BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441599.2.1
(755 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AQ331023.1|AQ331023 nbxb0048H11f CUGI Rice BAC Library O... 210 8e-052
dbj|AP005529.3| Oryza sativa (japonica cultivar-group) geno... 210 8e-052
gb|AACV01018908.1| Oryza sativa (japonica cultivar-group) c... 210 8e-052
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 210 8e-052
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 210 8e-052
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 210 8e-052
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 210 8e-052
gb|AU184875.1|AU184875 AU184875 Rice cDNA from young root O... 208 3e-051
gb|CA755322.1|CA755322 BR030018000_PLATE_A02_9_007.ab1 OA O... 208 3e-051
gb|CF279059.1|CF279059 14ETL--05-D15.g1 Rice etiolated leaf... 208 3e-051
gb|CF324908.1|CF324908 JMT1--01-M19.g1 AtJMT-overexpressing... 208 3e-051
gb|CF330929.1|CF330929 NACL--06-N15.b1 Rice callus plasmid ... 208 3e-051
gb|CO435690.1|CO435690 OsMR756 5MT resistant rice mutant cD... 208 3e-051
gb|CV723496.1|CV723496 root--03-M03.g1 Rice root lambda pha... 208 3e-051
gb|CV729006.1|CV729006 FLO--01-K01.b1 Rice flower lambda ph... 208 3e-051
gb|BP184732.1|BP184732 BP184732 pNS rice panicle cDNA, flow... 208 3e-051
dbj|AB011262.1| Oryza sativa (japonica cultivar-group) mRNA... 208 3e-051
dbj|AK065141.1| Oryza sativa (japonica cultivar-group) cDNA... 208 3e-051
dbj|AK119730.1| Oryza sativa (japonica cultivar-group) cDNA... 208 3e-051
ref|XM_483494.1| Oryza sativa (japonica cultivar-group), mRNA 208 3e-051
gb|CV725400.1|CV725400 14Salt--02-H12.g1 Salt treated rice ... 200 8e-049
gb|AU160916.1|AU160916 AU160916 Rice callus Oryza sativa (j... 192 2e-046
gb|CV725668.1|CV725668 14Salt--02-N23.b1 Salt treated rice ... 192 2e-046
gb|CV729007.1|CV729007 FLO--01-K01.g1 Rice flower lambda ph... 178 3e-042
gb|AU164238.1|AU164238 AU164238 Rice panicle (longer than 1... 145 4e-032
gb|AU182504.1|AU182504 AU182504 Rice panicle at flowering s... 145 4e-032
gb|D23112.1|D23112 RICC2215A Rice callus Oryza sativa (japo... 137 1e-029
gb|C96652.1|C96652 C96652 Rice callus Oryza sativa (japonic... 133 2e-028
gb|AU182748.1|AU182748 AU182748 Rice panicle shorter than 3... 133 2e-028
gb|C74676.1|C74676 C74676 Rice cDNA from immature leaf incl... 127 9e-027
gb|AU223403.1|AU223403 AU223403 Rice shoot Oryza sativa (ja... 121 6e-025
gb|CF279058.1|CF279058 14ETL--05-D15.b1 Rice etiolated leaf... 111 6e-022
gb|CF330930.1|CF330930 NACL--06-N15.g1 Rice callus plasmid ... 109 2e-021
gb|C29178.1|C29178 C29178 Rice callus cDNA Oryza sativa (ja... 107 9e-021
gb|C25303.1|C25303 C25303 Rice shoot Oryza sativa (japonica... 101 5e-019
gb|C27634.1|C27634 C27634 Rice callus cDNA Oryza sativa (ja... 101 5e-019
gb|C73195.1|C73195 C73195 Rice panicle at flowering stage O... 101 5e-019
gb|C73872.1|C73872 C73872 Rice panicle (longer than 10cm) O... 101 5e-019
gb|D22224.1|D22224 RICC10529A Rice callus Oryza sativa (jap... 101 5e-019
gb|AU030420.1|AU030420 AU030420 Rice cDNA from immature lea... 101 5e-019
gb|C25402.1|C25402 C25402 Rice shoot Oryza sativa (japonica... 90 2e-015
gb|AU058367.1|AU058367 AU058367 Oryza sativa Nipponbare imm... 86 3e-014
gb|C27469.1|C27469 C27469 Rice callus cDNA Oryza sativa (ja... 78 8e-012
gb|AU182187.1|AU182187 AU182187 Rice callus (2001) Oryza sa... 66 3e-008
gb|AU030421.1|AU030421 AU030421 Rice cDNA from immature lea... 64 1e-007
gb|AU223319.1|AU223319 AU223319 Rice shoot Oryza sativa (ja... 62 5e-007
gb|CF335336.1|CF335336 JMT--04-P15.g1 AtJMT-overexpressing ... 62 5e-007
gb|CV725859.1|CV725859 14Salt--03-D02.b1 Salt treated rice ... 62 5e-007
gb|CV727494.1|CV727494 14Salt--05-K16.b1 Salt treated rice ... 62 5e-007
gb|CV728272.1|CV728272 14Salt--06-O09.b1 Salt treated rice ... 62 5e-007
dbj|AK073030.1| Oryza sativa (japonica cultivar-group) cDNA... 62 5e-007
dbj|AK098941.1| Oryza sativa (japonica cultivar-group) cDNA... 62 5e-007
dbj|AP003345.3| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
gb|AACV01002475.1| Oryza sativa (japonica cultivar-group) c... 62 5e-007
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
ref|NM_190845.1| Oryza sativa (japonica cultivar-group), p... 62 5e-007
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 62 5e-007
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
gb|CV725339.1|CV725339 14Salt--02-F24.g1 Salt treated rice ... 56 3e-005
gb|AU184876.1|AU184876 AU184876 Rice cDNA from young root O... 54 1e-004
gb|CV725860.1|CV725860 14Salt--03-D02.g1 Salt treated rice ... 52 4e-004
gb|CV728273.1|CV728273 14Salt--06-O09.g1 Salt treated rice ... 52 4e-004
gb|CF335335.1|CF335335 JMT--04-P15.b1 AtJMT-overexpressing ... 44 0.11
gb|CV727495.1|CV727495 14Salt--05-K16.g1 Salt treated rice ... 44 0.11
>gb|AQ331023.1|AQ331023 nbxb0048H11f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0048H11f, DNA sequence
Length = 750
Score = 210 bits (106), Expect = 8e-052
Identities = 250/298 (83%)
Strand = Plus / Minus
Query: 325 cctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaaga 384
||||||||||||||| ||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct: 332 cctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggagacgaaga 273
Query: 385 cgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctgatgctcgc 444
|||||||||| ||||| || ||||| |||||||||||||||||| ||| | || | ||
Sbjct: 272 cgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcgtggtggc 213
Query: 445 aggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctggaacttct 504
| | ||| ||||| || |||||||||||||| ||||||| | ||| | |||| ||
Sbjct: 212 actgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgagaaactgct 153
Query: 505 ggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttgg 564
|||||||||||||||||||||| |||||||||||| |||||||||| ||||| |
Sbjct: 152 ggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggccggttcg 93
Query: 565 tgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcagggtccat 622
|||||||||| |||||||| ||||||||||| |||||||| |||||||| | ||||||
Sbjct: 92 tgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcgtccat 35
>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0702E04
Length = 190948
Score = 210 bits (106), Expect = 8e-052
Identities = 250/298 (83%)
Strand = Plus / Plus
Query: 325 cctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaaga 384
