BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440503.2.1
(542 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB643268.1|CB643268 OSJNEb03N19.r OSJNEb Oryza sativa (j... 230 6e-058
gb|CB643271.1|CB643271 OSJNEb03N21.r OSJNEb Oryza sativa (j... 230 6e-058
gb|CB671636.1|CB671636 OSJNEe05E21.r OSJNEe Oryza sativa (j... 230 6e-058
dbj|AP004119.3| Oryza sativa (japonica cultivar-group) geno... 230 6e-058
dbj|AP004774.3| Oryza sativa (japonica cultivar-group) geno... 230 6e-058
gb|AACV01005431.1| Oryza sativa (japonica cultivar-group) c... 230 6e-058
ref|XM_467832.1| Oryza sativa (japonica cultivar-group), mRNA 230 6e-058
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 230 6e-058
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 230 6e-058
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 230 6e-058
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 230 6e-058
dbj|AK119887.1| Oryza sativa (japonica cultivar-group) cDNA... 222 2e-055
gb|AU075385.1|AU075385 AU075385 Rice panicle at flowering s... 206 9e-051
gb|C98929.1|C98929 C98929 Rice panicle at flowering stage O... 163 1e-037
gb|CB642595.1|CB642595 OSJNEb02N16.f OSJNEb Oryza sativa (j... 119 2e-024
gb|CB645318.1|CB645318 OSJNEb06O17.f OSJNEb Oryza sativa (j... 119 2e-024
gb|CB649907.1|CB649907 OSJNEb14B16.r OSJNEb Oryza sativa (j... 119 2e-024
gb|CB649953.1|CB649953 OSJNEb14C16.r OSJNEb Oryza sativa (j... 119 2e-024
gb|CB654985.1|CB654985 OSJNEc07P05.f OSJNEc Oryza sativa (j... 119 2e-024
gb|CB655149.1|CB655149 OSJNEc08E11.r OSJNEc Oryza sativa (j... 119 2e-024
gb|CB669907.1|CB669907 OSJNEe02L13.f OSJNEe Oryza sativa (j... 119 2e-024
gb|CB669908.1|CB669908 OSJNEe02L13.r OSJNEe Oryza sativa (j... 119 2e-024
ref|NT_107118.1| Oryza sativa (japonica cultivar-group) 119 2e-024
gb|AACV01022862.1| Oryza sativa (japonica cultivar-group) c... 119 2e-024
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 119 2e-024
gb|AC135596.4| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
gb|AC135601.3| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
gb|AACV01022860.1| Oryza sativa (japonica cultivar-group) c... 90 1e-015
gb|CB655148.1|CB655148 OSJNEc08E11.f OSJNEc Oryza sativa (j... 84 9e-014
gb|CB673206.1|CB673206 OSJNEe07K02.f OSJNEe Oryza sativa (j... 78 6e-012
dbj|AK070171.1| Oryza sativa (japonica cultivar-group) cDNA... 78 6e-012
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 78 6e-012
gb|AACV01022882.1| Oryza sativa (japonica cultivar-group) c... 78 6e-012
gb|AC135599.3| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
gb|CB656276.1|CB656276 OSJNEc10G24.f OSJNEc Oryza sativa (j... 68 5e-009
dbj|AK109882.1| Oryza sativa (japonica cultivar-group) cDNA... 68 5e-009
gb|AACV01022886.1| Oryza sativa (japonica cultivar-group) c... 68 5e-009
gb|AC134922.2| Oryza sativa (japonica cultivar-group) chrom... 66 2e-008
gb|AACV01013503.1| Oryza sativa (japonica cultivar-group) c... 66 2e-008
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 66 2e-008
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 66 2e-008
gb|CB649516.1|CB649516 OSJNEb13H20.f OSJNEb Oryza sativa (j... 56 2e-005
dbj|AK071973.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
ref|XM_474061.1| Oryza sativa (japonica cultivar-group), p... 52 3e-004
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 52 3e-004
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromoso... 52 3e-004
emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromoso... 52 3e-004
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
gb|AACV01025782.1| Oryza sativa (japonica cultivar-group) C... 48 0.005
gb|CH401320.1| Oryza sativa (japonica cultivar-group) scaff... 48 0.005
gb|AC112658.4| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CB637512.1|CB637512 OSJNEa04E13.r OSJNEa Oryza sativa (j... 46 0.019
gb|CB637557.1|CB637557 OSJNEa04G17.f OSJNEa Oryza sativa (j... 46 0.019
gb|CB637558.1|CB637558 OSJNEa04G17.r OSJNEa Oryza sativa (j... 46 0.019
>gb|CB643268.1|CB643268 OSJNEb03N19.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03N19 3', mRNA sequence
Length = 741
Score = 230 bits (116), Expect = 6e-058
Identities = 257/304 (84%)
Strand = Plus / Minus
Query: 213 gagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatg 272
|||||||| ||| |||||||||||||||| | || ||||||||||||| || ||||||
Sbjct: 541 gagacgtgtgacaagctcaagttcccggcgctcgtcagggtgcagaaccatggccccatg 482
Query: 273 gacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggc 332
||||| | |||| | |||||| | ||| |||||||||| |||| ||| | | |||||
Sbjct: 481 gacggcaggcaccccgtgctgctcttcctgcgctggccgaacggcgcggcggacggcggc 422
Query: 333 cggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcg 392
||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |
Sbjct: 421 aggccggcgagccagctgatcggcttccagagcctgcacctcaagtcgatgcagactgtc 362
Query: 393 cacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcagg 452
|| |||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| |
Sbjct: 361 catgtggagttcgaggtgagcccatgcaagcacttcagcagagcgacggaggacggcaag 302
Query: 453 aaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagc 512
|||||||| ||||| || ||||| ||| ||||||| ||||| ||||||||||||||||||
Sbjct: 301 aaggtgattgatcatgggtcgcatttcatgatggttggcgatgatgagttcgagatgagc 242
Query: 513 ttca 516
||||
Sbjct: 241 ttca 238
Score = 63.9 bits (32), Expect = 8e-008
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 27 cccggccggacgtaccggttctaccgcggcccgacagtgttcaacttcggctacggcctc 86
||||| || |||||| |||||||||| ||| || || | ||| |||||||||||||||
Sbjct: 736 cccggacgaacgtacaggttctaccgaggcaacaccgtctacaagttcggctacggcctc 677
Query: 87 agctactccaagtactcccaccgcttcg 114
|||||||| |||||||| |||| |||||
Sbjct: 676 agctactcgaagtactctcaccacttcg 649
>gb|CB643271.1|CB643271 OSJNEb03N21.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03N21 3', mRNA sequence
Length = 858
Score = 230 bits (116), Expect = 6e-058
Identities = 257/304 (84%)
Strand = Plus / Minus
Query: 213 gagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatg 272
|||||||| ||| |||||||||||||||| | || ||||||||||||| || ||||||
Sbjct: 597 gagacgtgtgacaagctcaagttcccggcgctcgtcagggtgcagaaccatggccccatg 538
Query: 273 gacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggc 332
||||| | |||| | |||||| | ||| |||||||||| |||| ||| | | |||||
Sbjct: 537 gacggcaggcaccccgtgctgctcttcctgcgctggccgaacggcgcggcggacggcggc 478
Query: 333 cggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcg 392
||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |
Sbjct: 477 aggccggcgagccagctgatcggcttccagagcctgcacctcaagtcgatgcagactgtc 418
Query: 393 cacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcagg 452
|| |||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| |
Sbjct: 417 catgtggagttcgaggtgagcccatgcaagcacttcagcagagcgacggaggacggcaag 358
Query: 453 aaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagc 512
|||||||| ||||| || ||||| ||| ||||||| ||||| ||||||||||||||||||
Sbjct: 357 aaggtgattgatcatgggtcgcatttcatgatggttggcgatgatgagttcgagatgagc 298
Query: 513 ttca 516
||||
Sbjct: 297 ttca 294
Score = 69.9 bits (35), Expect = 1e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 16 ccacgggctaccccggccggacgtaccggttctaccgcggcccgacagtgttcaacttcg 75
||||||| || ||||| || |||||| |||||||||| ||| || || | ||| ||||
Sbjct: 803 ccacgggatatcccggacgaacgtacaggttctaccgaggcaacaccgtctacaagttcg 744
Query: 76 gctacggcctcagctactccaagtactcccaccgcttcg 114
||||||||||||||||||| |||||||| |||| |||||
Sbjct: 743 gctacggcctcagctactcgaagtactctcaccacttcg 705
>gb|CB671636.1|CB671636 OSJNEe05E21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05E21 3', mRNA sequence
Length = 726
Score = 230 bits (116), Expect = 6e-058
Identities = 257/304 (84%)
Strand = Plus / Minus
Query: 213 gagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatg 272
|||||||| ||| |||||||||||||||| | || ||||||||||||| || ||||||
Sbjct: 524 gagacgtgtgacaagctcaagttcccggcgctcgtcagggtgcagaaccatggccccatg 465
Query: 273 gacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggc 332
||||| | |||| | |||||| | ||| |||||||||| |||| ||| | | |||||
