BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437687.2.1
(1171 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK062225.1| Oryza sativa (japonica cultivar-group) cDNA... 660 0.0
ref|XM_473658.1| Oryza sativa (japonica cultivar-group), p... 660 0.0
dbj|AK066414.1| Oryza sativa (japonica cultivar-group) cDNA... 579 e-162
gb|AACV01010380.1| Oryza sativa (japonica cultivar-group) c... 486 e-134
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 486 e-134
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 486 e-134
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 486 e-134
emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromoso... 486 e-134
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 486 e-134
gb|AU069455.1|AU069455 AU069455 Rice callus Oryza sativa (j... 408 e-111
gb|AU069463.1|AU069463 AU069463 Rice callus Oryza sativa (j... 333 1e-088
gb|AU069357.1|AU069357 AU069357 Rice callus Oryza sativa (j... 270 2e-069
gb|CB000860.1|CB000860 S345K_B12 Rice cold stress germinati... 147 2e-032
dbj|AK111100.1| Oryza sativa (japonica cultivar-group) cDNA... 62 7e-007
gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic seque... 62 7e-007
gb|AACV01000580.1| Oryza sativa (japonica cultivar-group) c... 62 7e-007
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 62 7e-007
ref|NM_188790.1| Oryza sativa (japonica cultivar-group), p... 62 7e-007
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 62 7e-007
dbj|AP002865.1| Oryza sativa (japonica cultivar-group) geno... 62 7e-007
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 62 7e-007
dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
dbj|AP004587.3| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
dbj|AP005544.3| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AC144737.2| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|AACV01012416.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
ref|XM_475418.1| Oryza sativa (japonica cultivar-group), p... 58 1e-005
ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA 58 1e-005
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 58 1e-005
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 58 1e-005
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chro... 56 4e-005
dbj|AK101940.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 56 4e-005
dbj|AP003539.3| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
gb|AACV01014579.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
gb|CA756483.1|CA756483 BR030043000_PLATE_E06_45_049.ab1 OA ... 54 2e-004
dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK070133.1| Oryza sativa (japonica cultivar-group) cDNA... 52 7e-004
gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 gen... 52 7e-004
dbj|AP003769.3| Oryza sativa (japonica cultivar-group) geno... 52 7e-004
gb|AACV01014938.1| Oryza sativa (japonica cultivar-group) c... 52 7e-004
gb|DQ061068.1| Oryza sativa (japonica cultivar-group) alpha... 52 7e-004
gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (j... 50 0.003
dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.003
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 50 0.003
ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-... 50 0.003
dbj|AP004114.3| Oryza sativa (japonica cultivar-group) geno... 50 0.003
dbj|AP005297.3| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|BE039217.1|BE039217 OA01E03 OA Oryza sativa (japonica cu... 46 0.043
dbj|AK107698.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.043
gb|AC087550.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
gb|AACV01021633.1| Oryza sativa (japonica cultivar-group) c... 46 0.043
ref|NM_196686.1| Oryza sativa (japonica cultivar-group) put... 46 0.043
ref|NM_196687.1| Oryza sativa (japonica cultivar-group) put... 46 0.043
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 46 0.043
