BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440958.2.1
(791 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU101176.1|AU101176 AU101176 Rice panicle at flowering s... 88 8e-015
dbj|AK068905.1| Oryza sativa (japonica cultivar-group) cDNA... 88 8e-015
gb|AU165365.1|AU165365 AU165365 Rice panicle at flowering s... 74 1e-010
emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC O... 70 2e-009
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 70 2e-009
gb|AACV01024717.1| Oryza sativa (japonica cultivar-group) c... 70 2e-009
gb|CH401275.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|AACV01024715.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC O... 60 2e-006
gb|AACV01024695.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
gb|AACV01024681.1| Oryza sativa (japonica cultivar-group) c... 58 8e-006
emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC O... 54 1e-004
gb|AACV01024698.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
gb|AU182423.1|AU182423 AU182423 Rice panicle at flowering s... 50 0.002
gb|AC130603.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AC132485.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AACV01012559.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01013578.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
dbj|AP005695.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP005822.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
ref|NT_107217.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01016288.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
dbj|AP004006.5| Oryza sativa (japonica cultivar-group) geno... 44 0.11
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 44 0.11
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP004214.1| Oryza sativa (japonica cultivar-group) chro... 42 0.45
dbj|AK110418.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.45
dbj|AP004840.3| Oryza sativa (japonica cultivar-group) geno... 42 0.45
dbj|AP004994.2| Oryza sativa (japonica cultivar-group) geno... 42 0.45
dbj|AP004862.3| Oryza sativa (japonica cultivar-group) geno... 42 0.45
gb|AACV01003479.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
gb|AACV01013392.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 42 0.45
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 42 0.45
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.45
>gb|AU101176.1|AU101176 AU101176 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2190, mRNA sequence
Length = 609
Score = 87.7 bits (44), Expect = 8e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaagtcgatta 249
||||||| |||||||| ||||| || | |||||||||||||||||||||||| | ||
Sbjct: 58 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaagtgggttc 117
Query: 250 tacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaa 301
||||||||||||| |||| ||| || |||||||| | ||||||||||||||
Sbjct: 118 tacatgactggggcgatgacgattgcatcaagatattaaagaactgcaagaa 169
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 316 aaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtc 364
||||||| ||||||||||| ||||||| ||||| ||||||||| ||||
Sbjct: 190 aaggaggaaaggtgataatcatggatatagtggtcggagcaggaccgtc 238
>dbj|AK068905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G03, full
insert sequence
Length = 1357
Score = 87.7 bits (44), Expect = 8e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaagtcgatta 249
||||||| |||||||| ||||| || | |||||||||||||||||||||||| | ||
Sbjct: 766 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaagtgggttc 825
Query: 250 tacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaa 301
||||||||||||| |||| ||| || |||||||| | ||||||||||||||
Sbjct: 826 tacatgactggggcgatgacgattgcatcaagatattaaagaactgcaagaa 877
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 316 aaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtc 364
||||||| ||||||||||| ||||||| ||||| ||||||||| ||||
Sbjct: 898 aaggaggaaaggtgataatcatggatatagtggtcggagcaggaccgtc 946
>gb|AU165365.1|AU165365 AU165365 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0687, mRNA sequence
Length = 538
Score = 73.8 bits (37), Expect = 1e-010
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 222 gcagacgctgtcttcctcaagtcgattatacatgactggggtgatgccgactgtgtcaag 281
|||||||||||||||||||||| | | ||||||||||||| |||| ||| || |||||
Sbjct: 1 gcagacgctgtcttcctcaagtgggtnctacatgactggggcgatgacgattgcatcaag 60
Query: 282 atactgaagaactgcaagaa 301
||| | ||||||||||||||
Sbjct: 61 atattaaagaactgcaagaa 80
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 316 aaggaggcaaggtgataatactggatatcgtggttggagcagga 359
||||||| ||||||||||| ||||||| ||||| |||||||||
Sbjct: 101 aaggaggaaaggtgataatcatggatatagtggtcggagcagga 144
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 174521
Score = 69.9 bits (35), Expect = 2e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggc 304
|||||| ||||||||||| |||| || |||||||||||||| |||||||||||||| ||
Sbjct: 26402 gattatgcatgactggggcgatgatgaatgtgtcaagatactaaagaactgcaagaaagc 26343
Query: 305 cat 307
|||
Sbjct: 26342 cat 26340
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 179 cgtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcct 238
