BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441599.2.2
(767 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AQ331023.1|AQ331023 nbxb0048H11f CUGI Rice BAC Library O... 266 2e-068
dbj|AP005529.3| Oryza sativa (japonica cultivar-group) geno... 266 2e-068
gb|AACV01018908.1| Oryza sativa (japonica cultivar-group) c... 266 2e-068
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 266 2e-068
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 266 2e-068
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 266 2e-068
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 266 2e-068
gb|AU184875.1|AU184875 AU184875 Rice cDNA from young root O... 264 6e-068
gb|CA755322.1|CA755322 BR030018000_PLATE_A02_9_007.ab1 OA O... 264 6e-068
gb|CF279059.1|CF279059 14ETL--05-D15.g1 Rice etiolated leaf... 264 6e-068
gb|CF324908.1|CF324908 JMT1--01-M19.g1 AtJMT-overexpressing... 264 6e-068
gb|CF330929.1|CF330929 NACL--06-N15.b1 Rice callus plasmid ... 264 6e-068
gb|CO435690.1|CO435690 OsMR756 5MT resistant rice mutant cD... 264 6e-068
gb|CV723496.1|CV723496 root--03-M03.g1 Rice root lambda pha... 264 6e-068
gb|CV729006.1|CV729006 FLO--01-K01.b1 Rice flower lambda ph... 264 6e-068
gb|BP184732.1|BP184732 BP184732 pNS rice panicle cDNA, flow... 264 6e-068
dbj|AB011262.1| Oryza sativa (japonica cultivar-group) mRNA... 264 6e-068
dbj|AK065141.1| Oryza sativa (japonica cultivar-group) cDNA... 264 6e-068
dbj|AK119730.1| Oryza sativa (japonica cultivar-group) cDNA... 264 6e-068
ref|XM_483494.1| Oryza sativa (japonica cultivar-group), mRNA 264 6e-068
gb|CV725400.1|CV725400 14Salt--02-H12.g1 Salt treated rice ... 256 2e-065
gb|CV725668.1|CV725668 14Salt--02-N23.b1 Salt treated rice ... 248 4e-063
gb|AU160916.1|AU160916 AU160916 Rice callus Oryza sativa (j... 234 6e-059
gb|CV729007.1|CV729007 FLO--01-K01.g1 Rice flower lambda ph... 228 4e-057
gb|D23112.1|D23112 RICC2215A Rice callus Oryza sativa (japo... 188 3e-045
gb|AU164238.1|AU164238 AU164238 Rice panicle (longer than 1... 176 1e-041
gb|AU182504.1|AU182504 AU182504 Rice panicle at flowering s... 176 1e-041
gb|C96652.1|C96652 C96652 Rice callus Oryza sativa (japonic... 168 3e-039
gb|AU182748.1|AU182748 AU182748 Rice panicle shorter than 3... 157 1e-035
gb|C74676.1|C74676 C74676 Rice cDNA from immature leaf incl... 151 7e-034
gb|C29178.1|C29178 C29178 Rice callus cDNA Oryza sativa (ja... 147 1e-032
gb|AU223403.1|AU223403 AU223403 Rice shoot Oryza sativa (ja... 145 4e-032
gb|CF330930.1|CF330930 NACL--06-N15.g1 Rice callus plasmid ... 141 6e-031
gb|C25303.1|C25303 C25303 Rice shoot Oryza sativa (japonica... 135 4e-029
gb|CF279058.1|CF279058 14ETL--05-D15.b1 Rice etiolated leaf... 135 4e-029
gb|AU030420.1|AU030420 AU030420 Rice cDNA from immature lea... 131 6e-028
gb|C73195.1|C73195 C73195 Rice panicle at flowering stage O... 121 6e-025
gb|C73872.1|C73872 C73872 Rice panicle (longer than 10cm) O... 121 6e-025
gb|D22224.1|D22224 RICC10529A Rice callus Oryza sativa (jap... 113 1e-022
gb|C27634.1|C27634 C27634 Rice callus cDNA Oryza sativa (ja... 109 2e-021
gb|AU058367.1|AU058367 AU058367 Oryza sativa Nipponbare imm... 101 5e-019
gb|C25402.1|C25402 C25402 Rice shoot Oryza sativa (japonica... 96 3e-017
gb|C27469.1|C27469 C27469 Rice callus cDNA Oryza sativa (ja... 86 3e-014
gb|AU184876.1|AU184876 AU184876 Rice cDNA from young root O... 78 8e-012
gb|CF335336.1|CF335336 JMT--04-P15.g1 AtJMT-overexpressing ... 76 3e-011
gb|CV725859.1|CV725859 14Salt--03-D02.b1 Salt treated rice ... 76 3e-011
gb|CV727494.1|CV727494 14Salt--05-K16.b1 Salt treated rice ... 76 3e-011
gb|CV728272.1|CV728272 14Salt--06-O09.b1 Salt treated rice ... 76 3e-011
dbj|AK073030.1| Oryza sativa (japonica cultivar-group) cDNA... 76 3e-011
dbj|AK098941.1| Oryza sativa (japonica cultivar-group) cDNA... 76 3e-011
dbj|AP003345.3| Oryza sativa (japonica cultivar-group) geno... 76 3e-011
gb|AACV01002475.1| Oryza sativa (japonica cultivar-group) c... 76 3e-011
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 76 3e-011
ref|NM_190845.1| Oryza sativa (japonica cultivar-group), p... 76 3e-011
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 76 3e-011
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 76 3e-011
gb|AU182187.1|AU182187 AU182187 Rice callus (2001) Oryza sa... 74 1e-010
gb|AU030421.1|AU030421 AU030421 Rice cDNA from immature lea... 72 5e-010
gb|CV725339.1|CV725339 14Salt--02-F24.g1 Salt treated rice ... 72 5e-010
gb|AU223319.1|AU223319 AU223319 Rice shoot Oryza sativa (ja... 70 2e-009
gb|CV725860.1|CV725860 14Salt--03-D02.g1 Salt treated rice ... 52 5e-004
gb|CV728273.1|CV728273 14Salt--06-O09.g1 Salt treated rice ... 52 5e-004
gb|CF335335.1|CF335335 JMT--04-P15.b1 AtJMT-overexpressing ... 44 0.11
gb|CV727495.1|CV727495 14Salt--05-K16.g1 Salt treated rice ... 44 0.11
gb|AACV01009800.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
ref|NT_079861.2| Oryza sativa (japonica cultivar-group) 42 0.43
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC... 42 0.43
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.43
>gb|AQ331023.1|AQ331023 nbxb0048H11f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0048H11f, DNA sequence
Length = 750
Score = 266 bits (134), Expect = 2e-068
Identities = 257/298 (86%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 35 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 94
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 95 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 154
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 155 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 214
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 215 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 274
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccagg 421
||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 275 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagg 332
>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0702E04
Length = 190948
Score = 266 bits (134), Expect = 2e-068
Identities = 257/298 (86%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 78853 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 78794
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 78793 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 78734