||||||||||||||| ||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct: 78556 cctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggagacgaaga 78615
Query: 385 cgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctgatgctcgc 444
|||||||||| ||||| || ||||| |||||||||||||||||| ||| | || | ||
Sbjct: 78616 cgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcgtggtggc 78675
Query: 445 aggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctggaacttct 504
| | ||| ||||| || |||||||||||||| ||||||| | ||| | |||| ||
Sbjct: 78676 actgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgagaaactgct 78735
Query: 505 ggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttgg 564
|||||||||||||||||||||| |||||||||||| |||||||||| ||||| |
Sbjct: 78736 ggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggccggttcg 78795
Query: 565 tgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcagggtccat 622
|||||||||| |||||||| ||||||||||| |||||||| |||||||| | ||||||
Sbjct: 78796 tgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcgtccat 78853
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 258 ccatagttcaggcggaacatgtcattctgcac 289
||||||||||| ||||||||||| ||||||||
Sbjct: 77079 ccatagttcagacggaacatgtcgttctgcac 77110
>gb|AACV01018908.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018908, whole
genome shotgun sequence
Length = 27271
Score = 210 bits (106), Expect = 8e-052
Identities = 250/298 (83%)
Strand = Plus / Minus
Query: 325 cctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaaga 384
||||||||||||||| ||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct: 24007 cctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggagacgaaga 23948
Query: 385 cgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctgatgctcgc 444
|||||||||| ||||| || ||||| |||||||||||||||||| ||| | || | ||
Sbjct: 23947 cgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcgtggtggc 23888
Query: 445 aggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctggaacttct 504
| | ||| ||||| || |||||||||||||| ||||||| | ||| | |||| ||
Sbjct: 23887 actgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgagaaactgct 23828
Query: 505 ggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttgg 564
|||||||||||||||||||||| |||||||||||| |||||||||| ||||| |
Sbjct: 23827 ggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggccggttcg 23768
Query: 565 tgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcagggtccat 622
|||||||||| |||||||| ||||||||||| |||||||| |||||||| | ||||||
Sbjct: 23767 tgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcgtccat 23710
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcac 289
||||||||||| ||||||||||| ||||||||
Sbjct: 25484 ccatagttcagacggaacatgtcgttctgcac 25453
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 210 bits (106), Expect = 8e-052
Identities = 250/298 (83%)
Strand = Plus / Plus
Query: 325 cctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaaga 384
||||||||||||||| ||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct: 26291602 cctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggagacgaaga 26291661
Query: 385 cgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctgatgctcgc 444
|||||||||| ||||| || ||||| |||||||||||||||||| ||| | || | ||
Sbjct: 26291662 cgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcgtggtggc 26291721
Query: 445 aggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctggaacttct 504
| | ||| ||||| || |||||||||||||| ||||||| | ||| | |||| ||
Sbjct: 26291722 actgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgagaaactgct 26291781
Query: 505 ggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttgg 564
|||||||||||||||||||||| |||||||||||| |||||||||| ||||| |
Sbjct: 26291782 ggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggccggttcg 26291841
Query: 565 tgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcagggtccat 622
|||||||||| |||||||| ||||||||||| |||||||| |||||||| | ||||||
Sbjct: 26291842 tgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcgtccat 26291899
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 258 ccatagttcaggcggaacatgtcattctgcac 289
||||||||||| ||||||||||| ||||||||
Sbjct: 26290125 ccatagttcagacggaacatgtcgttctgcac 26290156
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 210 bits (106), Expect = 8e-052
Identities = 250/298 (83%)
Strand = Plus / Plus
Query: 325 cctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaaga 384
||||||||||||||| ||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct: 17753118 cctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggagacgaaga 17753177
Query: 385 cgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctgatgctcgc 444
|||||||||| ||||| || ||||| |||||||||||||||||| ||| | || | ||
Sbjct: 17753178 cgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcgtggtggc 17753237
Query: 445 aggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctggaacttct 504
| | ||| ||||| || |||||||||||||| ||||||| | ||| | |||| ||
Sbjct: 17753238 actgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgagaaactgct 17753297
Query: 505 ggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttgg 564
|||||||||||||||||||||| |||||||||||| |||||||||| ||||| |
Sbjct: 17753298 ggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggccggttcg 17753357
Query: 565 tgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcagggtccat 622
|||||||||| |||||||| ||||||||||| |||||||| |||||||| | ||||||
Sbjct: 17753358 tgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcgtccat 17753415
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 258 ccatagttcaggcggaacatgtcattctgcac 289
||||||||||| ||||||||||| ||||||||
Sbjct: 17751641 ccatagttcagacggaacatgtcgttctgcac 17751672
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 210 bits (106), Expect = 8e-052
Identities = 250/298 (83%)
Strand = Plus / Plus
Query: 325 cctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaaga 384
||||||||||||||| ||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct: 25355124 cctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggagacgaaga 25355183
Query: 385 cgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctgatgctcgc 444
|||||||||| ||||| || ||||| |||||||||||||||||| ||| | || | ||
Sbjct: 25355184 cgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcgtggtggc 25355243
Query: 445 aggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctggaacttct 504