|||| |||| |||||||| ||||||||||||||||| | ||||| |||||||||||||
Sbjct: 30590 cgtggagtacgtcgccggcgacatgttcgagagcgtcccaccggcaaacgctgtcttcct 30531
Query: 239 caag 242
||||
Sbjct: 30530 caag 30527
Score = 60.0 bits (30), Expect = 2e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||| ||||||||| |||||| ||||| |||||||| |||| |||||||||
Sbjct: 26249 cttgtttgatgcatacatcatgcttatcaatggtgtggagcgagacgagcaagagtggaa 26190
Query: 458 gaagatcatctttgaagccgggttta 483
|||| | || | |||||||||||||
Sbjct: 26189 gaaggttttcgtcgaagccgggttta 26164
Score = 58.0 bits (29), Expect = 8e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 411 tacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatcatcttt 470
||||||||| |||||| |||| |||| ||||||||| ||||||||||||| | || ||
Sbjct: 60100 tacatcatgtttatcaatggtgccgagagagatgagcaagagtggaagaagcttttcctt 60041
Query: 471 gaagccgggttta 483
||||| |||||||
Sbjct: 60040 gaagctgggttta 60028
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 61937 ttccaggggatcagctcgctggtcgacgtcgccggcggg 61899
Score = 46.1 bits (23), Expect = 0.029
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 269 cgactgtgtcaagatactgaagaactgcaagaaggccat 307
||||||||||||||||||| |||||| ||||| |||||
Sbjct: 60242 cgactgtgtcaagatactggggaactgtaagaaagccat 60204
Score = 44.1 bits (22), Expect = 0.11
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 193 ccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
|||| |||||||| ||||| ||| | ||||| |||||||||||||||||
Sbjct: 61783 ccggcgacatgtttgagagtgttccaccggcaaacgctgtcttcctcaag 61734
>ref|NT_107148.1| Oryza sativa (japonica cultivar-group)
Length = 1822333
Score = 69.9 bits (35), Expect = 2e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggc 304
|||||| ||||||||||| |||| || |||||||||||||| |||||||||||||| ||
Sbjct: 1371107 gattatgcatgactggggcgatgatgaatgtgtcaagatactaaagaactgcaagaaagc 1371166
Query: 305 cat 307
|||
Sbjct: 1371167 cat 1371169
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 179 cgtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcct 238
|||| |||| |||||||| ||||||||||||||||| | ||||| |||||||||||||
Sbjct: 1366919 cgtggagtacgtcgccggcgacatgttcgagagcgtcccaccggcaaacgctgtcttcct 1366978
Query: 239 caag 242
||||
Sbjct: 1366979 caag 1366982
Score = 60.0 bits (30), Expect = 2e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||| ||||||||| |||||| ||||| |||||||| |||| |||||||||
Sbjct: 1371260 cttgtttgatgcatacatcatgcttatcaatggtgtggagcgagacgagcaagagtggaa 1371319
Query: 458 gaagatcatctttgaagccgggttta 483
|||| | || | |||||||||||||
Sbjct: 1371320 gaaggttttcgtcgaagccgggttta 1371345
Score = 60.0 bits (30), Expect = 2e-006
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 93 caggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtc 152
||||||||||| | ||||||||| | || ||||||||||| | || ||| | |||||
Sbjct: 1075802 caggccatcgccagggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtc 1075743
Query: 153 gtcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagc 212
|||||| ||||| | || |||| |||| |||| ||||||| |||||||||||||||
Sbjct: 1075742 gtcgccaaggctcccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagc 1075683
Query: 213 gtttcgtcggcagacgctgtcttcctcaag 242
|| | ||||| |||||||||||||||||
Sbjct: 1075682 attccaccggcaaacgctgtcttcctcaag 1075653
Score = 58.0 bits (29), Expect = 8e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 411 tacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatcatcttt 470
||||||||| |||||| |||| |||| ||||||||| ||||||||||||| | || ||
Sbjct: 1337409 tacatcatgtttatcaatggtgccgagagagatgagcaagagtggaagaagcttttcctt 1337468
Query: 471 gaagccgggttta 483
||||| |||||||
Sbjct: 1337469 gaagctgggttta 1337481
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaa 292
|||||| |||||||||||||||| ||| ||||||||| |||| |||||
Sbjct: 1074412 gattatgcatgactggggtgatgacgaatgtgtcaaggtactaaagaa 1074365
Score = 56.0 bits (28), Expect = 3e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 422 tatcaacggtgtcgagcgagatgagcgagagtggaagaag 461
|||||| |||||||||||||||||| |||||||||||||
Sbjct: 1074235 tatcaatggtgtcgagcgagatgagaaagagtggaagaag 1074196
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 1335572 ttccaggggatcagctcgctggtcgacgtcgccggcggg 1335610
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 1111615 ttccaggggatcagctcgctggtcgacgtcgccggcggg 1111577
Score = 46.1 bits (23), Expect = 0.029
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 269 cgactgtgtcaagatactgaagaactgcaagaaggccat 307
||||||||||||||||||| |||||| ||||| |||||
Sbjct: 1337267 cgactgtgtcaagatactggggaactgtaagaaagccat 1337305
Score = 44.1 bits (22), Expect = 0.11
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 193 ccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
|||| |||||||| ||||| ||| | ||||| |||||||||||||||||
Sbjct: 1335726 ccggcgacatgtttgagagtgttccaccggcaaacgctgtcttcctcaag 1335775
>gb|AACV01024717.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024717, whole
genome shotgun sequence
Length = 13077
Score = 69.9 bits (35), Expect = 2e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggc 304
|||||| ||||||||||| |||| || |||||||||||||| |||||||||||||| ||