Sbjct: 464 gacggcaggcaccccgtgctgctcttcctgcgctggccgaacggcgcggcggacggcggc 405
Query: 333 cggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcg 392
||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |
Sbjct: 404 aggccggcgagccagctgatcggcttccagagcctgcacctcaagtcgatgcagactgtc 345
Query: 393 cacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcagg 452
|| |||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| |
Sbjct: 344 catgtggagttcgaggtgagcccatgcaagcacttcagcagagcgacggaggacggcaag 285
Query: 453 aaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagc 512
|||||||| ||||| || ||||| ||| ||||||| ||||| ||||||||||||||||||
Sbjct: 284 aaggtgattgatcatgggtcgcatttcatgatggttggcgatgatgagttcgagatgagc 225
Query: 513 ttca 516
||||
Sbjct: 224 ttca 221
Score = 61.9 bits (31), Expect = 3e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 72 ttcggctacggcctcagctactccaagtactcccaccgcttcg 114
||||||||||||||||||||||| |||||||| |||| |||||
Sbjct: 674 ttcggctacggcctcagctactcgaagtactctcaccacttcg 632
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1288_G09
Length = 109672
Score = 230 bits (116), Expect = 6e-058
Identities = 257/304 (84%)
Strand = Plus / Minus
Query: 213 gagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatg 272
|||||||| ||| |||||||||||||||| | || ||||||||||||| || ||||||
Sbjct: 8633 gagacgtgtgacaagctcaagttcccggcgctcgtcagggtgcagaaccatggccccatg 8574
Query: 273 gacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggc 332
||||| | |||| | |||||| | ||| |||||||||| |||| ||| | | |||||
Sbjct: 8573 gacggcaggcaccccgtgctgctcttcctgcgctggccgaacggcgcggcggacggcggc 8514
Query: 333 cggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcg 392
||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |
Sbjct: 8513 aggccggcgagccagctgatcggcttccagagcctgcacctcaagtcgatgcagactgtc 8454
Query: 393 cacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcagg 452
|| |||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| |
Sbjct: 8453 catgtggagttcgaggtgagcccatgcaagcacttcagcagagcgacggaggacggcaag 8394
Query: 453 aaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagc 512
|||||||| ||||| || ||||| ||| ||||||| ||||| ||||||||||||||||||
Sbjct: 8393 aaggtgattgatcatgggtcgcatttcatgatggttggcgatgatgagttcgagatgagc 8334
Query: 513 ttca 516
||||
Sbjct: 8333 ttca 8330
Score = 69.9 bits (35), Expect = 1e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 16 ccacgggctaccccggccggacgtaccggttctaccgcggcccgacagtgttcaacttcg 75
||||||| || ||||| || |||||| |||||||||| ||| || || | ||| ||||
Sbjct: 8839 ccacgggatatcccggacgaacgtacaggttctaccgaggcaacaccgtctacaagttcg 8780
Query: 76 gctacggcctcagctactccaagtactcccaccgcttcg 114
||||||||||||||||||| |||||||| |||| |||||
Sbjct: 8779 gctacggcctcagctactcgaagtactctcaccacttcg 8741
>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0431B06
Length = 154796
Score = 230 bits (116), Expect = 6e-058
Identities = 257/304 (84%)
Strand = Plus / Minus
Query: 213 gagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatg 272
|||||||| ||| |||||||||||||||| | || ||||||||||||| || ||||||
Sbjct: 119406 gagacgtgtgacaagctcaagttcccggcgctcgtcagggtgcagaaccatggccccatg 119347
Query: 273 gacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggc 332
||||| | |||| | |||||| | ||| |||||||||| |||| ||| | | |||||
Sbjct: 119346 gacggcaggcaccccgtgctgctcttcctgcgctggccgaacggcgcggcggacggcggc 119287
Query: 333 cggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcg 392
||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |
Sbjct: 119286 aggccggcgagccagctgatcggcttccagagcctgcacctcaagtcgatgcagactgtc 119227
Query: 393 cacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcagg 452
|| |||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| |
Sbjct: 119226 catgtggagttcgaggtgagcccatgcaagcacttcagcagagcgacggaggacggcaag 119167
Query: 453 aaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagc 512
|||||||| ||||| || ||||| ||| ||||||| ||||| ||||||||||||||||||
Sbjct: 119166 aaggtgattgatcatgggtcgcatttcatgatggttggcgatgatgagttcgagatgagc 119107
Query: 513 ttca 516
||||
Sbjct: 119106 ttca 119103
Score = 69.9 bits (35), Expect = 1e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 16 ccacgggctaccccggccggacgtaccggttctaccgcggcccgacagtgttcaacttcg 75
||||||| || ||||| || |||||| |||||||||| ||| || || | ||| ||||
Sbjct: 119612 ccacgggatatcccggacgaacgtacaggttctaccgaggcaacaccgtctacaagttcg 119553
Query: 76 gctacggcctcagctactccaagtactcccaccgcttcg 114
||||||||||||||||||| |||||||| |||| |||||
Sbjct: 119552 gctacggcctcagctactcgaagtactctcaccacttcg 119514
>gb|AACV01005431.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005431, whole
genome shotgun sequence
Length = 31287
Score = 230 bits (116), Expect = 6e-058
Identities = 257/304 (84%)
Strand = Plus / Minus
Query: 213 gagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatg 272
|||||||| ||| |||||||||||||||| | || ||||||||||||| || ||||||
Sbjct: 9223 gagacgtgtgacaagctcaagttcccggcgctcgtcagggtgcagaaccatggccccatg 9164
Query: 273 gacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggc 332
||||| | |||| | |||||| | ||| |||||||||| |||| ||| | | |||||
Sbjct: 9163 gacggcaggcaccccgtgctgctcttcctgcgctggccgaacggcgcggcggacggcggc 9104
Query: 333 cggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcg 392
||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |
Sbjct: 9103 aggccggcgagccagctgatcggcttccagagcctgcacctcaagtcgatgcagactgtc 9044
Query: 393 cacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcagg 452
|| |||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| |
Sbjct: 9043 catgtggagttcgaggtgagcccatgcaagcacttcagcagagcgacggaggacggcaag 8984
Query: 453 aaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagc 512
|||||||| ||||| || ||||| ||| ||||||| ||||| ||||||||||||||||||
Sbjct: 8983 aaggtgattgatcatgggtcgcatttcatgatggttggcgatgatgagttcgagatgagc 8924
Query: 513 ttca 516
||||
Sbjct: 8923 ttca 8920
Score = 69.9 bits (35), Expect = 1e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 16 ccacgggctaccccggccggacgtaccggttctaccgcggcccgacagtgttcaacttcg 75
||||||| || ||||| || |||||| |||||||||| ||| || || | ||| ||||
Sbjct: 9429 ccacgggatatcccggacgaacgtacaggttctaccgaggcaacaccgtctacaagttcg 9370
Query: 76 gctacggcctcagctactccaagtactcccaccgcttcg 114
||||||||||||||||||| |||||||| |||| |||||
Sbjct: 9369 gctacggcctcagctactcgaagtactctcaccacttcg 9331
>ref|XM_467832.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2628
Score = 230 bits (116), Expect = 6e-058
Identities = 257/304 (84%)
Strand = Plus / Plus
Query: 213 gagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatg 272
|||||||| ||| |||||||||||||||| | || ||||||||||||| || ||||||
Sbjct: 2076 gagacgtgtgacaagctcaagttcccggcgctcgtcagggtgcagaaccatggccccatg 2135
Query: 273 gacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggc 332
||||| | |||| | |||||| | ||| |||||||||| |||| ||| | | |||||
Sbjct: 2136 gacggcaggcaccccgtgctgctcttcctgcgctggccgaacggcgcggcggacggcggc 2195
Query: 333 cggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcg 392
||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |
Sbjct: 2196 aggccggcgagccagctgatcggcttccagagcctgcacctcaagtcgatgcagactgtc 2255
Query: 393 cacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcagg 452
|| |||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| |
Sbjct: 2256 catgtggagttcgaggtgagcccatgcaagcacttcagcagagcgacggaggacggcaag 2315
Query: 453 aaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagc 512
|||||||| ||||| || ||||| ||| ||||||| ||||| ||||||||||||||||||
Sbjct: 2316 aaggtgattgatcatgggtcgcatttcatgatggttggcgatgatgagttcgagatgagc 2375
Query: 513 ttca 516
||||
Sbjct: 2376 ttca 2379
Score = 69.9 bits (35), Expect = 1e-009
Identities = 83/99 (83%)
Strand = Plus / Plus
Query: 16 ccacgggctaccccggccggacgtaccggttctaccgcggcccgacagtgttcaacttcg 75
||||||| || ||||| || |||||| |||||||||| ||| || || | ||| ||||
Sbjct: 1870 ccacgggatatcccggacgaacgtacaggttctaccgaggcaacaccgtctacaagttcg 1929
Query: 76 gctacggcctcagctactccaagtactcccaccgcttcg 114
||||||||||||||||||| |||||||| |||| |||||
Sbjct: 1930 gctacggcctcagctactcgaagtactctcaccacttcg 1968