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 78733 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 78674
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 78673 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 78614
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccagg 421
||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 78613 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagg 78556
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 457 gtgcagaatgacatgttccgcctgaactatgg 488
|||||||| ||||||||||| |||||||||||
Sbjct: 77110 gtgcagaacgacatgttccgtctgaactatgg 77079
>gb|AACV01018908.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018908, whole
genome shotgun sequence
Length = 27271
Score = 266 bits (134), Expect = 2e-068
Identities = 257/298 (86%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 23710 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 23769
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 23770 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 23829
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 23830 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 23889
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 23890 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 23949
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccagg 421
||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 23950 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagg 24007
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 457 gtgcagaatgacatgttccgcctgaactatgg 488
|||||||| ||||||||||| |||||||||||
Sbjct: 25453 gtgcagaacgacatgttccgtctgaactatgg 25484
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 266 bits (134), Expect = 2e-068
Identities = 257/298 (86%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 26291899 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 26291840
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 26291839 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 26291780
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 26291779 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 26291720
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 26291719 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 26291660
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccagg 421
||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 26291659 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagg 26291602
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 457 gtgcagaatgacatgttccgcctgaactatgg 488
|||||||| ||||||||||| |||||||||||
Sbjct: 26290156 gtgcagaacgacatgttccgtctgaactatgg 26290125
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 266 bits (134), Expect = 2e-068
Identities = 257/298 (86%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 17753415 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 17753356
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 17753355 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 17753296
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 17753295 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 17753236
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 17753235 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 17753176
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccagg 421
||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 17753175 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagg 17753118
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 457 gtgcagaatgacatgttccgcctgaactatgg 488
|||||||| ||||||||||| |||||||||||
Sbjct: 17751672 gtgcagaacgacatgttccgtctgaactatgg 17751641
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 266 bits (134), Expect = 2e-068
Identities = 257/298 (86%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 25355421 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 25355362
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 25355361 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 25355302
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 25355301 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 25355242
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 25355241 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 25355182
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccagg 421
||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 25355181 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagg 25355124
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 457 gtgcagaatgacatgttccgcctgaactatgg 488
|||||||| ||||||||||| |||||||||||
Sbjct: 25353678 gtgcagaacgacatgttccgtctgaactatgg 25353647
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 266 bits (134), Expect = 2e-068
Identities = 257/298 (86%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 26529986 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 26529927
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 26529926 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 26529867
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 26529866 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 26529807
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 26529806 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 26529747
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccagg 421
||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 26529746 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagg 26529689
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 457 gtgcagaatgacatgttccgcctgaactatgg 488
|||||||| ||||||||||| |||||||||||
Sbjct: 26528243 gtgcagaacgacatgttccgtctgaactatgg 26528212
>gb|AU184875.1|AU184875 AU184875 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10757, mRNA sequence
Length = 455
Score = 264 bits (133), Expect = 6e-068
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 49 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 108
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 109 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 168
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 169 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 228
