BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440612.2.2
(665 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|C74088.1|C74088 C74088 Rice panicle shorter than 3cm Ory... 244 5e-062
gb|AU030986.1|AU030986 AU030986 Rice cDNA from immature lea... 244 5e-062
gb|AU078247.1|AU078247 AU078247 Rice cDNA from immature lea... 244 5e-062
gb|CF326545.1|CF326545 JMT1--06-F17.g1 AtJMT-overexpressing... 244 5e-062
gb|CV726254.1|CV726254 14Salt--03-M18.b1 Salt treated rice ... 244 5e-062
gb|CV726362.1|CV726362 14Salt--03-P05.b1 Salt treated rice ... 244 5e-062
dbj|AK121915.1| Oryza sativa (japonica cultivar-group) cDNA... 244 5e-062
ref|XM_466875.1| Oryza sativa (japonica cultivar-group), mRNA 244 5e-062
gb|AU030016.2|AU030016 AU030016 Rice cDNA from immature lea... 232 2e-058
gb|AU029936.1|AU029936 AU029936 Rice cDNA from immature lea... 228 3e-057
gb|AU078246.1|AU078246 AU078246 Rice cDNA from immature lea... 228 3e-057
gb|AU078248.1|AU078248 AU078248 Rice cDNA from immature lea... 228 3e-057
gb|AU031270.1|AU031270 AU031270 Rice cDNA from immature lea... 226 1e-056
gb|AU078240.1|AU078240 AU078240 Rice cDNA from immature lea... 224 5e-056
gb|AU029891.1|AU029891 AU029891 Rice cDNA from immature lea... 222 2e-055
gb|AU065648.2|AU065648 AU065648 Rice cDNA from immature lea... 222 2e-055
gb|AU078210.1|AU078210 AU078210 Rice panicle shorter than 3... 220 7e-055
dbj|AP004889.1| Oryza sativa (japonica cultivar-group) chro... 220 7e-055
dbj|AP006168.3| Oryza sativa (japonica cultivar-group) geno... 220 7e-055
gb|AACV01004969.1| Oryza sativa (japonica cultivar-group) c... 220 7e-055
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 220 7e-055
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 220 7e-055
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 220 7e-055
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 220 7e-055
gb|C74193.1|C74193 C74193 Rice panicle shorter than 3cm Ory... 218 3e-054
gb|AU058417.1|AU058417 AU058417 Oryza sativa Nipponbare imm... 208 3e-051
gb|AU030229.1|AU030229 AU030229 Rice cDNA from immature lea... 204 4e-050
gb|AU030034.1|AU030034 AU030034 Rice cDNA from immature lea... 202 2e-049
gb|AU065605.1|AU065605 AU065605 Rice cDNA from immature lea... 202 2e-049
gb|AU029850.1|AU029850 AU029850 Rice cDNA from immature lea... 198 3e-048
gb|AU078249.1|AU078249 AU078249 Rice cDNA from immature lea... 196 1e-047
gb|AU077695.1|AU077695 AU077695 Rice cDNA from immature lea... 188 3e-045
gb|AU065599.2|AU065599 AU065599 Rice cDNA from immature lea... 186 1e-044
gb|AU029937.1|AU029937 AU029937 Rice cDNA from immature lea... 167 1e-038
gb|AU031269.1|AU031269 AU031269 Rice cDNA from immature lea... 161 6e-037
ref|XM_473224.1| Oryza sativa (japonica cultivar-group), p... 94 1e-016
gb|AACV01010142.1| Oryza sativa (japonica cultivar-group) c... 78 7e-012
ref|NT_079864.2| Oryza sativa (japonica cultivar-group) 78 7e-012
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 78 7e-012
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 78 7e-012
emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromoso... 78 7e-012
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 78 7e-012
gb|AU078238.1|AU078238 AU078238 Rice immature leaf includin... 74 1e-010
gb|C19871.1|C19871 C19871 Rice panicle at ripening stage Or... 54 1e-004
gb|C20129.1|C20129 C20129 Rice panicle at ripening stage Or... 54 1e-004
gb|C20296.1|C20296 C20296 Rice panicle at ripening stage Or... 54 1e-004
gb|C73591.1|C73591 C73591 Rice panicle at ripening stage Or... 54 1e-004
gb|AU078199.1|AU078199 AU078199 Rice panicle at ripening st... 54 1e-004
gb|AU078201.1|AU078201 AU078201 Rice panicle at ripening st... 54 1e-004
gb|AU078203.1|AU078203 AU078203 Rice panicle at ripening st... 54 1e-004
gb|AU078204.1|AU078204 AU078204 Rice panicle at ripening st... 54 1e-004
gb|AU078217.1|AU078217 AU078217 Rice panicle (between 3cm t... 54 1e-004
gb|CA758816.1|CA758816 BR030027000_PLATE_A05_33_035.ab1 OA ... 54 1e-004
dbj|AP000615.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AK120826.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
gb|AACV01005802.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 54 1e-004
ref|XM_493820.1| Oryza sativa (japonica cultivar-group), p... 54 1e-004
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|C20167.1|C20167 C20167 Rice panicle at ripening stage Or... 52 4e-004
gb|AU069800.1|AU069800 AU069800 Rice panicle at flowering s... 52 4e-004
gb|AU031513.1|AU031513 AU031513 Rice cDNA from immature lea... 48 0.006
gb|AU172733.1|AU172733 AU172733 Rice panicle at ripening st... 48 0.006
gb|AU078242.1|AU078242 AU078242 Rice cDNA from immature lea... 46 0.024
gb|AY872479.1|AY872479 01ET3_348_B_002_014_006A11 Oryza sat... 44 0.095
gb|C20017.1|C20017 C20017 Rice panicle at ripening stage Or... 44 0.095
gb|C99399.1|C99399 C99399 Rice panicle at ripening stage Or... 44 0.095
gb|C20037.2|C20037 C20037 Rice panicle at ripening stage Or... 44 0.095
gb|C74546.2|C74546 C74546 Rice panicle shorter than 3cm Ory... 44 0.095
dbj|AK071283.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.095
