BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441058.2.1
(1000 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070806.1| Oryza sativa (japonica cultivar-group) cDNA... 652 0.0
gb|CB656555.1|CB656555 OSJNEc11A17.r OSJNEc Oryza sativa (j... 622 e-176
gb|CB000314.1|CB000314 S345U_E08 Rice cold stress germinati... 613 e-173
gb|AU094422.1|AU094422 AU094422 Rice panicle at ripening st... 440 e-121
gb|AU164340.1|AU164340 AU164340 Rice panicle (between 3cm t... 313 1e-082
ref|XM_470594.1| Oryza sativa (japonica cultivar-group), p... 293 9e-077
gb|AU172896.1|AU172896 AU172896 Rice panicle (between 3cm t... 246 2e-062
gb|CA998312.1|CA998312 S345B_A04 Rice cold stress germinati... 238 5e-060
gb|AU182885.1|AU182885 AU182885 Rice panicle (between 3cm t... 232 3e-058
gb|AC105928.2| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
gb|AACV01006090.1| Oryza sativa (japonica cultivar-group) c... 157 1e-035
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 157 1e-035
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 157 1e-035
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
gb|AQ796728.1|AQ796728 nbxb0071C05f CUGI Rice BAC Library O... 145 5e-032
gb|CA999183.1|CA999183 S234O_D10 Rice cold stress germinati... 86 4e-014
>dbj|AK070806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072C15, full
insert sequence
Length = 1730
Score = 652 bits (329), Expect = 0.0
Identities = 524/589 (88%)
Strand = Plus / Plus
Query: 152 ttgaagctcttcattcagcaactaaggcgcttccaccagactttgttaggttagatcaag 211
||||||||||||| || ||||| || || |||||| |||||| |||||||||||||||||
Sbjct: 840 ttgaagctcttcactcggcaacaaaagcacttccagcagactatgttaggttagatcaag 899
Query: 212 acattttatcccctcgagcgggaaagaaggagctgtacacataccagacacttgatttct 271
| ||||||||||||| ||| ||||||||||| || |||||||||||||| || || || |
Sbjct: 900 atattttatcccctctagcaggaaagaaggaactttacacataccagactctcgactttt 959
Query: 272 gggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatctctctcagt 331
||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 960 gggaacagatcaagaccccagggatgtctttgagatgctctggcctatatctttctcagt 1019
Query: 332 ttcgccatacctctcctcatcttttagcctcaggagatggcaaaagaactgccactattg 391
| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 1020 tccgccatacctctcctcatcttttagcctcaggagatggcaaaaggagtgccactatta 1079
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
| || ||||| || || ||||| ||||| ||||| ||||| || ||||||| || || |
Sbjct: 1080 taggtgatgtgtacattcatccgtctgcaaaggttcatccaacagcaaagatcggtccta 1139
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||| |
Sbjct: 1140 atgtctcgatatcagcaaatgcacgtattggagctggagccaggcttattcattgcatta 1199
Query: 512 ttctggatgatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtgga 571
||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||
Sbjct: 1200 ttctggatgatgttgaaattatggagaatgcagttgttatacactcaattgtggggtgga 1259
Query: 572 aatcatccattggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaacttg 631
| ||| || | ||||||||||||||||||||||| |||||||| || || |||||||| |
Sbjct: 1260 agtcaaccgtaggaaaatggtcacgtgtacagggtgaaggtgaccataacgccaaactcg 1319
Query: 632 gcattactattcttggtgaagccgttgatgttgaagatgaagtagttgtagttaacagca 691
| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1320 gtatcacaattcttggtgaagccgttgatgttgaagatgaagtggttgtagttaacagca 1379
Query: 692 tcgtgctcccaaataaaactctcaatgtcagtgtccaagaggagatcat 740
| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1380 ttgtgctccccaataaaactctcaatgtcagtgtgcaagaggagatcat 1428
Score = 103 bits (52), Expect = 2e-019
Identities = 111/128 (86%), Gaps = 2/128 (1%)
Strand = Plus / Plus
Query: 1 gaactgctgcactatacggaaaagccggagacttt-gtgagtgatctcataaattgcgga 59
|||||| | ||||| || |||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 689 gaactgttacactacacagaaaagccagagacttttgtgagtgatctcataaattgtggg 748
Query: 60 ga-tatatatttactcccgatatccttagcgccattgaggatgtcttaaaacagaaaaaa 118
| ||||||||||| ||| ||||| ||| ||||| |||||||||||||||||||| |||
Sbjct: 749 gtctatatatttacacccaatatctttaatgccatcgaggatgtcttaaaacagaagaaa 808
Query: 119 gacagagc 126
||||||||
Sbjct: 809 gacagagc 816
>gb|CB656555.1|CB656555 OSJNEc11A17.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11A17 3', mRNA sequence
Length = 843
Score = 622 bits (314), Expect = e-176
Identities = 488/546 (89%)
Strand = Plus / Minus
Query: 195 tgttaggttagatcaagacattttatcccctcgagcgggaaagaaggagctgtacacata 254
|||||||||||||||||| ||||||||||||| ||| ||||||||||| || ||||||||
Sbjct: 842 tgttaggttagatcaagatattttatcccctctagcaggaaagaaggaactttacacata 783
Query: 255 ccagacacttgatttctgggaacagatcaaaaccccagggatgtctttgagatgctctgg 314
|||||| || || || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 782 ccagactctcgacttttgggaacagatcaagaccccagggatgtctttgagatgctctgg 723
Query: 315 gttatatctctctcagtttcgccatacctctcctcatcttttagcctcaggagatggcaa 374
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cctatatctttctcagttccgccatacctctcctcatcttttagcctcaggagatggcaa 663
Query: 375 aagaactgccactattgttggcgatgtctatatccatccatctgccaaggtgcatcctac 434