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 229 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 288
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 289 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 348
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 349 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 408
Query: 484 tatgg 488
|||||
Sbjct: 409 tatgg 413
>gb|CA755322.1|CA755322 BR030018000_PLATE_A02_9_007.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030018000_PLATE_A02_9_007.ab1 similar to Nuclear
transport factor 2 (NTF-2) gi|5360221|dbj|BAA81910.1|
(AB011262) nuclear transport factor 2 (NTF2) [Oryza
sativa (japonica cultivar-group)], mRNA sequence
Length = 560
Score = 264 bits (133), Expect = 6e-068
Identities = 307/365 (84%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 502 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 443
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 442 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 383
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 382 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 323
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 322 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 263
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 262 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 203
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 202 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 143
Query: 484 tatgg 488
|||||
Sbjct: 142 tatgg 138
>gb|CF279059.1|CF279059 14ETL--05-D15.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--05-D15, mRNA sequence
Length = 485
Score = 264 bits (133), Expect = 6e-068
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 76 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 135
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 136 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 195
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 196 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 255
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 256 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 315
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 316 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 375
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 376 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 435
Query: 484 tatgg 488
|||||
Sbjct: 436 tatgg 440
>gb|CF324908.1|CF324908 JMT1--01-M19.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--01-M19, mRNA sequence
Length = 558
Score = 264 bits (133), Expect = 6e-068
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 53 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 112
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 113 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 172
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 173 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 232
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 233 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 292
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 293 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 352
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 353 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 412
Query: 484 tatgg 488
|||||
Sbjct: 413 tatgg 417
>gb|CF330929.1|CF330929 NACL--06-N15.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--06-N15, mRNA sequence
Length = 581
Score = 264 bits (133), Expect = 6e-068
Identities = 256/297 (86%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 76 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 135
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 136 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 195
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 196 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 255
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 256 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 315
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccag 420
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 316 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccag 372
>gb|CO435690.1|CO435690 OsMR756 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 835
Score = 264 bits (133), Expect = 6e-068
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 115 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 174
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 175 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 234
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 235 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 294
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 295 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 354
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 355 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 414
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 415 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 474
Query: 484 tatgg 488
|||||
Sbjct: 475 tatgg 479
>gb|CV723496.1|CV723496 root--03-M03.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--03-M03, mRNA sequence
Length = 493
Score = 264 bits (133), Expect = 6e-068
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 37 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 96
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 97 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 156
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 157 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 216
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 217 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 276
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 277 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 336
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 337 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 396
Query: 484 tatgg 488
|||||
Sbjct: 397 tatgg 401
>gb|CV729006.1|CV729006 FLO--01-K01.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-K01,
mRNA sequence
Length = 492
Score = 264 bits (133), Expect = 6e-068
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 79 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 138