| | ||| ||||| || |||||||||||||| ||||||| | ||| | |||| ||
Sbjct: 25355244 actgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgagaaactgct 25355303
Query: 505 ggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttgg 564
|||||||||||||||||||||| |||||||||||| |||||||||| ||||| |
Sbjct: 25355304 ggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggccggttcg 25355363
Query: 565 tgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcagggtccat 622
|||||||||| |||||||| ||||||||||| |||||||| |||||||| | ||||||
Sbjct: 25355364 tgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcgtccat 25355421
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 258 ccatagttcaggcggaacatgtcattctgcac 289
||||||||||| ||||||||||| ||||||||
Sbjct: 25353647 ccatagttcagacggaacatgtcgttctgcac 25353678
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 210 bits (106), Expect = 8e-052
Identities = 250/298 (83%)
Strand = Plus / Plus
Query: 325 cctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaaga 384
||||||||||||||| ||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct: 26529689 cctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggagacgaaga 26529748
Query: 385 cgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctgatgctcgc 444
|||||||||| ||||| || ||||| |||||||||||||||||| ||| | || | ||
Sbjct: 26529749 cgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcgtggtggc 26529808
Query: 445 aggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctggaacttct 504
| | ||| ||||| || |||||||||||||| ||||||| | ||| | |||| ||
Sbjct: 26529809 actgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgagaaactgct 26529868
Query: 505 ggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttgg 564
|||||||||||||||||||||| |||||||||||| |||||||||| ||||| |
Sbjct: 26529869 ggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggccggttcg 26529928
Query: 565 tgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcagggtccat 622
|||||||||| |||||||| ||||||||||| |||||||| |||||||| | ||||||
Sbjct: 26529929 tgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcgtccat 26529986
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 258 ccatagttcaggcggaacatgtcattctgcac 289
||||||||||| ||||||||||| ||||||||
Sbjct: 26528212 ccatagttcagacggaacatgtcgttctgcac 26528243
>gb|AU184875.1|AU184875 AU184875 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10757, mRNA sequence
Length = 455
Score = 208 bits (105), Expect = 3e-051
Identities = 300/365 (82%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 413 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 354
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 353 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 294
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 293 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 234
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 233 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 174
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 173 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 114
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 113 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 54
Query: 618 tccat 622
|||||
Sbjct: 53 tccat 49
>gb|CA755322.1|CA755322 BR030018000_PLATE_A02_9_007.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030018000_PLATE_A02_9_007.ab1 similar to Nuclear
transport factor 2 (NTF-2) gi|5360221|dbj|BAA81910.1|
(AB011262) nuclear transport factor 2 (NTF2) [Oryza
sativa (japonica cultivar-group)], mRNA sequence
Length = 560
Score = 208 bits (105), Expect = 3e-051
Identities = 300/365 (82%)
Strand = Plus / Plus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 138 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 197
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 198 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 257
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 258 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 317
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 318 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 377
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 378 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 437
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 438 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 497
Query: 618 tccat 622
|||||
Sbjct: 498 tccat 502
>gb|CF279059.1|CF279059 14ETL--05-D15.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--05-D15, mRNA sequence
Length = 485
Score = 208 bits (105), Expect = 3e-051
Identities = 300/365 (82%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 440 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 381
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 380 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 321
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 320 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 261
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 260 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 201
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 200 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 141
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 140 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 81
Query: 618 tccat 622
|||||
Sbjct: 80 tccat 76
>gb|CF324908.1|CF324908 JMT1--01-M19.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--01-M19, mRNA sequence
Length = 558
Score = 208 bits (105), Expect = 3e-051
Identities = 300/365 (82%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 417 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 358
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 357 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 298
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 297 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 238
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 237 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 178
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 177 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 118
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 117 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 58
Query: 618 tccat 622
|||||
Sbjct: 57 tccat 53
>gb|CF330929.1|CF330929 NACL--06-N15.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--06-N15, mRNA sequence
