||| ||| |||
Sbjct: 9320 acgccggccttcttgatgacggggaggccgaggtcgaagtactcccggctgacgtcgatg 9379
Query: 669 gccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtg 728
|| | || | ||||||| ||||||| ||||||||| |||||||| | |||| ||||||||
Sbjct: 9380 gcgacgaccttgccgtcgtccgggatggcgagcgcggtggcgagcacggagcagccggtg 9439
Query: 729 tagacgccgatctccatggtcttcttggcgcc 760
| ||||| | ||| ||||| |||||||||||
Sbjct: 9440 aacacgcccacctcgatggtgttcttggcgcc 9471
Score = 89.7 bits (45), Expect = 3e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||| ||||||||| || |||||||||||| ||||||||||| |||| ||||||
Sbjct: 13277 tcacttgaggcggcggcacagcgtgacgccgtcggcgacggggagcaggcatgcctcgac 13336
Query: 311 gcggtcgtcggcggcga 327
|||||||||||||||||
Sbjct: 13337 gcggtcgtcggcggcga 13353
Score = 83.8 bits (42), Expect = 2e-013
Identities = 146/178 (82%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 587 gcggaagtcgatcttgtgggcgacgccggccttctcgatg-cagggcaggcccagctcgt 645
||||||||||| |||||| ||||||||||| | |||||| | |||| | ||||||||||
Sbjct: 13611 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggc-gccccagctcgt 13669
Query: 646 agttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccg 705
||| ||| ||| | | ||| ||||||| | | ||||||| || |||||||| ||||| |
Sbjct: 13670 agtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcgcgg 13729
Query: 706 tggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgccgat 763
||||||| || |||||||||||| ||||||||| ||| | || ||| ||||||||||
Sbjct: 13730 tggcgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgccgat 13787
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
|||||||||||||||||| ||||| | ||||| | |||||||| ||||||| ||||
Sbjct: 2405 ccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgctc 2464
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacg 528
|||||| |||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 2465 gtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaacg 2517
Score = 65.9 bits (33), Expect = 4e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 455 caccagcttcagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaa 514
||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||
Sbjct: 9082 caccagccgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaa 9141
Query: 515 gacgaagtcgaac 527
|||||||||||
Sbjct: 9142 cgcgaagtcgaac 9154
Score = 52.0 bits (26), Expect = 7e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcgtc 319
||||||||||| ||||| ||||||| ||| || ||||||||||| |||| ||| |||
Sbjct: 2249 gcggcggcagatggtgatgccgtcggcgatggcgagctggcagacgtcgatgcgcgggtc 2308
Query: 320 ggcggcgagc 329
||||||||||
Sbjct: 2309 ggcggcgagc 2318
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctg 298
||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 8887 gcggcggcagagggtgatgccgtcggagaccgggagctg 8925
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 127 bits (64), Expect = 1e-026
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 549 gcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcg 608
|||| ||||| |||||||| ||| | |||| |||||||||||||||| ||||||||||
Sbjct: 24348560 gcgaggaggttgtcgaggatgggcatggcggcgccctcgcggaagtcgaccttgtgggcg 24348619
Query: 609 acgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatg 668
||||||||||||| |||| ||| ||||| || ||| ||| ||| ||| ||| ||| |||
Sbjct: 24348620 acgccggccttcttgatgacggggaggccgaggtcgaagtactcccggctgacgtcgatg 24348679
Query: 669 gccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtg 728
|| | || | ||||||| ||||||| ||||||||| |||||||| | |||| ||||||||
Sbjct: 24348680 gcgacgaccttgccgtcgtccgggatggcgagcgcggtggcgagcacggagcagccggtg 24348739
Query: 729 tagacgccgatctccatggtcttcttggcgcc 760
| ||||| | ||| ||||| |||||||||||
Sbjct: 24348740 aacacgcccacctcgatggtgttcttggcgcc 24348771
Score = 89.7 bits (45), Expect = 3e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||| ||||||||| || |||||||||||| ||||||||||| |||| ||||||
Sbjct: 24352577 tcacttgaggcggcggcacagcgtgacgccgtcggcgacggggagcaggcatgcctcgac 24352636
Query: 311 gcggtcgtcggcggcga 327
|||||||||||||||||
Sbjct: 24352637 gcggtcgtcggcggcga 24352653
Score = 83.8 bits (42), Expect = 2e-013
Identities = 146/178 (82%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 587 gcggaagtcgatcttgtgggcgacgccggccttctcgatg-cagggcaggcccagctcgt 645
||||||||||| |||||| ||||||||||| | |||||| | |||| | ||||||||||
Sbjct: 24352910 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggc-gccccagctcgt 24352968
Query: 646 agttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccg 705
||| ||| ||| | | ||| ||||||| | | ||||||| || |||||||| ||||| |
Sbjct: 24352969 agtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcgcgg 24353028
