BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448387.2.1
(919 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_471766.1| Oryza sativa (japonica cultivar-group), p... 454 e-125
gb|AACV01009260.1| Oryza sativa (japonica cultivar-group) c... 287 5e-075
ref|NT_079856.2| Oryza sativa (japonica cultivar-group) 287 5e-075
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 287 5e-075
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 287 5e-075
emb|AL662942.4|OSJN00135 Oryza sativa genomic DNA, chromoso... 287 5e-075
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 287 5e-075
gb|AQ259091.1|AQ259091 nbxb0022K01r CUGI Rice BAC Library O... 165 5e-038
dbj|AK120964.1| Oryza sativa (japonica cultivar-group) cDNA... 137 1e-029
dbj|AP004558.3| Oryza sativa (japonica cultivar-group) geno... 137 1e-029
dbj|AP004665.4| Oryza sativa (japonica cultivar-group) geno... 137 1e-029
gb|AACV01018590.1| Oryza sativa (japonica cultivar-group) c... 137 1e-029
ref|XM_482683.1| Oryza sativa (japonica cultivar-group), mRNA 137 1e-029
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 137 1e-029
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 137 1e-029
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 137 1e-029
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 137 1e-029
gb|AQ863344.1|AQ863344 nbeb0020D16r CUGI Rice BAC Library (... 131 7e-028
gb|AU311991.1|AU311991 AU311991 Oryza sativa anther cDNA Or... 131 7e-028
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 107 1e-020
ref|NM_188655.1| Oryza sativa (japonica cultivar-group), Oz... 107 1e-020
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 107 1e-020
dbj|AP001539.1| Oryza sativa (japonica cultivar-group) geno... 107 1e-020
dbj|AP002481.1| Oryza sativa (japonica cultivar-group) geno... 107 1e-020
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 107 1e-020
dbj|AK105636.1| Oryza sativa (japonica cultivar-group) cDNA... 103 2e-019
ref|XM_467290.1| Oryza sativa (japonica cultivar-group), mRNA 103 2e-019
dbj|AK069932.1| Oryza sativa (japonica cultivar-group) cDNA... 101 7e-019
gb|AACV01017731.1| Oryza sativa (japonica cultivar-group) c... 101 7e-019
ref|XM_480952.1| Oryza sativa (japonica cultivar-group), mRNA 101 7e-019
dbj|AP003859.2| Oryza sativa (japonica cultivar-group) geno... 101 7e-019
emb|X52623.1|OS4CL Rice 4-CL gene for 4-coumarate-CoA ligas... 101 7e-019
gb|CF334787.1|CF334787 JMT--04-D08.g1 AtJMT-overexpressing ... 100 3e-018
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 98 1e-017
dbj|AP004778.3| Oryza sativa (japonica cultivar-group) geno... 98 1e-017
dbj|AP005868.3| Oryza sativa (japonica cultivar-group) geno... 98 1e-017
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 98 1e-017
gb|CF335205.1|CF335205 JMT--04-M19.g1 AtJMT-overexpressing ... 94 2e-016
gb|AACV01000529.1| Oryza sativa (japonica cultivar-group) c... 94 2e-016
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
gb|D41112.1|D41112 RICS3391A Rice shoot Oryza sativa (japon... 84 2e-013
gb|D47966.1|D47966 RICS13787A Rice green shoot Oryza sativa... 84 2e-013
gb|CB000351.1|CB000351 S345U_D03 Rice cold stress germinati... 84 2e-013
gb|CB653843.1|CB653843 OSJNEc05E03.r OSJNEc Oryza sativa (j... 84 2e-013
gb|CB654031.1|CB654031 OSJNEc05J16.r OSJNEc Oryza sativa (j... 84 2e-013
gb|CB655489.1|CB655489 OSJNEc08P15.r OSJNEc Oryza sativa (j... 84 2e-013
gb|CB676498.1|CB676498 OSJNEe12M15.r OSJNEe Oryza sativa (j... 84 2e-013
gb|CB684593.1|CB684593 OSJNEf14E12.f OSJNEf Oryza sativa (j... 84 2e-013
gb|CB684594.1|CB684594 OSJNEf14E12.r OSJNEf Oryza sativa (j... 84 2e-013
dbj|AP004115.1| Oryza sativa (japonica cultivar-group) chro... 84 2e-013
dbj|AK070083.1| Oryza sativa (japonica cultivar-group) cDNA... 84 2e-013
dbj|AP004838.3| Oryza sativa (japonica cultivar-group) geno... 84 2e-013
gb|AACV01003472.1| Oryza sativa (japonica cultivar-group) c... 84 2e-013
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 84 2e-013
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
gb|D41049.1|D41049 RICS3310A Rice shoot Oryza sativa (japon... 78 9e-012
gb|D41813.1|D41813 RICS4636A Rice shoot Oryza sativa (japon... 76 4e-011
gb|AQ865951.1|AQ865951 nbeb0026D18r CUGI Rice BAC Library (... 74 1e-010
gb|AU082675.1|AU082675 AU082675 Rice panicle at flowering s... 66 4e-008
gb|AU096471.1|AU096471 AU096471 Rice green shoot Oryza sati... 56 3e-005
dbj|AK107421.1| Oryza sativa (japonica cultivar-group) cDNA... 52 5e-004
gb|CF297013.1|CF297013 30DGS--07-K02.b1 Rice leaf plasmid c... 48 0.008
>ref|XM_471766.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1668
Score = 454 bits (229), Expect = e-125
Identities = 427/493 (86%)
Strand = Plus / Minus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 1648 tcttgatgaactcgtccctaagctgcctcctcaggatcttcccggacaccgacttgggga 1589
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||| |||| | |||||| ||||| | |||||||||||| || | | |||||||||
Sbjct: 1588 tggcgtcgacgatgtgcagcacccggacccgcttgtacgacgccaccctctccgccacgt 1529
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccg 605
|||||| || ||| |||| | |||| ||| || | |||||||||||||||| | |||
Sbjct: 1528 acgccactatctcctcctccccctcctccgcaccgtgccgccgcaccacgcacgccaccg 1469
Query: 606 ggacctcgccggcctcctcgtccggcagcccgaagacggcggcgtcctcgacggacgggt 665
| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct: 1468 gcacctcgccggcctcctcgtccggcaccccgaagacggcggcgtcctcaacggaggggt 1409
Query: 666 gagacagcaggatggcctccagctcggcaggggcgacctggaagcccttgtacttgatga 725
| || || |||| |||||| |||||||| ||||||||||| || |||||||||||||| |