dbj|AK072380.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.095
emb|AL662939.4|OSJN00143 Oryza sativa genomic DNA, chromoso... 44 0.095
gb|AACV01008884.1| Oryza sativa (japonica cultivar-group) c... 44 0.095
ref|NT_107203.1| Oryza sativa (japonica cultivar-group) 44 0.095
gb|CH401188.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.095
dbj|AK061796.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.38
dbj|AK068802.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.38
dbj|AK100080.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.38
dbj|AK101312.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.38
dbj|AK108902.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.38
gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbar... 42 0.38
gb|AC113338.1| Oryza sativa (japonica cultivar-group) culti... 42 0.38
gb|AC116926.1| Genomic sequence for Oryza sativa (japonica ... 42 0.38
gb|AC134516.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|AC144738.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
dbj|AP003514.3| Oryza sativa (japonica cultivar-group) geno... 42 0.38
dbj|AP004280.3| Oryza sativa (japonica cultivar-group) geno... 42 0.38
gb|AACV01002980.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
gb|AACV01006679.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
gb|AACV01010058.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
gb|AACV01011013.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
gb|AACV01013208.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
gb|AACV01021375.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.38
ref|NM_189991.1| Oryza sativa (japonica cultivar-group), p... 42 0.38
ref|NM_196133.1| Oryza sativa (japonica cultivar-group) hyp... 42 0.38
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 42 0.38
ref|XM_473057.1| Oryza sativa (japonica cultivar-group), p... 42 0.38
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 42 0.38
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 42 0.38
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 42 0.38
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 42 0.38
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 42 0.38
dbj|AP004332.3| Oryza sativa (japonica cultivar-group) geno... 42 0.38
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC... 42 0.38
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.38
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.38
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 42 0.38
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 42 0.38
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 42 0.38
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
>gb|C74088.1|C74088 C74088 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30363_1A, mRNA sequence
Length = 465
Score = 244 bits (123), Expect = 5e-062
Identities = 177/195 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 298 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 239
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 238 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 179
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 178 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 119
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 118 ctgtggcgacgagga 104
>gb|AU030986.1|AU030986 AU030986 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60529_2Z, mRNA sequence
Length = 591
Score = 244 bits (123), Expect = 5e-062
Identities = 177/195 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 304 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 245
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 244 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 185
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 184 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 125
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 124 ctgtggcgacgagga 110
>gb|AU078247.1|AU078247 AU078247 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61767_1A, mRNA sequence
Length = 475
Score = 244 bits (123), Expect = 5e-062
Identities = 177/195 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 320 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 261
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 260 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 201
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 200 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 141
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 140 ctgtggcgacgagga 126
>gb|CF326545.1|CF326545 JMT1--06-F17.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--06-F17, mRNA sequence
Length = 610
Score = 244 bits (123), Expect = 5e-062
Identities = 177/195 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 324 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 265
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 264 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 205
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 145
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 144 ctgtggcgacgagga 130