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 46 0.043
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
gb|DQ061067.1| Oryza sativa (japonica cultivar-group) alpha... 46 0.043
gb|AC125496.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.043
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 46 0.043
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
gb|AC105730.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|AC134233.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|AACV01005896.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 44 0.17
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
>dbj|AK062225.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C11, full
insert sequence
Length = 1162
Score = 660 bits (333), Expect = 0.0
Identities = 619/713 (86%), Gaps = 1/713 (0%)
Strand = Plus / Minus
Query: 348 tgcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtc 407
||||| || |||||||| ||||| | ||||| ||||||||||| |||||| | |||||
Sbjct: 882 tgcttgccagtgtatgttttgccgaagtcccactccttagggaccacgttgtagttggtc 823
Query: 408 agcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacag 467
| | || ||||| || ||| ||||||| || || ||||| |||||||| | ||| ||
Sbjct: 822 aatgtttttccatcacttgaggtgagctcgaaggagagaggctgtcccctgaaatcagag 763
Query: 468 ttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcct 527
||||||||||| | ||| ||||||||||||||||||| |||||| || |||| ||||||
Sbjct: 762 ttgatgtgccatatctgcccccagttgcggcccatcgagagccaaccggactccgttcct 703
Query: 528 ttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaaag 587
|| |||||||| |||| ||||| || || ||||| || ||||| ||||||||||| | |
Sbjct: 702 ttgatcttcactgatcggacatcgccagcaccaccgacattgctaattaggactgtcagg 643
Query: 588 aagaagtgccgaccgttgacagagaacctgacaccaccttcacggaggcacttaacacgg 647
|||||| ||||| ||| | ||| | |||||||| ||||| || || || || |||
Sbjct: 642 aagaagcctcgaccagcgactgcgaatcgcacaccaccatcacgaagacagttgacgcgg 583
Query: 648 cggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactggatg 707
||||||||||| ||||| | ||||||||||||||||||||||||||| || |||||||||
Sbjct: 582 cggtactggatgggcatcacgccggccttccagagcgcaatcttctcgaaggactggatg 523
Query: 708 gggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcggcgggaaggccg 767
|||||||||||||| |||||||||||||||||| |||||||||||||||||| || |||
Sbjct: 522 gggaggaggaaatggtggttgggcgggttgcagacgccgccggcgtcggcggggagaccg 463
Query: 768 tagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcagtac 827
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 462 aagttcggggcgcagaagttggtggccgtgacgacgatggaggttccggggaggcagtac 403
Query: 828 ttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaac 887
||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttgaggtcatccacgcacttcacctcgtagcagccgccgcacgccgcgccgcgctcgaac 343
Query: 888 agcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccgaac 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccgaac 283
Query: 948 ccgcacgccccaccgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggg 1007
|||||||| ||||||||||||||||| |||||||||||||||||||| ||| || |||
Sbjct: 282 ccgcacgcgccaccgatggcgtcttccgggtcggcggcgtagtaggaggccttg-gcgga 224
Query: 1008 gcgccactcggaaagcgcggaggagccgtaggaggacgggtgctggtgtccgg 1060
|||||||||||| || |||||||||||| || ||||||||||||||| ||||
Sbjct: 223 gcgccactcggagagggcggaggagccgagggtggacgggtgctggtggccgg 171
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagt 143
||||||||||||||| |||||||||||||| ||||
Sbjct: 1134 cttctattttgaatggtacatcaagcctctgtagt 1100
>ref|XM_473658.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 774
Score = 660 bits (333), Expect = 0.0
Identities = 619/713 (86%), Gaps = 1/713 (0%)
Strand = Plus / Minus
Query: 348 tgcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtc 407
||||| || |||||||| ||||| | ||||| ||||||||||| |||||| | |||||
Sbjct: 761 tgcttgccagtgtatgttttgccgaagtcccactccttagggaccacgttgtagttggtc 702
Query: 408 agcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacag 467