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 139 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 198
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 199 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 258
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 259 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 318
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 319 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 378
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 379 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 438
Query: 484 tatgg 488
|||||
Sbjct: 439 tatgg 443
>gb|BP184732.1|BP184732 BP184732 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 14YPG026, mRNA
sequence
Length = 662
Score = 264 bits (133), Expect = 6e-068
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 51 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 110
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 111 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 170
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 171 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 230
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 231 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 290
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 291 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 350
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 351 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 410
Query: 484 tatgg 488
|||||
Sbjct: 411 tatgg 415
>dbj|AB011262.1| Oryza sativa (japonica cultivar-group) mRNA for nuclear transport
factor 2 (NTF2), complete cds
Length = 661
Score = 264 bits (133), Expect = 6e-068
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 64 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 123
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 124 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 183
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 184 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 243
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 244 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 303
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 304 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 363
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 364 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 423
Query: 484 tatgg 488
|||||
Sbjct: 424 tatgg 428
>dbj|AK065141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002A14, full
insert sequence
Length = 671
Score = 264 bits (133), Expect = 6e-068
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 74 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 133
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 134 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 193
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 194 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 253
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 254 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 313
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 314 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 373
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 374 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 433
Query: 484 tatgg 488
|||||
Sbjct: 434 tatgg 438
>dbj|AK119730.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-H12, full
insert sequence
Length = 672
Score = 264 bits (133), Expect = 6e-068
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 75 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 134
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 135 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 194
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 195 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 254
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 255 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 314
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 315 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 374
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 375 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 434
Query: 484 tatgg 488
|||||
Sbjct: 435 tatgg 439
>ref|XM_483494.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 671
Score = 264 bits (133), Expect = 6e-068
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 74 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 133
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 134 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 193
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 194 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 253
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 254 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 313
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 314 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 373
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 374 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 433
Query: 484 tatgg 488
|||||
Sbjct: 434 tatgg 438
>gb|CV725400.1|CV725400 14Salt--02-H12.g1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--02-H12, mRNA sequence
Length = 486
Score = 256 bits (129), Expect = 2e-065
Identities = 306/365 (83%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 76 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 135
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct: 136 aaccggccggcgctggtgtctctgtaccaggacgggtccatgctcaccttcgagggccag 195
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 196 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 255
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 256 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 315
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 316 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 375
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 376 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 435
Query: 484 tatgg 488
|||||
Sbjct: 436 tatgg 440
>gb|CV725668.1|CV725668 14Salt--02-N23.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--02-N23, mRNA sequence
Length = 489
Score = 248 bits (125), Expect = 4e-063