||| | |||||||||| | || ||||| || || ||||| ||||| ||||| ||||| ||
Sbjct: 662 aaggagtgccactattataggtgatgtgtacattcatccgtctgcaaaggttcatccaac 603
Query: 435 ttcaaagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccag 494
||||||| || || |||||||| ||||||||||||||||| |||||||||| |||||
Sbjct: 602 agcaaagatcggtcctaatgtctcgatatcagcaaatgcacgtattggagctggagccag 543
Query: 495 gcttatcaattgcataattctggatgatgttgaaattatggaaaatgctgttgttataca 554
|||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 542 gcttattcattgcattattctggatgatgttgaaattatggagaatgcagttgttataca 483
Query: 555 ttcaattgtagggtggaaatcatccattggaaaatggtcacgtgtacagggcgaaggtga 614
|||||||| |||||||| ||| || | ||||||||||||||||||||||| ||||||||
Sbjct: 482 ctcaattgtggggtggaagtcaaccgtaggaaaatggtcacgtgtacagggtgaaggtga 423
Query: 615 tcacaatgccaaacttggcattactattcttggtgaagccgttgatgttgaagatgaagt 674
|| || |||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 422 ccataacgccaaactcggtatcacaattcttggtgaagccgttgatgttgaagatgaagt 363
Query: 675 agttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtgtccaagagga 734
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 362 ggttgtagttaacagcattgtgctccccaataaaactctcaatgtcagtgtgcaagagga 303
Query: 735 gatcat 740
||||||
Sbjct: 302 gatcat 297
>gb|CB000314.1|CB000314 S345U_E08 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 824
Score = 613 bits (309), Expect = e-173
Identities = 504/569 (88%)
Strand = Plus / Plus
Query: 152 ttgaagctcttcattcagcaactaaggcgcttccaccagactttgttaggttagatcaag 211
||||||||||||| || ||||| || || |||||| |||||| |||||||||||||||||
Sbjct: 256 ttgaagctcttcactcggcaacaaaagcacttccagcagactatgttaggttagatcaag 315
Query: 212 acattttatcccctcgagcgggaaagaaggagctgtacacataccagacacttgatttct 271
| ||||||||||||| ||| ||||||||||| || |||||||||||||| || || || |
Sbjct: 316 atattttatcccctctagcaggaaagaaggaactttacacataccagactctcgactttt 375
Query: 272 gggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatctctctcagt 331
||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 376 gggaacagatcaagaccccagggatgtctttgagatgctctggcctatatctttctcagt 435
Query: 332 ttcgccatacctctcctcatcttttagcctcaggagatggcaaaagaactgccactattg 391
| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 436 tccgccatacctctcctcatcttttagcctcaggagatggcaaaaggagtgccactatta 495
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
| || ||||| || || ||||| ||||| ||||| ||||| || ||||||| || || |
Sbjct: 496 taggtgatgtgtacattcatccgtctgcaaaggttcatccaacagcaaagatcggtccta 555
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||| |
Sbjct: 556 atgtctcgatatcagcaaatgcacgtattggagctggagccaggcttattcattgcatta 615
Query: 512 ttctggatgatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtgga 571
||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||
Sbjct: 616 ttctggatgatgttgaaattatggagaatgcagttgttatacactcaattgtggggtgga 675
Query: 572 aatcatccattggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaacttg 631
| ||| || | ||||||||||||||||||||||| |||||||| || || |||||||| |
Sbjct: 676 agtcaaccgtaggaaaatggtcacgtgtacagggtgaaggtgaccataacgccaaactcg 735
Query: 632 gcattactattcttggtgaagccgttgatgttgaagatgaagtagttgtagttaacagca 691
| || || ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 736 gtatcacaattcttggtgaagccgttgatgttggagatgaagtggttgtagttaacagca 795
Query: 692 tcgtgctcccaaataaaactctcaatgtc 720
| |||||||| ||||||||||||||||||
Sbjct: 796 ttgtgctccccaataaaactctcaatgtc 824
Score = 103 bits (52), Expect = 2e-019
Identities = 111/128 (86%), Gaps = 2/128 (1%)
Strand = Plus / Plus
Query: 1 gaactgctgcactatacggaaaagccggagacttt-gtgagtgatctcataaattgcgga 59
|||||| | ||||| || |||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 105 gaactgttacactacacagaaaagccagagacttttgtgagtgatctcataaattgtggg 164
Query: 60 ga-tatatatttactcccgatatccttagcgccattgaggatgtcttaaaacagaaaaaa 118
| ||||||||||| ||| ||||| ||| ||||| |||||||||||||||||||| |||
Sbjct: 165 gtctatatatttacacccaatatctttaatgccatcgaggatgtcttaaaacagaagaaa 224
Query: 119 gacagagc 126
||||||||
Sbjct: 225 gacagagc 232
>gb|AU094422.1|AU094422 AU094422 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10645, mRNA sequence
Length = 673
Score = 440 bits (222), Expect = e-121
Identities = 369/417 (88%), Gaps = 1/417 (0%)
Strand = Plus / Plus
Query: 325 tctcagtttcgccatacctctcctcatcttttagcc-tcaggagatggcaaaagaactgc 383
||||||| ||||||||||||||||||||||||||| |||||||||| |||||| | |||
Sbjct: 4 tctcagtcccgccatacctctcctcatcttttagccntcaggagatgncaaaaggagtgc 63
Query: 384 cactattgttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagat 443
||||||| | || ||||| || || ||||| ||||| ||||| ||||| || |||||||
Sbjct: 64 cactattataggtgatgtgtacattcatccgtctgcaaaggttcatccaacagcaaagat 123
Query: 444 tggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaa 503
|| || |||||||| ||||||||||||||||| |||||||||| ||||||||||| |
Sbjct: 124 cggtcctaatgtctcgatatcagcaaatgcacgtattggagctggagccaggcttattca 183
Query: 504 ttgcataattctggatgatgttgaaattatggaaaatgctgttgttatacattcaattgt 563
|||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 184 ttgcattattctggatgatgttgaaattatggagaatgcagttgttatacactcaattgt 243