| | || ||||| || ||| ||||||| || || ||||| |||||||| | ||| ||
Sbjct: 701 aatgtttttccatcacttgaggtgagctcgaaggagagaggctgtcccctgaaatcagag 642
Query: 468 ttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcct 527
||||||||||| | ||| ||||||||||||||||||| |||||| || |||| ||||||
Sbjct: 641 ttgatgtgccatatctgcccccagttgcggcccatcgagagccaaccggactccgttcct 582
Query: 528 ttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaaag 587
|| |||||||| |||| ||||| || || ||||| || ||||| ||||||||||| | |
Sbjct: 581 ttgatcttcactgatcggacatcgccagcaccaccgacattgctaattaggactgtcagg 522
Query: 588 aagaagtgccgaccgttgacagagaacctgacaccaccttcacggaggcacttaacacgg 647
|||||| ||||| ||| | ||| | |||||||| ||||| || || || || |||
Sbjct: 521 aagaagcttcgaccagcgactgcgaatcgcacaccaccatcacgaagacagttgacgcgg 462
Query: 648 cggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactggatg 707
||||||||||| ||||| | ||||||||||||||||||||||||||| || |||||||||
Sbjct: 461 cggtactggatgggcatcacgccggccttccagagcgcaatcttctcgaaggactggatg 402
Query: 708 gggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcggcgggaaggccg 767
|||||||||||||| |||||||||||||||||| |||||||||||||||||| || |||
Sbjct: 401 gggaggaggaaatggtggttgggcgggttgcagacgccgccggcgtcggcggggagaccg 342
Query: 768 tagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcagtac 827
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 341 aagttcggggcgcagaagttggtggccgtgacgacgatggaggttccggggaggcagtac 282
Query: 828 ttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaac 887
||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttgaggtcatccacgcacttcacctcgtagcagccgccgcacgccgcgccgcgctcgaac 222
Query: 888 agcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccgaac 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 agcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccgaac 162
Query: 948 ccgcacgccccaccgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggg 1007
|||||||| ||||||||||||||||| |||||||||||||||||||| ||| || |||
Sbjct: 161 ccgcacgcgccaccgatggcgtcttccgggtcggcggcgtagtaggaggccttg-gcgga 103
Query: 1008 gcgccactcggaaagcgcggaggagccgtaggaggacgggtgctggtgtccgg 1060
|||||||||||| || |||||||||||| || ||||||||||||||| ||||
Sbjct: 102 gcgccactcggagagggcggaggagccgagggtggacgggtgctggtggccgg 50
>dbj|AK066414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067I11, full
insert sequence
Length = 3105
Score = 579 bits (292), Expect = e-162
Identities = 386/416 (92%), Gaps = 1/416 (0%)
Strand = Plus / Minus
Query: 645 cggcggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactgg 704
|||||||||||||| ||||| | ||||||||||||||||||||||||||| || ||||||
Sbjct: 586 cggcggtactggatgggcatcacgccggccttccagagcgcaatcttctcgaaggactgg 527
Query: 705 atggggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcggcgggaagg 764
||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct: 526 atggggaggaggaaatggtggttgggcgggttgcagacgccgccggcgtcggcggggaga 467
Query: 765 ccgtagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcag 824
||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 466 ccgaagttcggggcgcagaagttggtggccgtgacgacgatggaggttccggggaggcag 407
Query: 825 tacttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcg 884
|||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 406 tacttgaggtcatccacgcacttcacctcgtagcagccgccgcacgccgcgccgcgctcg 347
Query: 885 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 287
Query: 945 aacccgcacgccccaccgatggcgtcttcggggtcggcggcgtagtaggatgccatgaac 1004
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| || |
Sbjct: 286 aacccgcacgcgccaccgatggcgtcttccgggtcggcggcgtagtaggaggccttg-gc 228
Query: 1005 ggggcgccactcggaaagcgcggaggagccgtaggaggacgggtgctggtgtccgg 1060
|| |||||||||||| || |||||||||||| || ||||||||||||||| ||||
Sbjct: 227 ggagcgccactcggagagggcggaggagccgagggtggacgggtgctggtggccgg 172
Score = 115 bits (58), Expect = 6e-023
Identities = 199/246 (80%)
Strand = Plus / Minus