Sbjct: 1408 gggagaggaggacggcctcgagctcggcgggggcgacctgaaaccccttgtacttgatca 1349
Query: 726 gctccttgatgcggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgc 785
|||||||||| | ||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 1348 gctccttgatcctgtccacgatgaacacgtcgccgtcgccgtcgatgtacccaacgtcgc 1289
Query: 786 ccgtgtggagccaccccgcggcgtcgatggtgcgctccgtctcctccttcctcctgtagt 845
| ||||| ||||||||| | |||| | |||||||||||||||||||||||| ||||||
Sbjct: 1288 cggtgtgcagccaccccttgccgtccaccgtgcgctccgtctcctccttcctcttgtagt 1229
Query: 846 agccctgcatcacggcctggctccgcacgcagatctcccccggcgggttcttgggcagcg 905
| |||||||||||| ||||||||||||||| | ||||||||||| |||| |||||||
Sbjct: 1228 acccctgcatcacgctctggctccgcacgcacagctcccccggcgtgttcgccggcagcg 1169
Query: 906 accgccccgtgtc 918
||| ||| |||||
Sbjct: 1168 acctcccggtgtc 1156
>gb|AACV01009260.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009260, whole
genome shotgun sequence
Length = 63390
Score = 287 bits (145), Expect = 5e-075
Identities = 250/285 (87%)
Strand = Plus / Minus
Query: 634 cccgaagacggcggcgtcctcgacggacgggtgagacagcaggatggcctccagctcggc 693
||||||||||||||||||||| ||||| ||||| || || |||| |||||| ||||||||
Sbjct: 32580 cccgaagacggcggcgtcctcaacggaggggtgggagaggaggacggcctcgagctcggc 32521
Query: 694 aggggcgacctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacac 753
||||||||||| || |||||||||||||| ||||||||||| | |||||||||||||||
Sbjct: 32520 gggggcgacctgaaaccccttgtacttgatcagctccttgatcctgtccacgatgaacac 32461
Query: 754 gtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccccgcggcgtcgat 813
|||||||||| ||||||||||||| |||||||| ||||| ||||||||| | |||| |
Sbjct: 32460 gtcgccgtcgccgtcgatgtacccaacgtcgccggtgtgcagccaccccttgccgtccac 32401
Query: 814 ggtgcgctccgtctcctccttcctcctgtagtagccctgcatcacggcctggctccgcac 873
|||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 32400 cgtgcgctccgtctcctccttcctcttgtagtacccctgcatcacgctctggctccgcac 32341
Query: 874 gcagatctcccccggcgggttcttgggcagcgaccgccccgtgtc 918
||| | ||||||||||| |||| |||||||||| ||| |||||
Sbjct: 32340 gcacagctcccccggcgtgttcgccggcagcgacctcccggtgtc 32296
Score = 172 bits (87), Expect = 2e-040
Identities = 177/207 (85%)
Strand = Plus / Minus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 33032 tcttgatgaactcgtccctaagctgcctcctcaggatcttcccggacaccgacttgggga 32973
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||| |||| | |||||| ||||| | |||||||||||| || | | |||||||||
Sbjct: 32972 tggcgtcgacgatgtgcagcacccggacccgcttgtacgacgccaccctctccgccacgt 32913
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccg 605
|||||| || ||| |||| | |||| ||| || | |||||||||||||||| | |||
Sbjct: 32912 acgccactatctcctcctccccctcctccgcaccgtgccgccgcaccacgcacgccaccg 32853
Query: 606 ggacctcgccggcctcctcgtccggca 632
| |||||||||||||||||||||||||
Sbjct: 32852 gcacctcgccggcctcctcgtccggca 32826
>ref|NT_079856.2| Oryza sativa (japonica cultivar-group)
Length = 961627
Score = 287 bits (145), Expect = 5e-075
Identities = 250/285 (87%)
Strand = Plus / Plus
Query: 634 cccgaagacggcggcgtcctcgacggacgggtgagacagcaggatggcctccagctcggc 693
||||||||||||||||||||| ||||| ||||| || || |||| |||||| ||||||||
Sbjct: 653307 cccgaagacggcggcgtcctcaacggaggggtgggagaggaggacggcctcgagctcggc 653366
Query: 694 aggggcgacctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacac 753
||||||||||| || |||||||||||||| ||||||||||| | |||||||||||||||
Sbjct: 653367 gggggcgacctgaaaccccttgtacttgatcagctccttgatcctgtccacgatgaacac 653426
Query: 754 gtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccccgcggcgtcgat 813
|||||||||| ||||||||||||| |||||||| ||||| ||||||||| | |||| |
Sbjct: 653427 gtcgccgtcgccgtcgatgtacccaacgtcgccggtgtgcagccaccccttgccgtccac 653486
Query: 814 ggtgcgctccgtctcctccttcctcctgtagtagccctgcatcacggcctggctccgcac 873
|||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 653487 cgtgcgctccgtctcctccttcctcttgtagtacccctgcatcacgctctggctccgcac 653546
Query: 874 gcagatctcccccggcgggttcttgggcagcgaccgccccgtgtc 918
||| | ||||||||||| |||| |||||||||| ||| |||||
Sbjct: 653547 gcacagctcccccggcgtgttcgccggcagcgacctcccggtgtc 653591
Score = 172 bits (87), Expect = 2e-040
Identities = 177/207 (85%)
Strand = Plus / Plus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 652855 tcttgatgaactcgtccctaagctgcctcctcaggatcttcccggacaccgacttgggga 652914
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||| |||| | |||||| ||||| | |||||||||||| || | | |||||||||
Sbjct: 652915 tggcgtcgacgatgtgcagcacccggacccgcttgtacgacgccaccctctccgccacgt 652974
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccg 605
|||||| || ||| |||| | |||| ||| || | |||||||||||||||| | |||
Sbjct: 652975 acgccactatctcctcctccccctcctccgcaccgtgccgccgcaccacgcacgccaccg 653034
Query: 606 ggacctcgccggcctcctcgtccggca 632
| |||||||||||||||||||||||||
Sbjct: 653035 gcacctcgccggcctcctcgtccggca 653061
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 287 bits (145), Expect = 5e-075
Identities = 250/285 (87%)
Strand = Plus / Plus
Query: 634 cccgaagacggcggcgtcctcgacggacgggtgagacagcaggatggcctccagctcggc 693
||||||||||||||||||||| ||||| ||||| || || |||| |||||| ||||||||
Sbjct: 4333663 cccgaagacggcggcgtcctcaacggaggggtgggagaggaggacggcctcgagctcggc 4333722
Query: 694 aggggcgacctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacac 753
||||||||||| || |||||||||||||| ||||||||||| | |||||||||||||||
Sbjct: 4333723 gggggcgacctgaaaccccttgtacttgatcagctccttgatcctgtccacgatgaacac 4333782
Query: 754 gtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccccgcggcgtcgat 813
|||||||||| ||||||||||||| |||||||| ||||| ||||||||| | |||| |
Sbjct: 4333783 gtcgccgtcgccgtcgatgtacccaacgtcgccggtgtgcagccaccccttgccgtccac 4333842
Query: 814 ggtgcgctccgtctcctccttcctcctgtagtagccctgcatcacggcctggctccgcac 873