>gb|CV726254.1|CV726254 14Salt--03-M18.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--03-M18, mRNA sequence
Length = 490
Score = 244 bits (123), Expect = 5e-062
Identities = 177/195 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 335 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 276
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 275 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 216
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 215 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 156
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 155 ctgtggcgacgagga 141
>gb|CV726362.1|CV726362 14Salt--03-P05.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--03-P05, mRNA sequence
Length = 493
Score = 244 bits (123), Expect = 5e-062
Identities = 177/195 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 335 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 276
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 275 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 216
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 215 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 156
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 155 ctgtggcgacgagga 141
>dbj|AK121915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C08, full
insert sequence
Length = 603
Score = 244 bits (123), Expect = 5e-062
Identities = 177/195 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 332 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 273
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 272 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 213
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 212 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 153
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 152 ctgtggcgacgagga 138
>ref|XM_466875.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 603
Score = 244 bits (123), Expect = 5e-062
Identities = 177/195 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 332 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 273
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 272 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 213
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 212 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 153
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 152 ctgtggcgacgagga 138
>gb|AU030016.2|AU030016 AU030016 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50501_2Z, mRNA sequence
Length = 708
Score = 232 bits (117), Expect = 2e-058
Identities = 175/195 (89%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 406 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 347
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 346 cggggaagctctccgtcctgcacacgttggcgcagttgttgcngctcacgcacatgccct 287
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 286 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccntggtcgtccccatct 227
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 226 ctgtggcgacgagga 212
>gb|AU029936.1|AU029936 AU029936 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50284_1A, mRNA sequence
Length = 460
Score = 228 bits (115), Expect = 3e-057
Identities = 176/195 (90%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 278 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 219
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 218 cggggaagctctccgtcctgcacacgttggcgcagttgttgctg-tcacgcacatgccct 160
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 159 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 100
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 99 ctgtggcgacgagga 85
>gb|AU078246.1|AU078246 AU078246 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61655_3A, mRNA sequence
Length = 605
Score = 228 bits (115), Expect = 3e-057
Identities = 176/195 (90%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 319 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 260
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 259 cggggaagctctccgtcctgcacacgttggcgcagttgttgctg-tcacgcacatgccct 201
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 200 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 141
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 140 ctgtggcgacgagga 126
>gb|AU078248.1|AU078248 AU078248 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61775_1A, mRNA sequence
Length = 526
Score = 228 bits (115), Expect = 3e-057
Identities = 176/195 (90%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 319 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 260
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 259 cggggaagctctccgtcctgcacacgttggcgcagttgttgctg-tcacgcacatgccct 201
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 200 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 141
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 140 ctgtggcgacgagga 126
>gb|AU031270.1|AU031270 AU031270 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61252_3A, mRNA sequence
Length = 346