Query: 348 tgcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtc 407
||||| || |||||||| ||||| | ||||| ||||||||||| |||||| | |||||
Sbjct: 2863 tgcttgccagtgtatgttttgccgaagtcccactccttagggaccacgttgtagttggtc 2804
Query: 408 agcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacag 467
| | || ||||| || ||| ||||||| || || ||||| |||||||| | ||| ||
Sbjct: 2803 aatgtttttccatcacttgaggtgagctcgaaggagagaggctgtcccctgaaatcagag 2744
Query: 468 ttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcct 527
||||||||||| | ||| ||||||||||||||||||| |||||| || |||| ||||||
Sbjct: 2743 ttgatgtgccatatctgcccccagttgcggcccatcgagagccaaccggactccgttcct 2684
Query: 528 ttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaaag 587
|| |||||||| |||| ||||| || || ||||| || ||||| ||||||||||| | |
Sbjct: 2683 ttgatcttcactgatcggacatcgccagcaccaccgacattgctaattaggactgtcagg 2624
Query: 588 aagaag 593
||||||
Sbjct: 2623 aagaag 2618
>gb|AACV01010380.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010380, whole
genome shotgun sequence
Length = 39984
Score = 486 bits (245), Expect = e-134
Identities = 299/317 (94%)
Strand = Plus / Minus
Query: 645 cggcggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactgg 704
|||||||||||||| ||||| | ||||||||||||||||||||||||||| || ||||||
Sbjct: 7980 cggcggtactggatgggcatcacgccggccttccagagcgcaatcttctcgaaggactgg 7921
Query: 705 atggggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcggcgggaagg 764
||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct: 7920 atggggaggaggaaatggtggttgggcgggttgcagacgccgccggcgtcggcggggaga 7861
Query: 765 ccgtagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcag 824
||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 7860 ccgaagttcggggcgcagaagttggtggccgtgacgacgatggaggttccggggaggcag 7801
Query: 825 tacttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcg 884
|||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7800 tacttgaggtcatccacgcacttcacctcgtagcagccgccgcacgccgcgccgcgctcg 7741
Query: 885 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7740 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 7681
Query: 945 aacccgcacgccccacc 961
||||||||||| |||||
Sbjct: 7680 aacccgcacgcgccacc 7664
Score = 115 bits (58), Expect = 6e-023
Identities = 199/246 (80%)
Strand = Plus / Minus
Query: 348 tgcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtc 407
||||| || |||||||| ||||| | ||||| ||||||||||| |||||| | |||||
Sbjct: 10257 tgcttgccagtgtatgttttgccgaagtcccactccttagggaccacgttgtagttggtc 10198
Query: 408 agcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacag 467
| | || ||||| || ||| ||||||| || || ||||| |||||||| | ||| ||
Sbjct: 10197 aatgtttttccatcacttgaggtgagctcgaaggagagaggctgtcccctgaaatcagag 10138
Query: 468 ttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcct 527
||||||||||| | ||| ||||||||||||||||||| |||||| || |||| ||||||
Sbjct: 10137 ttgatgtgccatatctgcccccagttgcggcccatcgagagccaaccggactccgttcct 10078
Query: 528 ttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaaag 587
|| |||||||| |||| ||||| || || ||||| || ||||| ||||||||||| | |
Sbjct: 10077 ttgatcttcactgatcggacatcgccagcaccaccgacattgctaattaggactgtcagg 10018
Query: 588 aagaag 593
||||||
Sbjct: 10017 aagaag 10012
Score = 99.6 bits (50), Expect = 3e-018
Identities = 90/102 (88%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 959 accgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgg 1018
||||||||||||||| |||||||||||||||||||| ||| || ||| |||||||||||
Sbjct: 7392 accgatggcgtcttccgggtcggcggcgtagtaggaggccttg-gcggagcgccactcgg 7334
Query: 1019 aaagcgcggaggagccgtaggaggacgggtgctggtgtccgg 1060
| || |||||||||||| || ||||||||||||||| ||||
Sbjct: 7333 agagggcggaggagccgagggtggacgggtgctggtggccgg 7292
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagt 143
||||||||||||||| |||||||||||||| ||||
Sbjct: 10509 cttctattttgaatggtacatcaagcctctgtagt 10475
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 486 bits (245), Expect = e-134