Query: 706 tggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgccgat 763
||||||| || |||||||||||| ||||||||| ||| | || ||| ||||||||||
Sbjct: 24353029 tggcgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgccgat 24353086
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
|||||||||||||||||| ||||| | ||||| | |||||||| ||||||| ||||
Sbjct: 24341709 ccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgctc 24341768
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacg 528
|||||| |||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 24341769 gtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaacg 24341821
Score = 65.9 bits (33), Expect = 4e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 455 caccagcttcagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaa 514
||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||
Sbjct: 24348382 caccagccgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaa 24348441
Query: 515 gacgaagtcgaac 527
|||||||||||
Sbjct: 24348442 cgcgaagtcgaac 24348454
Score = 52.0 bits (26), Expect = 7e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcgtc 319
||||||||||| ||||| ||||||| ||| || ||||||||||| |||| ||| |||
Sbjct: 24341553 gcggcggcagatggtgatgccgtcggcgatggcgagctggcagacgtcgatgcgcgggtc 24341612
Query: 320 ggcggcgagc 329
||||||||||
Sbjct: 24341613 ggcggcgagc 24341622
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctg 298
||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 24348187 gcggcggcagagggtgatgccgtcggagaccgggagctg 24348225
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 127 bits (64), Expect = 1e-026
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 549 gcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcg 608
|||| ||||| |||||||| ||| | |||| |||||||||||||||| ||||||||||
Sbjct: 15832894 gcgaggaggttgtcgaggatgggcatggcggcgccctcgcggaagtcgaccttgtgggcg 15832953
Query: 609 acgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatg 668
||||||||||||| |||| ||| ||||| || ||| ||| ||| ||| ||| ||| |||
Sbjct: 15832954 acgccggccttcttgatgacggggaggccgaggtcgaagtactcccggctgacgtcgatg 15833013
Query: 669 gccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtg 728
|| | || | ||||||| ||||||| ||||||||| |||||||| | |||| ||||||||
Sbjct: 15833014 gcgacgaccttgccgtcgtccgggatggcgagcgcggtggcgagcacggagcagccggtg 15833073
Query: 729 tagacgccgatctccatggtcttcttggcgcc 760
| ||||| | ||| ||||| |||||||||||
Sbjct: 15833074 aacacgcccacctcgatggtgttcttggcgcc 15833105
Score = 89.7 bits (45), Expect = 3e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||| ||||||||| || |||||||||||| ||||||||||| |||| ||||||
Sbjct: 15836911 tcacttgaggcggcggcacagcgtgacgccgtcggcgacggggagcaggcatgcctcgac 15836970
Query: 311 gcggtcgtcggcggcga 327
|||||||||||||||||
Sbjct: 15836971 gcggtcgtcggcggcga 15836987
Score = 83.8 bits (42), Expect = 2e-013
Identities = 146/178 (82%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 587 gcggaagtcgatcttgtgggcgacgccggccttctcgatg-cagggcaggcccagctcgt 645
||||||||||| |||||| ||||||||||| | |||||| | |||| | ||||||||||
Sbjct: 15837245 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggc-gccccagctcgt 15837303
Query: 646 agttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccg 705
||| ||| ||| | | ||| ||||||| | | ||||||| || |||||||| ||||| |
Sbjct: 15837304 agtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcgcgg 15837363
Query: 706 tggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgccgat 763
||||||| || |||||||||||| ||||||||| ||| | || ||| ||||||||||
Sbjct: 15837364 tggcgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgccgat 15837421
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
|||||||||||||||||| ||||| | ||||| | |||||||| ||||||| ||||
Sbjct: 15826039 ccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgctc 15826098
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacg 528
|||||| |||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 15826099 gtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaacg 15826151
Score = 65.9 bits (33), Expect = 4e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 455 caccagcttcagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaa 514
||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||
Sbjct: 15832716 caccagccgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaa 15832775
Query: 515 gacgaagtcgaac 527
|||||||||||
Sbjct: 15832776 cgcgaagtcgaac 15832788
Score = 52.0 bits (26), Expect = 7e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcgtc 319
||||||||||| ||||| ||||||| ||| || ||||||||||| |||| ||| |||
Sbjct: 15825883 gcggcggcagatggtgatgccgtcggcgatggcgagctggcagacgtcgatgcgcgggtc 15825942
Query: 320 ggcggcgagc 329