Score = 226 bits (114), Expect = 1e-056
Identities = 164/181 (90%)
Strand = Plus / Minus
Query: 315 ttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgccggggaagttctcg 374
|||||||||||||||||| | ||| | || ||||||||||||| |||||||| ||||
Sbjct: 274 ttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgtcggggaagctctcc 215
Query: 375 gtctggcacacgttggcgcagttgttgctgctcatgcacaggcccttgaaccggtggctc 434
||| |||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||
Sbjct: 214 gtcctgcacacgttggcgcagttgttgntgctcacgcacatgcccttgaacctgtggctc 155
Query: 435 tgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagctctgtggcgacgagg 494
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 154 tgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatctctgtggcgacgagg 95
Query: 495 a 495
|
Sbjct: 94 a 94
>gb|AU078240.1|AU078240 AU078240 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60529_1A, mRNA sequence
Length = 427
Score = 224 bits (113), Expect = 5e-056
Identities = 168/185 (90%), Gaps = 1/185 (0%)
Strand = Plus / Minus
Query: 311 cttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgccggggaagtt 370
|||||||||||||||||||||| | ||| | || ||||||||||||| |||||||| |
Sbjct: 309 cttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgtcggggaagct 250
Query: 371 ctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggcccttgaaccggtg 430
||| ||| ||||||||||||||||||||||||| ||| ||||| ||||||||||| |||
Sbjct: 249 ctccgtcctgcacacgttggcgcagttgttgctg-tcacgcacatgcccttgaacctgtg 191
Query: 431 gctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagctctgtggcgac 490
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 190 gctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatctctgtggcgac 131
Query: 491 gagga 495
|||||
Sbjct: 130 gagga 126
>gb|AU029891.1|AU029891 AU029891 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50130_1A, mRNA sequence
Length = 358
Score = 222 bits (112), Expect = 2e-055
Identities = 175/195 (89%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 320 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 261
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| |||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 260 cggggaagctctccgtcctgcacacgttggcgcagttgttgctn-tcacgcacatgccct 202
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 142
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 141 ctgtggcgacgagga 127
>gb|AU065648.2|AU065648 AU065648 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50787_1A, mRNA sequence
Length = 364
Score = 222 bits (112), Expect = 2e-055
Identities = 175/195 (89%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 311 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 252
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| |||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 251 cggggaagctctccgtcctgcacacgttggcgcagttgttgctn-tcacgcacatgccct 193
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 192 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 133
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 132 ctgtggcgacgagga 118
>gb|AU078210.1|AU078210 AU078210 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30618_8Z, mRNA sequence
Length = 510
Score = 220 bits (111), Expect = 7e-055
Identities = 173/195 (88%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | ||||||||| |||||||||||| | ||| | || |||||||||||||
Sbjct: 216 actagcagaccttcttgcanaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 157
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| | || ||| ||||||||||||||||||||||||||| | ||||| |||||
Sbjct: 156 cggggaagctntccgtcctgcacacgttggcgcagttgttgctgctnacgcacatgccct 97
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 96 tgaacctgtggctntgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 37
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 36 ctgtggcgacgagga 22
>dbj|AP004889.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0661A05, ***
SEQUENCING IN PROGRESS ***
Length = 144581
Score = 220 bits (111), Expect = 7e-055
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 128794 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 128735
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 128734 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 128675
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 128674 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 128615
Query: 481 ctg 483
|||
Sbjct: 128614 ctg 128612
Score = 129 bits (65), Expect = 2e-027
Identities = 125/145 (86%)
Strand = Plus / Minus
Query: 311 cttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgccggggaagtt 370
|||||||||||||||||||||| | ||||| | ||||||||| ||| |||||||| |
Sbjct: 130173 cttcttgcagaagcacttgcgctcgaagccctgccacttgcactccccgtcggggaagct 130114
Query: 371 ctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggcccttgaaccggtg 430
||| || ||||||||||||||| ||||||||||| | ||||| ||||||||||| |||
Sbjct: 130113 ctccctcctgcacacgttggcgcaattgttgctgcttacgcacatgcccttgaacctgtg 130054
Query: 431 gctctgcgacaggcagtgcctcgcc 455
||||||||||||||| |||||||||
Sbjct: 130053 gctctgcgacaggcaatgcctcgcc 130029