Identities = 305/365 (83%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 74 atggacgcggacgcggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 133
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||
Sbjct: 134 aaccggccggcgctggtgtctttgtaccaggacgggtccatgctcaccttcgagggccag 193
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 194 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 253
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 254 caccacgacatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtc 313
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggca 423
||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 314 ttcgtctccggatccctccgcaccggccccgacgagcaccccctcaagttctcccagatg 373
Query: 424 ttccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaac 483
||||| |||| || || | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 374 ttccagctgcttcccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaac 433
Query: 484 tatgg 488
|||||
Sbjct: 434 tatgg 438
>gb|AU160916.1|AU160916 AU160916 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52444, mRNA sequence
Length = 595
Score = 234 bits (118), Expect = 6e-059
Identities = 283/338 (83%)
Strand = Plus / Plus
Query: 151 ttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctgtat 210
|||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 8 ttcgtggagcactactaccggacgttcgacacgaaccggccggcgctggtgtcgctgtac 67
Query: 211 caggagacctccatgctcaccttcgagggccagaagttccagggcccatccgccattgcc 270
||||| |||||||||||||||||||||||| |||| | ||| | ||||||| |||
Sbjct: 68 caggacgggtccatgctcaccttcgagggccagcagtttctcggcgccgccgccatcgcc 127
Query: 271 ggcaagctcggatctcttcccttccaggcctgcgagcaccagatcgtcaccgtcgactgc 330
||||||||||| || || |||||| | ||| | ||| | ||| |||||||||||||
Sbjct: 128 ggcaagctcggctccctccccttcgcgcagtgccaccacgacatcaacaccgtcgactgc 187
Query: 331 cagccgtcggggccccagggaggcatgctcgtcttcgtctccggttccatccgcaccggc 390
|||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||
Sbjct: 188 cagccgtcggggccgcagggcggcatgctcgtcttcgtctccggatccctccgcaccggc 247
Query: 391 cccgaggagcaccccatcaagttctcccaggcattccatttgctgccggcagctgggtcc 450
||||| ||||||||| |||||||||||||| ||||| |||| || || | || |
Sbjct: 248 cccgacgagcaccccctcaagttctcccagatgttccagctgcttcccgctggaggcaac 307
Query: 451 ttcttcgtgcagaatgacatgttccgcctgaactatgg 488
|||| |||||||| ||||||||||| |||||||||||
Sbjct: 308 ttctatgtgcagaacgacatgttccgtctgaactatgg 345
>gb|CV729007.1|CV729007 FLO--01-K01.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-K01,
mRNA sequence
Length = 492
Score = 228 bits (115), Expect = 4e-057
Identities = 282/338 (83%)
Strand = Plus / Minus
Query: 157 gagcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctgtatcaggag 216
|||||||||||||||||||||||||| ||||| ||||||||||| |||||| |||||
Sbjct: 492 gagcactactaccggacgttcgacacgaaccggccggcgctggtgtcgctgtaccaggac 433
Query: 217 acctccatgctcaccttcgagggccagaagttccagggcccatccgccattgccggcaag 276
|||||||||||||||||||||||| |||| | ||| | ||||||| |||||||||
Sbjct: 432 gggtccatgctcaccttcgagggccagcagtttctnggcgccgccgccatcgccggcaag 373
Query: 277 ctcggatctcttcccttccaggcctgcgagcaccagatcgtcaccgtcgactgccagccg 336
||||| || || |||||| | ||| | ||| | ||| |||||||||||||||||||
Sbjct: 372 ctcggctccctccccttcgcgcagtgccaccacgacatcaacaccgtcgactgccagccg 313
Query: 337 tcggggccccagggaggcatgctcgtcttcgtctccggttccatccgcaccggccccgag 396
|||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 312 tcggggccgcagggcggcatgctcgtcttcgtctccggatccctccgcaccggccccgac 253
Query: 397 gagcaccccatcaagttctcccaggcattccatttgctgccggcagctgggtccttcttc 456
||||||||| |||||||||||||| ||||| |||| || || | || |||||
Sbjct: 252 gagcaccccctcaagttctcccagatgttccagctgcttcccgctggaggcaacttctat 193
Query: 457 gtgcagaatgacatgttccgcctgaactatggctaaaa 494
|||||||| ||||||||||| ||||||||||| |||||
Sbjct: 192 gtgcagaacgacatgttccgtctgaactatggttaaaa 155
>gb|D23112.1|D23112 RICC2215A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2215_1A, mRNA sequence
Length = 339
Score = 188 bits (95), Expect = 3e-045
Identities = 234/278 (84%), Gaps = 2/278 (0%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 64 atggacgcggacg-ggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 122
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 123 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 182
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | ||| | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 183 cagtttctcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 242
Query: 304 gagcaccagatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtc 363
| ||| | ||| ||||||||||||||||| ||||||||| || || ||||||||||||
Sbjct: 243 caccacgacatcaacaccgtcgactgccagcngtcggggccgca-ggcggcatgctcgtc 301
Query: 364 ttcgtctccggttccatccgcaccggccccgaggagca 401
||||||| ||| ||| |||||||||||||||| |||||
Sbjct: 302 ttcgtcttcggatccctccgcaccggccccgacgagca 339
>gb|AU164238.1|AU164238 AU164238 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20874, mRNA sequence
Length = 523
Score = 176 bits (89), Expect = 1e-041
Identities = 224/269 (83%)
Strand = Plus / Plus
Query: 220 tccatgctcaccttcgagggccagaagttccagggcccatccgccattgccggcaagctc 279
|||||||||||||||||||||||| |||| | ||| | ||||||| ||||||||||||
Sbjct: 7 tccatgctcaccttcgagggccagcagtttctcggcgccgccgccatcgccggcaagctc 66
Query: 280 ggatctcttcccttccaggcctgcgagcaccagatcgtcaccgtcgactgccagccgtcg 339
|| || || |||||| | ||| | ||| | ||| ||||||||||||||||||||||
Sbjct: 67 ggctccctccccttcgcgcagtgccaccacgacatcaacaccgtcgactgccagccgtcg 126
Query: 340 gggccccagggaggcatgctcgtcttcgtctccggttccatccgcaccggccccgaggag 399
||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct: 127 gggccgcagggcggcatgctcgtcttcgtctccggatccctccgcaccggccccgacgag 186
Query: 400 caccccatcaagttctcccaggcattccatttgctgccggcagctgggtccttcttcgtg 459
|||||| |||||||||||||| ||||| |||| || || | || ||||| |||
Sbjct: 187 caccccctcaagttctcccagatgttccagctgcttcccgctggaggcaacttctatgtg 246
Query: 460 cagaatgacatgttccgcctgaactatgg 488
||||| ||||||||||| |||||||||||
Sbjct: 247 cagaacgacatgttccgtctgaactatgg 275
>gb|AU182504.1|AU182504 AU182504 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3358, mRNA sequence
Length = 444
Score = 176 bits (89), Expect = 1e-041
Identities = 224/269 (83%)
Strand = Plus / Plus
Query: 220 tccatgctcaccttcgagggccagaagttccagggcccatccgccattgccggcaagctc 279