||||||||||
Sbjct: 15825943 ggcggcgagc 15825952
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctg 298
||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 15832521 gcggcggcagagggtgatgccgtcggagaccgggagctg 15832559
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 127 bits (64), Expect = 1e-026
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 549 gcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcg 608
|||| ||||| |||||||| ||| | |||| |||||||||||||||| ||||||||||
Sbjct: 23434900 gcgaggaggttgtcgaggatgggcatggcggcgccctcgcggaagtcgaccttgtgggcg 23434959
Query: 609 acgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatg 668
||||||||||||| |||| ||| ||||| || ||| ||| ||| ||| ||| ||| |||
Sbjct: 23434960 acgccggccttcttgatgacggggaggccgaggtcgaagtactcccggctgacgtcgatg 23435019
Query: 669 gccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtg 728
|| | || | ||||||| ||||||| ||||||||| |||||||| | |||| ||||||||
Sbjct: 23435020 gcgacgaccttgccgtcgtccgggatggcgagcgcggtggcgagcacggagcagccggtg 23435079
Query: 729 tagacgccgatctccatggtcttcttggcgcc 760
| ||||| | ||| ||||| |||||||||||
Sbjct: 23435080 aacacgcccacctcgatggtgttcttggcgcc 23435111
Score = 89.7 bits (45), Expect = 3e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||| ||||||||| || |||||||||||| ||||||||||| |||| ||||||
Sbjct: 23438917 tcacttgaggcggcggcacagcgtgacgccgtcggcgacggggagcaggcatgcctcgac 23438976
Query: 311 gcggtcgtcggcggcga 327
|||||||||||||||||
Sbjct: 23438977 gcggtcgtcggcggcga 23438993
Score = 83.8 bits (42), Expect = 2e-013
Identities = 146/178 (82%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 587 gcggaagtcgatcttgtgggcgacgccggccttctcgatg-cagggcaggcccagctcgt 645
||||||||||| |||||| ||||||||||| | |||||| | |||| | ||||||||||
Sbjct: 23439251 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggc-gccccagctcgt 23439309
Query: 646 agttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccg 705
||| ||| ||| | | ||| ||||||| | | ||||||| || |||||||| ||||| |
Sbjct: 23439310 agtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcgcgg 23439369
Query: 706 tggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgccgat 763
||||||| || |||||||||||| ||||||||| ||| | || ||| ||||||||||
Sbjct: 23439370 tggcgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgccgat 23439427
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
|||||||||||||||||| ||||| | ||||| | |||||||| ||||||| ||||
Sbjct: 23428045 ccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgctc 23428104
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacg 528
|||||| |||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 23428105 gtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaacg 23428157
Score = 65.9 bits (33), Expect = 4e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 455 caccagcttcagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaa 514
||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||
Sbjct: 23434722 caccagccgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaa 23434781
Query: 515 gacgaagtcgaac 527
|||||||||||
Sbjct: 23434782 cgcgaagtcgaac 23434794
Score = 52.0 bits (26), Expect = 7e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcgtc 319
||||||||||| ||||| ||||||| ||| || ||||||||||| |||| ||| |||
Sbjct: 23427889 gcggcggcagatggtgatgccgtcggcgatggcgagctggcagacgtcgatgcgcgggtc 23427948
Query: 320 ggcggcgagc 329
||||||||||
Sbjct: 23427949 ggcggcgagc 23427958
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctg 298
||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 23434527 gcggcggcagagggtgatgccgtcggagaccgggagctg 23434565
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 127 bits (64), Expect = 1e-026
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 549 gcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcg 608
|||| ||||| |||||||| ||| | |||| |||||||||||||||| ||||||||||
Sbjct: 24586647 gcgaggaggttgtcgaggatgggcatggcggcgccctcgcggaagtcgaccttgtgggcg 24586706
Query: 609 acgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatg 668
||||||||||||| |||| ||| ||||| || ||| ||| ||| ||| ||| ||| |||
Sbjct: 24586707 acgccggccttcttgatgacggggaggccgaggtcgaagtactcccggctgacgtcgatg 24586766
Query: 669 gccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtg 728
|| | || | ||||||| ||||||| ||||||||| |||||||| | |||| ||||||||
Sbjct: 24586767 gcgacgaccttgccgtcgtccgggatggcgagcgcggtggcgagcacggagcagccggtg 24586826
Query: 729 tagacgccgatctccatggtcttcttggcgcc 760
| ||||| | ||| ||||| |||||||||||
Sbjct: 24586827 aacacgcccacctcgatggtgttcttggcgcc 24586858
Score = 89.7 bits (45), Expect = 3e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||| ||||||||| || |||||||||||| ||||||||||| |||| ||||||