Sbjct: 11562 gattatgcatgactggggcgatgatgaatgtgtcaagatactaaagaactgcaagaaagc 11503
Query: 305 cat 307
|||
Sbjct: 11502 cat 11500
Score = 60.0 bits (30), Expect = 2e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||| ||||||||| |||||| ||||| |||||||| |||| |||||||||
Sbjct: 11409 cttgtttgatgcatacatcatgcttatcaatggtgtggagcgagacgagcaagagtggaa 11350
Query: 458 gaagatcatctttgaagccgggttta 483
|||| | || | |||||||||||||
Sbjct: 11349 gaaggttttcgtcgaagccgggttta 11324
>gb|CH401275.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000112
genomic scaffold, whole genome shotgun sequence
Length = 845600
Score = 69.9 bits (35), Expect = 2e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggc 304
|||||| ||||||||||| |||| || |||||||||||||| |||||||||||||| ||
Sbjct: 514810 gattatgcatgactggggcgatgatgaatgtgtcaagatactaaagaactgcaagaaagc 514869
Query: 305 cat 307
|||
Sbjct: 514870 cat 514872
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 179 cgtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcct 238
|||| |||| |||||||| ||||||||||||||||| | ||||| |||||||||||||
Sbjct: 509971 cgtggagtacgtcgccggcgacatgttcgagagcgtcccaccggcaaacgctgtcttcct 510030
Query: 239 caag 242
||||
Sbjct: 510031 caag 510034
Score = 60.0 bits (30), Expect = 2e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||| ||||||||| |||||| ||||| |||||||| |||| |||||||||
Sbjct: 514963 cttgtttgatgcatacatcatgcttatcaatggtgtggagcgagacgagcaagagtggaa 515022
Query: 458 gaagatcatctttgaagccgggttta 483
|||| | || | |||||||||||||
Sbjct: 515023 gaaggttttcgtcgaagccgggttta 515048
Score = 60.0 bits (30), Expect = 2e-006
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 93 caggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtc 152
||||||||||| | ||||||||| | || ||||||||||| | || ||| | |||||
Sbjct: 239716 caggccatcgccagggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtc 239657
Query: 153 gtcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagc 212
|||||| ||||| | || |||| |||| |||| ||||||| |||||||||||||||
Sbjct: 239656 gtcgccaaggctcccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagc 239597
Query: 213 gtttcgtcggcagacgctgtcttcctcaag 242
|| | ||||| |||||||||||||||||
Sbjct: 239596 attccaccggcaaacgctgtcttcctcaag 239567
Score = 58.0 bits (29), Expect = 8e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 411 tacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatcatcttt 470
||||||||| |||||| |||| |||| ||||||||| ||||||||||||| | || ||
Sbjct: 92875 tacatcatgtttatcaatggtgccgagagagatgagcaagagtggaagaagcttttcctt 92934
Query: 471 gaagccgggttta 483
||||| |||||||
Sbjct: 92935 gaagctgggttta 92947
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaa 292
|||||| |||||||||||||||| ||| ||||||||| |||| |||||
Sbjct: 238326 gattatgcatgactggggtgatgacgaatgtgtcaaggtactaaagaa 238279
Score = 56.0 bits (28), Expect = 3e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 422 tatcaacggtgtcgagcgagatgagcgagagtggaagaag 461
|||||| |||||||||||||||||| |||||||||||||
Sbjct: 238149 tatcaatggtgtcgagcgagatgagaaagagtggaagaag 238110
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 276089 ttccaggggatcagctcgctggtcgacgtcgccggcggg 276051
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 91038 ttccaggggatcagctcgctggtcgacgtcgccggcggg 91076
Score = 46.1 bits (23), Expect = 0.029
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 269 cgactgtgtcaagatactgaagaactgcaagaaggccat 307
||||||||||||||||||| |||||| ||||| |||||
Sbjct: 92733 cgactgtgtcaagatactggggaactgtaagaaagccat 92771
Score = 44.1 bits (22), Expect = 0.11
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 193 ccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
|||| |||||||| ||||| ||| | ||||| |||||||||||||||||
Sbjct: 91192 ccggcgacatgtttgagagtgttccaccggcaaacgctgtcttcctcaag 91241
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 69.9 bits (35), Expect = 2e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggc 304
|||||| ||||||||||| |||| || |||||||||||||| |||||||||||||| ||
Sbjct: 12547869 gattatgcatgactggggcgatgatgaatgtgtcaagatactaaagaactgcaagaaagc 12547928
Query: 305 cat 307
|||
Sbjct: 12547929 cat 12547931
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 179 cgtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcct 238
|||| |||| |||||||| ||||||||||||||||| | ||||| |||||||||||||
Sbjct: 12543030 cgtggagtacgtcgccggcgacatgttcgagagcgtcccaccggcaaacgctgtcttcct 12543089
Query: 239 caag 242
||||
Sbjct: 12543090 caag 12543093
Score = 60.0 bits (30), Expect = 2e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||| ||||||||| |||||| ||||| |||||||| |||| |||||||||
Sbjct: 12548022 cttgtttgatgcatacatcatgcttatcaatggtgtggagcgagacgagcaagagtggaa 12548081
Query: 458 gaagatcatctttgaagccgggttta 483
|||| | || | |||||||||||||
Sbjct: 12548082 gaaggttttcgtcgaagccgggttta 12548107
Score = 60.0 bits (30), Expect = 2e-006
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 93 caggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtc 152
||||||||||| | ||||||||| | || ||||||||||| | || ||| | |||||
Sbjct: 12272775 caggccatcgccagggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtc 12272716