Query: 564 agggtggaaatcatccattggaaaatggtcacgtgtacagggcgaaggtgatcacaatgc 623
|||||||| ||| || | ||||||||||||||||||||||| |||||||| || || ||
Sbjct: 244 ggggtggaagtcaaccgtaggaaaatggtcacgtgtacagggtgaaggtgaccataacgc 303
Query: 624 caaacttggcattactattcttggtgaagccgttgatgttgaagatgaagtagttgtagt 683
|||||| || || || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 304 caaactcggtatcacaattcttggtgaagccgttgatgttgaagatgaagtggttgtagt 363
Query: 684 taacagcatcgtgctcccaaataaaactctcaatgtcagtgtccaagaggagatcat 740
||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 364 taacagcattgtgctccccaataaaactctcaatgtcagtgtgcaagaggagatcat 420
>gb|AU164340.1|AU164340 AU164340 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E40163, mRNA sequence
Length = 570
Score = 313 bits (158), Expect = 1e-082
Identities = 262/293 (89%), Gaps = 3/293 (1%)
Strand = Plus / Plus
Query: 451 aatgtctctatat-cagcaaatgcacgcgttggagctggtgccaggcttatcaattgcat 509
|||||||| |||| ||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 25 aatgtctcgatatacagcaaatgcacgtattggagctggagccaggcttattcattgcat 84
Query: 510 aattctggatgatgttgaaattatggaaaatg-ctgttgttatacattc-aattgtaggg 567
|||||| ||||||||||||||||||| |||| | ||||||||||| || |||||| |||
Sbjct: 85 tattctgnatgatgttgaaattatggagaatgncagttgttatacactccaattgtgggg 144
Query: 568 tggaaatcatccattggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaa 627
||||| ||| || | ||||||||||||||||||||||| |||||||| || || ||||||
Sbjct: 145 tggaagtcaaccgtaggaaaatggtcacgtgtacagggtgaaggtgaccataacgccaaa 204
Query: 628 cttggcattactattcttggtgaagccgttgatgttgaagatgaagtagttgtagttaac 687
|| || || || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 ctcggtatcacaattcttggtgaagccgttgatgttgaagatgaagtggttgtagttaac 264
Query: 688 agcatcgtgctcccaaataaaactctcaatgtcagtgtccaagaggagatcat 740
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 agcattgtgctccccaataaaactctcaatgtcagtgtgcaagaggagatcat 317
>ref|XM_470594.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1131
Score = 293 bits (148), Expect = 9e-077
Identities = 238/268 (88%)
Strand = Plus / Plus
Query: 152 ttgaagctcttcattcagcaactaaggcgcttccaccagactttgttaggttagatcaag 211
||||||||||||| || ||||| || || |||||| |||||| |||||||||||||||||
Sbjct: 623 ttgaagctcttcactcggcaacaaaagcacttccagcagactatgttaggttagatcaag 682
Query: 212 acattttatcccctcgagcgggaaagaaggagctgtacacataccagacacttgatttct 271
| ||||||||||||| ||| ||||||||||| || |||||||||||||| || || || |
Sbjct: 683 atattttatcccctctagcaggaaagaaggaactttacacataccagactctcgactttt 742
Query: 272 gggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatctctctcagt 331
||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 743 gggaacagatcaagaccccagggatgtctttgagatgctctggcctatatctttctcagt 802
Query: 332 ttcgccatacctctcctcatcttttagcctcaggagatggcaaaagaactgccactattg 391
| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 803 tccgccatacctctcctcatcttttagcctcaggagatggcaaaaggagtgccactatta 862
Query: 392 ttggcgatgtctatatccatccatctgc 419
| || ||||| || || ||||| |||||
Sbjct: 863 taggtgatgtgtacattcatccgtctgc 890
Score = 178 bits (90), Expect = 4e-042
Identities = 123/134 (91%)
Strand = Plus / Plus
Query: 607 gaaggtgatcacaatgccaaacttggcattactattcttggtgaagccgttgatgttgaa 666
|||||||| || || |||||||| || || || |||||||||||||||||||||||||||
Sbjct: 991 gaaggtgaccataacgccaaactcggtatcacaattcttggtgaagccgttgatgttgaa 1050
Query: 667 gatgaagtagttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtgtc 726
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 1051 gatgaagtggttgtagttaacagcattgtgctccccaataaaactctcaatgtcagtgtg 1110
Query: 727 caagaggagatcat 740
||||||||||||||
Sbjct: 1111 caagaggagatcat 1124
Score = 117 bits (59), Expect = 1e-023
Identities = 89/99 (89%)
Strand = Plus / Plus
Query: 437 caaagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggc 496
||||||| || || |||||||| ||||||||||||||||| |||||||||| |||||||
Sbjct: 890 caaagatcggtcctaatgtctcgatatcagcaaatgcacgtattggagctggagccaggc 949
Query: 497 ttatcaattgcataattctggatgatgttgaaattatgg 535
|||| ||||||| |||||||||||||||||||||||||
Sbjct: 950 ttattcattgcattattctggatgatgttgaaattatgg 988
Score = 103 bits (52), Expect = 2e-019
Identities = 111/128 (86%), Gaps = 2/128 (1%)
Strand = Plus / Plus
Query: 1 gaactgctgcactatacggaaaagccggagacttt-gtgagtgatctcataaattgcgga 59
|||||| | ||||| || |||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 472 gaactgttacactacacagaaaagccagagacttttgtgagtgatctcataaattgtggg 531
Query: 60 ga-tatatatttactcccgatatccttagcgccattgaggatgtcttaaaacagaaaaaa 118
| ||||||||||| ||| ||||| ||| ||||| |||||||||||||||||||| |||
Sbjct: 532 gtctatatatttacacccaatatctttaatgccatcgaggatgtcttaaaacagaagaaa 591
Query: 119 gacagagc 126
||||||||
Sbjct: 592 gacagagc 599
>gb|AU172896.1|AU172896 AU172896 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E40560, mRNA sequence
Length = 449
Score = 246 bits (124), Expect = 2e-062
Identities = 178/196 (90%)
Strand = Plus / Plus
Query: 545 ttgttatacattcaattgtagggtggaaatcatccattggaaaatggtcacgtgtacagg 604
|||||||||| |||||||| |||||||| ||| || | ||||||||||||||||||||||