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 230 bits (116), Expect = 6e-058
Identities = 257/304 (84%)
Strand = Plus / Minus
Query: 213 gagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatg 272
|||||||| ||| |||||||||||||||| | || ||||||||||||| || ||||||
Sbjct: 6793845 gagacgtgtgacaagctcaagttcccggcgctcgtcagggtgcagaaccatggccccatg 6793786
Query: 273 gacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggc 332
||||| | |||| | |||||| | ||| |||||||||| |||| ||| | | |||||
Sbjct: 6793785 gacggcaggcaccccgtgctgctcttcctgcgctggccgaacggcgcggcggacggcggc 6793726
Query: 333 cggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcg 392
||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |
Sbjct: 6793725 aggccggcgagccagctgatcggcttccagagcctgcacctcaagtcgatgcagactgtc 6793666
Query: 393 cacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcagg 452
|| |||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| |
Sbjct: 6793665 catgtggagttcgaggtgagcccatgcaagcacttcagcagagcgacggaggacggcaag 6793606
Query: 453 aaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagc 512
|||||||| ||||| || ||||| ||| ||||||| ||||| ||||||||||||||||||
Sbjct: 6793605 aaggtgattgatcatgggtcgcatttcatgatggttggcgatgatgagttcgagatgagc 6793546
Query: 513 ttca 516
||||
Sbjct: 6793545 ttca 6793542
Score = 69.9 bits (35), Expect = 1e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 16 ccacgggctaccccggccggacgtaccggttctaccgcggcccgacagtgttcaacttcg 75
||||||| || ||||| || |||||| |||||||||| ||| || || | ||| ||||
Sbjct: 6794051 ccacgggatatcccggacgaacgtacaggttctaccgaggcaacaccgtctacaagttcg 6793992
Query: 76 gctacggcctcagctactccaagtactcccaccgcttcg 114
||||||||||||||||||| |||||||| |||| |||||
Sbjct: 6793991 gctacggcctcagctactcgaagtactctcaccacttcg 6793953
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 230 bits (116), Expect = 6e-058
Identities = 257/304 (84%)
Strand = Plus / Minus
Query: 213 gagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatg 272
|||||||| ||| |||||||||||||||| | || ||||||||||||| || ||||||
Sbjct: 18190353 gagacgtgtgacaagctcaagttcccggcgctcgtcagggtgcagaaccatggccccatg 18190294
Query: 273 gacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggc 332
||||| | |||| | |||||| | ||| |||||||||| |||| ||| | | |||||
Sbjct: 18190293 gacggcaggcaccccgtgctgctcttcctgcgctggccgaacggcgcggcggacggcggc 18190234
Query: 333 cggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcg 392
||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |
Sbjct: 18190233 aggccggcgagccagctgatcggcttccagagcctgcacctcaagtcgatgcagactgtc 18190174
Query: 393 cacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcagg 452
|| |||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| |
Sbjct: 18190173 catgtggagttcgaggtgagcccatgcaagcacttcagcagagcgacggaggacggcaag 18190114
Query: 453 aaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagc 512
|||||||| ||||| || ||||| ||| ||||||| ||||| ||||||||||||||||||
Sbjct: 18190113 aaggtgattgatcatgggtcgcatttcatgatggttggcgatgatgagttcgagatgagc 18190054
Query: 513 ttca 516
||||
Sbjct: 18190053 ttca 18190050
Score = 69.9 bits (35), Expect = 1e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 16 ccacgggctaccccggccggacgtaccggttctaccgcggcccgacagtgttcaacttcg 75
||||||| || ||||| || |||||| |||||||||| ||| || || | ||| ||||
Sbjct: 18190559 ccacgggatatcccggacgaacgtacaggttctaccgaggcaacaccgtctacaagttcg 18190500
Query: 76 gctacggcctcagctactccaagtactcccaccgcttcg 114
||||||||||||||||||| |||||||| |||| |||||
Sbjct: 18190499 gctacggcctcagctactcgaagtactctcaccacttcg 18190461
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 230 bits (116), Expect = 6e-058
Identities = 257/304 (84%)
Strand = Plus / Minus
Query: 213 gagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatg 272
|||||||| ||| |||||||||||||||| | || ||||||||||||| || ||||||
Sbjct: 31643417 gagacgtgtgacaagctcaagttcccggcgctcgtcagggtgcagaaccatggccccatg 31643358
Query: 273 gacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggc 332
||||| | |||| | |||||| | ||| |||||||||| |||| ||| | | |||||
Sbjct: 31643357 gacggcaggcaccccgtgctgctcttcctgcgctggccgaacggcgcggcggacggcggc 31643298
Query: 333 cggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcg 392
||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |
Sbjct: 31643297 aggccggcgagccagctgatcggcttccagagcctgcacctcaagtcgatgcagactgtc 31643238
Query: 393 cacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcagg 452
|| |||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| |
Sbjct: 31643237 catgtggagttcgaggtgagcccatgcaagcacttcagcagagcgacggaggacggcaag 31643178
Query: 453 aaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagc 512
|||||||| ||||| || ||||| ||| ||||||| ||||| ||||||||||||||||||
Sbjct: 31643177 aaggtgattgatcatgggtcgcatttcatgatggttggcgatgatgagttcgagatgagc 31643118
Query: 513 ttca 516
||||
Sbjct: 31643117 ttca 31643114
Score = 69.9 bits (35), Expect = 1e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 16 ccacgggctaccccggccggacgtaccggttctaccgcggcccgacagtgttcaacttcg 75
||||||| || ||||| || |||||| |||||||||| ||| || || | ||| ||||
Sbjct: 31643623 ccacgggatatcccggacgaacgtacaggttctaccgaggcaacaccgtctacaagttcg 31643564
Query: 76 gctacggcctcagctactccaagtactcccaccgcttcg 114
||||||||||||||||||| |||||||| |||| |||||
Sbjct: 31643563 gctacggcctcagctactcgaagtactctcaccacttcg 31643525
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 230 bits (116), Expect = 6e-058
Identities = 257/304 (84%)
Strand = Plus / Minus
Query: 213 gagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatg 272
|||||||| ||| |||||||||||||||| | || ||||||||||||| || ||||||
Sbjct: 31628846 gagacgtgtgacaagctcaagttcccggcgctcgtcagggtgcagaaccatggccccatg 31628787
Query: 273 gacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggc 332
||||| | |||| | |||||| | ||| |||||||||| |||| ||| | | |||||
Sbjct: 31628786 gacggcaggcaccccgtgctgctcttcctgcgctggccgaacggcgcggcggacggcggc 31628727
Query: 333 cggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcg 392
||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |
Sbjct: 31628726 aggccggcgagccagctgatcggcttccagagcctgcacctcaagtcgatgcagactgtc 31628667
Query: 393 cacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcagg 452
|| |||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| |
Sbjct: 31628666 catgtggagttcgaggtgagcccatgcaagcacttcagcagagcgacggaggacggcaag 31628607
Query: 453 aaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagc 512
|||||||| ||||| || ||||| ||| ||||||| ||||| ||||||||||||||||||
Sbjct: 31628606 aaggtgattgatcatgggtcgcatttcatgatggttggcgatgatgagttcgagatgagc 31628547
Query: 513 ttca 516
||||
Sbjct: 31628546 ttca 31628543
Score = 69.9 bits (35), Expect = 1e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 16 ccacgggctaccccggccggacgtaccggttctaccgcggcccgacagtgttcaacttcg 75
||||||| || ||||| || |||||| |||||||||| ||| || || | ||| ||||
Sbjct: 31629052 ccacgggatatcccggacgaacgtacaggttctaccgaggcaacaccgtctacaagttcg 31628993
Query: 76 gctacggcctcagctactccaagtactcccaccgcttcg 114
||||||||||||||||||| |||||||| |||| |||||
Sbjct: 31628992 gctacggcctcagctactcgaagtactctcaccacttcg 31628954
>dbj|AK119887.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-H05, full
insert sequence
Length = 2628
Score = 222 bits (112), Expect = 2e-055
Identities = 256/304 (84%)
Strand = Plus / Plus
Query: 213 gagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatg 272
|||||||| ||| |||||||||||||||| | || ||||||||||||| || ||||||
Sbjct: 2076 gagacgtgtgacaagctcaagttcccggcgctcgtcagggtgcagaaccatggccccatg 2135
Query: 273 gacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggc 332
||||| | |||| | |||||| | ||| |||||||||| |||| ||| | | |||||
Sbjct: 2136 gacggcaggcaccccgtgctgctcttcctgcgctggccgaacggcgcggcggacggcggc 2195
Query: 333 cggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcg 392
||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |
Sbjct: 2196 aggccggcgagccagctgatcggcttccagagcctgcacctcaagtcgatgcagactgtc 2255
Query: 393 cacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcagg 452
|| ||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| |
Sbjct: 2256 catatggagttcgaggtgagcccatgcaagcacttcagcagagcgacggaggacggcaag 2315