Length = 581
Score = 208 bits (105), Expect = 3e-051
Identities = 249/297 (83%)
Strand = Plus / Minus
Query: 326 ctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaagac 385
|||||||||||||| ||||||||| |||||||||||||| | ||| ||||||||||||||
Sbjct: 372 ctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggagacgaagac 313
Query: 386 gagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctgatgctcgca 445
||||||||| ||||| || ||||| |||||||||||||||||| ||| | || | |||
Sbjct: 312 gagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcgtggtggca 253
Query: 446 ggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctggaacttctg 505
| ||| ||||| || |||||||||||||| ||||||| | ||| | |||| |||
Sbjct: 252 ctgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgagaaactgctg 193
Query: 506 gccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttggt 565
||||||||||||||||||||| |||||||||||| |||||||||| ||||| ||
Sbjct: 192 gccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggccggttcgt 133
Query: 566 gtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcagggtccat 622
||||||||| |||||||| ||||||||||| |||||||| |||||||| | ||||||
Sbjct: 132 gtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcgtccat 76
>gb|CO435690.1|CO435690 OsMR756 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 835
Score = 208 bits (105), Expect = 3e-051
Identities = 300/365 (82%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 479 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 420
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 419 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 360
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 359 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 300
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 299 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 240
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 239 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 180
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 179 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 120
Query: 618 tccat 622
|||||
Sbjct: 119 tccat 115
>gb|CV723496.1|CV723496 root--03-M03.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--03-M03, mRNA sequence
Length = 493
Score = 208 bits (105), Expect = 3e-051
Identities = 300/365 (82%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 401 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 342
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 341 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 282
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 281 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 222
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 221 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 162
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 161 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 102
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 101 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 42
Query: 618 tccat 622
|||||
Sbjct: 41 tccat 37
>gb|CV729006.1|CV729006 FLO--01-K01.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-K01,
mRNA sequence
Length = 492
Score = 208 bits (105), Expect = 3e-051
Identities = 300/365 (82%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 443 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 384
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 383 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 324
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 323 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 264
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 263 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 204
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 203 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 144
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 143 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 84
Query: 618 tccat 622
|||||
Sbjct: 83 tccat 79
>gb|BP184732.1|BP184732 BP184732 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 14YPG026, mRNA
sequence
Length = 662
Score = 208 bits (105), Expect = 3e-051
Identities = 300/365 (82%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 415 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 356
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 355 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 296
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 295 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 236
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 235 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 176
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 175 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 116
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 115 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 56
Query: 618 tccat 622
|||||
Sbjct: 55 tccat 51
>dbj|AB011262.1| Oryza sativa (japonica cultivar-group) mRNA for nuclear transport
factor 2 (NTF2), complete cds
Length = 661
Score = 208 bits (105), Expect = 3e-051
Identities = 300/365 (82%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 428 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 369
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 368 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 309
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 308 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 249
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 248 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 189
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 188 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 129
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 128 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 69
Query: 618 tccat 622
|||||
Sbjct: 68 tccat 64
>dbj|AK065141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002A14, full
insert sequence
Length = 671
Score = 208 bits (105), Expect = 3e-051
Identities = 300/365 (82%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 438 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 379
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 378 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 319
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 318 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 259