Sbjct: 1 ttgttatacactcaattgtggggtggaagtcaaccgtaggaaaatggtcacgtgtacagg 60
Query: 605 gcgaaggtgatcacaatgccaaacttggcattactattcttggtgaagccgttgatgttg 664
| |||||||| || || |||||||| || || || |||||||||||||||||||||||||
Sbjct: 61 gtgaaggtgaccataacgccaaactcggtatcacaattcttggtgaagccgttgatgttg 120
Query: 665 aagatgaagtagttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtg 724
|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 121 aagatgaagtggttgtagttaacagcattgtgctccccaataaaactctcaatgtcagtg 180
Query: 725 tccaagaggagatcat 740
| ||||||||||||||
Sbjct: 181 tgcaagaggagatcat 196
>gb|CA998312.1|CA998312 S345B_A04 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 457
Score = 238 bits (120), Expect = 5e-060
Identities = 183/204 (89%)
Strand = Plus / Plus
Query: 152 ttgaagctcttcattcagcaactaaggcgcttccaccagactttgttaggttagatcaag 211
||||||||||||| || ||||| || || |||||| |||||| |||||||||||||||||
Sbjct: 254 ttgaagctcttcactcggcaacaaaagcacttccagcagactatgttaggttagatcaag 313
Query: 212 acattttatcccctcgagcgggaaagaaggagctgtacacataccagacacttgatttct 271
| ||||||||||||| ||| ||||||||||| || |||||||||||||| || || || |
Sbjct: 314 atattttatcccctctagcaggaaagaaggaactttacacataccagactctcgactttt 373
Query: 272 gggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatctctctcagt 331
||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 374 gggaacagatcaagaccccagggatgtctttgagatgctctggcctatatctttctcagt 433
Query: 332 ttcgccatacctctcctcatcttt 355
| ||||||||||||||||||||||
Sbjct: 434 tccgccatacctctcctcatcttt 457
Score = 103 bits (52), Expect = 2e-019
Identities = 111/128 (86%), Gaps = 2/128 (1%)
Strand = Plus / Plus
Query: 1 gaactgctgcactatacggaaaagccggagacttt-gtgagtgatctcataaattgcgga 59
|||||| | ||||| || |||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 103 gaactgttacactacacagaaaagccagagacttttgtgagtgatctcataaattgtggg 162
Query: 60 ga-tatatatttactcccgatatccttagcgccattgaggatgtcttaaaacagaaaaaa 118
| ||||||||||| ||| ||||| ||| ||||| |||||||||||||||||||| |||
Sbjct: 163 gtctatatatttacacccaatatctttaatgccatcgaggatgtcttaaaacagaagaaa 222
Query: 119 gacagagc 126
||||||||
Sbjct: 223 gacagagc 230
>gb|AU182885.1|AU182885 AU182885 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E40176, mRNA sequence
Length = 441
Score = 232 bits (117), Expect = 3e-058
Identities = 168/185 (90%)
Strand = Plus / Plus
Query: 556 tcaattgtagggtggaaatcatccattggaaaatggtcacgtgtacagggcgaaggtgat 615
|||||||| |||||||| ||| || | ||||||||||||||||||||||| ||||||||
Sbjct: 4 tcaattgtggggtggaagtcaaccgtaggaaaatggtcacgtgtacagggtgaaggtgac 63
Query: 616 cacaatgccaaacttggcattactattcttggtgaagccgttgatgttgaagatgaagta 675
|| || |||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 64 cataacgccaaactcggtatcacaattcttggtgaagccgttgatgttgaagatgaagtg 123
Query: 676 gttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtgtccaagaggag 735
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 124 gttgtagttaacagcattgtgctccccaataaaactctcaatgtcagtgtgcaagaggag 183
Query: 736 atcat 740
|||||
Sbjct: 184 atcat 188
>gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0014O06,
complete sequence
Length = 168031
Score = 157 bits (79), Expect = 1e-035
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 293 ggatgtctttgagatgctctgggttatatctctctcagtttcgccatacctctcctcatc 352
|||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 114040 ggatgtctttgagatgctctggcctatatctttctcagttccgccatacctctcctcatc 113981
Query: 353 ttttagcctcaggagatggcaaaagaactgccactattgttggcgatgtctatatccatc 412
||||||||||||||||||||||||| | |||||||||| | || ||||| || || ||||
Sbjct: 113980 ttttagcctcaggagatggcaaaaggagtgccactattataggtgatgtgtacattcatc 113921
Query: 413 catctgccaaggtgcatcc 431
| ||||| ||||| |||||
Sbjct: 113920 cgtctgcaaaggttcatcc 113902
Score = 157 bits (79), Expect = 1e-035
Identities = 91/95 (95%)
Strand = Plus / Minus
Query: 646 ggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaat 705
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct: 113023 ggtgaagccgttgatgttgaagatgaagtggttgtagttaacagcattgtgctccccaat 112964
Query: 706 aaaactctcaatgtcagtgtccaagaggagatcat 740
|||||||||||||||||||| ||||||||||||||
Sbjct: 112963 aaaactctcaatgtcagtgtgcaagaggagatcat 112929
Score = 131 bits (66), Expect = 8e-028
Identities = 102/114 (89%)
Strand = Plus / Minus
Query: 181 cttccaccagactttgttaggttagatcaagacattttatcccctcgagcgggaaagaag 240
|||||| |||||| |||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 114229 cttccagcagactatgttaggttagatcaagatattttatcccctctagcaggaaagaag 114170
Query: 241 gagctgtacacataccagacacttgatttctgggaacagatcaaaaccccaggg 294
|| || |||||||||||||| || || || |||||||||||||| |||||||||
Sbjct: 114169 gaactttacacataccagactctcgacttttgggaacagatcaagaccccaggg 114116
Score = 113 bits (57), Expect = 2e-022
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 451 aatgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcata 510
|||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 113721 aatgtctcgatatcagcaaatgcacgtattggagctggagccaggcttattcattgcatt 113662
Query: 511 attctggatgatgttgaaattatgg 535