Query: 453 aaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagc 512
|||||||| ||||| || ||||| ||| ||||||| ||||| ||||||||||||||||||
Sbjct: 2316 aaggtgattgatcatgggtcgcatttcatgatggttggcgatgatgagttcgagatgagc 2375
Query: 513 ttca 516
||||
Sbjct: 2376 ttca 2379
Score = 69.9 bits (35), Expect = 1e-009
Identities = 83/99 (83%)
Strand = Plus / Plus
Query: 16 ccacgggctaccccggccggacgtaccggttctaccgcggcccgacagtgttcaacttcg 75
||||||| || ||||| || |||||| |||||||||| ||| || || | ||| ||||
Sbjct: 1870 ccacgggatatcccggacgaacgtacaggttctaccgaggcaacaccgtctacaagttcg 1929
Query: 76 gctacggcctcagctactccaagtactcccaccgcttcg 114
||||||||||||||||||| |||||||| |||| |||||
Sbjct: 1930 gctacggcctcagctactcgaagtactctcaccacttcg 1968
>gb|AU075385.1|AU075385 AU075385 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2937_4Z, mRNA sequence
Length = 485
Score = 206 bits (104), Expect = 9e-051
Identities = 224/264 (84%)
Strand = Plus / Plus
Query: 253 tgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcgctggccca 312
|||||||||| || ||||||||||| | |||| | |||||| | ||| |||||||||| |
Sbjct: 1 tgcagaaccatggccccatggacggcaggcaccccgtgctgctcttcctgcgctggccga 60
Query: 313 acgcgacggacggcagcggccggccggccagccagctgatcgggttccagagcctgcacc 372
||| ||| | | ||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct: 61 acggcgcggcggacggcggcaggccggcgagccagctgatcggcttccagagcctgcacc 120
Query: 373 tgagggcgacgcagacggcgcacgtggagttcgaggtgagcccctgcaagcacttcagcc 432
| | | ||| |||||| | || |||||||||||||||||||| |||||||||||||||
Sbjct: 121 tcaagtcgatgcagactgtccatgtggagttcgaggtgagcccatgcaagcacttcagca 180
Query: 433 gggcgacggaggatggcaggaaggtgatcgatcagggctcgcacttcgtgatggtcggcg 492
| ||||||||||| |||| ||||||||| ||||| || ||||| ||| ||||||| ||||
Sbjct: 181 gagcgacggaggacggcaagaaggtgattgatcatgggtcgcatttcatgatggttggcg 240
Query: 493 aggatgagttcgagatgagcttca 516
| ||||||||||||||||||||||
Sbjct: 241 atgatgagttcgagatgagcttca 264
>gb|C98929.1|C98929 C98929 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3260_2Z, mRNA sequence
Length = 442
Score = 163 bits (82), Expect = 1e-037
Identities = 145/166 (87%)
Strand = Plus / Plus
Query: 351 atcgggttccagagcctgcacctgagggcgacgcagacggcgcacgtggagttcgaggtg 410
||||| ||||||||||||||||| | | ||| |||||| | || |||||||||||||||
Sbjct: 90 atcggcttccagagcctgcacctcaagtcgatgcagactgtccatgtggagttcgaggtg 149
Query: 411 agcccctgcaagcacttcagccgggcgacggaggatggcaggaaggtgatcgatcagggc 470
||||| ||||||||||||||| | ||||||||||| |||| ||||||||| ||||| ||
Sbjct: 150 agcccatgcaagcacttcagcagagcgacggaggacggcaagaaggtgattgatcatggg 209
Query: 471 tcgcacttcgtgatggtcggcgaggatgagttcgagatgagcttca 516
||||| ||| ||||||| ||||| ||||||||||||||||||||||
Sbjct: 210 tcgcatttcatgatggttggcgatgatgagttcgagatgagcttca 255
>gb|CB642595.1|CB642595 OSJNEb02N16.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb02N16 5', mRNA sequence
Length = 742
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 479 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 420
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 419 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 360
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 359 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 305
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct: 672 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctaccaaggcaacc 613
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgc 110
| || | ||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct: 612 ccgtctacaagttcggctacggcctcagctactccaaattctcccgccgc 563
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 235 agccgggcgagggaggacggcacgaaggtgatcga 201
>gb|CB645318.1|CB645318 OSJNEb06O17.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06O17 5', mRNA sequence
Length = 720
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 577 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 518
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 517 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 458
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 457 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 403
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 72 ttcggctacggcctcagctactccaagtactcccaccgc 110
|||||||||||||||||||||||||| | ||||| ||||
Sbjct: 699 ttcggctacggcctcagctactccaaattctcccgccgc 661
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 333 agccgggcgagggaggacggcacgaaggtgatcga 299
>gb|CB649907.1|CB649907 OSJNEb14B16.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14B16 3', mRNA sequence
Length = 736
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 699 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 640
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 639 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 580
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 579 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 525
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 455 agccgggcgagggaggacggcacgaaggtgatcga 421
>gb|CB649953.1|CB649953 OSJNEb14C16.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14C16 3', mRNA sequence
Length = 739
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 698 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 639
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 638 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 579
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 578 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 524
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 454 agccgggcgagggaggacggcacgaaggtgatcga 420
>gb|CB654985.1|CB654985 OSJNEc07P05.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07P05 5', mRNA sequence
Length = 757
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 566 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 625
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 626 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 685
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 686 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 740
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct: 373 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctaccaaggcaacc 432
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgc 110
| || | ||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct: 433 ccgtctacaagttcggctacggcctcagctactccaaattctcccgccgc 482
>gb|CB655149.1|CB655149 OSJNEc08E11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08E11 3', mRNA sequence
Length = 765
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 623 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 564
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 563 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 504
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 503 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 449
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 72 ttcggctacggcctcagctactccaagtactcccaccgc 110
|||||||||||||||||||||||||| | ||||| ||||
Sbjct: 745 ttcggctacggcctcagctactccaaattctcccgccgc 707
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 379 agccgggcgagggaggacggcacgaaggtgatcga 345
>gb|CB669907.1|CB669907 OSJNEe02L13.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02L13 5', mRNA sequence
Length = 788
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 600 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 659
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 660 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 719
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 720 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 774
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct: 407 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctaccaaggcaacc 466
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgc 110
| || | ||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct: 467 ccgtctacaagttcggctacggcctcagctactccaaattctcccgccgc 516
>gb|CB669908.1|CB669908 OSJNEe02L13.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02L13 3', mRNA sequence
