BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441100.2.1
(646 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU093219.1|AU093219 AU093219 Rice callus Oryza sativa (j... 60 2e-006
gb|CB662316.1|CB662316 OSJNEd06D11.r OSJNEd Oryza sativa (j... 60 2e-006
gb|CF303411.1|CF303411 ABF1--02-C23.g1 ABF3-overexpressing ... 60 2e-006
dbj|AB097461.1| Oryza sativa (japonica cultivar-group) mRNA... 60 2e-006
dbj|AK060820.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
dbj|AK065875.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
dbj|AK102657.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
gb|AACV01010487.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
ref|NT_107200.1| Oryza sativa (japonica cultivar-group) 60 2e-006
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromoso... 60 2e-006
emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromoso... 60 2e-006
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|AU030715.1|AU030715 AU030715 Rice cDNA from immature lea... 58 6e-006
gb|AU161687.1|AU161687 AU161687 Rice shoot Oryza sativa (ja... 58 6e-006
gb|CB000356.1|CB000356 S345U_G03 Rice cold stress germinati... 58 6e-006
gb|CB644396.1|CB644396 OSJNEb05J11.r OSJNEb Oryza sativa (j... 58 6e-006
gb|CB644460.1|CB644460 OSJNEb05K24.r OSJNEb Oryza sativa (j... 58 6e-006
gb|CB647321.1|CB647321 OSJNEb10D06.r OSJNEb Oryza sativa (j... 58 6e-006
gb|CB651859.1|CB651859 OSJNEb16P24.r OSJNEb Oryza sativa (j... 58 6e-006
gb|CB664608.1|CB664608 OSJNEd10G21.r OSJNEd Oryza sativa (j... 58 6e-006
gb|CB665596.1|CB665596 OSJNEd12B20.r OSJNEd Oryza sativa (j... 58 6e-006
gb|CB669708.1|CB669708 OSJNEe02G15.f OSJNEe Oryza sativa (j... 58 6e-006
gb|CB684149.1|CB684149 OSJNEf13G05.r OSJNEf Oryza sativa (j... 58 6e-006
gb|CF277393.1|CF277393 14ETL--02-O13.g1 Rice etiolated leaf... 58 6e-006
gb|CF293646.1|CF293646 30DGS--02-O12.g1 Rice leaf plasmid c... 58 6e-006
gb|CF308913.1|CF308913 ABF--02-O13.g1 ABF3-overexpressing t... 58 6e-006
gb|CF311850.1|CF311850 ABF--07-E21.b1 ABF3-overexpressing t... 58 6e-006
emb|AL607095.1|OSJN01003 Oryza sativa (japonica cultivar-gr... 58 6e-006
dbj|AB096864.1| Oryza sativa (japonica cultivar-group) OsUE... 58 6e-006
dbj|AP003829.2| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
dbj|AK059685.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AK065558.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AK099140.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AK099183.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AP004314.3| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
gb|AACV01015146.1| Oryza sativa (japonica cultivar-group) c... 58 6e-006
ref|XM_476598.1| Oryza sativa (japonica cultivar-group), mRNA 58 6e-006
ref|XM_506159.2| PREDICTED Oryza sativa (japonica cultivar-... 58 6e-006
ref|XM_507350.1| PREDICTED Oryza sativa (japonica cultivar-... 58 6e-006
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 58 6e-006
gb|CH401219.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
ref|XM_473906.1| Oryza sativa (japonica cultivar-group), p... 50 0.001
>gb|AU093219.1|AU093219 AU093219 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2907, mRNA sequence
Length = 705
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 285 tggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcag 334
>gb|CB662316.1|CB662316 OSJNEd06D11.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd06D11 3', mRNA sequence
Length = 716
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 427 tggaaatggcagaaagctcacccgaatgggtatggatcggcctgattcag 378
>gb|CF303411.1|CF303411 ABF1--02-C23.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--02-C23, mRNA sequence
Length = 516
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 274 tggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcag 323
>dbj|AB097461.1| Oryza sativa (japonica cultivar-group) mRNA for UDP-galactose
4-epimerase-like protein, complete cds
Length = 1390
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 1164 tggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcag 1213
>dbj|AK060820.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-A10, full
insert sequence
Length = 1788
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 1376 tggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcag 1425
>dbj|AK065875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013046D23, full
insert sequence
Length = 1822
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 1409 tggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcag 1458
>dbj|AK102657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101H12, full
insert sequence
Length = 2001
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 1412 tggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcag 1461
>gb|AACV01010487.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010487, whole
genome shotgun sequence
Length = 50489
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 28566 tggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcag 28517
>ref|NT_107200.1| Oryza sativa (japonica cultivar-group)
Length = 1324591
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 262216 tggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcag 262265
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 9172486 tggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcag 9172535
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 28316585 tggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcag 28316634
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23,
complete sequence
Length = 164805
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 18295 tggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcag 18344