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 258 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 199
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 198 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 139
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 138 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 79
Query: 618 tccat 622
|||||
Sbjct: 78 tccat 74
>dbj|AK119730.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-H12, full
insert sequence
Length = 672
Score = 208 bits (105), Expect = 3e-051
Identities = 300/365 (82%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 439 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 380
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 379 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 320
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 319 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 260
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 259 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 200
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 199 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 140
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 139 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 80
Query: 618 tccat 622
|||||
Sbjct: 79 tccat 75
>ref|XM_483494.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 671
Score = 208 bits (105), Expect = 3e-051
Identities = 300/365 (82%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 438 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 379
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 378 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 319
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 318 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 259
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 258 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 199
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 198 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 139
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 138 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 79
Query: 618 tccat 622
|||||
Sbjct: 78 tccat 74
>gb|CV725400.1|CV725400 14Salt--02-H12.g1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--02-H12, mRNA sequence
Length = 486
Score = 200 bits (101), Expect = 8e-049
Identities = 299/365 (81%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 440 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 381
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 380 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 321
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 320 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 261
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 260 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 201
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 200 aactgctggccctcgaaggtgagcatggacccgtcctggtacagagacaccagcgccggc 141
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 140 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 81
Query: 618 tccat 622
|||||
Sbjct: 80 tccat 76
>gb|AU160916.1|AU160916 AU160916 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52444, mRNA sequence
Length = 595
Score = 192 bits (97), Expect = 2e-046
Identities = 283/345 (82%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 345 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 286
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 285 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 226
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 225 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 166
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 165 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 106
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 105 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 46
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttc 602
||||| ||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 45 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttc 1
>gb|CV725668.1|CV725668 14Salt--02-N23.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--02-N23, mRNA sequence
Length = 489
Score = 192 bits (97), Expect = 2e-046
Identities = 298/365 (81%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 438 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 379
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 378 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 319
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 318 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 259
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 258 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 199
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 198 aactgctggccctcgaaggtgagcatggacccgtcctggtacaaagacaccagcgccggc 139
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcaggg 617
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| | |
Sbjct: 138 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgccaccgcgtccgcg 79
Query: 618 tccat 622
|||||
Sbjct: 78 tccat 74
>gb|CV729007.1|CV729007 FLO--01-K01.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-K01,
mRNA sequence
Length = 492
Score = 178 bits (90), Expect = 3e-042
Identities = 275/337 (81%)
Strand = Plus / Plus
Query: 253 tttagccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggca 312
|||| ||||||||||| ||||||||||| |||||||| ||||| || | || || |
Sbjct: 156 tttaaccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaa 215
Query: 313 gcaaatggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaac 372
||| ||||| |||||||||||||| ||||||||| |||||||||||||| | ||| |
Sbjct: 216 gcagctggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatc 275
Query: 373 cggagacgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacga 432
|||||||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||
Sbjct: 276 cggagacgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttga 335
Query: 433 tctgatgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggc 492
| | || | ||| | ||| ||||| || |||||||||||||| ||||||| | ||
Sbjct: 336 tgtcgtggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgc 395
Query: 493 cctggaacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcg 552