Identities = 299/317 (94%)
Strand = Plus / Minus
Query: 645 cggcggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactgg 704
|||||||||||||| ||||| | ||||||||||||||||||||||||||| || ||||||
Sbjct: 3235934 cggcggtactggatgggcatcacgccggccttccagagcgcaatcttctcgaaggactgg 3235875
Query: 705 atggggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcggcgggaagg 764
||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct: 3235874 atggggaggaggaaatggtggttgggcgggttgcagacgccgccggcgtcggcggggaga 3235815
Query: 765 ccgtagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcag 824
||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 3235814 ccgaagttcggggcgcagaagttggtggccgtgacgacgatggaggttccggggaggcag 3235755
Query: 825 tacttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcg 884
|||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3235754 tacttgaggtcatccacgcacttcacctcgtagcagccgccgcacgccgcgccgcgctcg 3235695
Query: 885 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3235694 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 3235635
Query: 945 aacccgcacgccccacc 961
||||||||||| |||||
Sbjct: 3235634 aacccgcacgcgccacc 3235618
Score = 115 bits (58), Expect = 6e-023
Identities = 199/246 (80%)
Strand = Plus / Minus
Query: 348 tgcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtc 407
||||| || |||||||| ||||| | ||||| ||||||||||| |||||| | |||||
Sbjct: 3238211 tgcttgccagtgtatgttttgccgaagtcccactccttagggaccacgttgtagttggtc 3238152
Query: 408 agcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacag 467
| | || ||||| || ||| ||||||| || || ||||| |||||||| | ||| ||
Sbjct: 3238151 aatgtttttccatcacttgaggtgagctcgaaggagagaggctgtcccctgaaatcagag 3238092
Query: 468 ttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcct 527
||||||||||| | ||| ||||||||||||||||||| |||||| || |||| ||||||
Sbjct: 3238091 ttgatgtgccatatctgcccccagttgcggcccatcgagagccaaccggactccgttcct 3238032
Query: 528 ttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaaag 587
|| |||||||| |||| ||||| || || ||||| || ||||| ||||||||||| | |
Sbjct: 3238031 ttgatcttcactgatcggacatcgccagcaccaccgacattgctaattaggactgtcagg 3237972
Query: 588 aagaag 593
||||||
Sbjct: 3237971 aagaag 3237966
Score = 99.6 bits (50), Expect = 3e-018
Identities = 90/102 (88%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 959 accgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgg 1018
||||||||||||||| |||||||||||||||||||| ||| || ||| |||||||||||
Sbjct: 3235346 accgatggcgtcttccgggtcggcggcgtagtaggaggccttg-gcggagcgccactcgg 3235288
Query: 1019 aaagcgcggaggagccgtaggaggacgggtgctggtgtccgg 1060
| || |||||||||||| || ||||||||||||||| ||||
Sbjct: 3235287 agagggcggaggagccgagggtggacgggtgctggtggccgg 3235246
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagt 143
||||||||||||||| |||||||||||||| ||||
Sbjct: 3238463 cttctattttgaatggtacatcaagcctctgtagt 3238429
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 486 bits (245), Expect = e-134
Identities = 299/317 (94%)
Strand = Plus / Minus
Query: 645 cggcggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactgg 704
|||||||||||||| ||||| | ||||||||||||||||||||||||||| || ||||||
Sbjct: 7273198 cggcggtactggatgggcatcacgccggccttccagagcgcaatcttctcgaaggactgg 7273139
Query: 705 atggggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcggcgggaagg 764
||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct: 7273138 atggggaggaggaaatggtggttgggcgggttgcagacgccgccggcgtcggcggggaga 7273079
Query: 765 ccgtagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcag 824
||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 7273078 ccgaagttcggggcgcagaagttggtggccgtgacgacgatggaggttccggggaggcag 7273019
Query: 825 tacttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcg 884
|||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7273018 tacttgaggtcatccacgcacttcacctcgtagcagccgccgcacgccgcgccgcgctcg 7272959