|||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 4333843 cgtgcgctccgtctcctccttcctcttgtagtacccctgcatcacgctctggctccgcac 4333902
Query: 874 gcagatctcccccggcgggttcttgggcagcgaccgccccgtgtc 918
||| | ||||||||||| |||| |||||||||| ||| |||||
Sbjct: 4333903 gcacagctcccccggcgtgttcgccggcagcgacctcccggtgtc 4333947
Score = 172 bits (87), Expect = 2e-040
Identities = 177/207 (85%)
Strand = Plus / Plus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 4333211 tcttgatgaactcgtccctaagctgcctcctcaggatcttcccggacaccgacttgggga 4333270
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||| |||| | |||||| ||||| | |||||||||||| || | | |||||||||
Sbjct: 4333271 tggcgtcgacgatgtgcagcacccggacccgcttgtacgacgccaccctctccgccacgt 4333330
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccg 605
|||||| || ||| |||| | |||| ||| || | |||||||||||||||| | |||
Sbjct: 4333331 acgccactatctcctcctccccctcctccgcaccgtgccgccgcaccacgcacgccaccg 4333390
Query: 606 ggacctcgccggcctcctcgtccggca 632
| |||||||||||||||||||||||||
Sbjct: 4333391 gcacctcgccggcctcctcgtccggca 4333417
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 287 bits (145), Expect = 5e-075
Identities = 250/285 (87%)
Strand = Plus / Plus
Query: 634 cccgaagacggcggcgtcctcgacggacgggtgagacagcaggatggcctccagctcggc 693
||||||||||||||||||||| ||||| ||||| || || |||| |||||| ||||||||
Sbjct: 11681025 cccgaagacggcggcgtcctcaacggaggggtgggagaggaggacggcctcgagctcggc 11681084
Query: 694 aggggcgacctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacac 753
||||||||||| || |||||||||||||| ||||||||||| | |||||||||||||||
Sbjct: 11681085 gggggcgacctgaaaccccttgtacttgatcagctccttgatcctgtccacgatgaacac 11681144
Query: 754 gtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccccgcggcgtcgat 813
|||||||||| ||||||||||||| |||||||| ||||| ||||||||| | |||| |
Sbjct: 11681145 gtcgccgtcgccgtcgatgtacccaacgtcgccggtgtgcagccaccccttgccgtccac 11681204
Query: 814 ggtgcgctccgtctcctccttcctcctgtagtagccctgcatcacggcctggctccgcac 873
|||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 11681205 cgtgcgctccgtctcctccttcctcttgtagtacccctgcatcacgctctggctccgcac 11681264
Query: 874 gcagatctcccccggcgggttcttgggcagcgaccgccccgtgtc 918
||| | ||||||||||| |||| |||||||||| ||| |||||
Sbjct: 11681265 gcacagctcccccggcgtgttcgccggcagcgacctcccggtgtc 11681309
Score = 172 bits (87), Expect = 2e-040
Identities = 177/207 (85%)
Strand = Plus / Plus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 11680573 tcttgatgaactcgtccctaagctgcctcctcaggatcttcccggacaccgacttgggga 11680632
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||| |||| | |||||| ||||| | |||||||||||| || | | |||||||||
Sbjct: 11680633 tggcgtcgacgatgtgcagcacccggacccgcttgtacgacgccaccctctccgccacgt 11680692
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccg 605
|||||| || ||| |||| | |||| ||| || | |||||||||||||||| | |||
Sbjct: 11680693 acgccactatctcctcctccccctcctccgcaccgtgccgccgcaccacgcacgccaccg 11680752
Query: 606 ggacctcgccggcctcctcgtccggca 632
| |||||||||||||||||||||||||
Sbjct: 11680753 gcacctcgccggcctcctcgtccggca 11680779
>emb|AL662942.4|OSJN00135 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033H08,
complete sequence
Length = 141899
Score = 287 bits (145), Expect = 5e-075
Identities = 250/285 (87%)
Strand = Plus / Minus
Query: 634 cccgaagacggcggcgtcctcgacggacgggtgagacagcaggatggcctccagctcggc 693
||||||||||||||||||||| ||||| ||||| || || |||| |||||| ||||||||
Sbjct: 47282 cccgaagacggcggcgtcctcaacggaggggtgggagaggaggacggcctcgagctcggc 47223
Query: 694 aggggcgacctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacac 753
||||||||||| || |||||||||||||| ||||||||||| | |||||||||||||||
Sbjct: 47222 gggggcgacctgaaaccccttgtacttgatcagctccttgatcctgtccacgatgaacac 47163
Query: 754 gtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccccgcggcgtcgat 813
|||||||||| ||||||||||||| |||||||| ||||| ||||||||| | |||| |
Sbjct: 47162 gtcgccgtcgccgtcgatgtacccaacgtcgccggtgtgcagccaccccttgccgtccac 47103
Query: 814 ggtgcgctccgtctcctccttcctcctgtagtagccctgcatcacggcctggctccgcac 873
|||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 47102 cgtgcgctccgtctcctccttcctcttgtagtacccctgcatcacgctctggctccgcac 47043
Query: 874 gcagatctcccccggcgggttcttgggcagcgaccgccccgtgtc 918
||| | ||||||||||| |||| |||||||||| ||| |||||
Sbjct: 47042 gcacagctcccccggcgtgttcgccggcagcgacctcccggtgtc 46998
Score = 172 bits (87), Expect = 2e-040
Identities = 177/207 (85%)
Strand = Plus / Minus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 47734 tcttgatgaactcgtccctaagctgcctcctcaggatcttcccggacaccgacttgggga 47675
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||| |||| | |||||| ||||| | |||||||||||| || | | |||||||||
Sbjct: 47674 tggcgtcgacgatgtgcagcacccggacccgcttgtacgacgccaccctctccgccacgt 47615
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccg 605
|||||| || ||| |||| | |||| ||| || | |||||||||||||||| | |||
Sbjct: 47614 acgccactatctcctcctccccctcctccgcaccgtgccgccgcaccacgcacgccaccg 47555
Query: 606 ggacctcgccggcctcctcgtccggca 632
| |||||||||||||||||||||||||
Sbjct: 47554 gcacctcgccggcctcctcgtccggca 47528
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 287 bits (145), Expect = 5e-075
Identities = 250/285 (87%)
Strand = Plus / Plus
Query: 634 cccgaagacggcggcgtcctcgacggacgggtgagacagcaggatggcctccagctcggc 693
||||||||||||||||||||| ||||| ||||| || || |||| |||||| ||||||||
Sbjct: 14125665 cccgaagacggcggcgtcctcaacggaggggtgggagaggaggacggcctcgagctcggc 14125724
Query: 694 aggggcgacctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacac 753
||||||||||| || |||||||||||||| ||||||||||| | |||||||||||||||
Sbjct: 14125725 gggggcgacctgaaaccccttgtacttgatcagctccttgatcctgtccacgatgaacac 14125784