| | |||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 396 cnagaaactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcg 455
Query: 553 ccgcgcggttggtgtcgaacgttcggtagtaatgctc 589
||| ||||| ||||||||||| |||||||| |||||
Sbjct: 456 ccggccggttcgtgtcgaacgtccggtagtagtgctc 492
>gb|AU164238.1|AU164238 AU164238 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20874, mRNA sequence
Length = 523
Score = 145 bits (73), Expect = 4e-032
Identities = 220/269 (81%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 275 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 216
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 215 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 156
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 155 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 96
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 95 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 36
Query: 498 aacttctggccctcgaaggtgagcatgga 526
|||| ||||||||||||||||||||||||
Sbjct: 35 aactgctggccctcgaaggtgagcatgga 7
>gb|AU182504.1|AU182504 AU182504 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3358, mRNA sequence
Length = 444
Score = 145 bits (73), Expect = 4e-032
Identities = 220/269 (81%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 282 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 223
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 222 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 163
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctga 437
||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 162 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtgttgatgtcg 103
Query: 438 tgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctgg 497
|| | ||| | ||| ||||| || |||||||||||||| ||||||| | ||| |
Sbjct: 102 tggtggcactgcgcgaaggggagggagccgagcttgccggcgatggcggcggcgccgaga 43
Query: 498 aacttctggccctcgaaggtgagcatgga 526
|||| ||||||||||||||||||||||||
Sbjct: 42 aactgctggccctcgaaggtgagcatgga 14
>gb|D23112.1|D23112 RICC2215A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2215_1A, mRNA sequence
Length = 339
Score = 137 bits (69), Expect = 1e-029
Identities = 213/260 (81%), Gaps = 1/260 (0%)
Strand = Plus / Minus
Query: 345 tgctcctcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctgggga 404
||||| |||||||||||||| | ||| ||| ||||||||||||||||||| || || ||
Sbjct: 339 tgctcgtcggggccggtgcggagggatccgaagacgaagacgagcatgccgcc-tgcggc 281
Query: 405 cccgatggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagat 464
||||| ||||||||||||||||| ||| | || | ||| | ||| ||||| ||
Sbjct: 280 cccgacngctggcagtcgacggtgttgatgtcgtggtggcactgcgcgaaggggagggag 221
Query: 465 ccgagcttgccggcaatggcggacgggccctggaacttctggccctcgaaggtgagcatg 524
|||||||||||||| ||||||| | ||| | |||| ||||||||||||||||||||||
Sbjct: 220 ccgagcttgccggcgatggcggcggcgccgagaaactgctggccctcgaaggtgagcatg 161
Query: 525 gaggtctcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttcggtagtaa 584
|| |||||||||||| |||||||||| ||||| ||||||||||| ||||||||
Sbjct: 160 gacccgtcctggtacagcgacaccagcgccggccggttcgtgtcgaacgtccggtagtag 101
Query: 585 tgctccacgaaggccttcgc 604
||||||||||| ||||||||
Sbjct: 100 tgctccacgaacgccttcgc 81
>gb|C96652.1|C96652 C96652 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10529_8Z, mRNA sequence
Length = 531
Score = 133 bits (67), Expect = 2e-028
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 326 ctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaagac 385
|||||||||||||| ||||||||| |||||||||||||| | ||| ||||||||||||||
Sbjct: 211 ctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggagacgaagac 152
Query: 386 gagcatgcctccctggggacccgatggctggcagtcgacggtg 428
||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 151 gagcatgccgccctgcggccccgacggctggcagtcgacggtg 109
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 454 aagggagagatccgagcttgccggcaatggcggacgggccctggaacttctggccctcga 513
||||||| || |||||||||||||| ||||||| | ||| | |||| |||||||||||
Sbjct: 84 aagggagggagccgagcttgccggcgatggcggcggcgccgagaaactgctggccctcga 25
Query: 514 aggtgagcatgga 526
|||||||||||||
Sbjct: 24 aggtgagcatgga 12
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcac 289
||||||||||| ||||||||||| ||||||||
Sbjct: 280 ccatagttcagacggaacatgtcgttctgcac 249
>gb|AU182748.1|AU182748 AU182748 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30190, mRNA sequence
Length = 444
Score = 133 bits (67), Expect = 2e-028
Identities = 145/171 (84%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 226 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 167
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 166 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 107
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtg 428
||||||||||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 106 acgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtg 56
>gb|C74676.1|C74676 C74676 Rice cDNA from immature leaf including apical meristem Oryza
sativa (japonica cultivar-group) cDNA clone E50229_1A,
mRNA sequence
Length = 469
Score = 127 bits (64), Expect = 9e-027
Identities = 144/171 (84%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 246 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 187
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||||||||||| | ||| ||||||
Sbjct: 186 tggaacatctgggagaacttgagggggtgctcgtcggggccggtgcggagggatccggag 127
Query: 378 acgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtg 428
||||||||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 126 acgaagacgagcatgccgccctgcggccccgacngctggcagtcgacggtg 76
>gb|AU223403.1|AU223403 AU223403 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6274, mRNA sequence
Length = 450
Score = 121 bits (61), Expect = 6e-025
Identities = 92/103 (89%)
Strand = Plus / Minus
Query: 326 ctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaagac 385
|||||| ||||||| ||||||||| |||||||||||||| | ||| ||||| ||||||||
Sbjct: 118 ctggganaacttgagggggtgctcgtcggggccggtgcggagggatccgganacgaagac 59
Query: 386 gagcatgcctccctggggacccgatggctggcagtcgacggtg 428
||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 58 gagcatgccgccctgcggccccgacggctggcagtcgacggtg 16
>gb|CF279058.1|CF279058 14ETL--05-D15.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--05-D15, mRNA sequence
Length = 475
Score = 111 bits (56), Expect = 6e-022
Identities = 145/172 (84%), Gaps = 2/172 (1%)