|||||||||||||||||||||||||
Sbjct: 113661 attctggatgatgttgaaattatgg 113637
Score = 85.7 bits (43), Expect = 4e-014
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 36 gtgagtgatctcataaattgcggaga-tatatatttactcccgatatccttagcgccatt 94
|||||||||||||||||||| || | ||||||||||| ||| ||||| ||| |||||
Sbjct: 115715 gtgagtgatctcataaattgtggggtctatatatttacacccaatatctttaatgccatc 115656
Query: 95 gaggatgtcttaaaacagaaaaaagacagag 125
|||||||||||||||||||| ||||||||||
Sbjct: 115655 gaggatgtcttaaaacagaagaaagacagag 115625
Score = 77.8 bits (39), Expect = 1e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 538 aatgctgttgttatacattcaattgtagggtggaaatcatccattggaaaatggtcacgt 597
||||| ||||||||||| |||||||| |||||||| ||| || | |||||||||||||||
Sbjct: 113561 aatgcagttgttatacactcaattgtggggtggaagtcaaccgtaggaaaatggtcacgt 113502
Query: 598 gtacagg 604
|||||||
Sbjct: 113501 gtacagg 113495
>gb|AACV01006090.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006090, whole
genome shotgun sequence
Length = 24685
Score = 157 bits (79), Expect = 1e-035
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 293 ggatgtctttgagatgctctgggttatatctctctcagtttcgccatacctctcctcatc 352
|||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 21968 ggatgtctttgagatgctctggcctatatctttctcagttccgccatacctctcctcatc 21909
Query: 353 ttttagcctcaggagatggcaaaagaactgccactattgttggcgatgtctatatccatc 412
||||||||||||||||||||||||| | |||||||||| | || ||||| || || ||||
Sbjct: 21908 ttttagcctcaggagatggcaaaaggagtgccactattataggtgatgtgtacattcatc 21849
Query: 413 catctgccaaggtgcatcc 431
| ||||| ||||| |||||
Sbjct: 21848 cgtctgcaaaggttcatcc 21830
Score = 157 bits (79), Expect = 1e-035
Identities = 91/95 (95%)
Strand = Plus / Minus
Query: 646 ggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaat 705
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct: 20951 ggtgaagccgttgatgttgaagatgaagtggttgtagttaacagcattgtgctccccaat 20892
Query: 706 aaaactctcaatgtcagtgtccaagaggagatcat 740
|||||||||||||||||||| ||||||||||||||
Sbjct: 20891 aaaactctcaatgtcagtgtgcaagaggagatcat 20857
Score = 131 bits (66), Expect = 8e-028
Identities = 102/114 (89%)
Strand = Plus / Minus
Query: 181 cttccaccagactttgttaggttagatcaagacattttatcccctcgagcgggaaagaag 240
|||||| |||||| |||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 22157 cttccagcagactatgttaggttagatcaagatattttatcccctctagcaggaaagaag 22098
Query: 241 gagctgtacacataccagacacttgatttctgggaacagatcaaaaccccaggg 294
|| || |||||||||||||| || || || |||||||||||||| |||||||||
Sbjct: 22097 gaactttacacataccagactctcgacttttgggaacagatcaagaccccaggg 22044
Score = 113 bits (57), Expect = 2e-022
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 451 aatgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcata 510
|||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 21649 aatgtctcgatatcagcaaatgcacgtattggagctggagccaggcttattcattgcatt 21590
Query: 511 attctggatgatgttgaaattatgg 535
|||||||||||||||||||||||||
Sbjct: 21589 attctggatgatgttgaaattatgg 21565
Score = 85.7 bits (43), Expect = 4e-014
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 36 gtgagtgatctcataaattgcggaga-tatatatttactcccgatatccttagcgccatt 94
|||||||||||||||||||| || | ||||||||||| ||| ||||| ||| |||||
Sbjct: 23643 gtgagtgatctcataaattgtggggtctatatatttacacccaatatctttaatgccatc 23584
Query: 95 gaggatgtcttaaaacagaaaaaagacagag 125
|||||||||||||||||||| ||||||||||
Sbjct: 23583 gaggatgtcttaaaacagaagaaagacagag 23553
Score = 77.8 bits (39), Expect = 1e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 538 aatgctgttgttatacattcaattgtagggtggaaatcatccattggaaaatggtcacgt 597
||||| ||||||||||| |||||||| |||||||| ||| || | |||||||||||||||
Sbjct: 21489 aatgcagttgttatacactcaattgtggggtggaagtcaaccgtaggaaaatggtcacgt 21430
Query: 598 gtacagg 604
|||||||
Sbjct: 21429 gtacagg 21423
>ref|NT_107189.1| Oryza sativa (japonica cultivar-group)
Length = 1905944
Score = 157 bits (79), Expect = 1e-035
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 293 ggatgtctttgagatgctctgggttatatctctctcagtttcgccatacctctcctcatc 352
|||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 813887 ggatgtctttgagatgctctggcctatatctttctcagttccgccatacctctcctcatc 813828
Query: 353 ttttagcctcaggagatggcaaaagaactgccactattgttggcgatgtctatatccatc 412
||||||||||||||||||||||||| | |||||||||| | || ||||| || || ||||
Sbjct: 813827 ttttagcctcaggagatggcaaaaggagtgccactattataggtgatgtgtacattcatc 813768
Query: 413 catctgccaaggtgcatcc 431
| ||||| ||||| |||||
Sbjct: 813767 cgtctgcaaaggttcatcc 813749
Score = 157 bits (79), Expect = 1e-035
Identities = 91/95 (95%)
Strand = Plus / Minus
Query: 646 ggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaat 705
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct: 812870 ggtgaagccgttgatgttgaagatgaagtggttgtagttaacagcattgtgctccccaat 812811
Query: 706 aaaactctcaatgtcagtgtccaagaggagatcat 740
|||||||||||||||||||| ||||||||||||||
Sbjct: 812810 aaaactctcaatgtcagtgtgcaagaggagatcat 812776
Score = 131 bits (66), Expect = 8e-028
Identities = 102/114 (89%)
Strand = Plus / Minus
Query: 181 cttccaccagactttgttaggttagatcaagacattttatcccctcgagcgggaaagaag 240