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:B1469H02
Length = 136602
Score = 220 bits (111), Expect = 7e-055
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 109803 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 109744
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 109743 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 109684
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 109683 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 109624
Query: 481 ctg 483
|||
Sbjct: 109623 ctg 109621
>gb|AACV01004969.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004969, whole
genome shotgun sequence
Length = 9711
Score = 220 bits (111), Expect = 7e-055
Identities = 165/183 (90%)
Strand = Plus / Plus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 4198 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 4257
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 4258 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 4317
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4318 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 4377
Query: 481 ctg 483
|||
Sbjct: 4378 ctg 4380
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 220 bits (111), Expect = 7e-055
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 374409 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 374350
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 374349 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 374290
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 374289 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 374230
Query: 481 ctg 483
|||
Sbjct: 374229 ctg 374227
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 220 bits (111), Expect = 7e-055
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 11543494 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 11543435
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 11543434 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 11543375
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 11543374 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 11543315
Query: 481 ctg 483
|||
Sbjct: 11543314 ctg 11543312
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 220 bits (111), Expect = 7e-055
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 24996558 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 24996499
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 24996498 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 24996439
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 24996438 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 24996379
Query: 481 ctg 483
|||
Sbjct: 24996378 ctg 24996376
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 220 bits (111), Expect = 7e-055
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 25209410 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 25209351
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 25209350 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 25209291
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 25209290 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatct 25209231
Query: 481 ctg 483
|||
Sbjct: 25209230 ctg 25209228
>gb|C74193.1|C74193 C74193 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30618_2A, mRNA sequence
Length = 331
Score = 218 bits (110), Expect = 3e-054
Identities = 167/185 (90%), Gaps = 1/185 (0%)
Strand = Plus / Minus
Query: 311 cttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgccggggaagtt 370
||||||||||||| |||||||| | ||| | || ||||||||||||| |||||||| |
Sbjct: 262 cttcttgcagaagnacttgcgctcgaggccgtgcgacttgcactcgccgtcggggaagct 203
Query: 371 ctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggcccttgaaccggtg 430
||| ||| ||||||||||||||||||||||||| ||| ||||| ||||||||||| |||
Sbjct: 202 ctccgtcctgcacacgttggcgcagttgttgctg-tcacgcacatgcccttgaacctgtg 144
Query: 431 gctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagctctgtggcgac 490
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 143 gctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatctctgtggcgac 84
Query: 491 gagga 495
|||||
Sbjct: 83 gagga 79
>gb|AU058417.1|AU058417 AU058417 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E51109_1A, mRNA
sequence
Length = 421
Score = 208 bits (105), Expect = 3e-051
Identities = 175/196 (89%), Gaps = 2/196 (1%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 312 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 253
Query: 361 cggggaagttctcggtctggcacacgttggcgca-gttgttgctgctcatgcacaggccc 419
|||||||| |||| ||| ||||||||||||||| ||||||||| ||| ||||| ||||
Sbjct: 252 cggggaagctctccgtcctgcacacgttggcgcaagttgttgctn-tcacgcacatgccc 194
Query: 420 ttgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagc 479
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 193 ttgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccatc 134
Query: 480 tctgtggcgacgagga 495
||||||||||||||||
Sbjct: 133 tctgtggcgacgagga 118
>gb|AU030229.1|AU030229 AU030229 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50787_2Z, mRNA sequence
Length = 657