|||||||||||||||||||||||| |||| | ||| | ||||||| ||||||||||||
Sbjct: 14 tccatgctcaccttcgagggccagcagtttctcggcgccgccgccatcgccggcaagctc 73
Query: 280 ggatctcttcccttccaggcctgcgagcaccagatcgtcaccgtcgactgccagccgtcg 339
|| || || |||||| | ||| | ||| | ||| ||||||||||||||||||||||
Sbjct: 74 ggctccctccccttcgcgcagtgccaccacgacatcaacaccgtcgactgccagccgtcg 133
Query: 340 gggccccagggaggcatgctcgtcttcgtctccggttccatccgcaccggccccgaggag 399
||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct: 134 gggccgcagggcggcatgctcgtcttcgtctccggatccctccgcaccggccccgacgag 193
Query: 400 caccccatcaagttctcccaggcattccatttgctgccggcagctgggtccttcttcgtg 459
|||||| |||||||||||||| ||||| |||| || || | || ||||| |||
Sbjct: 194 caccccctcaagttctcccagatgttccagctgcttcccgctggaggcaacttctatgtg 253
Query: 460 cagaatgacatgttccgcctgaactatgg 488
||||| ||||||||||| |||||||||||
Sbjct: 254 cagaacgacatgttccgtctgaactatgg 282
>gb|C96652.1|C96652 C96652 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10529_8Z, mRNA sequence
Length = 531
Score = 168 bits (85), Expect = 3e-039
Identities = 173/201 (86%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 220 tccatgctcaccttcgagggccagaagttccagggcccatccgccattgccggcaagctc 279
|||||||||||||||||||||||| |||| | ||| | ||||||| ||||||||||||
Sbjct: 12 tccatgctcaccttcgagggccagcagtttctcggcgccgccgccatcgccggcaagctc 71
Query: 280 ggatctcttcccttccaggcctgcgagcaccagatcgtcaccgtcgactgccagccgtcg 339
|| || || |||||| | ||| | ||| | ||| ||||||||||||||||||||||
Sbjct: 72 ggctccct-cccttcgcgcagtgccaccacgacatcaacaccgtcgactgccagccgtcg 130
Query: 340 gggccccagggaggcatgctcgtcttcgtctccggttccatccgcaccggccccgaggag 399
||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct: 131 gggccgcagggcggcatgctcgtcttcgtctccggatccctccgcaccggccccgacgag 190
Query: 400 caccccatcaagttctcccag 420
|||||| ||||||||||||||
Sbjct: 191 caccccctcaagttctcccag 211
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 457 gtgcagaatgacatgttccgcctgaactatgg 488
|||||||| ||||||||||| |||||||||||
Sbjct: 249 gtgcagaacgacatgttccgtctgaactatgg 280
>gb|AU182748.1|AU182748 AU182748 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30190, mRNA sequence
Length = 444
Score = 157 bits (79), Expect = 1e-035
Identities = 148/171 (86%)
Strand = Plus / Plus
Query: 318 caccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccggttc 377
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct: 56 caccgtcgactgccagccgtcggggccgcagggcggcatgctcgtcttcgtctccggatc 115
Query: 378 catccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgctgcc 437
| |||||||||||||||| ||||||||| |||||||||||||| ||||| |||| ||
Sbjct: 116 cctccgcaccggccccgacgagcaccccctcaagttctcccagatgttccagctgcttcc 175
Query: 438 ggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatgg 488
|| | || ||||| |||||||| ||||||||||| |||||||||||
Sbjct: 176 cgctggaggcaacttctatgtgcagaacgacatgttccgtctgaactatgg 226
>gb|C74676.1|C74676 C74676 Rice cDNA from immature leaf including apical meristem Oryza
sativa (japonica cultivar-group) cDNA clone E50229_1A,
mRNA sequence
Length = 469
Score = 151 bits (76), Expect = 7e-034
Identities = 147/171 (85%)
Strand = Plus / Plus
Query: 318 caccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccggttc 377
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct: 76 caccgtcgactgccagcngtcggggccgcagggcggcatgctcgtcttcgtctccggatc 135
Query: 378 catccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgctgcc 437
| |||||||||||||||| ||||||||| |||||||||||||| ||||| |||| ||
Sbjct: 136 cctccgcaccggccccgacgagcaccccctcaagttctcccagatgttccagctgcttcc 195
Query: 438 ggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatgg 488
|| | || ||||| |||||||| ||||||||||| |||||||||||
Sbjct: 196 cgctggaggcaacttctatgtgcagaacgacatgttccgtctgaactatgg 246
>gb|C29178.1|C29178 C29178 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C63964_1A, mRNA sequence
Length = 336
Score = 147 bits (74), Expect = 1e-032
Identities = 215/261 (82%), Gaps = 2/261 (0%)
Strand = Plus / Plus
Query: 142 gcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtg 201
||||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 69 gcgaaggcgttcgtggagcactactaccggacgttcgacacgaaccggccggcgctggtg 128
Query: 202 gggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagggcccatcc 261
|||||| ||||| |||||||||||||||||||||||| |||| ||| | |
Sbjct: 129 tcgctgtaccaggacgggtccatgctcaccttcgagggccagcagtttntcggcgccgnc 188
Query: 262 gccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccagatcgtcacc 321
||||| |||||||||||||| || || |||||| | ||| | ||| | ||| ||||
Sbjct: 189 gccatcgccggcaagctcggntccctccccttcgcgcagtgccaccacgacatcaacacc 248
Query: 322 gtcgactgccagccgtcggggccccagggaggca-tgctcgtcttcgtctccggttccat 380
||||||||||||| ||||||||| || || |||| ||||||| ||||| ||||||||| |
Sbjct: 249 gtcgactgccagcngtcggggccgca-ggcggcagtgctcgttttcgtntccggttccct 307
Query: 381 ccgcaccggccccgaggagca 401
||||||||| ||||| |||||
Sbjct: 308 ccgcaccggacccgacgagca 328
>gb|AU223403.1|AU223403 AU223403 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6274, mRNA sequence
Length = 450
Score = 145 bits (73), Expect = 4e-032
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 318 caccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccggttc 377
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 16 caccgtcgactgccagccgtcggggccgcagggcggcatgctcgtcttcgtntccggatc 75
Query: 378 catccgcaccggccccgaggagcaccccatcaagttctcccag 420
| |||||||||||||||| ||||||||| ||||||| ||||||
Sbjct: 76 cctccgcaccggccccgacgagcaccccctcaagttntcccag 118
>gb|CF330930.1|CF330930 NACL--06-N15.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--06-N15, mRNA sequence
Length = 613
Score = 141 bits (71), Expect = 6e-031
Identities = 170/203 (83%)
Strand = Plus / Minus
Query: 191 cggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttcc 250
||||||||||| |||||| ||||| |||||||||||||||||||||||| |||| |
Sbjct: 603 cggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccagcagtttc 544
Query: 251 agggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcacc 310
||| | ||||||| |||||||||||||| || || |||||| | ||| | |||
Sbjct: 543 tcggcgccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgccaccacg 484
Query: 311 agatcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtct 370
| ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 483 acatcaacaccgtcgactgccagccgtcggggccgcagggcggcatgctcgtcttcgtct 424