Strand = Plus / Plus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 249 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 308
Query: 318 tggaatgcctgggagaacttgatggggtgc-tcctcggggccggtgcgtatggaaccgga 376
||||| |||||||||||||| ||||||| ||||| ||||||||||| | ||| |||||
Sbjct: 309 tggaacatctgggagaacttga-ggggtgcttcctccgggccggtgcggagggatccgga 367
Query: 377 gacgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtg 428
|||||||||||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 368 gacgaagacgagcatgccgccctgcggccccgacggctggcagtcgacggtg 419
>gb|CF330930.1|CF330930 NACL--06-N15.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--06-N15, mRNA sequence
Length = 613
Score = 109 bits (55), Expect = 2e-021
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 353 ggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgatgg 412
|||||||||||| | ||| ||||||||||||||||||||||| ||||| || ||||| ||
Sbjct: 401 ggggccggtgcggagggatccggagacgaagacgagcatgccgccctgcggccccgacgg 460
Query: 413 ctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagctt 472
|||||||||||||||| ||| | || | ||| | ||| ||||| || ||||||||
Sbjct: 461 ctggcagtcgacggtgttgatgtcgtggtggcactgcgcgaaggggagggagccgagctt 520
Query: 473 gccggcaatggcggacgggccctggaacttctggccctcgaaggtgagcatggaggtctc 532
|||||| ||||||| | ||| | |||| |||||||||||||||||||||||| ||
Sbjct: 521 gccggcgatggcggcggcgccgagaaactgctggccctcgaaggtgagcatggacccgtc 580
Query: 533 ctggtacagcccaaccagcgccg 555
|||||||||| ||||||||||
Sbjct: 581 ctggtacagcgacaccagcgccg 603
>gb|C29178.1|C29178 C29178 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C63964_1A, mRNA sequence
Length = 336
Score = 107 bits (54), Expect = 9e-021
Identities = 210/261 (80%), Gaps = 2/261 (0%)
Strand = Plus / Minus
Query: 345 tgctcctcggggccggtgcgtatggaaccggagacgaagacgagca-tgcctccctgggg 403
||||| ||||| |||||||| | ||||||||| ||||| ||||||| |||| || || ||
Sbjct: 328 tgctcgtcgggtccggtgcggagggaaccgganacgaaaacgagcactgccgcc-tgcgg 270
Query: 404 acccgatggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagaga 463
||||| ||||||||||||||||| ||| | || | ||| | ||| ||||| ||
Sbjct: 269 ccccgacngctggcagtcgacggtgttgatgtcgtggtggcactgcgcgaaggggaggga 210
Query: 464 tccgagcttgccggcaatggcggacgggccctggaacttctggccctcgaaggtgagcat 523
|||||||||||||| |||||| | ||| |||| |||||||||||||||||||||
Sbjct: 209 nccgagcttgccggcgatggcgncggcgccganaaactgctggccctcgaaggtgagcat 150
Query: 524 ggaggtctcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttcggtagta 583
||| |||||||||||| |||||||||| ||||| ||||||||||| ||||||||
Sbjct: 149 ggacccgtcctggtacagcgacaccagcgccggccggttcgtgtcgaacgtccggtagta 90
Query: 584 atgctccacgaaggccttcgc 604
||||||||||| ||||||||
Sbjct: 89 gtgctccacgaacgccttcgc 69
>gb|C25303.1|C25303 C25303 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S5863_1A, mRNA sequence
Length = 317
Score = 101 bits (51), Expect = 5e-019
Identities = 124/149 (83%)
Strand = Plus / Minus
Query: 456 gggagagatccgagcttgccggcaatggcggacgggccctggaacttctggccctcgaag 515
||||| || |||||||||||||| ||||||| | || | |||| |||||||||||||
Sbjct: 221 gggagggagccgagcttgccggcgatggcggcggcnccgagaaactgctggccctcgaag 162
Query: 516 gtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgtt 575
||||||||||| |||||||||| | |||||||||| ||||| |||||||||||
Sbjct: 161 gtgagcatggacccgtcctggtacancgacaccagcgccggccggttcgtgtcgaacgtc 102
Query: 576 cggtagtaatgctccacgaaggccttcgc 604
|||||||| ||||||||||| ||||||||
Sbjct: 101 cggtagtagtgctccacgaacgccttcgc 73
>gb|C27634.1|C27634 C27634 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52444_1A, mRNA sequence
Length = 292
Score = 101 bits (51), Expect = 5e-019
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 192 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 133
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgc 604
||||| ||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 132 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgc 86
>gb|C73195.1|C73195 C73195 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3358_1A, mRNA sequence
Length = 438
Score = 101 bits (51), Expect = 5e-019
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 165 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 106
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgc 604
||||| ||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 105 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgc 59
Score = 87.7 bits (44), Expect = 8e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 333 aacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaagacgagcatg 392
||||||| ||| ||||| |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 329 aacttgaggggttgctcgtcggggccggtgcggagggaaccggagacgaaaacgagcatt 270
Query: 393 cctccctggggacccgatggctggcagtcgacggtg 428
| |||| || ||||| ||||||||||||||||||
Sbjct: 269 gccgcctgcggccccgacggctggcagtcgacggtg 234
Score = 44.1 bits (22), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 254 ttagccatagttcaggcggaacatgtcattctgcac 289
||| ||||||||||| |||||||| || ||||||||
Sbjct: 408 ttanccatagttcagacggaacatntcgttctgcac 373
>gb|C73872.1|C73872 C73872 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20874_1A, mRNA sequence
Length = 398
Score = 101 bits (51), Expect = 5e-019
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 193 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 134
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgc 604
||||| ||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 133 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgc 87
>gb|D22224.1|D22224 RICC10529A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10529_1A, mRNA sequence
Length = 203
Score = 101 bits (51), Expect = 5e-019
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 504 tggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttg 563
||||||||||||||||||||||| |||||||||||| |||||||||| |||||
Sbjct: 151 tggccctcgaaggtgagcatggacccgtcctggtacagcganaccagcgccggccggttc 92
Query: 564 gtgtcgaacgttcggtagtaatgctccacgaaggccttcgc 604
||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 91 gtgtcgaacgtccggtagtagtgctccacgaangccttcgc 51
>gb|AU030420.1|AU030420 AU030420 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E51038_1A, mRNA sequence
Length = 320
Score = 101 bits (51), Expect = 5e-019
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 183 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 124