Score = 204 bits (103), Expect = 4e-050
Identities = 170/195 (87%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 329 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 270
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| || | ||| ||||||||||||||| ||||||||||| | ||||| |||||
Sbjct: 269 cggggaagctcnccgtcctgcacacgttggcgcanttgttgctgctnangcacatgccct 210
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||| ||||||||||||| ||||| || |||||||||||||| ||
Sbjct: 209 tgaacctgtggctctgcganaggcagtgcctcgnctccgncancttggtcgtccccatct 150
Query: 481 ctgtggcgacgagga 495
|||||||||||||||
Sbjct: 149 ctgtggcgacgagga 135
>gb|AU030034.1|AU030034 AU030034 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50527_2Z, mRNA sequence
Length = 713
Score = 202 bits (102), Expect = 2e-049
Identities = 170/195 (87%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 396 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 337
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| | | ||||||||||||||||||||||||| ||||| |||||
Sbjct: 336 cggggaagctctccgtcctgnanacgttggcgcagttgttgctgctcacgcacatgccct 277
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||| ||| |||||||||||||||| |||||||||||||||| ||
Sbjct: 276 tgaacctgtggctctgcganaggnagtgcctcgcctccgcnaccttggtcgtccccatct 217
Query: 481 ctgtggcgacgagga 495
||||||| | |||||
Sbjct: 216 ctgtggcnangagga 202
>gb|AU065605.1|AU065605 AU065605 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50527_1A, mRNA sequence
Length = 422
Score = 202 bits (102), Expect = 2e-049
Identities = 138/149 (92%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 347 cttgcactcgccgccggggaagttctcggtctggcacacgttggcgcagttgttgctgct 406
||||||||||||| |||||||| |||| ||| |||||||||||||||||||||||| |
Sbjct: 251 cttgcactcgccgtcggggaagctctccgtcctgcacacgttggcgcagttgttgctn-t 193
Query: 407 catgcacaggcccttgaaccggtggctctgcgacaggcagtgcctcgcctccgccacctt 466
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cacgcacatgcccttgaacctgtggctctgcgacaggcagtgcctcgcctccgccacctt 133
Query: 467 ggtcgtccccagctctgtggcgacgagga 495
||||||||||| |||||||||||||||||
Sbjct: 132 ggtcgtccccatctctgtggcgacgagga 104
>gb|AU029850.1|AU029850 AU029850 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50028_1A, mRNA sequence
Length = 414
Score = 198 bits (100), Expect = 3e-048
Identities = 136/147 (92%), Gaps = 1/147 (0%)
Strand = Plus / Minus
Query: 349 tgcactcgccgccggggaagttctcggtctggcacacgttggcgcagttgttgctgctca 408
||||||||||| |||||||| |||| ||| |||||||||||||||||||||||| |||
Sbjct: 267 tgcactcgccgtcggggaagctctccgtcctgcacacgttggcgcagttgttgctn-tca 209
Query: 409 tgcacaggcccttgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttgg 468
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 cgcacatgcccttgaacctgtggctctgcgacaggcagtgcctcgcctccgccaccttgg 149
Query: 469 tcgtccccagctctgtggcgacgagga 495
||||||||| |||||||||||||||||
Sbjct: 148 tcgtccccatctctgtggcgacgagga 122
>gb|AU078249.1|AU078249 AU078249 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61775_2Z, mRNA sequence
Length = 469
Score = 196 bits (99), Expect = 1e-047
Identities = 161/183 (87%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 183 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 124
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||| ||||||||||||||||||||||||| ||||| |||||
Sbjct: 123 cggggaagctctccgtcctgcanacgttggcgcagttgttgctgctcangcacatgccct 64
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagct 480
|||||| |||||||||||| ||||||||||||||||||| || |||||||||||||| ||
Sbjct: 63 tgaacctgtggctctgcganaggcagtgcctcgcctccggcancttggtcgtccccatct 4
Query: 481 ctg 483
|||
Sbjct: 3 ctg 1
>gb|AU077695.1|AU077695 AU077695 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50028_2Z, mRNA sequence
Length = 450
Score = 188 bits (95), Expect = 3e-045
Identities = 146/163 (89%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 163 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 104
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 103 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 44
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcctccgccac 463
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 43 tgaacctgtggctctgcgacaggcagtgcctcgcctccgccac 1
>gb|AU065599.2|AU065599 AU065599 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50501_1A, mRNA sequence
Length = 315
Score = 186 bits (94), Expect = 1e-044
Identities = 137/149 (91%), Gaps = 2/149 (1%)
Strand = Plus / Minus
Query: 347 cttgcactcgccgccggggaagttctcggtctggcacacgttggcgcagttgttgctgct 406
||||||||||||| ||||||| | ||| ||| |||||||||||||||||||||||| |
Sbjct: 248 cttgcactcgccgtcggggaact-ctccgtcctgcacacgttggcgcagttgttgctn-t 191
Query: 407 catgcacaggcccttgaaccggtggctctgcgacaggcagtgcctcgcctccgccacctt 466
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cacgcacatgcccttgaacctgtggctctgcgacaggcagtgcctcgcctccgccacctt 131
Query: 467 ggtcgtccccagctctgtggcgacgagga 495
||||||||||| |||||||||||||||||
Sbjct: 130 ggtcgtccccatctctgtggcgacgagga 102
>gb|AU029937.1|AU029937 AU029937 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50284_2Z, mRNA sequence
Length = 464
Score = 167 bits (84), Expect = 1e-038