Query: 371 ccggttccatccgcaccggcccc 393
|||| ||| ||||||||||||||
Sbjct: 423 ccggatccctccgcaccggcccc 401
>gb|C25303.1|C25303 C25303 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S5863_1A, mRNA sequence
Length = 317
Score = 135 bits (68), Expect = 4e-029
Identities = 217/264 (82%), Gaps = 3/264 (1%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 56 atggacgcggacg-ggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 114
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| | |||| ||||| ||||||||||||||||||||||||
Sbjct: 115 aaccggccggcgctggtgtcgntgtaccaggacgggtccatgctcaccttcgagggccag 174
Query: 244 aagttccagggcccatccgccattgccggcaagctcggatctcttcccttccaggcctgc 303
|||| | || | ||||||| |||||||||||||| || || |||||| | |||
Sbjct: 175 cagtttctcggngccgccgccatcgccggcaagctcggctccctccccttcgcgcagtgc 234
Query: 304 gagcaccagatcgtcaccgtcgactgccag-ccgtcggggccccagggaggcatgctcgt 362
| ||| | ||| |||||||||||||||| ||||||||| || || |||||||||||
Sbjct: 235 caccacgacatcaacaccgtcgactgccagtntgtcggggccgca-ggcggcatgctcgt 293
Query: 363 cttcgtctccggttccatccgcac 386
||||||||||| ||| |||||||
Sbjct: 294 tttcgtctccggntccctccgcac 317
>gb|CF279058.1|CF279058 14ETL--05-D15.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--05-D15, mRNA sequence
Length = 475
Score = 135 bits (68), Expect = 4e-029
Identities = 148/172 (86%), Gaps = 2/172 (1%)
Strand = Plus / Minus
Query: 318 caccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccggttc 377
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct: 419 caccgtcgactgccagccgtcggggccgcagggcggcatgctcgtcttcgtctccggatc 360
Query: 378 catccgcaccggccccgagga-gcaccccatcaagttctcccaggcattccatttgctgc 436
| ||||||||||||| ||||| ||||||| |||||||||||||| ||||| |||| |
Sbjct: 359 cctccgcaccggcccggaggaagcacccc-tcaagttctcccagatgttccagctgcttc 301
Query: 437 cggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatgg 488
| || | || ||||| |||||||| ||||||||||| |||||||||||
Sbjct: 300 ccgctggaggcaacttctatgtgcagaacgacatgttccgtctgaactatgg 249
>gb|AU030420.1|AU030420 AU030420 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E51038_1A, mRNA sequence
Length = 320
Score = 131 bits (66), Expect = 6e-028
Identities = 197/237 (83%), Gaps = 3/237 (1%)
Strand = Plus / Plus
Query: 139 gtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctg 198
|||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 74 gtggcgaaggcgttcgtggagcactactaccggacgttcgacacgaaccggccggcgctg 133
Query: 199 gtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagggccca 258
||| |||||| ||||| |||||||||||||||||||||||| |||| | ||| |
Sbjct: 134 gtgtcgctgtaccaggacgggtccatgctcaccttcgagggccagcagtttctcggcgc- 192
Query: 259 tccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccagatcgtc 318
|||||| |||||||||||||| || || |||||| | ||| | ||| | ||| |
Sbjct: 193 cgcgccatcgccggcaagctcggctccctccccttcgcgcagtgccaccacgacatcaac 252
Query: 319 accgtcgac-tgccagccgtcggggccccagggaggcatgctcgtcttcgtctccgg 374
||||||||| ||||||||||||||| | || || |||||||||||||||||||||||
Sbjct: 253 accgtcgacttgccagccgtcggggncgca-ggcggcatgctcgtcttcgtctccgg 308
>gb|C73195.1|C73195 C73195 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3358_1A, mRNA sequence
Length = 438
Score = 121 bits (61), Expect = 6e-025
Identities = 110/125 (88%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 42 atggacgcggacg-ggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 100
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 101 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 160
Query: 244 aagtt 248
||||
Sbjct: 161 cagtt 165
Score = 111 bits (56), Expect = 6e-022
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 318 caccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccggttc 377
||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||
Sbjct: 234 caccgtcgactgccagccgtcggggccgcaggcggcaatgctcgttttcgtctccggttc 293
Query: 378 catccgcaccggccccgaggagcaccccatcaagtt 413
| |||||||||||||||| ||||| ||| |||||||
Sbjct: 294 cctccgcaccggccccgacgagcaacccctcaagtt 329
Score = 44.1 bits (22), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 457 gtgcagaatgacatgttccgcctgaactatggctaa 492
|||||||| || |||||||| ||||||||||| |||
Sbjct: 373 gtgcagaacganatgttccgtctgaactatggntaa 408
>gb|C73872.1|C73872 C73872 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20874_1A, mRNA sequence
Length = 398
Score = 121 bits (61), Expect = 6e-025
Identities = 110/125 (88%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 70 atggacgcggacg-ggtggcgaaggcgttcgtggagcactactaccggacgttcgacacg 128
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggccag 243
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 129 aaccggccggcgctggtgtcgctgtaccaggacgggtccatgctcaccttcgagggccag 188
Query: 244 aagtt 248
||||
Sbjct: 189 cagtt 193
>gb|D22224.1|D22224 RICC10529A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10529_1A, mRNA sequence
Length = 203
Score = 113 bits (57), Expect = 1e-022
Identities = 104/119 (87%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactaccggacgttcgacacc 183
|||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 34 atggacgcggacg-ggtggcgaaggcnttcgtggagcactactaccggacgttcgacacg 92
Query: 184 aaccgcgcggcgctggtggggctgtatcaggagacctccatgctcaccttcgagggcca 242
||||| |||||||||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 93 aaccggccggcgctggtntcgctgtaccaggacgggtccatgctcaccttcgagggcca 151
>gb|C27634.1|C27634 C27634 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52444_1A, mRNA sequence
Length = 292
Score = 109 bits (55), Expect = 2e-021
Identities = 94/107 (87%)
Strand = Plus / Plus
Query: 142 gcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtg 201
||||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 86 gcgaaggcgttcgtggagcactactaccggacgttcgacacgaaccggccggcgctggtg 145
Query: 202 gggctgtatcaggagacctccatgctcaccttcgagggccagaagtt 248
|||||| ||||| |||||||||||||||||||||||| ||||
Sbjct: 146 tcgctgtaccaggacgggtccatgctcaccttcgagggccagcagtt 192
Score = 50.1 bits (25), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 318 caccgtcgactgccagccgtcggggccccagg 349
||||||||||||||||||||||| ||| ||||
Sbjct: 261 caccgtcgactgccagccgtcggngccgcagg 292
>gb|AU058367.1|AU058367 AU058367 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E50696_2Z, mRNA