Length = 792
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 529 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 470
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 469 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 410
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 409 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 355
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct: 722 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctaccaaggcaacc 663
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgc 110
| || | ||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct: 662 ccgtctacaagttcggctacggcctcagctactccaaattctcccgccgc 613
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 285 agccgggcgagggaggacggcacgaaggtgatcga 251
>ref|NT_107118.1| Oryza sativa (japonica cultivar-group)
Length = 339677
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 133347 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 133288
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 133287 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 133228
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 133227 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 133173
Score = 89.7 bits (45), Expect = 1e-015
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||| |
Sbjct: 99003 tgcgcgccgacccggccaccggctatcccggccggagctaccgcttctaccagggcaaca 98944
Query: 61 cagtgttcaacttcggctacggcctcagctactccaa 97
| || | ||||||||||||||||||||||||||||||
Sbjct: 98943 ccgtctacaacttcggctacggcctcagctactccaa 98907
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct: 133540 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctaccaaggcaacc 133481
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgc 110
| || | ||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct: 133480 ccgtctacaagttcggctacggcctcagctactccaaattctcccgccgc 133431
Score = 77.8 bits (39), Expect = 6e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 234 ttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgct 292
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 98749 ttcccggcggtggtcgaggtgcagaaccacggccccatggacggcaagcactcggtgct 98691
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagccagctgatcgggttccagagcc 366
||||||||||||| || |||||||||||||||| |||||
Sbjct: 98661 gcggccggccggcgaggcagctgatcgggttccggagcc 98623
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 133103 agccgggcgagggaggacggcacgaaggtgatcga 133069
>gb|AACV01022862.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022862, whole
genome shotgun sequence
Length = 5995
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 2106 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 2047
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 2046 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 1987
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 1986 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 1932
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct: 2299 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctaccaaggcaacc 2240
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgc 110
| || | ||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct: 2239 ccgtctacaagttcggctacggcctcagctactccaaattctcccgccgc 2190
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 1862 agccgggcgagggaggacggcacgaaggtgatcga 1828
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 1643904 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 1643845
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 1643844 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 1643785
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 1643784 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 1643730
Score = 89.7 bits (45), Expect = 1e-015
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||| |
Sbjct: 1606058 tgcgcgccgacccggccaccggctatcccggccggagctaccgcttctaccagggcaaca 1605999
Query: 61 cagtgttcaacttcggctacggcctcagctactccaa 97
| || | ||||||||||||||||||||||||||||||
Sbjct: 1605998 ccgtctacaacttcggctacggcctcagctactccaa 1605962
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct: 1644097 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctaccaaggcaacc 1644038
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgc 110
| || | ||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct: 1644037 ccgtctacaagttcggctacggcctcagctactccaaattctcccgccgc 1643988
Score = 77.8 bits (39), Expect = 6e-012
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||| ||||||||||||| |||||||||||||||| ||||| |||||| ||| ||
Sbjct: 1984642 tgcgccccgacccggccaccggctaccccggccggagctaccgattctacaagggcaaga 1984701
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagt 99
| || | ||| ||||| ||||||||||||||||||||||
Sbjct: 1984702 ccgtctacaagttcgggtacggcctcagctactccaagt 1984740
Score = 77.8 bits (39), Expect = 6e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 234 ttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgct 292
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 1605804 ttcccggcggtggtcgaggtgcagaaccacggccccatggacggcaagcactcggtgct 1605746
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 227 gctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactc 286
|||||||||||||||||| ||| |||||||||||| || |||||||| || ||||||||
Sbjct: 2026512 gctcaagttcccggcggttgtggaggtgcagaaccatggccccatggatggcaagcactc 2026571
Query: 287 ggtgct 292
|||||
Sbjct: 2026572 tgtgct 2026577
Score = 56.0 bits (28), Expect = 2e-005
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||| |||||||| ||||| |||||||| ||||||| || || ||||||| ||| ||
Sbjct: 2026277 tgcgtgccgacccagccaccggctaccctggccggagctatcgcttctaccagggcaaga 2026336
Query: 61 cagtgttcaacttcggctacggcctcagctactcca 96
| || | ||| ||||||||||| |||||||||||||
Sbjct: 2026337 ccgtctacaagttcggctacggtctcagctactcca 2026372
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagccagctgatcgggttccagagcc 366
||||||||||||| || |||||||||||||||| |||||
Sbjct: 1605716 gcggccggccggcgaggcagctgatcgggttccggagcc 1605678
Score = 52.0 bits (26), Expect = 3e-004
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 218 gtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgg 277
|||||| ||||||| |||||||| ||||| |||||||||||| || |||||||| ||
Sbjct: 1984871 gtgcgagcggctcaggttcccggtcatggtggaggtgcagaaccatggccccatggatgg 1984930
Query: 278 gaagcactcggtgctggtgttc 299
|||||| | |||||| |||||
Sbjct: 1984931 caagcacaccgtgctgatgttc 1984952
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 1643660 agccgggcgagggaggacggcacgaaggtgatcga 1643626
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 9498948 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 9498889
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 9498888 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 9498829
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 9498828 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 9498774
Score = 89.7 bits (45), Expect = 1e-015
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||| |
Sbjct: 9461102 tgcgcgccgacccggccaccggctatcccggccggagctaccgcttctaccagggcaaca 9461043
Query: 61 cagtgttcaacttcggctacggcctcagctactccaa 97
| || | ||||||||||||||||||||||||||||||
Sbjct: 9461042 ccgtctacaacttcggctacggcctcagctactccaa 9461006
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct: 9499141 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctaccaaggcaacc 9499082
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgc 110
| || | ||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct: 9499081 ccgtctacaagttcggctacggcctcagctactccaaattctcccgccgc 9499032
Score = 77.8 bits (39), Expect = 6e-012
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||| ||||||||||||| |||||||||||||||| ||||| |||||| ||| ||
Sbjct: 9839686 tgcgccccgacccggccaccggctaccccggccggagctaccgattctacaagggcaaga 9839745
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagt 99
| || | ||| ||||| ||||||||||||||||||||||
Sbjct: 9839746 ccgtctacaagttcgggtacggcctcagctactccaagt 9839784
Score = 77.8 bits (39), Expect = 6e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 234 ttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgct 292