|||||| |||||| |||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 814076 cttccagcagactatgttaggttagatcaagatattttatcccctctagcaggaaagaag 814017
Query: 241 gagctgtacacataccagacacttgatttctgggaacagatcaaaaccccaggg 294
|| || |||||||||||||| || || || |||||||||||||| |||||||||
Sbjct: 814016 gaactttacacataccagactctcgacttttgggaacagatcaagaccccaggg 813963
Score = 113 bits (57), Expect = 2e-022
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 451 aatgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcata 510
|||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 813568 aatgtctcgatatcagcaaatgcacgtattggagctggagccaggcttattcattgcatt 813509
Query: 511 attctggatgatgttgaaattatgg 535
|||||||||||||||||||||||||
Sbjct: 813508 attctggatgatgttgaaattatgg 813484
Score = 85.7 bits (43), Expect = 4e-014
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 36 gtgagtgatctcataaattgcggaga-tatatatttactcccgatatccttagcgccatt 94
|||||||||||||||||||| || | ||||||||||| ||| ||||| ||| |||||
Sbjct: 815562 gtgagtgatctcataaattgtggggtctatatatttacacccaatatctttaatgccatc 815503
Query: 95 gaggatgtcttaaaacagaaaaaagacagag 125
|||||||||||||||||||| ||||||||||
Sbjct: 815502 gaggatgtcttaaaacagaagaaagacagag 815472
Score = 77.8 bits (39), Expect = 1e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 538 aatgctgttgttatacattcaattgtagggtggaaatcatccattggaaaatggtcacgt 597
||||| ||||||||||| |||||||| |||||||| ||| || | |||||||||||||||
Sbjct: 813408 aatgcagttgttatacactcaattgtggggtggaagtcaaccgtaggaaaatggtcacgt 813349
Query: 598 gtacagg 604
|||||||
Sbjct: 813348 gtacagg 813342
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 157 bits (79), Expect = 1e-035
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 293 ggatgtctttgagatgctctgggttatatctctctcagtttcgccatacctctcctcatc 352
|||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 5679045 ggatgtctttgagatgctctggcctatatctttctcagttccgccatacctctcctcatc 5678986
Query: 353 ttttagcctcaggagatggcaaaagaactgccactattgttggcgatgtctatatccatc 412
||||||||||||||||||||||||| | |||||||||| | || ||||| || || ||||
Sbjct: 5678985 ttttagcctcaggagatggcaaaaggagtgccactattataggtgatgtgtacattcatc 5678926
Query: 413 catctgccaaggtgcatcc 431
| ||||| ||||| |||||
Sbjct: 5678925 cgtctgcaaaggttcatcc 5678907
Score = 157 bits (79), Expect = 1e-035
Identities = 91/95 (95%)
Strand = Plus / Minus
Query: 646 ggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaat 705
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct: 5678028 ggtgaagccgttgatgttgaagatgaagtggttgtagttaacagcattgtgctccccaat 5677969
Query: 706 aaaactctcaatgtcagtgtccaagaggagatcat 740
|||||||||||||||||||| ||||||||||||||
Sbjct: 5677968 aaaactctcaatgtcagtgtgcaagaggagatcat 5677934
Score = 131 bits (66), Expect = 8e-028
Identities = 102/114 (89%)
Strand = Plus / Minus
Query: 181 cttccaccagactttgttaggttagatcaagacattttatcccctcgagcgggaaagaag 240
|||||| |||||| |||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 5679234 cttccagcagactatgttaggttagatcaagatattttatcccctctagcaggaaagaag 5679175
Query: 241 gagctgtacacataccagacacttgatttctgggaacagatcaaaaccccaggg 294
|| || |||||||||||||| || || || |||||||||||||| |||||||||
Sbjct: 5679174 gaactttacacataccagactctcgacttttgggaacagatcaagaccccaggg 5679121
Score = 113 bits (57), Expect = 2e-022
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 451 aatgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcata 510
|||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 5678726 aatgtctcgatatcagcaaatgcacgtattggagctggagccaggcttattcattgcatt 5678667
Query: 511 attctggatgatgttgaaattatgg 535
|||||||||||||||||||||||||
Sbjct: 5678666 attctggatgatgttgaaattatgg 5678642
Score = 85.7 bits (43), Expect = 4e-014
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 36 gtgagtgatctcataaattgcggaga-tatatatttactcccgatatccttagcgccatt 94
|||||||||||||||||||| || | ||||||||||| ||| ||||| ||| |||||
Sbjct: 5680720 gtgagtgatctcataaattgtggggtctatatatttacacccaatatctttaatgccatc 5680661
Query: 95 gaggatgtcttaaaacagaaaaaagacagag 125
|||||||||||||||||||| ||||||||||
Sbjct: 5680660 gaggatgtcttaaaacagaagaaagacagag 5680630
Score = 77.8 bits (39), Expect = 1e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 538 aatgctgttgttatacattcaattgtagggtggaaatcatccattggaaaatggtcacgt 597
||||| ||||||||||| |||||||| |||||||| ||| || | |||||||||||||||
Sbjct: 5678566 aatgcagttgttatacactcaattgtggggtggaagtcaaccgtaggaaaatggtcacgt 5678507
Query: 598 gtacagg 604
|||||||
Sbjct: 5678506 gtacagg 5678500
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 157 bits (79), Expect = 1e-035
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 293 ggatgtctttgagatgctctgggttatatctctctcagtttcgccatacctctcctcatc 352
|||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 5871407 ggatgtctttgagatgctctggcctatatctttctcagttccgccatacctctcctcatc 5871348
Query: 353 ttttagcctcaggagatggcaaaagaactgccactattgttggcgatgtctatatccatc 412
||||||||||||||||||||||||| | |||||||||| | || ||||| || || ||||
Sbjct: 5871347 ttttagcctcaggagatggcaaaaggagtgccactattataggtgatgtgtacattcatc 5871288