Query: 153 gtcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagc 212
|||||| ||||| | || |||| |||| |||| ||||||| |||||||||||||||
Sbjct: 12272715 gtcgccaaggctcccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagc 12272656
Query: 213 gtttcgtcggcagacgctgtcttcctcaag 242
|| | ||||| |||||||||||||||||
Sbjct: 12272655 attccaccggcaaacgctgtcttcctcaag 12272626
Score = 58.0 bits (29), Expect = 8e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 411 tacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatcatcttt 470
||||||||| |||||| |||| |||| ||||||||| ||||||||||||| | || ||
Sbjct: 12125934 tacatcatgtttatcaatggtgccgagagagatgagcaagagtggaagaagcttttcctt 12125993
Query: 471 gaagccgggttta 483
||||| |||||||
Sbjct: 12125994 gaagctgggttta 12126006
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaa 292
|||||| |||||||||||||||| ||| ||||||||| |||| |||||
Sbjct: 12271385 gattatgcatgactggggtgatgacgaatgtgtcaaggtactaaagaa 12271338
Score = 56.0 bits (28), Expect = 3e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 422 tatcaacggtgtcgagcgagatgagcgagagtggaagaag 461
|||||| |||||||||||||||||| |||||||||||||
Sbjct: 12271208 tatcaatggtgtcgagcgagatgagaaagagtggaagaag 12271169
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 12309148 ttccaggggatcagctcgctggtcgacgtcgccggcggg 12309110
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 12124097 ttccaggggatcagctcgctggtcgacgtcgccggcggg 12124135
Score = 46.1 bits (23), Expect = 0.029
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 269 cgactgtgtcaagatactgaagaactgcaagaaggccat 307
||||||||||||||||||| |||||| ||||| |||||
Sbjct: 12125792 cgactgtgtcaagatactggggaactgtaagaaagccat 12125830
Score = 44.1 bits (22), Expect = 0.11
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 193 ccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
|||| |||||||| ||||| ||| | ||||| |||||||||||||||||
Sbjct: 12124251 ccggcgacatgtttgagagtgttccaccggcaaacgctgtcttcctcaag 12124300
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 69.9 bits (35), Expect = 2e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggc 304
|||||| ||||||||||| |||| || |||||||||||||| |||||||||||||| ||
Sbjct: 15055445 gattatgcatgactggggcgatgatgaatgtgtcaagatactaaagaactgcaagaaagc 15055504
Query: 305 cat 307
|||
Sbjct: 15055505 cat 15055507
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 179 cgtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcct 238
|||| |||| |||||||| ||||||||||||||||| | ||||| |||||||||||||
Sbjct: 15051257 cgtggagtacgtcgccggcgacatgttcgagagcgtcccaccggcaaacgctgtcttcct 15051316
Query: 239 caag 242
||||
Sbjct: 15051317 caag 15051320
Score = 60.0 bits (30), Expect = 2e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||| ||||||||| |||||| ||||| |||||||| |||| |||||||||
Sbjct: 15055598 cttgtttgatgcatacatcatgcttatcaatggtgtggagcgagacgagcaagagtggaa 15055657
Query: 458 gaagatcatctttgaagccgggttta 483
|||| | || | |||||||||||||
Sbjct: 15055658 gaaggttttcgtcgaagccgggttta 15055683
Score = 60.0 bits (30), Expect = 2e-006
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 93 caggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtc 152
||||||||||| | ||||||||| | || ||||||||||| | || ||| | |||||
Sbjct: 14760140 caggccatcgccagggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtc 14760081
Query: 153 gtcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagc 212
|||||| ||||| | || |||| |||| |||| ||||||| |||||||||||||||
Sbjct: 14760080 gtcgccaaggctcccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagc 14760021
Query: 213 gtttcgtcggcagacgctgtcttcctcaag 242
|| | ||||| |||||||||||||||||
Sbjct: 14760020 attccaccggcaaacgctgtcttcctcaag 14759991
Score = 58.0 bits (29), Expect = 8e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 411 tacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatcatcttt 470
||||||||| |||||| |||| |||| ||||||||| ||||||||||||| | || ||
Sbjct: 15021747 tacatcatgtttatcaatggtgccgagagagatgagcaagagtggaagaagcttttcctt 15021806
Query: 471 gaagccgggttta 483
||||| |||||||
Sbjct: 15021807 gaagctgggttta 15021819
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaa 292
|||||| |||||||||||||||| ||| ||||||||| |||| |||||
Sbjct: 14758750 gattatgcatgactggggtgatgacgaatgtgtcaaggtactaaagaa 14758703
Score = 56.0 bits (28), Expect = 3e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 422 tatcaacggtgtcgagcgagatgagcgagagtggaagaag 461
|||||| |||||||||||||||||| |||||||||||||
Sbjct: 14758573 tatcaatggtgtcgagcgagatgagaaagagtggaagaag 14758534
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 15019910 ttccaggggatcagctcgctggtcgacgtcgccggcggg 15019948
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 14795953 ttccaggggatcagctcgctggtcgacgtcgccggcggg 14795915
Score = 46.1 bits (23), Expect = 0.029
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 269 cgactgtgtcaagatactgaagaactgcaagaaggccat 307
||||||||||||||||||| |||||| ||||| |||||
Sbjct: 15021605 cgactgtgtcaagatactggggaactgtaagaaagccat 15021643
Score = 44.1 bits (22), Expect = 0.11
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 193 ccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