Query: 885 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7272958 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 7272899
Query: 945 aacccgcacgccccacc 961
||||||||||| |||||
Sbjct: 7272898 aacccgcacgcgccacc 7272882
Score = 115 bits (58), Expect = 6e-023
Identities = 199/246 (80%)
Strand = Plus / Minus
Query: 348 tgcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtc 407
||||| || |||||||| ||||| | ||||| ||||||||||| |||||| | |||||
Sbjct: 7275475 tgcttgccagtgtatgttttgccgaagtcccactccttagggaccacgttgtagttggtc 7275416
Query: 408 agcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacag 467
| | || ||||| || ||| ||||||| || || ||||| |||||||| | ||| ||
Sbjct: 7275415 aatgtttttccatcacttgaggtgagctcgaaggagagaggctgtcccctgaaatcagag 7275356
Query: 468 ttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcct 527
||||||||||| | ||| ||||||||||||||||||| |||||| || |||| ||||||
Sbjct: 7275355 ttgatgtgccatatctgcccccagttgcggcccatcgagagccaaccggactccgttcct 7275296
Query: 528 ttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaaag 587
|| |||||||| |||| ||||| || || ||||| || ||||| ||||||||||| | |
Sbjct: 7275295 ttgatcttcactgatcggacatcgccagcaccaccgacattgctaattaggactgtcagg 7275236
Query: 588 aagaag 593
||||||
Sbjct: 7275235 aagaag 7275230
Score = 99.6 bits (50), Expect = 3e-018
Identities = 90/102 (88%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 959 accgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgg 1018
||||||||||||||| |||||||||||||||||||| ||| || ||| |||||||||||
Sbjct: 7272610 accgatggcgtcttccgggtcggcggcgtagtaggaggccttg-gcggagcgccactcgg 7272552
Query: 1019 aaagcgcggaggagccgtaggaggacgggtgctggtgtccgg 1060
| || |||||||||||| || ||||||||||||||| ||||
Sbjct: 7272551 agagggcggaggagccgagggtggacgggtgctggtggccgg 7272510
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagt 143
||||||||||||||| |||||||||||||| ||||
Sbjct: 7275727 cttctattttgaatggtacatcaagcctctgtagt 7275693
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 486 bits (245), Expect = e-134
Identities = 299/317 (94%)
Strand = Plus / Minus
Query: 645 cggcggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactgg 704
|||||||||||||| ||||| | ||||||||||||||||||||||||||| || ||||||
Sbjct: 26417297 cggcggtactggatgggcatcacgccggccttccagagcgcaatcttctcgaaggactgg 26417238
Query: 705 atggggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcggcgggaagg 764
||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct: 26417237 atggggaggaggaaatggtggttgggcgggttgcagacgccgccggcgtcggcggggaga 26417178
Query: 765 ccgtagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcag 824
||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 26417177 ccgaagttcggggcgcagaagttggtggccgtgacgacgatggaggttccggggaggcag 26417118
Query: 825 tacttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcg 884
|||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 26417117 tacttgaggtcatccacgcacttcacctcgtagcagccgccgcacgccgcgccgcgctcg 26417058
Query: 885 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26417057 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 26416998
Query: 945 aacccgcacgccccacc 961
||||||||||| |||||
Sbjct: 26416997 aacccgcacgcgccacc 26416981
Score = 115 bits (58), Expect = 6e-023
Identities = 199/246 (80%)
Strand = Plus / Minus
Query: 348 tgcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtc 407
||||| || |||||||| ||||| | ||||| ||||||||||| |||||| | |||||
Sbjct: 26419574 tgcttgccagtgtatgttttgccgaagtcccactccttagggaccacgttgtagttggtc 26419515
Query: 408 agcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacag 467
| | || ||||| || ||| ||||||| || || ||||| |||||||| | ||| ||
Sbjct: 26419514 aatgtttttccatcacttgaggtgagctcgaaggagagaggctgtcccctgaaatcagag 26419455
Query: 468 ttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcct 527
||||||||||| | ||| ||||||||||||||||||| |||||| || |||| ||||||
Sbjct: 26419454 ttgatgtgccatatctgcccccagttgcggcccatcgagagccaaccggactccgttcct 26419395