Query: 413 catctgccaaggtgcatcc 431
| ||||| ||||| |||||
Sbjct: 5871287 cgtctgcaaaggttcatcc 5871269
Score = 157 bits (79), Expect = 1e-035
Identities = 91/95 (95%)
Strand = Plus / Minus
Query: 646 ggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaat 705
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct: 5870390 ggtgaagccgttgatgttgaagatgaagtggttgtagttaacagcattgtgctccccaat 5870331
Query: 706 aaaactctcaatgtcagtgtccaagaggagatcat 740
|||||||||||||||||||| ||||||||||||||
Sbjct: 5870330 aaaactctcaatgtcagtgtgcaagaggagatcat 5870296
Score = 131 bits (66), Expect = 8e-028
Identities = 102/114 (89%)
Strand = Plus / Minus
Query: 181 cttccaccagactttgttaggttagatcaagacattttatcccctcgagcgggaaagaag 240
|||||| |||||| |||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 5871596 cttccagcagactatgttaggttagatcaagatattttatcccctctagcaggaaagaag 5871537
Query: 241 gagctgtacacataccagacacttgatttctgggaacagatcaaaaccccaggg 294
|| || |||||||||||||| || || || |||||||||||||| |||||||||
Sbjct: 5871536 gaactttacacataccagactctcgacttttgggaacagatcaagaccccaggg 5871483
Score = 113 bits (57), Expect = 2e-022
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 451 aatgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcata 510
|||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 5871088 aatgtctcgatatcagcaaatgcacgtattggagctggagccaggcttattcattgcatt 5871029
Query: 511 attctggatgatgttgaaattatgg 535
|||||||||||||||||||||||||
Sbjct: 5871028 attctggatgatgttgaaattatgg 5871004
Score = 85.7 bits (43), Expect = 4e-014
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 36 gtgagtgatctcataaattgcggaga-tatatatttactcccgatatccttagcgccatt 94
|||||||||||||||||||| || | ||||||||||| ||| ||||| ||| |||||
Sbjct: 5873082 gtgagtgatctcataaattgtggggtctatatatttacacccaatatctttaatgccatc 5873023
Query: 95 gaggatgtcttaaaacagaaaaaagacagag 125
|||||||||||||||||||| ||||||||||
Sbjct: 5873022 gaggatgtcttaaaacagaagaaagacagag 5872992
Score = 77.8 bits (39), Expect = 1e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 538 aatgctgttgttatacattcaattgtagggtggaaatcatccattggaaaatggtcacgt 597
||||| ||||||||||| |||||||| |||||||| ||| || | |||||||||||||||
Sbjct: 5870928 aatgcagttgttatacactcaattgtggggtggaagtcaaccgtaggaaaatggtcacgt 5870869
Query: 598 gtacagg 604
|||||||
Sbjct: 5870868 gtacagg 5870862
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 157 bits (79), Expect = 1e-035
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 293 ggatgtctttgagatgctctgggttatatctctctcagtttcgccatacctctcctcatc 352
|||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 5649554 ggatgtctttgagatgctctggcctatatctttctcagttccgccatacctctcctcatc 5649495
Query: 353 ttttagcctcaggagatggcaaaagaactgccactattgttggcgatgtctatatccatc 412
||||||||||||||||||||||||| | |||||||||| | || ||||| || || ||||
Sbjct: 5649494 ttttagcctcaggagatggcaaaaggagtgccactattataggtgatgtgtacattcatc 5649435
Query: 413 catctgccaaggtgcatcc 431
| ||||| ||||| |||||
Sbjct: 5649434 cgtctgcaaaggttcatcc 5649416
Score = 157 bits (79), Expect = 1e-035
Identities = 91/95 (95%)
Strand = Plus / Minus
Query: 646 ggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaat 705
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct: 5648537 ggtgaagccgttgatgttgaagatgaagtggttgtagttaacagcattgtgctccccaat 5648478
Query: 706 aaaactctcaatgtcagtgtccaagaggagatcat 740
|||||||||||||||||||| ||||||||||||||
Sbjct: 5648477 aaaactctcaatgtcagtgtgcaagaggagatcat 5648443
Score = 131 bits (66), Expect = 8e-028
Identities = 102/114 (89%)
Strand = Plus / Minus
Query: 181 cttccaccagactttgttaggttagatcaagacattttatcccctcgagcgggaaagaag 240
|||||| |||||| |||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 5649743 cttccagcagactatgttaggttagatcaagatattttatcccctctagcaggaaagaag 5649684
Query: 241 gagctgtacacataccagacacttgatttctgggaacagatcaaaaccccaggg 294
|| || |||||||||||||| || || || |||||||||||||| |||||||||
Sbjct: 5649683 gaactttacacataccagactctcgacttttgggaacagatcaagaccccaggg 5649630
Score = 113 bits (57), Expect = 2e-022
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 451 aatgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcata 510
|||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 5649235 aatgtctcgatatcagcaaatgcacgtattggagctggagccaggcttattcattgcatt 5649176
Query: 511 attctggatgatgttgaaattatgg 535
|||||||||||||||||||||||||
Sbjct: 5649175 attctggatgatgttgaaattatgg 5649151
Score = 85.7 bits (43), Expect = 4e-014
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 36 gtgagtgatctcataaattgcggaga-tatatatttactcccgatatccttagcgccatt 94
|||||||||||||||||||| || | ||||||||||| ||| ||||| ||| |||||
Sbjct: 5651229 gtgagtgatctcataaattgtggggtctatatatttacacccaatatctttaatgccatc 5651170
Query: 95 gaggatgtcttaaaacagaaaaaagacagag 125
|||||||||||||||||||| ||||||||||
Sbjct: 5651169 gaggatgtcttaaaacagaagaaagacagag 5651139
Score = 77.8 bits (39), Expect = 1e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 538 aatgctgttgttatacattcaattgtagggtggaaatcatccattggaaaatggtcacgt 597
||||| ||||||||||| |||||||| |||||||| ||| || | |||||||||||||||