|||| |||||||| ||||| ||| | ||||| |||||||||||||||||
Sbjct: 15020064 ccggcgacatgtttgagagtgttccaccggcaaacgctgtcttcctcaag 15020113
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 69.9 bits (35), Expect = 2e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggc 304
|||||| ||||||||||| |||| || |||||||||||||| |||||||||||||| ||
Sbjct: 15009728 gattatgcatgactggggcgatgatgaatgtgtcaagatactaaagaactgcaagaaagc 15009787
Query: 305 cat 307
|||
Sbjct: 15009788 cat 15009790
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 179 cgtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcct 238
|||| |||| |||||||| ||||||||||||||||| | ||||| |||||||||||||
Sbjct: 15005540 cgtggagtacgtcgccggcgacatgttcgagagcgtcccaccggcaaacgctgtcttcct 15005599
Query: 239 caag 242
||||
Sbjct: 15005600 caag 15005603
Score = 60.0 bits (30), Expect = 2e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||| ||||||||| |||||| ||||| |||||||| |||| |||||||||
Sbjct: 15009881 cttgtttgatgcatacatcatgcttatcaatggtgtggagcgagacgagcaagagtggaa 15009940
Query: 458 gaagatcatctttgaagccgggttta 483
|||| | || | |||||||||||||
Sbjct: 15009941 gaaggttttcgtcgaagccgggttta 15009966
Score = 60.0 bits (30), Expect = 2e-006
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 93 caggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtc 152
||||||||||| | ||||||||| | || ||||||||||| | || ||| | |||||
Sbjct: 14714423 caggccatcgccagggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtc 14714364
Query: 153 gtcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagc 212
|||||| ||||| | || |||| |||| |||| ||||||| |||||||||||||||
Sbjct: 14714363 gtcgccaaggctcccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagc 14714304
Query: 213 gtttcgtcggcagacgctgtcttcctcaag 242
|| | ||||| |||||||||||||||||
Sbjct: 14714303 attccaccggcaaacgctgtcttcctcaag 14714274
Score = 58.0 bits (29), Expect = 8e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 411 tacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatcatcttt 470
||||||||| |||||| |||| |||| ||||||||| ||||||||||||| | || ||
Sbjct: 14976030 tacatcatgtttatcaatggtgccgagagagatgagcaagagtggaagaagcttttcctt 14976089
Query: 471 gaagccgggttta 483
||||| |||||||
Sbjct: 14976090 gaagctgggttta 14976102
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaa 292
|||||| |||||||||||||||| ||| ||||||||| |||| |||||
Sbjct: 14713033 gattatgcatgactggggtgatgacgaatgtgtcaaggtactaaagaa 14712986
Score = 56.0 bits (28), Expect = 3e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 422 tatcaacggtgtcgagcgagatgagcgagagtggaagaag 461
|||||| |||||||||||||||||| |||||||||||||
Sbjct: 14712856 tatcaatggtgtcgagcgagatgagaaagagtggaagaag 14712817
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 14974193 ttccaggggatcagctcgctggtcgacgtcgccggcggg 14974231
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 14750236 ttccaggggatcagctcgctggtcgacgtcgccggcggg 14750198
Score = 46.1 bits (23), Expect = 0.029
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 269 cgactgtgtcaagatactgaagaactgcaagaaggccat 307
||||||||||||||||||| |||||| ||||| |||||
Sbjct: 14975888 cgactgtgtcaagatactggggaactgtaagaaagccat 14975926
Score = 44.1 bits (22), Expect = 0.11
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 193 ccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
|||| |||||||| ||||| ||| | ||||| |||||||||||||||||
Sbjct: 14974347 ccggcgacatgtttgagagtgttccaccggcaaacgctgtcttcctcaag 14974396
>gb|AACV01024715.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024715, whole
genome shotgun sequence
Length = 7082
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 179 cgtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcct 238
|||| |||| |||||||| ||||||||||||||||| | ||||| |||||||||||||
Sbjct: 4883 cgtggagtacgtcgccggcgacatgttcgagagcgtcccaccggcaaacgctgtcttcct 4942
Query: 239 caag 242
||||
Sbjct: 4943 caag 4946
>emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC OSJNBa0037B01 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 133207
Score = 60.0 bits (30), Expect = 2e-006
Identities = 120/150 (80%)
Strand = Plus / Plus
Query: 93 caggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtc 152
||||||||||| | ||||||||| | || ||||||||||| | || ||| | |||||
Sbjct: 58660 caggccatcgccagggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtc 58719
Query: 153 gtcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagc 212
|||||| ||||| | || |||| |||| |||| ||||||| |||||||||||||||
Sbjct: 58720 gtcgccaaggctcccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagc 58779
Query: 213 gtttcgtcggcagacgctgtcttcctcaag 242
|| | ||||| |||||||||||||||||
Sbjct: 58780 attccaccggcaaacgctgtcttcctcaag 58809
Score = 56.0 bits (28), Expect = 3e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 422 tatcaacggtgtcgagcgagatgagcgagagtggaagaag 461
|||||| |||||||||||||||||| |||||||||||||
Sbjct: 60227 tatcaatggtgtcgagcgagatgagaaagagtggaagaag 60266
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaa 292
|||||| |||||||||||||||| ||| ||||||||| |||| |||||
Sbjct: 60050 gattatgcatgactggggtgatgacgaatgtgtcaaggtactaaagaa 60097
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 22847 ttccaggggatcagctcgctggtcgacgtcgccggcggg 22885