Sbjct: 24590664 tcacttgaggcggcggcacagcgtgacgccgtcggcgacggggagcaggcatgcctcgac 24590723
Query: 311 gcggtcgtcggcggcga 327
|||||||||||||||||
Sbjct: 24590724 gcggtcgtcggcggcga 24590740
Score = 83.8 bits (42), Expect = 2e-013
Identities = 146/178 (82%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 587 gcggaagtcgatcttgtgggcgacgccggccttctcgatg-cagggcaggcccagctcgt 645
||||||||||| |||||| ||||||||||| | |||||| | |||| | ||||||||||
Sbjct: 24590997 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggc-gccccagctcgt 24591055
Query: 646 agttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccg 705
||| ||| ||| | | ||| ||||||| | | ||||||| || |||||||| ||||| |
Sbjct: 24591056 agtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcgcgg 24591115
Query: 706 tggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgccgat 763
||||||| || |||||||||||| ||||||||| ||| | || ||| ||||||||||
Sbjct: 24591116 tggcgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgccgat 24591173
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
|||||||||||||||||| ||||| | ||||| | |||||||| ||||||| ||||
Sbjct: 24579796 ccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgctc 24579855
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacg 528
|||||| |||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 24579856 gtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaacg 24579908
Score = 65.9 bits (33), Expect = 4e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 455 caccagcttcagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaa 514
||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||
Sbjct: 24586469 caccagccgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaa 24586528
Query: 515 gacgaagtcgaac 527
|||||||||||
Sbjct: 24586529 cgcgaagtcgaac 24586541
Score = 52.0 bits (26), Expect = 7e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcgtc 319
||||||||||| ||||| ||||||| ||| || ||||||||||| |||| ||| |||
Sbjct: 24579640 gcggcggcagatggtgatgccgtcggcgatggcgagctggcagacgtcgatgcgcgggtc 24579699
Query: 320 ggcggcgagc 329
||||||||||
Sbjct: 24579700 ggcggcgagc 24579709
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctg 298
||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 24586274 gcggcggcagagggtgatgccgtcggagaccgggagctg 24586312
>gb|AU070794.1|AU070794 AU070794 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10255_1A, mRNA sequence
Length = 261
Score = 111 bits (56), Expect = 8e-022
Identities = 169/210 (80%)
Strand = Plus / Minus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
||||||||||||||||||| |||||||| ||| | | | ||||||| |||||||||||
Sbjct: 256 ccacagcgtgttgtcgtaggngatgaggcngccgaccctgaccagctgcagcagccgctn 197
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtg 535
||||||| |||| |||| ||||||| | ||||||||| ||||||||||| ||| |
Sbjct: 196 gtggtagccgaggaagttcaccttgtccgngtccacgaacgcgaagtcgaacntcccntt 137
Query: 536 gttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtc 595
|||| |||||| |||| ||| |||||||| || || | ||| | || ||||||||||
Sbjct: 136 gttcccctcctcggcgacgagctcgtcgagnaccggnatggcgaggccgacgcggaagtc 77
Query: 596 gatcttgtgggcgacgccggccttctcgat 625
|| ||||| || ||||||||||| |||||
Sbjct: 76 gacnttgtgcgcnacgccggccttgtcgat 47
>gb|AACV01020268.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020268, whole
genome shotgun sequence
Length = 5761
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
||||||||||||||||||| ||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 3848 ccacagcgtgttgtcgtaggcgatgaggccgccgaccctgaccagctgcagcagccgctc 3789
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 527
||||||| |||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 3788 gtggtagccgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 3737
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 258 acgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcg 317
|||||||||||||| ||||||||||| ||| || ||||||||| || ||||||| |
Sbjct: 4018 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttgacgcggcgg 3959
Query: 318 tcggcggcgagcgcc 332
|||||||||| ||||
Sbjct: 3958 tcggcggcgatcgcc 3944
Score = 48.1 bits (24), Expect = 0.010
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 586 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 625
|||||||||||| |||||| || ||||||||||| |||||
Sbjct: 3598 cgcggaagtcgaccttgtgcgccacgccggccttgtcgat 3559
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
||||||||||||||||||| ||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 4112497 ccacagcgtgttgtcgtaggcgatgaggccgccgaccctgaccagctgcagcagccgctc 4112556
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 527