Sbjct: 5649075 aatgcagttgttatacactcaattgtggggtggaagtcaaccgtaggaaaatggtcacgt 5649016
Query: 598 gtacagg 604
|||||||
Sbjct: 5649015 gtacagg 5649009
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 157 bits (79), Expect = 1e-035
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 293 ggatgtctttgagatgctctgggttatatctctctcagtttcgccatacctctcctcatc 352
|||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 5650341 ggatgtctttgagatgctctggcctatatctttctcagttccgccatacctctcctcatc 5650282
Query: 353 ttttagcctcaggagatggcaaaagaactgccactattgttggcgatgtctatatccatc 412
||||||||||||||||||||||||| | |||||||||| | || ||||| || || ||||
Sbjct: 5650281 ttttagcctcaggagatggcaaaaggagtgccactattataggtgatgtgtacattcatc 5650222
Query: 413 catctgccaaggtgcatcc 431
| ||||| ||||| |||||
Sbjct: 5650221 cgtctgcaaaggttcatcc 5650203
Score = 157 bits (79), Expect = 1e-035
Identities = 91/95 (95%)
Strand = Plus / Minus
Query: 646 ggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaat 705
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct: 5649324 ggtgaagccgttgatgttgaagatgaagtggttgtagttaacagcattgtgctccccaat 5649265
Query: 706 aaaactctcaatgtcagtgtccaagaggagatcat 740
|||||||||||||||||||| ||||||||||||||
Sbjct: 5649264 aaaactctcaatgtcagtgtgcaagaggagatcat 5649230
Score = 131 bits (66), Expect = 8e-028
Identities = 102/114 (89%)
Strand = Plus / Minus
Query: 181 cttccaccagactttgttaggttagatcaagacattttatcccctcgagcgggaaagaag 240
|||||| |||||| |||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 5650530 cttccagcagactatgttaggttagatcaagatattttatcccctctagcaggaaagaag 5650471
Query: 241 gagctgtacacataccagacacttgatttctgggaacagatcaaaaccccaggg 294
|| || |||||||||||||| || || || |||||||||||||| |||||||||
Sbjct: 5650470 gaactttacacataccagactctcgacttttgggaacagatcaagaccccaggg 5650417
Score = 113 bits (57), Expect = 2e-022
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 451 aatgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcata 510
|||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 5650022 aatgtctcgatatcagcaaatgcacgtattggagctggagccaggcttattcattgcatt 5649963
Query: 511 attctggatgatgttgaaattatgg 535
|||||||||||||||||||||||||
Sbjct: 5649962 attctggatgatgttgaaattatgg 5649938
Score = 85.7 bits (43), Expect = 4e-014
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 36 gtgagtgatctcataaattgcggaga-tatatatttactcccgatatccttagcgccatt 94
|||||||||||||||||||| || | ||||||||||| ||| ||||| ||| |||||
Sbjct: 5652016 gtgagtgatctcataaattgtggggtctatatatttacacccaatatctttaatgccatc 5651957
Query: 95 gaggatgtcttaaaacagaaaaaagacagag 125
|||||||||||||||||||| ||||||||||
Sbjct: 5651956 gaggatgtcttaaaacagaagaaagacagag 5651926
Score = 77.8 bits (39), Expect = 1e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 538 aatgctgttgttatacattcaattgtagggtggaaatcatccattggaaaatggtcacgt 597
||||| ||||||||||| |||||||| |||||||| ||| || | |||||||||||||||
Sbjct: 5649862 aatgcagttgttatacactcaattgtggggtggaagtcaaccgtaggaaaatggtcacgt 5649803
Query: 598 gtacagg 604
|||||||
Sbjct: 5649802 gtacagg 5649796
>gb|AQ796728.1|AQ796728 nbxb0071C05f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0071C05f, DNA sequence
Length = 642
Score = 145 bits (73), Expect = 5e-032
Identities = 89/95 (93%)
Strand = Plus / Minus
Query: 646 ggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaat 705
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||
Sbjct: 231 ggtgaagccgttgatgttgaagatgaagtggttgtagttaacagcattgtgctccncaat 172
Query: 706 aaaactctcaatgtcagtgtccaagaggagatcat 740
| |||||||||||||||||| ||||||||||||||
Sbjct: 171 anaactctcaatgtcagtgtgcaagaggagatcat 137
>gb|CA999183.1|CA999183 S234O_D10 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 377
Score = 85.7 bits (43), Expect = 4e-014
Identities = 83/95 (87%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 33 tttgtgagtgatctcataaattgcggaga-tatatatttactcccgatatccttagcgcc 91
||||||||||||||||||||||| || || ||||||||||| ||| ||||| ||| |||
Sbjct: 134 tttgtgagtgatctcataaattgtggggactatatatttacacccaatatctttaatgcc 193
Query: 92 attgaggatgtcttaaaacagaaaaaagacagagc 126
|| ||||||||||||||| | || |||||||||||
Sbjct: 194 atcgaggatgtcttaaaagataacaaagacagagc 228
Score = 56.0 bits (28), Expect = 4e-005
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 152 ttgaagct-cttcattcagcaactaaggcgcttccaccagactttgttaggttagatcaa 210
|||||||| ||||| || ||||| || || |||||| |||||| ||||||| |||||| |
Sbjct: 252 ttgaagctgcttcactcggcaacaaaagcacttccatcagactatgttaggctagatcga 311
Query: 211 gacattttatcccctc 226
|| |||||||||||||
Sbjct: 312 gatattttatcccctc 327
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,521,625
Number of Sequences: 438736
Number of extensions: 1521625
Number of successful extensions: 8676
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8551
Number of HSP's gapped (non-prelim): 111
length of query: 1000
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 979
effective length of database: 2,791,206,460
effective search space: 2732591124340
effective search space used: 2732591124340
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)