Identities = 137/155 (88%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||||||||||||| | ||| | || |||||||||||||
Sbjct: 155 actagcagaccttcttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgt 96
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 95 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcacatgccct 36
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcc 455
|||||| |||||||||||||||| |||||||||||
Sbjct: 35 tgaacctgtggctctgcgacaggnagtgcctcgcc 1
>gb|AU031269.1|AU031269 AU031269 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61252_2Z, mRNA sequence
Length = 477
Score = 161 bits (81), Expect = 6e-037
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgc 360
||||||| | |||||||||||| ||||||||| | ||| | || |||||||||||||
Sbjct: 155 actagcagaccttcttgcagaancacttgcgctcgaggccgtgcgacttgcactcgccgt 96
Query: 361 cggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccct 420
|||||||| |||| ||| ||||||||||||||||||||||||||||| ||| | |||||
Sbjct: 95 cggggaagctctccgtcctgcacacgttggcgcagttgttgctgctcacgcanatgccct 36
Query: 421 tgaaccggtggctctgcgacaggcagtgcctcgcc 455
|||||| ||||||||||||||||||||||||||||
Sbjct: 35 tgaacctgtggctctgcgacaggcagtgcctcgcc 1
>ref|XM_473224.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 246
Score = 93.7 bits (47), Expect = 1e-016
Identities = 80/91 (87%)
Strand = Plus / Minus
Query: 405 ctcatgcacaggcccttgaaccggtggctctgcgacaggcagtgcctcgcctccgccacc 464
||||||||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct: 143 ctcatgcacgcgcccacgaacctgtggctctgcgacacgcaatgcctcgcctccgccacc 84
Query: 465 ttggtcgtccccagctctgtggcgacgagga 495
| |||||||||| ||||| |||||||||||
Sbjct: 83 ctcgtcgtccccatctctgaggcgacgagga 53
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 311 cttcttgcagaagcacttgcgc 332
||||||||||||||||||||||
Sbjct: 237 cttcttgcagaagcacttgcgc 216
>gb|AACV01010142.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010142, whole
genome shotgun sequence
Length = 12300
Score = 77.8 bits (39), Expect = 7e-012
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 405 ctcatgcacaggcccttgaaccggtggctctgcgacaggcagtgcctcgcctccgccacc 464
||||||||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct: 3161 ctcatgcacgcgcccacgaacctgtggctctgcgacacgcaatgcctcgcctccgccacc 3220
Query: 465 ttggtcgtccccagctctg 483
| |||||||||| |||||
Sbjct: 3221 ctcgtcgtccccatctctg 3239
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 311 cttcttgcagaagcacttgcgc 332
||||||||||||||||||||||
Sbjct: 3067 cttcttgcagaagcacttgcgc 3088
>ref|NT_079864.2| Oryza sativa (japonica cultivar-group)
Length = 1076642
Score = 77.8 bits (39), Expect = 7e-012
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 405 ctcatgcacaggcccttgaaccggtggctctgcgacaggcagtgcctcgcctccgccacc 464
||||||||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct: 1042055 ctcatgcacgcgcccacgaacctgtggctctgcgacacgcaatgcctcgcctccgccacc 1041996
Query: 465 ttggtcgtccccagctctg 483
| |||||||||| |||||
Sbjct: 1041995 ctcgtcgtccccatctctg 1041977
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 311 cttcttgcagaagcacttgcgc 332
||||||||||||||||||||||
Sbjct: 1042149 cttcttgcagaagcacttgcgc 1042128
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 77.8 bits (39), Expect = 7e-012
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 405 ctcatgcacaggcccttgaaccggtggctctgcgacaggcagtgcctcgcctccgccacc 464
||||||||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct: 3903216 ctcatgcacgcgcccacgaacctgtggctctgcgacacgcaatgcctcgcctccgccacc 3903157
Query: 465 ttggtcgtccccagctctg 483
| |||||||||| |||||
Sbjct: 3903156 ctcgtcgtccccatctctg 3903138
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 311 cttcttgcagaagcacttgcgc 332
||||||||||||||||||||||
Sbjct: 3903310 cttcttgcagaagcacttgcgc 3903289
Score = 42.1 bits (21), Expect = 0.38
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 491 gaggaggagcaggaggacgaggacg 515
||||||||| |||||||||||||||
Sbjct: 2827371 gaggaggagaaggaggacgaggacg 2827347
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 77.8 bits (39), Expect = 7e-012
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 405 ctcatgcacaggcccttgaaccggtggctctgcgacaggcagtgcctcgcctccgccacc 464
||||||||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct: 23047315 ctcatgcacgcgcccacgaacctgtggctctgcgacacgcaatgcctcgcctccgccacc 23047256
Query: 465 ttggtcgtccccagctctg 483
| |||||||||| |||||
Sbjct: 23047255 ctcgtcgtccccatctctg 23047237
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 311 cttcttgcagaagcacttgcgc 332
||||||||||||||||||||||
Sbjct: 23047409 cttcttgcagaagcacttgcgc 23047388
Score = 44.1 bits (22), Expect = 0.095
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 349 tgcactcgccgccggggaagttctcggtctggcacacgttggcgcagttg 398
|||||| ||| |||| |||| ||| ||| ||||||||||||||||||||
Sbjct: 6325623 tgcacttgcctccggagaagccctcagtcaggcacacgttggcgcagttg 6325574
Score = 42.1 bits (21), Expect = 0.38
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 491 gaggaggagcaggaggacgaggacg 515
||||||||| |||||||||||||||
Sbjct: 21971470 gaggaggagaaggaggacgaggacg 21971446
>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