Query: 754 gtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccccgcggcgtcgat 813
|||||||||| ||||||||||||| |||||||| ||||| ||||||||| | |||| |
Sbjct: 14125785 gtcgccgtcgccgtcgatgtacccaacgtcgccggtgtgcagccaccccttgccgtccac 14125844
Query: 814 ggtgcgctccgtctcctccttcctcctgtagtagccctgcatcacggcctggctccgcac 873
|||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 14125845 cgtgcgctccgtctcctccttcctcttgtagtacccctgcatcacgctctggctccgcac 14125904
Query: 874 gcagatctcccccggcgggttcttgggcagcgaccgccccgtgtc 918
||| | ||||||||||| |||| |||||||||| ||| |||||
Sbjct: 14125905 gcacagctcccccggcgtgttcgccggcagcgacctcccggtgtc 14125949
Score = 172 bits (87), Expect = 2e-040
Identities = 177/207 (85%)
Strand = Plus / Plus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 14125213 tcttgatgaactcgtccctaagctgcctcctcaggatcttcccggacaccgacttgggga 14125272
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||| |||| | |||||| ||||| | |||||||||||| || | | |||||||||
Sbjct: 14125273 tggcgtcgacgatgtgcagcacccggacccgcttgtacgacgccaccctctccgccacgt 14125332
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccg 605
|||||| || ||| |||| | |||| ||| || | |||||||||||||||| | |||
Sbjct: 14125333 acgccactatctcctcctccccctcctccgcaccgtgccgccgcaccacgcacgccaccg 14125392
Query: 606 ggacctcgccggcctcctcgtccggca 632
| |||||||||||||||||||||||||
Sbjct: 14125393 gcacctcgccggcctcctcgtccggca 14125419
>gb|AQ259091.1|AQ259091 nbxb0022K01r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0022K01r, DNA sequence
Length = 688
Score = 165 bits (83), Expect = 5e-038
Identities = 176/207 (85%)
Strand = Plus / Plus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 318 tcttgatgaactcgtccctaagctgcctcctcaggatcttcccggacaccgacttgggga 377
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||| |||| | |||||| ||||| | |||||||||||| || | | |||||||||
Sbjct: 378 tggcgtcgacgatgtgcagcacccggacccgcttgtacgacgccaccctctccgccacgt 437
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccg 605
|||||| || ||| |||| | |||| ||| || | |||||||||||||||| | |||
Sbjct: 438 acgccactatctcctcctccccctcctccgcaccgtgccgccgcaccacgcacgccaccg 497
Query: 606 ggacctcgccggcctcctcgtccggca 632
| ||||||||||||| |||||||||||
Sbjct: 498 gcacctcgccggccttctcgtccggca 524
>dbj|AK120964.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040C04, full
insert sequence
Length = 1979
Score = 137 bits (69), Expect = 1e-029
Identities = 111/125 (88%)
Strand = Plus / Minus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1458 atggcctcgagctcggcgggggcgacctggaagcccttgtacttgatgagctccttgagc 1399
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagc 796
|||||||||||||| | ||| |||||||||||| | | |||| |||||| ||||| |||
Sbjct: 1398 cggtccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtcgccagtgtgcagc 1339
Query: 797 caccc 801
|||||
Sbjct: 1338 caccc 1334
>dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0409A07
Length = 146663
Score = 137 bits (69), Expect = 1e-029
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 67242 atggcctcgagctcggcgggggcgacctggaagcccttgtacttgatgagctccttgagc 67301
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagc 796
|||||||||||||| | ||| |||||||||||| | | |||| |||||| ||||| |||
Sbjct: 67302 cggtccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtcgccagtgtgcagc 67361
Query: 797 caccc 801
|||||
Sbjct: 67362 caccc 67366
>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0429B05
Length = 155024
Score = 137 bits (69), Expect = 1e-029
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 146156 atggcctcgagctcggcgggggcgacctggaagcccttgtacttgatgagctccttgagc 146215
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagc 796
|||||||||||||| | ||| |||||||||||| | | |||| |||||| ||||| |||
Sbjct: 146216 cggtccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtcgccagtgtgcagc 146275
Query: 797 caccc 801
|||||
Sbjct: 146276 caccc 146280
>gb|AACV01018590.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018590, whole
genome shotgun sequence
Length = 19294
Score = 137 bits (69), Expect = 1e-029
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 9768 atggcctcgagctcggcgggggcgacctggaagcccttgtacttgatgagctccttgagc 9827
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagc 796
|||||||||||||| | ||| |||||||||||| | | |||| |||||| ||||| |||
Sbjct: 9828 cggtccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtcgccagtgtgcagc 9887
Query: 797 caccc 801
|||||
Sbjct: 9888 caccc 9892
>ref|XM_482683.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1979
Score = 137 bits (69), Expect = 1e-029
Identities = 111/125 (88%)
Strand = Plus / Minus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1458 atggcctcgagctcggcgggggcgacctggaagcccttgtacttgatgagctccttgagc 1399
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagc 796
|||||||||||||| | ||| |||||||||||| | | |||| |||||| ||||| |||
Sbjct: 1398 cggtccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtcgccagtgtgcagc 1339
Query: 797 caccc 801
|||||
Sbjct: 1338 caccc 1334
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 137 bits (69), Expect = 1e-029
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 21628486 atggcctcgagctcggcgggggcgacctggaagcccttgtacttgatgagctccttgagc 21628545
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagc 796
|||||||||||||| | ||| |||||||||||| | | |||| |||||| ||||| |||
Sbjct: 21628546 cggtccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtcgccagtgtgcagc 21628605
Query: 797 caccc 801
|||||
Sbjct: 21628606 caccc 21628610
Score = 101 bits (51), Expect = 7e-019
Identities = 105/123 (85%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||||||||| |||||||| |||||||||||| |||| ||||||| |||||||| |