>gb|AACV01024695.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024695, whole
genome shotgun sequence
Length = 15878
Score = 60.0 bits (30), Expect = 2e-006
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 93 caggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtc 152
||||||||||| | ||||||||| | || ||||||||||| | || ||| | |||||
Sbjct: 6125 caggccatcgccagggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtc 6066
Query: 153 gtcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagc 212
|||||| ||||| | || |||| |||| |||| ||||||| |||||||||||||||
Sbjct: 6065 gtcgccaaggctcccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagc 6006
Query: 213 gtttcgtcggcagacgctgtcttcctcaag 242
|| | ||||| |||||||||||||||||
Sbjct: 6005 attccaccggcaaacgctgtcttcctcaag 5976
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaa 292
|||||| |||||||||||||||| ||| ||||||||| |||| |||||
Sbjct: 4735 gattatgcatgactggggtgatgacgaatgtgtcaaggtactaaagaa 4688
Score = 56.0 bits (28), Expect = 3e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 422 tatcaacggtgtcgagcgagatgagcgagagtggaagaag 461
|||||| |||||||||||||||||| |||||||||||||
Sbjct: 4558 tatcaatggtgtcgagcgagatgagaaagagtggaagaag 4519
>gb|AACV01024681.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024681, whole
genome shotgun sequence
Length = 21233
Score = 58.0 bits (29), Expect = 8e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 411 tacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatcatcttt 470
||||||||| |||||| |||| |||| ||||||||| ||||||||||||| | || ||
Sbjct: 15653 tacatcatgtttatcaatggtgccgagagagatgagcaagagtggaagaagcttttcctt 15594
Query: 471 gaagccgggttta 483
||||| |||||||
Sbjct: 15593 gaagctgggttta 15581
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 17490 ttccaggggatcagctcgctggtcgacgtcgccggcggg 17452
Score = 46.1 bits (23), Expect = 0.029
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 269 cgactgtgtcaagatactgaagaactgcaagaaggccat 307
||||||||||||||||||| |||||| ||||| |||||
Sbjct: 15795 cgactgtgtcaagatactggggaactgtaagaaagccat 15757
Score = 44.1 bits (22), Expect = 0.11
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 193 ccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
|||| |||||||| ||||| ||| | ||||| |||||||||||||||||
Sbjct: 17336 ccggcgacatgtttgagagtgttccaccggcaaacgctgtcttcctcaag 17287
>emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC OSJNBa0041M09 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 146519
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 123933 ttccaggggatcagctcgctggtcgacgtcgccggcggg 123971
>gb|AACV01024698.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024698, whole
genome shotgun sequence
Length = 20844
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcggg 77
||||||||||||||||| || |||||||||| |||||||
Sbjct: 8237 ttccaggggatcagctcgctggtcgacgtcgccggcggg 8199
>gb|AU182423.1|AU182423 AU182423 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2752, mRNA sequence
Length = 456
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 316 aaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtc 364
||||||| ||||||||||| ||||||| ||||| ||||||||| ||||
Sbjct: 21 aaggaggaaaggtgataatcatggatatagtggtcggagcaggaccgtc 69
>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10,
complete sequence
Length = 143073
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 10145 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 10093
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 316 aaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtc 364
||||||| ||||||||||| ||||||| ||||| ||||||||| ||||
Sbjct: 5814 aaggaggaaaggtgataatcatggatatagtggtcggagcaggaccgtc 5862
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 5330 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 5382
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 250 tacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaa 301
||||||||||||| |||| ||| || |||||||| | ||||||||||||||
Sbjct: 5742 tacatgactggggcgatgacgattgcatcaagatattaaagaactgcaagaa 5793
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06,
complete sequence
Length = 142068
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 104388 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 104336
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 316 aaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtc 364
||||||| ||||||||||| ||||||| ||||| ||||||||| ||||
Sbjct: 100057 aaggaggaaaggtgataatcatggatatagtggtcggagcaggaccgtc 100105
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 99573 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 99625
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 250 tacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaa 301
||||||||||||| |||| ||| || |||||||| | ||||||||||||||
Sbjct: 99985 tacatgactggggcgatgacgattgcatcaagatattaaagaactgcaagaa 100036
>gb|AACV01012559.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012559, whole
genome shotgun sequence
Length = 17440
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 13318 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 13266