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 9460848 ttcccggcggtggtcgaggtgcagaaccacggccccatggacggcaagcactcggtgct 9460790
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 227 gctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactc 286
|||||||||||||||||| ||| |||||||||||| || |||||||| || ||||||||
Sbjct: 9881556 gctcaagttcccggcggttgtggaggtgcagaaccatggccccatggatggcaagcactc 9881615
Query: 287 ggtgct 292
|||||
Sbjct: 9881616 tgtgct 9881621
Score = 56.0 bits (28), Expect = 2e-005
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||| |||||||| ||||| |||||||| ||||||| || || ||||||| ||| ||
Sbjct: 9881321 tgcgtgccgacccagccaccggctaccctggccggagctatcgcttctaccagggcaaga 9881380
Query: 61 cagtgttcaacttcggctacggcctcagctactcca 96
| || | ||| ||||||||||| |||||||||||||
Sbjct: 9881381 ccgtctacaagttcggctacggtctcagctactcca 9881416
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagccagctgatcgggttccagagcc 366
||||||||||||| || |||||||||||||||| |||||
Sbjct: 9460760 gcggccggccggcgaggcagctgatcgggttccggagcc 9460722
Score = 52.0 bits (26), Expect = 3e-004
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 218 gtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgg 277
|||||| ||||||| |||||||| ||||| |||||||||||| || |||||||| ||
Sbjct: 9839915 gtgcgagcggctcaggttcccggtcatggtggaggtgcagaaccatggccccatggatgg 9839974
Query: 278 gaagcactcggtgctggtgttc 299
|||||| | |||||| |||||
Sbjct: 9839975 caagcacaccgtgctgatgttc 9839996
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 9498704 agccgggcgagggaggacggcacgaaggtgatcga 9498670
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 10509501 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 10509442
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 10509441 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 10509382
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 10509381 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 10509327
Score = 89.7 bits (45), Expect = 1e-015
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||| |
Sbjct: 10475157 tgcgcgccgacccggccaccggctatcccggccggagctaccgcttctaccagggcaaca 10475098
Query: 61 cagtgttcaacttcggctacggcctcagctactccaa 97
| || | ||||||||||||||||||||||||||||||
Sbjct: 10475097 ccgtctacaacttcggctacggcctcagctactccaa 10475061
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct: 10509694 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctaccaaggcaacc 10509635
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgc 110
| || | ||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct: 10509634 ccgtctacaagttcggctacggcctcagctactccaaattctcccgccgc 10509585
Score = 77.8 bits (39), Expect = 6e-012
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||| ||||||||||||| |||||||||||||||| ||||| |||||| ||| ||
Sbjct: 10837604 tgcgccccgacccggccaccggctaccccggccggagctaccgattctacaagggcaaga 10837663
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagt 99
| || | ||| ||||| ||||||||||||||||||||||
Sbjct: 10837664 ccgtctacaagttcgggtacggcctcagctactccaagt 10837702
Score = 77.8 bits (39), Expect = 6e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 234 ttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgct 292
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 10474903 ttcccggcggtggtcgaggtgcagaaccacggccccatggacggcaagcactcggtgct 10474845
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 227 gctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactc 286
|||||||||||||||||| ||| |||||||||||| || |||||||| || ||||||||
Sbjct: 10876844 gctcaagttcccggcggttgtggaggtgcagaaccatggccccatggatggcaagcactc 10876903
Query: 287 ggtgct 292
|||||
Sbjct: 10876904 tgtgct 10876909
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||| | ||||||| |||||||||||||||||| ||||| |||||| ||||||||
Sbjct: 26340735 tgcgcgccaatccggccaagggctaccccggccggacctaccgcttctacaccggcccga 26340676
Query: 61 c 61
|
Sbjct: 26340675 c 26340675
Score = 56.0 bits (28), Expect = 2e-005
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||| |||||||| ||||| |||||||| ||||||| || || ||||||| ||| ||
Sbjct: 10876609 tgcgtgccgacccagccaccggctaccctggccggagctatcgcttctaccagggcaaga 10876668
Query: 61 cagtgttcaacttcggctacggcctcagctactcca 96
| || | ||| ||||||||||| |||||||||||||
Sbjct: 10876669 ccgtctacaagttcggctacggtctcagctactcca 10876704
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagccagctgatcgggttccagagcc 366
||||||||||||| || |||||||||||||||| |||||
Sbjct: 10474815 gcggccggccggcgaggcagctgatcgggttccggagcc 10474777
Score = 52.0 bits (26), Expect = 3e-004
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 218 gtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgg 277
|||||| ||||||| |||||||| ||||| |||||||||||| || |||||||| ||
Sbjct: 10837833 gtgcgagcggctcaggttcccggtcatggtggaggtgcagaaccatggccccatggatgg 10837892
Query: 278 gaagcactcggtgctggtgttc 299
|||||| | |||||| |||||
Sbjct: 10837893 caagcacaccgtgctgatgttc 10837914
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 ttcggctacggcctcagctactccaagt 99
||||||||||||||||||||| ||||||
Sbjct: 27862217 ttcggctacggcctcagctacaccaagt 27862244
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 10509257 agccgggcgagggaggacggcacgaaggtgatcga 10509223
>gb|AC135596.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032D10
map E20933S, complete sequence
Length = 146118
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 133347 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 133288
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 133287 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 133228
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 133227 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 133173
Score = 89.7 bits (45), Expect = 1e-015
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||| |
Sbjct: 99003 tgcgcgccgacccggccaccggctatcccggccggagctaccgcttctaccagggcaaca 98944
Query: 61 cagtgttcaacttcggctacggcctcagctactccaa 97
| || | ||||||||||||||||||||||||||||||
Sbjct: 98943 ccgtctacaacttcggctacggcctcagctactccaa 98907
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct: 133540 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctaccaaggcaacc 133481
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgc 110
| || | ||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct: 133480 ccgtctacaagttcggctacggcctcagctactccaaattctcccgccgc 133431
Score = 77.8 bits (39), Expect = 6e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 234 ttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgct 292
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 98749 ttcccggcggtggtcgaggtgcagaaccacggccccatggacggcaagcactcggtgct 98691
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagccagctgatcgggttccagagcc 366
||||||||||||| || |||||||||||||||| |||||
Sbjct: 98661 gcggccggccggcgaggcagctgatcgggttccggagcc 98623
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 133103 agccgggcgagggaggacggcacgaaggtgatcga 133069
>gb|AC135601.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0051D22, complete sequence
Length = 119919
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 91425 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 91484
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 91485 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 91544
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 91545 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 91599
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct: 91232 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctaccaaggcaacc 91291
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgc 110
| || | ||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct: 91292 ccgtctacaagttcggctacggcctcagctactccaaattctcccgccgc 91341
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 91669 agccgggcgagggaggacggcacgaaggtgatcga 91703
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 119 bits (60), Expect = 2e-024
Identities = 149/176 (84%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||