||||||| |||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 4112557 gtggtagccgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 4112608
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 258 acgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcg 317
|||||||||||||| ||||||||||| ||| || ||||||||| || ||||||| |
Sbjct: 4112327 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttgacgcggcgg 4112386
Query: 318 tcggcggcgagcgcc 332
|||||||||| ||||
Sbjct: 4112387 tcggcggcgatcgcc 4112401
Score = 48.1 bits (24), Expect = 0.010
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 586 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 625
|||||||||||| |||||| || ||||||||||| |||||
Sbjct: 4112747 cgcggaagtcgaccttgtgcgccacgccggccttgtcgat 4112786
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0463D04
Length = 145828
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
||||||||||||||||||| ||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 82568 ccacagcgtgttgtcgtaggcgatgaggccgccgaccctgaccagctgcagcagccgctc 82627
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 527
||||||| |||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 82628 gtggtagccgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 82679
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 258 acgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcg 317
|||||||||||||| ||||||||||| ||| || ||||||||| || ||||||| |
Sbjct: 82398 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttgacgcggcgg 82457
Query: 318 tcggcggcgagcgcc 332
|||||||||| ||||
Sbjct: 82458 tcggcggcgatcgcc 82472
Score = 48.1 bits (24), Expect = 0.010
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 586 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 625
|||||||||||| |||||| || ||||||||||| |||||
Sbjct: 82818 cgcggaagtcgaccttgtgcgccacgccggccttgtcgat 82857
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0463G11
Length = 154188
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
||||||||||||||||||| ||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 135430 ccacagcgtgttgtcgtaggcgatgaggccgccgaccctgaccagctgcagcagccgctc 135489
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 527
||||||| |||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 135490 gtggtagccgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 135541
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 258 acgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcg 317
|||||||||||||| ||||||||||| ||| || ||||||||| || ||||||| |
Sbjct: 135260 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttgacgcggcgg 135319
Query: 318 tcggcggcgagcgcc 332
|||||||||| ||||
Sbjct: 135320 tcggcggcgatcgcc 135334
Score = 48.1 bits (24), Expect = 0.010
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 586 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 625
|||||||||||| |||||| || ||||||||||| |||||
Sbjct: 135680 cgcggaagtcgaccttgtgcgccacgccggccttgtcgat 135719
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
||||||||||||||||||| ||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 7719634 ccacagcgtgttgtcgtaggcgatgaggccgccgaccctgaccagctgcagcagccgctc 7719693
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 527
||||||| |||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 7719694 gtggtagccgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 7719745
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 258 acgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcg 317
|||||||||||||| ||||||||||| ||| || ||||||||| || ||||||| |
Sbjct: 7719464 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttgacgcggcgg 7719523
Query: 318 tcggcggcgagcgcc 332
|||||||||| ||||
Sbjct: 7719524 tcggcggcgatcgcc 7719538
Score = 48.1 bits (24), Expect = 0.010
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 586 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 625
|||||||||||| |||||| || ||||||||||| |||||
Sbjct: 7719884 cgcggaagtcgaccttgtgcgccacgccggccttgtcgat 7719923
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
||||||||||||||||||| ||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 17193445 ccacagcgtgttgtcgtaggcgatgaggccgccgaccctgaccagctgcagcagccgctc 17193504
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 527
||||||| |||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 17193505 gtggtagccgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 17193556
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 258 acgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcg 317
|||||||||||||| ||||||||||| ||| || ||||||||| || ||||||| |