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 316 aaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtc 364
||||||| ||||||||||| ||||||| ||||| ||||||||| ||||
Sbjct: 9012 aaggaggaaaggtgataatcatggatatagtggtcggagcaggaccgtc 9060
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 8528 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 8580
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 250 tacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaa 301
||||||||||||| |||| ||| || |||||||| | ||||||||||||||
Sbjct: 8940 tacatgactggggcgatgacgattgcatcaagatattaaagaactgcaagaa 8991
>gb|AACV01013578.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013578,
whole genome shotgun sequence
Length = 754
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 52 gctccctcgtcgacgtcggcggcgg 76
|||||||||||||||||||||||||
Sbjct: 304 gctccctcgtcgacgtcggcggcgg 280
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0063H02
Length = 152326
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 52 gctccctcgtcgacgtcggcggcgg 76
|||||||||||||||||||||||||
Sbjct: 41493 gctccctcgtcgacgtcggcggcgg 41469
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0456E06
Length = 164353
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 52 gctccctcgtcgacgtcggcggcgg 76
|||||||||||||||||||||||||
Sbjct: 135100 gctccctcgtcgacgtcggcggcgg 135076
>ref|NT_107217.1| Oryza sativa (japonica cultivar-group)
Length = 898765
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 438637 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 438585
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 316 aaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtc 364
||||||| ||||||||||| ||||||| ||||| ||||||||| ||||
Sbjct: 434306 aaggaggaaaggtgataatcatggatatagtggtcggagcaggaccgtc 434354
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 433822 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 433874
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 250 tacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaa 301
||||||||||||| |||| ||| || |||||||| | ||||||||||||||
Sbjct: 434234 tacatgactggggcgatgacgattgcatcaagatattaaagaactgcaagaa 434285
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047 genomic
scaffold, whole genome shotgun sequence
Length = 2656042
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 52 gctccctcgtcgacgtcggcggcgg 76
|||||||||||||||||||||||||
Sbjct: 1194345 gctccctcgtcgacgtcggcggcgg 1194321
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 7801344 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 7801292
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 316 aaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtc 364
||||||| ||||||||||| ||||||| ||||| ||||||||| ||||
Sbjct: 7797038 aaggaggaaaggtgataatcatggatatagtggtcggagcaggaccgtc 7797086
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 7796554 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 7796606
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 250 tacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaa 301
||||||||||||| |||| ||| || |||||||| | ||||||||||||||
Sbjct: 7796966 tacatgactggggcgatgacgattgcatcaagatattaaagaactgcaagaa 7797017
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 52 gctccctcgtcgacgtcggcggcgg 76
|||||||||||||||||||||||||
Sbjct: 9801997 gctccctcgtcgacgtcggcggcgg 9801973
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 49 tcagctccctcgtcgacgtcggcggcggg 77
||||||| || ||||||||||||||||||
Sbjct: 7297071 tcagctcgctggtcgacgtcggcggcggg 7297043
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 25101657 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 25101605
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 316 aaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtc 364
||||||| ||||||||||| ||||||| ||||| ||||||||| ||||
Sbjct: 25097351 aaggaggaaaggtgataatcatggatatagtggtcggagcaggaccgtc 25097399
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 25096867 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 25096919
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 250 tacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaa 301
||||||||||||| |||| ||| || |||||||| | ||||||||||||||
Sbjct: 25097279 tacatgactggggcgatgacgattgcatcaagatattaaagaactgcaagaa 25097330
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 25369784 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 25369732
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 316 aaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtc 364
||||||| ||||||||||| ||||||| ||||| ||||||||| ||||
Sbjct: 25365453 aaggaggaaaggtgataatcatggatatagtggtcggagcaggaccgtc 25365501
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 190 tcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||||| |||||||| ||||| || | |||||||||||||||||||||||
Sbjct: 25364969 tcgccggcgacatgtttgagagtgtgccaccggcagacgctgtcttcctcaag 25365021
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 250 tacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaa 301
||||||||||||| |||| ||| || |||||||| | ||||||||||||||