sequence
Length = 581
Score = 101 bits (51), Expect = 5e-019
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 319 accgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccggttcc 378
|||||||| |||||||| |||||||| || || ||||| |||| ||||||||||| |||
Sbjct: 156 accgtcgattgccagccntcggggccgcanggcngcatgntcgtnttcgtctccggatcc 215
Query: 379 atccgcaccggccccgaggagcaccccatcaagttctcccag 420
||||| ||||||||| |||| |||| ||||||||||||||
Sbjct: 216 ntccgcnccggccccgncgagcnccccctcaagttctcccag 257
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 457 gtgcagaatgacatgttccgcctgaactatgg 488
|||||||| ||||||||||| |||||||||||
Sbjct: 295 gtgcagaacgacatgttccgtctgaactatgg 326
>gb|C25402.1|C25402 C25402 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S6274_1A, mRNA sequence
Length = 363
Score = 95.6 bits (48), Expect = 3e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 142 gcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtg 201
||||| || ||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 72 gcgaaggcgttcgtngagcactactaccggacgttcgacacgaaccagccggcgctggtg 131
Query: 202 gggctgtatcaggagacctccatgctcaccttcgagggccagaagtt 248
|||||| ||||| |||||||||||||||||||||||| ||||
Sbjct: 132 tcgctgtaccaggacgggtccatgctcaccttcgagggccagcagtt 178
Score = 87.7 bits (44), Expect = 8e-015
Identities = 90/104 (86%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 318 caccgtcgactgccagccgtcggggccccagggag-gcatgctcgtcttcgtctccggtt 376
||||||||||||||||||||||||||| |||||| | | |||||||||||||||| |
Sbjct: 247 caccgtcgactgccagccgtcggggccgcagggattgnct--tcgtcttcgtctccggat 304
Query: 377 ccatccgcaccggccccgaggagcaccccatcaagttctcccag 420
|| | |||||||||||||| ||||| ||| ||||||||| ||||
Sbjct: 305 ccctncgcaccggccccgacgagcancccctcaagttcttccag 348
>gb|C27469.1|C27469 C27469 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C51959_1A, mRNA sequence
Length = 259
Score = 85.7 bits (43), Expect = 3e-014
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 142 gcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtg 201
||||| || |||| ||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct: 29 gcgaaggcnttcgaggagcactactaccggacgttcgacacgaaccggccgncgctggtg 88
Query: 202 gggctgtatcaggagacctccatgctcaccttcgagggccagaagtt 248
||| || ||| | |||||||||||||||||||||||| ||||
Sbjct: 89 tcgctntaccagnacgggtccatgctcaccttcgagggccagcagtt 135
Score = 54.0 bits (27), Expect = 1e-004
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 318 caccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccgg 374
||||||||||||||||| ||||||| | || || || |||||||| |||||||||||
Sbjct: 204 caccgtcgactgccagcngtcggggncgca-ggcgggatgctcgttttcgtctccgg 259
>gb|AU184876.1|AU184876 AU184876 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10757, mRNA sequence
Length = 448
Score = 77.8 bits (39), Expect = 8e-012
Identities = 82/96 (85%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 318 caccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccggttc 377
|||||| |||| ||| ||||||||||| ||||| |||||||| ||||| || ||||| ||
Sbjct: 22 caccgtngacttccaaccgtcggggccgcagggcggcatgctngtctttgtttccggatc 81
Query: 378 catccgcaccggccccgaggagcaccccatcaagtt 413
| ||||| |||| ||||| ||||||||| |||||||
Sbjct: 82 cctccgc-ccggncccgacgagcaccccctcaagtt 116
>gb|CF335336.1|CF335336 JMT--04-P15.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--04-P15, mRNA sequence
Length = 487
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgct 197
|||||||||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 238 gccttcgtggagtactactaccagacgttcgacaccaaccgcgccgcgct 287
>gb|CV725859.1|CV725859 14Salt--03-D02.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--03-D02, mRNA sequence
Length = 532
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgct 197
|||||||||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 201 gccttcgtggagtactactaccagacgttcgacaccaaccgcgccgcgct 250
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 450 cttcttcgtgcagaatgacat 470
|||||||||||||||||||||
Sbjct: 509 cttcttcgtgcagaatgacat 529
>gb|CV727494.1|CV727494 14Salt--05-K16.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--05-K16, mRNA sequence
Length = 489
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgct 197
|||||||||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 259 gccttcgtggagtactactaccagacgttcgacaccaaccgcgccgcgct 308
>gb|CV728272.1|CV728272 14Salt--06-O09.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--06-O09, mRNA sequence
Length = 531
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgct 197
|||||||||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 277 gccttcgtggagtactactaccagacgttcgacaccaaccgcgccgcgct 326
>dbj|AK073030.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144D17, full
insert sequence
Length = 754
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgct 197
|||||||||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 172 gccttcgtggagtactactaccagacgttcgacaccaaccgcgccgcgct 221
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 450 cttcttcgtgcagaatgacatgttccgcctgaactatggcta 491
||||||||||||||||||||| ||||| || ||||| |||||
Sbjct: 480 cttcttcgtgcagaatgacatattccggctcaactacggcta 521
>dbj|AK098941.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013046E12, full
insert sequence
Length = 729
Score = 75.8 bits (38), Expect = 3e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgct 197
|||||||||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 167 gccttcgtggagtactactaccagacgttcgacaccaaccgcgccgcgct 216
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 450 cttcttcgtgcagaatgacatgttccgcctgaactatggcta 491
||||||||||||||||||||| ||||| || ||||| |||||
Sbjct: 475 cttcttcgtgcagaatgacatattccggctcaactacggcta 516
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,973,873
Number of Sequences: 438736
Number of extensions: 1973873
Number of successful extensions: 61202
Number of sequences better than 0.5: 72
Number of HSP's better than 0.5 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59866
Number of HSP's gapped (non-prelim): 1270
length of query: 767
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 746
effective length of database: 2,791,206,460
effective search space: 2082240019160
effective search space used: 2082240019160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)