>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08,
complete sequence
Length = 148860
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 137420 tggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcag 137469
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctgattcag 220
||||||||||||||||| |||||||| || |||||| | |||||||||||
Sbjct: 31440612 tggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcag 31440661
>gb|AU030715.1|AU030715 AU030715 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60140_2Z, mRNA sequence
Length = 641
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 169 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 228
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 229 ggtgactatgccgaagtgtacagcgatcc 257
>gb|AU161687.1|AU161687 AU161687 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4842, mRNA sequence
Length = 707
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 243 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 302
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 303 ggtgactatgccgaagtgtacagcgatcc 331
>gb|CB000356.1|CB000356 S345U_G03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 875
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 401 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 460
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 461 ggtgactatgccgaagtgtacagcgatcc 489
>gb|CB644396.1|CB644396 OSJNEb05J11.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb05J11 3', mRNA sequence
Length = 886
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 515 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 456
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 455 ggtgactatgccgaagtgtacagcgatcc 427
>gb|CB644460.1|CB644460 OSJNEb05K24.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb05K24 3', mRNA sequence
Length = 883
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 513 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 454
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 453 ggtgactatgccgaagtgtacagcgatcc 425
>gb|CB647321.1|CB647321 OSJNEb10D06.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10D06 3', mRNA sequence
Length = 781
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 454 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 395
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 394 ggtgactatgccgaagtgtacagcgatcc 366
>gb|CB651859.1|CB651859 OSJNEb16P24.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16P24 3', mRNA sequence
Length = 772
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 464 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 405
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 404 ggtgactatgccgaagtgtacagcgatcc 376
>gb|CB664608.1|CB664608 OSJNEd10G21.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd10G21 3', mRNA sequence
Length = 846
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 452 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 393
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 392 ggtgactatgccgaagtgtacagcgatcc 364
>gb|CB665596.1|CB665596 OSJNEd12B20.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12B20 3', mRNA sequence
Length = 765
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 439 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 380
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 379 ggtgactatgccgaagtgtacagcgatcc 351
>gb|CB669708.1|CB669708 OSJNEe02G15.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02G15 5', mRNA sequence
Length = 867
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 496 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 437
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 436 ggtgactatgccgaagtgtacagcgatcc 408
>gb|CB684149.1|CB684149 OSJNEf13G05.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf13G05 3', mRNA sequence
Length = 854
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 626 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 567
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 566 ggtgactatgccgaagtgtacagcgatcc 538
>gb|CF277393.1|CF277393 14ETL--02-O13.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-O13, mRNA sequence
Length = 544
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 482 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 423
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 422 ggtgactatgccgaagtgtacagcgatcc 394
>gb|CF293646.1|CF293646 30DGS--02-O12.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--02-O12, mRNA sequence
Length = 563
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 468 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 409
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 408 ggtgactatgccgaagtgtacagcgatcc 380
>gb|CF308913.1|CF308913 ABF--02-O13.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-O13, mRNA sequence
Length = 646
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 470 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 411
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 410 ggtgactatgccgaagtgtacagcgatcc 382
>gb|CF311850.1|CF311850 ABF--07-E21.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--07-E21, mRNA sequence
Length = 527
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 461 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 402
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 401 ggtgactatgccgaagtgtacagcgatcc 373
>emb|AL607095.1|OSJN01003 Oryza sativa (japonica cultivar-group) chromosome 7 clone OSJNBa0087K02,
*** SEQUENCING IN PROGRESS ***
Length = 164324