Sbjct: 8639195 ggcctccagctctgcaggggctacctggaagcccctgtatttgatgatctccttgagcct 8639136
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||||||||||| | ||| |||||||||||| ||| |||| |||||| ||||| |||||
Sbjct: 8639135 atccacgatgaagatctcgtcgtcgtcgtcgacgtagccgatgtcgccggtgtgcagcca 8639076
Query: 799 ccc 801
|||
Sbjct: 8639075 ccc 8639073
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 137 bits (69), Expect = 1e-029
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 13106326 atggcctcgagctcggcgggggcgacctggaagcccttgtacttgatgagctccttgagc 13106385
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagc 796
|||||||||||||| | ||| |||||||||||| | | |||| |||||| ||||| |||
Sbjct: 13106386 cggtccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtcgccagtgtgcagc 13106445
Query: 797 caccc 801
|||||
Sbjct: 13106446 caccc 13106450
Score = 101 bits (51), Expect = 7e-019
Identities = 105/123 (85%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||||||||| |||||||| |||||||||||| |||| ||||||| |||||||| |
Sbjct: 684255 ggcctccagctctgcaggggctacctggaagcccctgtatttgatgatctccttgagcct 684196
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||||||||||| | ||| |||||||||||| ||| |||| |||||| ||||| |||||
Sbjct: 684195 atccacgatgaagatctcgtcgtcgtcgtcgacgtagccgatgtcgccggtgtgcagcca 684136
Query: 799 ccc 801
|||
Sbjct: 684135 ccc 684133
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 137 bits (69), Expect = 1e-029
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 20708332 atggcctcgagctcggcgggggcgacctggaagcccttgtacttgatgagctccttgagc 20708391
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagc 796
|||||||||||||| | ||| |||||||||||| | | |||| |||||| ||||| |||
Sbjct: 20708392 cggtccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtcgccagtgtgcagc 20708451
Query: 797 caccc 801
|||||
Sbjct: 20708452 caccc 20708456
Score = 101 bits (51), Expect = 7e-019
Identities = 105/123 (85%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||||||||| |||||||| |||||||||||| |||| ||||||| |||||||| |
Sbjct: 8286261 ggcctccagctctgcaggggctacctggaagcccctgtatttgatgatctccttgagcct 8286202
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||||||||||| | ||| |||||||||||| ||| |||| |||||| ||||| |||||
Sbjct: 8286201 atccacgatgaagatctcgtcgtcgtcgtcgacgtagccgatgtcgccggtgtgcagcca 8286142
Query: 799 ccc 801
|||
Sbjct: 8286141 ccc 8286139
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 137 bits (69), Expect = 1e-029
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 21866573 atggcctcgagctcggcgggggcgacctggaagcccttgtacttgatgagctccttgagc 21866632
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagc 796
|||||||||||||| | ||| |||||||||||| | | |||| |||||| ||||| |||
Sbjct: 21866633 cggtccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtcgccagtgtgcagc 21866692
Query: 797 caccc 801
|||||
Sbjct: 21866693 caccc 21866697
Score = 101 bits (51), Expect = 7e-019
Identities = 105/123 (85%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||||||||| |||||||| |||||||||||| |||| ||||||| |||||||| |
Sbjct: 8871669 ggcctccagctctgcaggggctacctggaagcccctgtatttgatgatctccttgagcct 8871610
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||||||||||| | ||| |||||||||||| ||| |||| |||||| ||||| |||||
Sbjct: 8871609 atccacgatgaagatctcgtcgtcgtcgtcgacgtagccgatgtcgccggtgtgcagcca 8871550
Query: 799 ccc 801
|||
Sbjct: 8871549 ccc 8871547
>gb|AQ863344.1|AQ863344 nbeb0020D16r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0020D16r, DNA sequence
Length = 425
Score = 131 bits (66), Expect = 7e-028
Identities = 111/126 (88%)
Strand = Plus / Plus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 251 tcttgatgaactcgtccctaagctgcctcctcaggatcttcccggacaccgacttgggga 310
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||| |||| | |||||| ||||| | |||||||||||| || | | |||||||||
Sbjct: 311 tggcgtcgacgatgtgcagcacccggacccgcttgtacgacgccaccctctccgccacgt 370
Query: 546 acgcca 551
||||||
Sbjct: 371 acgcca 376
>gb|AU311991.1|AU311991 AU311991 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA0702, mRNA sequence
Length = 355
Score = 131 bits (66), Expect = 7e-028
Identities = 111/126 (88%)
Strand = Plus / Minus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 126 tcttgatgaactcgtccctaagctgcctcctcaggatcttcccggacaccgacttgggga 67
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||| |||| | |||||| ||||| | |||||||||||| || | | |||||||||
Sbjct: 66 tggcgtcgacgatgtgcagcacccggacccgcttgtacgacgccaccctctccgccacgt 7
Query: 546 acgcca 551
||||||
Sbjct: 6 acgcca 1
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| |
Sbjct: 7455715 aggcgtaccggccgtgccccggcttcgtcgcctccggcggccggtaccggaggcaggggc 7455774
Query: 61 aaagcatggacgacgttgcatccggcagggggaa 94
| ||||||||||| || || |||||||| |||||
Sbjct: 7455775 agagcatggacgatgtggcttccggcagagggaa 7455808
>ref|NM_188655.1| Oryza sativa (japonica cultivar-group), Ozsa8258 predicted mRNA
Length = 537
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| |
Sbjct: 392 aggcgtaccggccgtgccccggcttcgtcgcctccggcggccggtaccggaggcaggggc 451
Query: 61 aaagcatggacgacgttgcatccggcagggggaa 94
| ||||||||||| || || |||||||| |||||
Sbjct: 452 agagcatggacgatgtggcttccggcagagggaa 485
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| |
Sbjct: 7455555 aggcgtaccggccgtgccccggcttcgtcgcctccggcggccggtaccggaggcaggggc 7455614
Query: 61 aaagcatggacgacgttgcatccggcagggggaa 94
| ||||||||||| || || |||||||| |||||
Sbjct: 7455615 agagcatggacgatgtggcttccggcagagggaa 7455648
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0708G02
Length = 168976