Sbjct: 25365381 tacatgactggggcgatgacgattgcatcaagatattaaagaactgcaagaa 25365432
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 52 gctccctcgtcgacgtcggcggcgg 76
|||||||||||||||||||||||||
Sbjct: 9844858 gctccctcgtcgacgtcggcggcgg 9844834
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 49 tcagctccctcgtcgacgtcggcggcggg 77
||||||| || ||||||||||||||||||
Sbjct: 7317741 tcagctcgctggtcgacgtcggcggcggg 7317713
>gb|AACV01016288.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016288, whole
genome shotgun sequence
Length = 34170
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 728 aataaatattaagatatttatt 749
||||||||||||||||||||||
Sbjct: 26729 aataaatattaagatatttatt 26750
>dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1197_D06
Length = 103844
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 728 aataaatattaagatatttatt 749
||||||||||||||||||||||
Sbjct: 79026 aataaatattaagatatttatt 79005
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 728 aataaatattaagatatttatt 749
||||||||||||||||||||||
Sbjct: 6277047 aataaatattaagatatttatt 6277026
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 728 aataaatattaagatatttatt 749
||||||||||||||||||||||
Sbjct: 4265005 aataaatattaagatatttatt 4264984
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 728 aataaatattaagatatttatt 749
||||||||||||||||||||||
Sbjct: 17664444 aataaatattaagatatttatt 17664423
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 728 aataaatattaagatatttatt 749
||||||||||||||||||||||
Sbjct: 18653972 aataaatattaagatatttatt 18653951
>dbj|AP004214.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1118_B07,
*** SEQUENCING IN PROGRESS ***
Length = 70957
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 48 atcagctccctcgtcgacgtcggcggcgg 76
||||||||||||| ||||| |||||||||
Sbjct: 61267 atcagctccctcgacgacgacggcggcgg 61239
>dbj|AK110418.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-H08, full
insert sequence
Length = 2172
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 48 atcagctccctcgtcgacgtcggcggcgg 76
||||||||||||| ||||| |||||||||
Sbjct: 1352 atcagctccctcgacgacgacggcggcgg 1380
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0544B02
Length = 156339
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 48 atcagctccctcgtcgacgtcggcggcgg 76
||||||||||||| ||||| |||||||||
Sbjct: 108830 atcagctccctcgacgacgacggcggcgg 108802
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0052G07
Length = 156207
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 49 tcagctccctcgtcgacgtcggcggcggg 77
||||||| || ||||||||||||||||||
Sbjct: 152745 tcagctcgctggtcgacgtcggcggcggg 152717
>dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0001B11
Length = 166004
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 49 tcagctccctcgtcgacgtcggcggcggg 77
||||||| || ||||||||||||||||||
Sbjct: 24326 tcagctcgctggtcgacgtcggcggcggg 24298
>gb|AACV01003479.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003479, whole
genome shotgun sequence
Length = 53225
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 48 atcagctccctcgtcgacgtcggcggcgg 76
||||||||||||| ||||| |||||||||
Sbjct: 20618 atcagctccctcgacgacgacggcggcgg 20590
>gb|AACV01013392.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013392, whole
genome shotgun sequence
Length = 7686
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 49 tcagctccctcgtcgacgtcggcggcggg 77
||||||| || ||||||||||||||||||
Sbjct: 5400 tcagctcgctggtcgacgtcggcggcggg 5372
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 49 tcagctccctcgtcgacgtcggcggcggg 77
||||||| || ||||||||||||||||||
Sbjct: 3009321 tcagctcgctggtcgacgtcggcggcggg 3009293
>ref|NT_107176.1| Oryza sativa (japonica cultivar-group)
Length = 1593847
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 48 atcagctccctcgtcgacgtcggcggcgg 76
||||||||||||| ||||| |||||||||
Sbjct: 1391114 atcagctccctcgacgacgacggcggcgg 1391086
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 49 tcagctccctcgtcgacgtcggcggcggg 77
||||||| || ||||||||||||||||||
Sbjct: 7297071 tcagctcgctggtcgacgtcggcggcggg 7297043
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 48 atcagctccctcgtcgacgtcggcggcgg 76
||||||||||||| ||||| |||||||||
Sbjct: 4506795 atcagctccctcgacgacgacggcggcgg 4506767
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 48 atcagctccctcgtcgacgtcggcggcgg 76
||||||||||||| ||||| |||||||||
Sbjct: 4506795 atcagctccctcgacgacgacggcggcgg 4506767
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 48 atcagctccctcgtcgacgtcggcggcgg 76
||||||||||||| ||||| |||||||||
Sbjct: 4425266 atcagctccctcgacgacgacggcggcgg 4425238
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,364,758
Number of Sequences: 438736
Number of extensions: 1364758
Number of successful extensions: 12107
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11446
Number of HSP's gapped (non-prelim): 661
length of query: 791
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 770
effective length of database: 2,791,206,460
effective search space: 2149228974200
effective search space used: 2149228974200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)