Sbjct: 10581045 gagctaccacgtggaggagatcggcgaggaggggtgcgagcggctcaagttcccggccac 10580986
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 10580985 cgtggaggtgcacaaccacgggcccatggacggcaagcactcggtgctggtgttcgtccg 10580926
Query: 305 ctggcccaacgcgacggacggcagcg-gccggccggccagccagctgatcgggttc 359
||||| |||||||||| ||| ||| |||||||||| || |||||| ||||||||
Sbjct: 10580925 gtggccgaacgcgacgg-cgggggcgagccggccggcgaggcagctggtcgggttc 10580871
Score = 89.7 bits (45), Expect = 1e-015
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||| |
Sbjct: 10546701 tgcgcgccgacccggccaccggctatcccggccggagctaccgcttctaccagggcaaca 10546642
Query: 61 cagtgttcaacttcggctacggcctcagctactccaa 97
| || | ||||||||||||||||||||||||||||||
Sbjct: 10546641 ccgtctacaacttcggctacggcctcagctactccaa 10546605
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct: 10581238 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctaccaaggcaacc 10581179
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgc 110
| || | ||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct: 10581178 ccgtctacaagttcggctacggcctcagctactccaaattctcccgccgc 10581129
Score = 77.8 bits (39), Expect = 6e-012
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||| ||||||||||||| |||||||||||||||| ||||| |||||| ||| ||
Sbjct: 10916793 tgcgccccgacccggccaccggctaccccggccggagctaccgattctacaagggcaaga 10916852
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagt 99
| || | ||| ||||| ||||||||||||||||||||||
Sbjct: 10916853 ccgtctacaagttcgggtacggcctcagctactccaagt 10916891
Score = 77.8 bits (39), Expect = 6e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 234 ttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgct 292
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 10546447 ttcccggcggtggtcgaggtgcagaaccacggccccatggacggcaagcactcggtgct 10546389
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 227 gctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactc 286
|||||||||||||||||| ||| |||||||||||| || |||||||| || ||||||||
Sbjct: 10956033 gctcaagttcccggcggttgtggaggtgcagaaccatggccccatggatggcaagcactc 10956092
Query: 287 ggtgct 292
|||||
Sbjct: 10956093 tgtgct 10956098
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||| | ||||||| |||||||||||||||||| ||||| |||||| ||||||||
Sbjct: 26654993 tgcgcgccaatccggccaagggctaccccggccggacctaccgcttctacaccggcccga 26654934
Query: 61 c 61
|
Sbjct: 26654933 c 26654933
Score = 56.0 bits (28), Expect = 2e-005
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||| |||||||| ||||| |||||||| ||||||| || || ||||||| ||| ||
Sbjct: 10955798 tgcgtgccgacccagccaccggctaccctggccggagctatcgcttctaccagggcaaga 10955857
Query: 61 cagtgttcaacttcggctacggcctcagctactcca 96
| || | ||| ||||||||||| |||||||||||||
Sbjct: 10955858 ccgtctacaagttcggctacggtctcagctactcca 10955893
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagccagctgatcgggttccagagcc 366
||||||||||||| || |||||||||||||||| |||||
Sbjct: 10546359 gcggccggccggcgaggcagctgatcgggttccggagcc 10546321
Score = 52.0 bits (26), Expect = 3e-004
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 218 gtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgg 277
|||||| ||||||| |||||||| ||||| |||||||||||| || |||||||| ||
Sbjct: 10917022 gtgcgagcggctcaggttcccggtcatggtggaggtgcagaaccatggccccatggatgg 10917081
Query: 278 gaagcactcggtgctggtgttc 299
|||||| | |||||| |||||
Sbjct: 10917082 caagcacaccgtgctgatgttc 10917103
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 ttcggctacggcctcagctactccaagt 99
||||||||||||||||||||| ||||||
Sbjct: 27886205 ttcggctacggcctcagctacaccaagt 27886232
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 429 agccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||| |||||| |||| ||||||||||||
Sbjct: 10580801 agccgggcgagggaggacggcacgaaggtgatcga 10580767
>gb|AACV01022860.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022860, whole
genome shotgun sequence
Length = 86978
Score = 89.7 bits (45), Expect = 1e-015
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||| |
Sbjct: 54259 tgcgcgccgacccggccaccggctatcccggccggagctaccgcttctaccagggcaaca 54200
Query: 61 cagtgttcaacttcggctacggcctcagctactccaa 97
| || | ||||||||||||||||||||||||||||||
Sbjct: 54199 ccgtctacaacttcggctacggcctcagctactccaa 54163
Score = 77.8 bits (39), Expect = 6e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 234 ttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgct 292
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 54005 ttcccggcggtggtcgaggtgcagaaccacggccccatggacggcaagcactcggtgct 53947
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagccagctgatcgggttccagagcc 366
||||||||||||| || |||||||||||||||| |||||
Sbjct: 53917 gcggccggccggcgaggcagctgatcgggttccggagcc 53879
>gb|CB655148.1|CB655148 OSJNEc08E11.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08E11 5', mRNA sequence
Length = 743
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct: 536 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctaccaaggcaacc 595
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgc 110
| || | ||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct: 596 ccgtctacaagttcggctacggcctcagctactccaaattctcccgccgc 645
>gb|CB673206.1|CB673206 OSJNEe07K02.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe07K02 5', mRNA sequence
Length = 455
Score = 77.8 bits (39), Expect = 6e-012
Identities = 96/115 (83%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||| ||| |||||| |||| |||||| ||||||||||||||| |
Sbjct: 447 gagctaccacgtgtaggagatcggcgaggaggggtgcgagcggctcaagttcccgtcccc 388
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttc 299
||| |||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct: 387 cgtggaggtgcacagccacgggcccatggacggcaagcactcggtgctggtgttc 333
>dbj|AK070171.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041O20, full
insert sequence
Length = 2515
Score = 77.8 bits (39), Expect = 6e-012
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||| ||||||||||||| |||||||||||||||| ||||| |||||| ||| ||
Sbjct: 1857 tgcgccccgacccggccaccggctaccccggccggagctaccgattctacaagggcaaga 1916
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagt 99
| || | ||| ||||| ||||||||||||||||||||||
Sbjct: 1917 ccgtctacaagttcgggtacggcctcagctactccaagt 1955
Score = 44.1 bits (22), Expect = 0.077
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 218 gtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgg 277
|||||| |||||| |||||||| ||||| |||||||||||| || |||||||| ||
Sbjct: 2086 gtgcgagcggctcgggttcccggtcatggtggaggtgcagaaccatggccccatggatgg 2145
Query: 278 gaagcactcggtgctggtgttc 299
|||||| | |||||| |||||
Sbjct: 2146 caagcacaccgtgctgatgttc 2167
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 77.8 bits (39), Expect = 6e-012
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||| ||||||||||||| |||||||||||||||| ||||| |||||| ||| ||
Sbjct: 27124 tgcgccccgacccggccaccggctaccccggccggagctaccgattctacaagggcaaga 27183
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagt 99
| || | ||| ||||| ||||||||||||||||||||||
Sbjct: 27184 ccgtctacaagttcgggtacggcctcagctactccaagt 27222
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 227 gctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactc 286
|||||||||||||||||| ||| |||||||||||| || |||||||| || ||||||||
Sbjct: 66364 gctcaagttcccggcggttgtggaggtgcagaaccatggccccatggatggcaagcactc 66423
Query: 287 ggtgct 292
|||||
Sbjct: 66424 tgtgct 66429
Score = 56.0 bits (28), Expect = 2e-005
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||| |||||||| ||||| |||||||| ||||||| || || ||||||| ||| ||
Sbjct: 66129 tgcgtgccgacccagccaccggctaccctggccggagctatcgcttctaccagggcaaga 66188
Query: 61 cagtgttcaacttcggctacggcctcagctactcca 96
| || | ||| ||||||||||| |||||||||||||
Sbjct: 66189 ccgtctacaagttcggctacggtctcagctactcca 66224
Score = 52.0 bits (26), Expect = 3e-004
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 218 gtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgg 277
|||||| ||||||| |||||||| ||||| |||||||||||| || |||||||| ||
Sbjct: 27353 gtgcgagcggctcaggttcccggtcatggtggaggtgcagaaccatggccccatggatgg 27412
Query: 278 gaagcactcggtgctggtgttc 299
|||||| | |||||| |||||