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 151650 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 151591
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 151590 ggtgactatgccgaagtgtacagcgatcc 151562
>dbj|AB096864.1| Oryza sativa (japonica cultivar-group) OsUEL-1 mRNA for UDP-galactose
4-epimerase-like protein, complete cds
Length = 1516
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 1142 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 1201
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 1202 ggtgactatgccgaagtgtacagcgatcc 1230
>dbj|AP003829.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1417_E01
Length = 118058
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 70850 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 70909
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 70910 ggtgactatgccgaagtgtacagcgatcc 70938
>dbj|AK059685.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-A06, full
insert sequence
Length = 1177
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 724 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 783
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 784 ggtgactatgccgaagtgtacagcgatcc 812
>dbj|AK065558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033B01, full
insert sequence
Length = 1822
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 1345 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 1404
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 1405 ggtgactatgccgaagtgtacagcgatcc 1433
>dbj|AK099140.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023053D14, full
insert sequence
Length = 1765
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 1320 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 1379
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 1380 ggtgactatgccgaagtgtacagcgatcc 1408
>dbj|AK099183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099C15, full
insert sequence
Length = 1761
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 1310 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 1369
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 1370 ggtgactatgccgaagtgtacagcgatcc 1398
>dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0495H05
Length = 205595
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 199354 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 199413
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 199414 ggtgactatgccgaagtgtacagcgatcc 199442
>gb|AACV01015146.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015146, whole
genome shotgun sequence
Length = 19731
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 8466 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 8525
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 8526 ggtgactatgccgaagtgtacagcgatcc 8554
>ref|XM_476598.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1761
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 1310 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 1369
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 1370 ggtgactatgccgaagtgtacagcgatcc 1398
>ref|XM_506159.2| PREDICTED Oryza sativa (japonica cultivar-group), P0495H05.61 mRNA
Length = 1824
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 1347 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 1406
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 1407 ggtgactatgccgaagtgtacagcgatcc 1435
>ref|XM_507350.1| PREDICTED Oryza sativa (japonica cultivar-group), P0495H05.61 mRNA
Length = 1765
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 1321 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 1380
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 1381 ggtgactatgccgaagtgtacagcgatcc 1409
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 2071129 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 2071188
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 2071189 ggtgactatgccgaagtgtacagcgatcc 2071217
>gb|CH401219.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000056
genomic scaffold, whole genome shotgun sequence
Length = 1384745
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 629991 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 630050
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 630051 ggtgactatgccgaagtgtacagcgatcc 630079
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 2061895 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 2061954
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 2061955 ggtgactatgccgaagtgtacagcgatcc 2061983
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 12 gaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagaccc 71
||||||||||||||||||||||||| | ||||||||||| || | | ||| |||||
Sbjct: 2115057 gaagcttgcaagaaggcaacaggagttgacatcaaggtcgactacttccctcgtcgaccc 2115116
Query: 72 ggagattatgccgaggtatacagcgatcc 100
|| || |||||||| || |||||||||||
Sbjct: 2115117 ggtgactatgccgaagtgtacagcgatcc 2115145
>ref|XM_473906.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1176
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatggaccagcctga 215
||||||||||||||||| |||||||| || |||||| | ||||||
Sbjct: 1132 tggaaatggcagaaagcacacccgaatgggtatggatcggcctga 1176
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 826,675
Number of Sequences: 438736
Number of extensions: 826675
Number of successful extensions: 3870
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3722
Number of HSP's gapped (non-prelim): 99
length of query: 646
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 625
effective length of database: 2,791,206,460
effective search space: 1744504037500
effective search space used: 1744504037500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)