Sbjct: 17193275 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttgacgcggcgg 17193334
Query: 318 tcggcggcgagcgcc 332
|||||||||| ||||
Sbjct: 17193335 tcggcggcgatcgcc 17193349
Score = 48.1 bits (24), Expect = 0.010
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 586 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 625
|||||||||||| |||||| || ||||||||||| |||||
Sbjct: 17193695 cgcggaagtcgaccttgtgcgccacgccggccttgtcgat 17193734
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
||||||||||||||||||| ||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 18420694 ccacagcgtgttgtcgtaggcgatgaggccgccgaccctgaccagctgcagcagccgctc 18420753
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 527
||||||| |||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 18420754 gtggtagccgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 18420805
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 258 acgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcg 317
|||||||||||||| ||||||||||| ||| || ||||||||| || ||||||| |
Sbjct: 18420524 acgcggcggcagagcatgacgccgtcggcgatggcgagctggcacggcttgacgcggcgg 18420583
Query: 318 tcggcggcgagcgcc 332
|||||||||| ||||
Sbjct: 18420584 tcggcggcgatcgcc 18420598
Score = 48.1 bits (24), Expect = 0.010
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 586 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 625
|||||||||||| |||||| || ||||||||||| |||||
Sbjct: 18420944 cgcggaagtcgaccttgtgcgccacgccggccttgtcgat 18420983
>gb|CO435814.1|CO435814 OsMR880 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 845
Score = 107 bits (54), Expect = 1e-020
Identities = 137/165 (83%)
Strand = Plus / Minus
Query: 455 caccagcttcagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaa 514
||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||
Sbjct: 282 caccagccgcagcagccgctcgtggtactcgccgtagttccccttgtcggcgtccacgaa 223
Query: 515 gacgaagtcgaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggag 574
||||||||||| ||| | ||||| ||| | |||| ||||| |||||||| ||| |
Sbjct: 222 cgcgaagtcgaacttcccctcgttctcctcgttggcgaggaggttgtcgaggatgggcat 163
Query: 575 cgcgggaccctcgcggaagtcgatcttgtgggcgacgccggcctt 619
|||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 162 ggcggcgccctcgcggaagtcgaccttgtgggngacgccggcctt 118
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctg 298
||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 477 gcggcggcagagggtgatgccgtcggagaccgggagctg 439
>dbj|AK106735.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-A04, full
insert sequence
Length = 1895
Score = 89.7 bits (45), Expect = 3e-015
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||| ||||||||| || |||||||||||| ||||||||||| |||| ||||||
Sbjct: 1680 tcacttgaggcggcggcacagcgtgacgccgtcggcgacggggagcaggcatgcctcgac 1621
Query: 311 gcggtcgtcggcggcga 327
|||||||||||||||||
Sbjct: 1620 gcggtcgtcggcggcga 1604
Score = 83.8 bits (42), Expect = 2e-013
Identities = 146/178 (82%), Gaps = 2/178 (1%)
Strand = Plus / Minus
Query: 587 gcggaagtcgatcttgtgggcgacgccggccttctcgatg-cagggcaggcccagctcgt 645
||||||||||| |||||| ||||||||||| | |||||| | |||| | ||||||||||
Sbjct: 1347 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggc-gccccagctcgt 1289
Query: 646 agttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccg 705
||| ||| ||| | | ||| ||||||| | | ||||||| || |||||||| ||||| |
Sbjct: 1288 agtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcgcgg 1229
Query: 706 tggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgccgat 763
||||||| || |||||||||||| ||||||||| ||| | || ||| ||||||||||
Sbjct: 1228 tggcgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgccgat 1171
>gb|AY644638.1| Oryza sativa (japonica cultivar-group) caffeoyl-CoA
O-methyltransferase (COA26) gene, complete cds
Length = 1116
Score = 89.7 bits (45), Expect = 3e-015
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 251 tcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgac 310
|||||||| ||||||||| || |||||||||||| ||||||||||| |||| ||||||
Sbjct: 1016 tcacttgaggcggcggcacagcgtgacgccgtcggcgacggggagcaggcatgcctcgac 957
Query: 311 gcggtcgtcggcggcga 327
|||||||||||||||||
Sbjct: 956 gcggtcgtcggcggcga 940
Score = 83.8 bits (42), Expect = 2e-013
Identities = 146/178 (82%), Gaps = 2/178 (1%)
Strand = Plus / Minus
Query: 587 gcggaagtcgatcttgtgggcgacgccggccttctcgatg-cagggcaggcccagctcgt 645
||||||||||| |||||| ||||||||||| | |||||| | |||| | ||||||||||
Sbjct: 683 gcggaagtcgaccttgtgcgcgacgccggcgtcctcgatcaccgggc-gccccagctcgt 625
Query: 646 agttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccg 705
||| ||| ||| | | ||| ||||||| | | ||||||| || |||||||| ||||| |
Sbjct: 624 agtactcccggctcacgtcgatggccaccaccttgccgtcgtcggggagggccagcgcgg 565