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgc 604
||||| ||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 123 cggttcgtgtcgaacgtccggtagtagtgctccacgaacgccttcgc 77
>gb|C25402.1|C25402 C25402 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S6274_1A, mRNA sequence
Length = 363
Score = 89.7 bits (45), Expect = 2e-015
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 178 aactgctggccctcgaaggtgagcatggacccgtcctggtacagcgacaccagcgccggc 119
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgct 605
|||| ||||||||||| |||||||| ||||| ||||| |||||||||
Sbjct: 118 tggttcgtgtcgaacgtccggtagtagtgctcnacgaacgccttcgct 71
Score = 71.9 bits (36), Expect = 5e-010
Identities = 88/104 (84%), Gaps = 3/104 (2%)
Strand = Plus / Minus
Query: 326 ctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaagac 385
|||| ||||||||| ||| ||||| |||||||||||||| | ||| ||||||||||||||
Sbjct: 348 ctggaagaacttgaggggntgctcgtcggggccggtgcgnagggatccggagacgaagac 289
Query: 386 gagcatgcc-tccctggggacccgatggctggcagtcgacggtg 428
|| | | |||||| || ||||| ||||||||||||||||||
Sbjct: 288 ga--agncaatccctgcggccccgacggctggcagtcgacggtg 247
>gb|AU058367.1|AU058367 AU058367 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E50696_2Z, mRNA
sequence
Length = 581
Score = 85.7 bits (43), Expect = 3e-014
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 326 ctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaagac 385
|||||||||||||| |||| |||| ||||||||| ||| | ||| ||||||||||| ||
Sbjct: 257 ctgggagaacttgagggggngctcgncggggccggngcgganggatccggagacgaanac 198
Query: 386 gagcatgcctccctggggacccgatggctggcagtcgacggt 427
|| ||||| || || || ||||| |||||||| ||||||||
Sbjct: 197 gancatgcngccntgcggccccganggctggcaatcgacggt 156
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcac 289
||||||||||| ||||||||||| ||||||||
Sbjct: 326 ccatagttcagacggaacatgtcgttctgcac 295
>gb|C27469.1|C27469 C27469 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C51959_1A, mRNA sequence
Length = 259
Score = 77.8 bits (39), Expect = 8e-012
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 498 aacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcg 557
|||| |||||||||||||||||||||||| | |||||| ||| ||||||| ||
Sbjct: 135 aactgctggccctcgaaggtgagcatggacccgtnctggtanagcgacaccagcgncggc 76
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgc 604
||||| ||||||||||| |||||||| |||||| |||| ||||||||
Sbjct: 75 cggttcgtgtcgaacgtccggtagtagtgctcctcgaangccttcgc 29
>gb|AU182187.1|AU182187 AU182187 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C63964, mRNA sequence
Length = 284
Score = 65.9 bits (33), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 326 ctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacga 381
|||||| ||||||| ||||||||| |||||||||||||| | ||| ||||||||||
Sbjct: 56 ctggganaacttgagggggtgctcgtcggggccggtgcggagggatccggagacga 1
Score = 42.1 bits (21), Expect = 0.43
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcac 289
|||||||||| ||||||||||| ||||||||
Sbjct: 124 ccatagttcanacggaacatgtcgttctgcac 93
>gb|AU030421.1|AU030421 AU030421 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E51038_4Z, mRNA sequence
Length = 376
Score = 63.9 bits (32), Expect = 1e-007
Identities = 100/123 (81%)
Strand = Plus / Minus
Query: 258 ccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaa 317
||||||||||| ||||||||||| |||||||| ||||| || | || || ||||
Sbjct: 129 ccatagttcagacggaacatgtcgttctgcacatagaagttgcctccagcgggaagcagc 70
Query: 318 tggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggag 377
||||| |||||||||||||| ||||||||| |||||| ||||||| | ||| ||||||
Sbjct: 69 tggaacatctgggagaacttgagggggtgctcgtcggggncggtgcggagggatccggag 10
Query: 378 acg 380
|||
Sbjct: 9 acg 7
>gb|AU223319.1|AU223319 AU223319 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5863, mRNA sequence
Length = 383
Score = 61.9 bits (31), Expect = 5e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 326 ctgggagaacttgatggggtgctcctcggggccggtgcg 364
|||||||||||||| ||||||||| ||||||||||||||
Sbjct: 51 ctgggagaacttgagggggtgctcgtcggggccggtgcg 13
>gb|CF335336.1|CF335336 JMT--04-P15.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--04-P15, mRNA sequence
Length = 487
Score = 61.9 bits (31), Expect = 5e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 549 agcgccgcgcggttggtgtcgaacgttcggtagtaatgctccacgaaggcc 599
||||| |||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 287 agcgcggcgcggttggtgtcgaacgtctggtagtagtactccacgaaggcc 237
>gb|CV725859.1|CV725859 14Salt--03-D02.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--03-D02, mRNA sequence
Length = 532
Score = 61.9 bits (31), Expect = 5e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 549 agcgccgcgcggttggtgtcgaacgttcggtagtaatgctccacgaaggcc 599
||||| |||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 250 agcgcggcgcggttggtgtcgaacgtctggtagtagtactccacgaaggcc 200
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 276 atgtcattctgcacgaagaag 296
|||||||||||||||||||||
Sbjct: 529 atgtcattctgcacgaagaag 509
>gb|CV727494.1|CV727494 14Salt--05-K16.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--05-K16, mRNA sequence
Length = 489
Score = 61.9 bits (31), Expect = 5e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 549 agcgccgcgcggttggtgtcgaacgttcggtagtaatgctccacgaaggcc 599
||||| |||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 308 agcgcggcgcggttggtgtcgaacgtctggtagtagtactccacgaaggcc 258
>gb|CV728272.1|CV728272 14Salt--06-O09.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--06-O09, mRNA sequence
Length = 531
Score = 61.9 bits (31), Expect = 5e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 549 agcgccgcgcggttggtgtcgaacgttcggtagtaatgctccacgaaggcc 599
||||| |||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 326 agcgcggcgcggttggtgtcgaacgtctggtagtagtactccacgaaggcc 276
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,740,244
Number of Sequences: 438736
Number of extensions: 1740244
Number of successful extensions: 14752
Number of sequences better than 0.5: 66
Number of HSP's better than 0.5 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14301
Number of HSP's gapped (non-prelim): 388
length of query: 755
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 734
effective length of database: 2,791,206,460
effective search space: 2048745541640
effective search space used: 2048745541640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)