Sbjct: 27413 caagcacaccgtgctgatgttc 27434
>gb|AACV01022882.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022882, whole
genome shotgun sequence
Length = 28515
Score = 77.8 bits (39), Expect = 6e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||| ||||||||||||| |||||||||||||||| ||||| |||||| ||| ||
Sbjct: 22472 tgcgccccgacccggccaccggctaccccggccggagctaccgattctacaagggcaaga 22413
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagt 99
| || | ||| ||||| ||||||||||||||||||||||
Sbjct: 22412 ccgtctacaagttcgggtacggcctcagctactccaagt 22374
Score = 52.0 bits (26), Expect = 3e-004
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 218 gtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgg 277
|||||| ||||||| |||||||| ||||| |||||||||||| || |||||||| ||
Sbjct: 22243 gtgcgagcggctcaggttcccggtcatggtggaggtgcagaaccatggccccatggatgg 22184
Query: 278 gaagcactcggtgctggtgttc 299
|||||| | |||||| |||||
Sbjct: 22183 caagcacaccgtgctgatgttc 22162
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0045P14, complete sequence
Length = 121894
Score = 77.8 bits (39), Expect = 6e-012
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||| ||||||||||||| |||||||||||||||| ||||| |||||| ||| ||
Sbjct: 27124 tgcgccccgacccggccaccggctaccccggccggagctaccgattctacaagggcaaga 27183
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagt 99
| || | ||| ||||| ||||||||||||||||||||||
Sbjct: 27184 ccgtctacaagttcgggtacggcctcagctactccaagt 27222
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 227 gctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactc 286
|||||||||||||||||| ||| |||||||||||| || |||||||| || ||||||||
Sbjct: 66364 gctcaagttcccggcggttgtggaggtgcagaaccatggccccatggatggcaagcactc 66423
Query: 287 ggtgct 292
|||||
Sbjct: 66424 tgtgct 66429
Score = 56.0 bits (28), Expect = 2e-005
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||| |||||||| ||||| |||||||| ||||||| || || ||||||| ||| ||
Sbjct: 66129 tgcgtgccgacccagccaccggctaccctggccggagctatcgcttctaccagggcaaga 66188
Query: 61 cagtgttcaacttcggctacggcctcagctactcca 96
| || | ||| ||||||||||| |||||||||||||
Sbjct: 66189 ccgtctacaagttcggctacggtctcagctactcca 66224
Score = 52.0 bits (26), Expect = 3e-004
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 218 gtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgg 277
|||||| ||||||| |||||||| ||||| |||||||||||| || |||||||| ||
Sbjct: 27353 gtgcgagcggctcaggttcccggtcatggtggaggtgcagaaccatggccccatggatgg 27412
Query: 278 gaagcactcggtgctggtgttc 299
|||||| | |||||| |||||
Sbjct: 27413 caagcacaccgtgctgatgttc 27434
>gb|CB656276.1|CB656276 OSJNEc10G24.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10G24 5', mRNA sequence
Length = 788
Score = 67.9 bits (34), Expect = 5e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctac 50
||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct: 739 tgcgcgccgacccggccaccggctaccccggccggagctaccgcttctac 788
>dbj|AK109882.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-D05, full
insert sequence
Length = 2714
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 227 gctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactc 286
|||||||||||||||||| ||| |||||||||||| || |||||||| || ||||||||
Sbjct: 2112 gctcaagttcccggcggttgtggaggtgcagaaccatggccccatggatggcaagcactc 2171
Query: 287 ggtgct 292
|||||
Sbjct: 2172 tgtgct 2177
Score = 56.0 bits (28), Expect = 2e-005
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||| |||||||| ||||| |||||||| ||||||| || || ||||||| ||| ||
Sbjct: 1877 tgcgtgccgacccagccaccggctaccctggccggagctatcgcttctaccagggcaaga 1936
Query: 61 cagtgttcaacttcggctacggcctcagctactcca 96
| || | ||| ||||||||||| |||||||||||||
Sbjct: 1937 ccgtctacaagttcggctacggtctcagctactcca 1972
>gb|AACV01022886.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022886, whole
genome shotgun sequence
Length = 32627
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 227 gctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactc 286
|||||||||||||||||| ||| |||||||||||| || |||||||| || ||||||||
Sbjct: 17368 gctcaagttcccggcggttgtggaggtgcagaaccatggccccatggatggcaagcactc 17309
Query: 287 ggtgct 292
|||||
Sbjct: 17308 tgtgct 17303
Score = 56.0 bits (28), Expect = 2e-005
Identities = 79/96 (82%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||| |||||||| ||||| |||||||| ||||||| || || ||||||| ||| ||
Sbjct: 17603 tgcgtgccgacccagccaccggctaccctggccggagctatcgcttctaccagggcaaga 17544
Query: 61 cagtgttcaacttcggctacggcctcagctactcca 96
| || | ||| ||||||||||| |||||||||||||
Sbjct: 17543 ccgtctacaagttcggctacggtctcagctactcca 17508
>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBa0004D06, complete sequence
Length = 157547
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||| | ||||||| |||||||||||||||||| ||||| |||||| ||||||||
Sbjct: 42567 tgcgcgccaatccggccaagggctaccccggccggacctaccgcttctacaccggcccga 42508
Query: 61 c 61
|
Sbjct: 42507 c 42507
>gb|AACV01013503.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013503, whole
genome shotgun sequence
Length = 11106
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||| | ||||||| |||||||||||||||||| ||||| |||||| ||||||||
Sbjct: 9982 tgcgcgccaatccggccaagggctaccccggccggacctaccgcttctacaccggcccga 9923
Query: 61 c 61
|
Sbjct: 9922 c 9922
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047
genomic scaffold, whole genome shotgun sequence
Length = 2656042
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||| | ||||||| |||||||||||||||||| ||||| |||||| ||||||||
Sbjct: 192956 tgcgcgccaatccggccaagggctaccccggccggacctaccgcttctacaccggcccga 193015
Query: 61 c 61
|
Sbjct: 193016 c 193016
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||| | ||||||| |||||||||||||||||| ||||| |||||| ||||||||
Sbjct: 8800608 tgcgcgccaatccggccaagggctaccccggccggacctaccgcttctacaccggcccga 8800667
Query: 61 c 61
|
Sbjct: 8800668 c 8800668
>gb|CB649516.1|CB649516 OSJNEb13H20.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13H20 5', mRNA sequence
Length = 860
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccgga 36
||||||||||||||||||| ||||||||||| ||||
Sbjct: 766 tgcgcgccgacccggccaccggctaccccgggcgga 801
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 ttcggctacggcctcagctactcca 96
|||||||||||||||||||||||||
Sbjct: 836 ttcggctacggcctcagctactcca 860
>dbj|AK071973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J07, full
insert sequence
Length = 1746
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 21 ggctaccccggccggacgtaccggttctac 50
||||||||||||||||| ||||||||||||
Sbjct: 946 ggctaccccggccggacataccggttctac 975
>dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065A06, full
insert sequence
Length = 2821
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 21 ggctaccccggccggacgtaccggttctac 50
||||||||||||||||| ||||||||||||
Sbjct: 1985 ggctaccccggccggacataccggttctac 2014
>gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010557, whole
genome shotgun sequence
Length = 69660
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 21 ggctaccccggccggacgtaccggttctac 50
||||||||||||||||| ||||||||||||
Sbjct: 16773 ggctaccccggccggacataccggttctac 16744
>ref|XM_474061.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2298
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 21 ggctaccccggccggacgtaccggttctac 50
||||||||||||||||| ||||||||||||
Sbjct: 1816 ggctaccccggccggacataccggttctac 1845
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 21 ggctaccccggccggacgtaccggttctac 50
||||||||||||||||| ||||||||||||
Sbjct: 18881 ggctaccccggccggacataccggttctac 18852
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 778,805
Number of Sequences: 438736
Number of extensions: 778805
Number of successful extensions: 24951
Number of sequences better than 0.5: 61
Number of HSP's better than 0.5 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24104
Number of HSP's gapped (non-prelim): 822
length of query: 542
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 521
effective length of database: 2,791,206,460
effective search space: 1454218565660
effective search space used: 1454218565660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)