Query: 706 tggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgccgat 763
||||||| || |||||||||||| ||||||||| ||| | || ||| ||||||||||
Sbjct: 564 tggcgagcagcgagtagccggtgaagacgccgacctcgacggcgttcctggcgccgat 507
>gb|AU101479.1|AU101479 AU101479 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50819, mRNA sequence
Length = 614
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
|||||||||||||||||| ||||| | ||||| | |||||||| ||||||| ||||
Sbjct: 267 ccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgctc 208
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacg 528
|||||| |||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 207 gtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaacg 155
Score = 52.0 bits (26), Expect = 7e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcgtc 319
||||||||||| ||||| ||||||| ||| || ||||||||||| |||| ||| |||
Sbjct: 423 gcggcggcagatggtgatgccgtcggcgatggcgagctggcagacgtcgatgcgcgggtc 364
Query: 320 ggcggcgagc 329
||||||||||
Sbjct: 363 ggcggcgagc 354
>gb|AU164542.1|AU164542 AU164542 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0434, mRNA sequence
Length = 671
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
|||||||||||||||||| ||||| | ||||| | |||||||| ||||||| ||||
Sbjct: 300 ccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgctc 241
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacg 528
|||||| |||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 240 gtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaacg 188
Score = 52.0 bits (26), Expect = 7e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 260 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcgtc 319
||||||||||| ||||| ||||||| ||| || ||||||||||| |||| ||| |||
Sbjct: 456 gcggcggcagatggtgatgccgtcggcgatggcgagctggcagacgtcgatgcgcgggtc 397
Query: 320 ggcggcgagc 329
||||||||||
Sbjct: 396 ggcggcgagc 387
>gb|CA755835.1|CA755835 BR030029000_PLATE_D01_4_012.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030029000_PLATE_D01_4_012.ab1 similar to ESTs
AU030740(E60171),AU030739(E60171) correspond to a region
of the predicted gene.Similar to Populus tremuloides
caffeoyl-CoA 3-O-methyltransferase. (U27116) [Oryza
sativa (japonica cultivar-group)], mRNA sequence
Length = 877
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
|||||||||||||||||| ||||| | ||||| | |||||||| ||||||| ||||
Sbjct: 740 ccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgctc 681
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacg 528
|||||| |||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 680 gtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaacg 628
Score = 48.1 bits (24), Expect = 0.010
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 857 catgctctccggctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtc 916
||||| |||||||||||| || ||| |||||||||||| |||| ||| ||| ||||
Sbjct: 202 catgcactccggctcccgtggcagcaccgtcgtgtccaggacatacttgtacagggcgtc 143
Query: 917 gctcttgagcag 928
||||||||||||
Sbjct: 142 gctcttgagcag 131
>gb|CB650397.1|CB650397 OSJNEb14N03.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14N03 5', mRNA sequence
Length = 756
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 416 ccacagcgtgttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctc 475
|||||||||||||||||| ||||| | ||||| | |||||||| ||||||| ||||
Sbjct: 658 ccacagcgtgttgtcgtacacgatgtgcccgccgacgcgcaccagctgcagcagctgctc 599
Query: 476 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacg 528
|||||| |||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 598 gtggtacttgacgtagttgggcttgtccgcgtccacgaacgcgaagtcgaacg 546
Score = 48.1 bits (24), Expect = 0.010
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 857 catgctctccggctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtc 916
||||| |||||||||||| || ||| |||||||||||| |||| ||| ||| ||||
Sbjct: 208 catgcactccggctcccgtggcagcaccgtcgtgtccaggacatacttgtacagggcgtc 149
Query: 917 gctcttgagcag 928
||||||||||||
Sbjct: 148 gctcttgagcag 137
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,254,810
Number of Sequences: 438736
Number of extensions: 2254810
Number of successful extensions: 28807
Number of sequences better than 0.5: 147
Number of HSP's better than 0.5 without gapping: 146
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27538
Number of HSP's gapped (non-prelim): 1227
length of query: 1115
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1094
effective length of database: 2,791,206,460
effective search space: 3053579867240
effective search space used: 3053579867240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)