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| |
Sbjct: 6725 aggcgtaccggccgtgccccggcttcgtcgcctccggcggccggtaccggaggcaggggc 6784
Query: 61 aaagcatggacgacgttgcatccggcagggggaa 94
| ||||||||||| || || |||||||| |||||
Sbjct: 6785 agagcatggacgatgtggcttccggcagagggaa 6818
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0702F03
Length = 141111
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| |
Sbjct: 118961 aggcgtaccggccgtgccccggcttcgtcgcctccggcggccggtaccggaggcaggggc 119020
Query: 61 aaagcatggacgacgttgcatccggcagggggaa 94
| ||||||||||| || || |||||||| |||||
Sbjct: 119021 agagcatggacgatgtggcttccggcagagggaa 119054
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| |
Sbjct: 7457933 aggcgtaccggccgtgccccggcttcgtcgcctccggcggccggtaccggaggcaggggc 7457992
Query: 61 aaagcatggacgacgttgcatccggcagggggaa 94
| ||||||||||| || || |||||||| |||||
Sbjct: 7457993 agagcatggacgatgtggcttccggcagagggaa 7458026
>dbj|AK105636.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-D12, full
insert sequence
Length = 2288
Score = 103 bits (52), Expect = 2e-019
Identities = 112/132 (84%)
Strand = Plus / Minus
Query: 682 ctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcggtc 741
|||||||||||| || | |||||||| |||||| | |||||||||||||||| |||||
Sbjct: 1682 ctccagctcggccggcggcacctggaaccccttgaatttgatgagctccttgacacggtc 1623
Query: 742 cacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccc 801
|||||||| || ||| |||||||||||| ||| |||| |||||| ||||| ||||||||
Sbjct: 1622 gacgatgaagacctcgtcgtcgtcgtcgacgtagccgatgtcgccggtgtgcagccaccc 1563
Query: 802 cgcggcgtcgat 813
| || |||||||
Sbjct: 1562 ctcgacgtcgat 1551
>ref|XM_467290.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2288
Score = 103 bits (52), Expect = 2e-019
Identities = 112/132 (84%)
Strand = Plus / Minus
Query: 682 ctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcggtc 741
|||||||||||| || | |||||||| |||||| | |||||||||||||||| |||||
Sbjct: 1682 ctccagctcggccggcggcacctggaaccccttgaatttgatgagctccttgacacggtc 1623
Query: 742 cacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccc 801
|||||||| || ||| |||||||||||| ||| |||| |||||| ||||| ||||||||
Sbjct: 1622 gacgatgaagacctcgtcgtcgtcgtcgacgtagccgatgtcgccggtgtgcagccaccc 1563
Query: 802 cgcggcgtcgat 813
| || |||||||
Sbjct: 1562 ctcgacgtcgat 1551
>dbj|AK069932.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036P12, full
insert sequence
Length = 2066
Score = 101 bits (51), Expect = 7e-019
Identities = 105/123 (85%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||||||||| |||||||| |||||||||||| |||| ||||||| |||||||| |
Sbjct: 1473 ggcctccagctctgcaggggctacctggaagcccctgtatttgatgatctccttgagcct 1414
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||||||||||| | ||| |||||||||||| ||| |||| |||||| ||||| |||||
Sbjct: 1413 atccacgatgaagatctcgtcgtcgtcgtcgacgtagccgatgtcgccggtgtgcagcca 1354
Query: 799 ccc 801
|||
Sbjct: 1353 ccc 1351
>gb|AACV01017731.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017731, whole
genome shotgun sequence
Length = 23379
Score = 101 bits (51), Expect = 7e-019
Identities = 105/123 (85%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||||||||| |||||||| |||||||||||| |||| ||||||| |||||||| |
Sbjct: 6920 ggcctccagctctgcaggggctacctggaagcccctgtatttgatgatctccttgagcct 6861
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||||||||||| | ||| |||||||||||| ||| |||| |||||| ||||| |||||
Sbjct: 6860 atccacgatgaagatctcgtcgtcgtcgtcgacgtagccgatgtcgccggtgtgcagcca 6801
Query: 799 ccc 801
|||
Sbjct: 6800 ccc 6798
>ref|XM_480952.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2066
Score = 101 bits (51), Expect = 7e-019
Identities = 105/123 (85%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||||||||| |||||||| |||||||||||| |||| ||||||| |||||||| |
Sbjct: 1473 ggcctccagctctgcaggggctacctggaagcccctgtatttgatgatctccttgagcct 1414
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||||||||||| | ||| |||||||||||| ||| |||| |||||| ||||| |||||
Sbjct: 1413 atccacgatgaagatctcgtcgtcgtcgtcgacgtagccgatgtcgccggtgtgcagcca 1354
Query: 799 ccc 801
|||
Sbjct: 1353 ccc 1351
>dbj|AP003859.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1033_B09
Length = 120648
Score = 101 bits (51), Expect = 7e-019
Identities = 105/123 (85%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||||||||| |||||||| |||||||||||| |||| ||||||| |||||||| |
Sbjct: 55312 ggcctccagctctgcaggggctacctggaagcccctgtatttgatgatctccttgagcct 55253
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||||||||||| | ||| |||||||||||| ||| |||| |||||| ||||| |||||
Sbjct: 55252 atccacgatgaagatctcgtcgtcgtcgtcgacgtagccgatgtcgccggtgtgcagcca 55193
Query: 799 ccc 801
|||
Sbjct: 55192 ccc 55190
>emb|X52623.1|OS4CL Rice 4-CL gene for 4-coumarate-CoA ligase (EC 6.2.1.12)
Length = 5225
Score = 101 bits (51), Expect = 7e-019
Identities = 105/123 (85%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||||||||| |||||||| |||||||||||| |||| ||||||| |||||||| |
Sbjct: 4381 ggcctccagctctgcaggggctacctggaagcccctgtatttgatgatctccttgagcct 4322
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||||||||||| | ||| |||||||||||| ||| |||| |||||| ||||| |||||
Sbjct: 4321 atccacgatgaagatctcgtcgtcgtcgtcgacgtagccgatgtcgccggtgtgcagcca 4262
Query: 799 ccc 801
|||
Sbjct: 4261 ccc 4259
>gb|CF334787.1|CF334787 JMT--04-D08.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--04-D08, mRNA sequence
Length = 547
Score = 99.6 bits (50), Expect = 3e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| |
Sbjct: 462 aggcgtaccggccgtgccccggcttcgtcgcctccggcggccggtaccggaggcaggggc 521
Query: 61 aaagcatggacgacgttgcatccggc 86
| ||||||||||| || || ||||||
Sbjct: 522 agagcatggacgatgtggcttccggc 547