complete sequence
Length = 163039
Score = 77.8 bits (39), Expect = 7e-012
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 405 ctcatgcacaggcccttgaaccggtggctctgcgacaggcagtgcctcgcctccgccacc 464
||||||||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct: 128452 ctcatgcacgcgcccacgaacctgtggctctgcgacacgcaatgcctcgcctccgccacc 128393
Query: 465 ttggtcgtccccagctctg 483
| |||||||||| |||||
Sbjct: 128392 ctcgtcgtccccatctctg 128374
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 311 cttcttgcagaagcacttgcgc 332
||||||||||||||||||||||
Sbjct: 128546 cttcttgcagaagcacttgcgc 128525
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 77.8 bits (39), Expect = 7e-012
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 405 ctcatgcacaggcccttgaaccggtggctctgcgacaggcagtgcctcgcctccgccacc 464
||||||||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct: 26094125 ctcatgcacgcgcccacgaacctgtggctctgcgacacgcaatgcctcgcctccgccacc 26094066
Query: 465 ttggtcgtccccagctctg 483
| |||||||||| |||||
Sbjct: 26094065 ctcgtcgtccccatctctg 26094047
Score = 44.1 bits (22), Expect = 0.095
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 311 cttcttgcagaagcacttgcgc 332
||||||||||||||||||||||
Sbjct: 26094219 cttcttgcagaagcacttgcgc 26094198
Score = 44.1 bits (22), Expect = 0.095
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 349 tgcactcgccgccggggaagttctcggtctggcacacgttggcgcagttg 398
|||||| ||| |||| |||| ||| ||| ||||||||||||||||||||
Sbjct: 6018815 tgcacttgcctccggagaagccctcagtcaggcacacgttggcgcagttg 6018864
Score = 42.1 bits (21), Expect = 0.38
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 491 gaggaggagcaggaggacgaggacg 515
||||||||| |||||||||||||||
Sbjct: 24952827 gaggaggagaaggaggacgaggacg 24952803
>gb|AU078238.1|AU078238 AU078238 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50130_2Z, mRNA sequence
Length = 461
Score = 73.8 bits (37), Expect = 1e-010
Identities = 70/79 (88%), Gaps = 2/79 (2%)
Strand = Plus / Minus
Query: 380 gcacacgttggcgcagtt-gttgctgctcatgcacaggcccttgaaccggtgg-ctctgc 437
|||||||||||||||||| ||||||||||| | ||| | ||||||||| |||| ||||||
Sbjct: 90 gcacacgttggcgcagtttgttgctgctcaaggacatgnccttgaacctgtgggctctgc 31
Query: 438 gacaggcagtgcctcgcct 456
|||| | ||||||||||||
Sbjct: 30 gacaagnagtgcctcgcct 12
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 301 actagcatatcttcttgcagaagcacttgcgc 332
||||||| | ||||||||||||||||||||||
Sbjct: 172 actagcagaccttcttgcagaagcacttgcgc 141
>gb|C19871.1|C19871 C19871 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11151_2A, mRNA sequence
Length = 333
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 410 gcacaggcccttgaaccggtggctctgcgac 440
|||| ||||||||||||||||||||||||||
Sbjct: 182 gcacgggcccttgaaccggtggctctgcgac 152
>gb|C20129.1|C20129 C20129 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11560_1A, mRNA sequence
Length = 307
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 410 gcacaggcccttgaaccggtggctctgcgac 440
|||| ||||||||||||||||||||||||||
Sbjct: 164 gcacgggcccttgaaccggtggctctgcgac 134
>gb|C20296.1|C20296 C20296 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11809_1A, mRNA sequence
Length = 375
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 410 gcacaggcccttgaaccggtggctctgcgac 440
|||| ||||||||||||||||||||||||||
Sbjct: 151 gcacgggcccttgaaccggtggctctgcgac 121
>gb|C73591.1|C73591 C73591 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11448_2A, mRNA sequence
Length = 289
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 410 gcacaggcccttgaaccggtggctctgcgac 440
|||| ||||||||||||||||||||||||||
Sbjct: 174 gcacgggcccttgaaccggtggctctgcgac 144
>gb|AU078199.1|AU078199 AU078199 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11151_4Z, mRNA sequence
Length = 426
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 410 gcacaggcccttgaaccggtggctctgcgac 440
|||| ||||||||||||||||||||||||||
Sbjct: 168 gcacgggcccttgaaccggtggctctgcgac 138
>gb|AU078201.1|AU078201 AU078201 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11288_5A, mRNA sequence
Length = 394
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 410 gcacaggcccttgaaccggtggctctgcgac 440
|||| ||||||||||||||||||||||||||
Sbjct: 168 gcacgggcccttgaaccggtggctctgcgac 138
>gb|AU078203.1|AU078203 AU078203 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11588_2A, mRNA sequence
Length = 407
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 410 gcacaggcccttgaaccggtggctctgcgac 440
|||| ||||||||||||||||||||||||||
Sbjct: 169 gcacgggcccttgaaccggtggctctgcgac 139
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 963,193
Number of Sequences: 438736
Number of extensions: 963193
Number of successful extensions: 12539
Number of sequences better than 0.5: 123
Number of HSP's better than 0.5 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11590
Number of HSP's gapped (non-prelim): 896
length of query: 665
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 644
effective length of database: 2,791,206,460
effective search space: 1797536960240
effective search space used: 1797536960240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)