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 97.6 bits (49), Expect = 1e-017
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 701 acctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacacgtcgccg 760
|||||||| |||||| | |||||||||||||||| ||||| |||||||| || ||| ||
Sbjct: 3861579 acctggaaccccttgaatttgatgagctccttgacacggtcgacgatgaagacctcgtcg 3861638
Query: 761 tcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccccgcggcgtcgat 813
|||||||||| ||| |||| |||||| ||||| ||||||||| || |||||||
Sbjct: 3861639 tcgtcgtcgacgtagccgatgtcgccggtgtgcagccacccctcgacgtcgat 3861691
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0459B01
Length = 163087
Score = 97.6 bits (49), Expect = 1e-017
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 701 acctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacacgtcgccg 760
|||||||| |||||| | |||||||||||||||| ||||| |||||||| || ||| ||
Sbjct: 13153 acctggaaccccttgaatttgatgagctccttgacacggtcgacgatgaagacctcgtcg 13212
Query: 761 tcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccccgcggcgtcgat 813
|||||||||| ||| |||| |||||| ||||| ||||||||| || |||||||
Sbjct: 13213 tcgtcgtcgacgtagccgatgtcgccggtgtgcagccacccctcgacgtcgat 13265
>dbj|AP005868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0666E12
Length = 47765
Score = 97.6 bits (49), Expect = 1e-017
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 701 acctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacacgtcgccg 760
|||||||| |||||| | |||||||||||||||| ||||| |||||||| || ||| ||
Sbjct: 44593 acctggaaccccttgaatttgatgagctccttgacacggtcgacgatgaagacctcgtcg 44652
Query: 761 tcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccccgcggcgtcgat 813
|||||||||| ||| |||| |||||| ||||| ||||||||| || |||||||
Sbjct: 44653 tcgtcgtcgacgtagccgatgtcgccggtgtgcagccacccctcgacgtcgat 44705
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 97.6 bits (49), Expect = 1e-017
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 701 acctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacacgtcgccg 760
|||||||| |||||| | |||||||||||||||| ||||| |||||||| || ||| ||
Sbjct: 28696580 acctggaaccccttgaatttgatgagctccttgacacggtcgacgatgaagacctcgtcg 28696639
Query: 761 tcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccccgcggcgtcgat 813
|||||||||| ||| |||| |||||| ||||| ||||||||| || |||||||
Sbjct: 28696640 tcgtcgtcgacgtagccgatgtcgccggtgtgcagccacccctcgacgtcgat 28696692
Score = 83.8 bits (42), Expect = 2e-013
Identities = 114/138 (82%)
Strand = Plus / Minus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
|||||||||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 4285159 gcctccagctcggccggtggcacctggaaccccttgtacttgatgatctccttgagcctg 4285100
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccac 799
||||||||||| | ||| |||||||||||| | | |||| ||| || ||||| ||||||
Sbjct: 4285099 tccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtctccggtgtgcagccac 4285040
Query: 800 cccgcggcgtcgatggtg 817
|| | |||||||||||
Sbjct: 4285039 ccgtcctcgtcgatggtg 4285022
>gb|CF335205.1|CF335205 JMT--04-M19.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--04-M19, mRNA sequence
Length = 511
Score = 93.7 bits (47), Expect = 2e-016
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
|||||||||||||||||||||| |||||||| ||||||||||| |||||| | ||||| |
Sbjct: 486 aggcgtaccggccgtgccccggtttcgtcgcctccggcggccggtaccggaggcaggggc 427
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaaa 119
| |||||||||| || || ||||||| ||||||||| ||||| ||| ||||||||
Sbjct: 426 agagcatggacggtgtggcttccggcaaagggaaaaaggtcccctcccccaccaaaaaa 368
>gb|AACV01000529.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000529, whole
genome shotgun sequence
Length = 39544
Score = 93.7 bits (47), Expect = 2e-016
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
|||| |||||||||||||||||||||||||| ||||||||||| |||||| | ||||| |
Sbjct: 39148 aggcttaccggccgtgccccggcttcgtcgcctccggcggccggtaccggaggcaggggc 39089
Query: 61 aaagcatggac 71
|||||||||||
Sbjct: 39088 aaagcatggac 39078
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 93.7 bits (47), Expect = 2e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
|||| |||||||||||||||||||||||||| ||||||||||| |||||| | ||||| |
Sbjct: 7537019 aggcttaccggccgtgccccggcttcgtcgcctccggcggccggtaccggaggcaggggc 7537078
Query: 61 aaagcatggac 71
|||||||||||
Sbjct: 7537079 aaagcatggac 7537089
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 93.7 bits (47), Expect = 2e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
|||| |||||||||||||||||||||||||| ||||||||||| |||||| | ||||| |
Sbjct: 7537019 aggcttaccggccgtgccccggcttcgtcgcctccggcggccggtaccggaggcaggggc 7537078
Query: 61 aaagcatggac 71
|||||||||||
Sbjct: 7537079 aaagcatggac 7537089
>gb|D41112.1|D41112 RICS3391A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 332
Score = 83.8 bits (42), Expect = 2e-013
Identities = 114/138 (82%)
Strand = Plus / Minus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
|||||||||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 267 gcctccagctcggccggtggcacctggaaccccttgtacttgatgatctccttgagcctg 208
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccac 799
||||||||||| | ||| |||||||||||| | | |||| ||| || ||||| ||||||
Sbjct: 207 tccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtctccggtgtgcagccac 148
Query: 800 cccgcggcgtcgatggtg 817
|| | |||||||||||
Sbjct: 147 ccgtcctcgtcgatggtg 130
>gb|D47966.1|D47966 RICS13787A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 415
Score = 83.8 bits (42), Expect = 2e-013
Identities = 114/138 (82%)
Strand = Plus / Minus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
|||||||||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 248 gcctccagctcggccggtggcacctggaaccccttgtacttgatgatctccttgagcctg 189
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccac 799
||||||||||| | ||| |||||||||||| | | |||| ||| || ||||| ||||||
Sbjct: 188 tccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtctccggtgtgcagccac 129
Query: 800 cccgcggcgtcgatggtg 817
|| | |||||||||||
Sbjct: 128 ccgtcctcgtcgatggtg 111
>gb|CB000351.1|CB000351 S345U_D03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 761
Score = 83.8 bits (42), Expect = 2e-013
Identities = 102/122 (83%)
Strand = Plus / Minus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
|||||||||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 180 gcctccagctcggccggtggcacctggaaccccttgtacttgatgatctccttgagcctg 121
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccac 799
||||||||||| | ||| |||||||||||| | | |||| ||| || ||||| ||||||
Sbjct: 120 tccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtctccggtgtgcagccac 61
Query: 800 cc 801
||
Sbjct: 60 cc 59
>gb|CB653843.1|CB653843 OSJNEc05E03.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05E03 3', mRNA sequence
Length = 811
Score = 83.8 bits (42), Expect = 2e-013
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
|||||||||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 627 gcctccagctcggccggtggcacctggaaccccttgtacttgatgatctccttgagcctg 686
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccac 799
||||||||||| | ||| |||||||||||| | | |||| ||| || ||||| ||||||
Sbjct: 687 tccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtctccggtgtgcagccac 746
Query: 800 cccgcggcgtcgatggtg 817
|| | |||||||||||
Sbjct: 747 ccgtcctcgtcgatggtg 764
>gb|CB654031.1|CB654031 OSJNEc05J16.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05J16 3', mRNA sequence
Length = 755
Score = 83.8 bits (42), Expect = 2e-013
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
|||||||||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 574 gcctccagctcggccggtggcacctggaaccccttgtacttgatgatctccttgagcctg 633
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccac 799
||||||||||| | ||| |||||||||||| | | |||| ||| || ||||| ||||||
Sbjct: 634 tccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtctccggtgtgcagccac 693
Query: 800 cccgcggcgtcgatggtg 817
|| | |||||||||||
Sbjct: 694 ccgtcctcgtcgatggtg 711
>gb|CB655489.1|CB655489 OSJNEc08P15.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08P15 3', mRNA sequence
Length = 810
Score = 83.8 bits (42), Expect = 2e-013
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
|||||||||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 629 gcctccagctcggccggtggcacctggaaccccttgtacttgatgatctccttgagcctg 688
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccac 799
||||||||||| | ||| |||||||||||| | | |||| ||| || ||||| ||||||
Sbjct: 689 tccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtctccggtgtgcagccac 748
Query: 800 cccgcggcgtcgatggtg 817
|| | |||||||||||
Sbjct: 749 ccgtcctcgtcgatggtg 766
>gb|CB676498.1|CB676498 OSJNEe12M15.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe12M15 3', mRNA sequence
Length = 734
Score = 83.8 bits (42), Expect = 2e-013
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
|||||||||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 584 gcctccagctcggccggtggcacctggaaccccttgtacttgatgatctccttgagcctg 643
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccac 799
||||||||||| | ||| |||||||||||| | | |||| ||| || ||||| ||||||
Sbjct: 644 tccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtctccggtgtgcagccac 703
Query: 800 cccgcggcgtcgatggtg 817
|| | |||||||||||
Sbjct: 704 ccgtcctcgtcgatggtg 721
>gb|CB684593.1|CB684593 OSJNEf14E12.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14E12 5', mRNA sequence
Length = 794
Score = 83.8 bits (42), Expect = 2e-013
Identities = 114/138 (82%)
Strand = Plus / Minus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
|||||||||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 779 gcctccagctcggccggtggcacctggaaccccttgtacttgatgatctccttgagcctg 720
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccac 799
||||||||||| | ||| |||||||||||| | | |||| ||| || ||||| ||||||
Sbjct: 719 tccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtctccggtgtgcagccac 660
Query: 800 cccgcggcgtcgatggtg 817
|| | |||||||||||
Sbjct: 659 ccgtcctcgtcgatggtg 642
>gb|CB684594.1|CB684594 OSJNEf14E12.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14E12 3', mRNA sequence
Length = 749
Score = 83.8 bits (42), Expect = 2e-013
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
|||||||||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 566 gcctccagctcggccggtggcacctggaaccccttgtacttgatgatctccttgagcctg 625
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccac 799
||||||||||| | ||| |||||||||||| | | |||| ||| || ||||| ||||||
Sbjct: 626 tccacgatgaagatctcgtcgtcgtcgtcgacgaagccgatgtctccggtgtgcagccac 685
Query: 800 cccgcggcgtcgatggtg 817
|| | |||||||||||
Sbjct: 686 ccgtcctcgtcgatggtg 703
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,655,579
Number of Sequences: 438736
Number of extensions: 1655579
Number of successful extensions: 18172
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 68
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17421
Number of HSP's gapped (non-prelim): 737
length of query: 919
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 898
effective length of database: 2,791,206,460
effective search space: 2506503401080
effective search space used: 2506503401080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)