Query: 528 ttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaaag 587
|| |||||||| |||| ||||| || || ||||| || ||||| ||||||||||| | |
Sbjct: 26419394 ttgatcttcactgatcggacatcgccagcaccaccgacattgctaattaggactgtcagg 26419335
Query: 588 aagaag 593
||||||
Sbjct: 26419334 aagaag 26419329
Score = 99.6 bits (50), Expect = 3e-018
Identities = 90/102 (88%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 959 accgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgg 1018
||||||||||||||| |||||||||||||||||||| ||| || ||| |||||||||||
Sbjct: 26416709 accgatggcgtcttccgggtcggcggcgtagtaggaggccttg-gcggagcgccactcgg 26416651
Query: 1019 aaagcgcggaggagccgtaggaggacgggtgctggtgtccgg 1060
| || |||||||||||| || ||||||||||||||| ||||
Sbjct: 26416650 agagggcggaggagccgagggtggacgggtgctggtggccgg 26416609
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagt 143
||||||||||||||| |||||||||||||| ||||
Sbjct: 26419826 cttctattttgaatggtacatcaagcctctgtagt 26419792
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01,
complete sequence
Length = 186325
Score = 486 bits (245), Expect = e-134
Identities = 299/317 (94%)
Strand = Plus / Minus
Query: 645 cggcggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactgg 704
|||||||||||||| ||||| | ||||||||||||||||||||||||||| || ||||||
Sbjct: 132209 cggcggtactggatgggcatcacgccggccttccagagcgcaatcttctcgaaggactgg 132150
Query: 705 atggggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcggcgggaagg 764
||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct: 132149 atggggaggaggaaatggtggttgggcgggttgcagacgccgccggcgtcggcggggaga 132090
Query: 765 ccgtagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcag 824
||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 132089 ccgaagttcggggcgcagaagttggtggccgtgacgacgatggaggttccggggaggcag 132030
Query: 825 tacttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcg 884
|||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 132029 tacttgaggtcatccacgcacttcacctcgtagcagccgccgcacgccgcgccgcgctcg 131970
Query: 885 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131969 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 131910
Query: 945 aacccgcacgccccacc 961
||||||||||| |||||
Sbjct: 131909 aacccgcacgcgccacc 131893
Score = 115 bits (58), Expect = 6e-023
Identities = 199/246 (80%)
Strand = Plus / Minus
Query: 348 tgcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtc 407
||||| || |||||||| ||||| | ||||| ||||||||||| |||||| | |||||
Sbjct: 134486 tgcttgccagtgtatgttttgccgaagtcccactccttagggaccacgttgtagttggtc 134427
Query: 408 agcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacag 467
| | || ||||| || ||| ||||||| || || ||||| |||||||| | ||| ||
Sbjct: 134426 aatgtttttccatcacttgaggtgagctcgaaggagagaggctgtcccctgaaatcagag 134367
Query: 468 ttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcct 527
||||||||||| | ||| ||||||||||||||||||| |||||| || |||| ||||||
Sbjct: 134366 ttgatgtgccatatctgcccccagttgcggcccatcgagagccaaccggactccgttcct 134307
Query: 528 ttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaaag 587
|| |||||||| |||| ||||| || || ||||| || ||||| ||||||||||| | |
Sbjct: 134306 ttgatcttcactgatcggacatcgccagcaccaccgacattgctaattaggactgtcagg 134247
Query: 588 aagaag 593
||||||
Sbjct: 134246 aagaag 134241
Score = 99.6 bits (50), Expect = 3e-018
Identities = 90/102 (88%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 959 accgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgg 1018
||||||||||||||| |||||||||||||||||||| ||| || ||| |||||||||||
Sbjct: 131621 accgatggcgtcttccgggtcggcggcgtagtaggaggccttg-gcggagcgccactcgg 131563
Query: 1019 aaagcgcggaggagccgtaggaggacgggtgctggtgtccgg 1060
| || |||||||||||| || ||||||||||||||| ||||
Sbjct: 131562 agagggcggaggagccgagggtggacgggtgctggtggccgg 131521
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagt 143
||||||||||||||| |||||||||||||| ||||
Sbjct: 134738 cttctattttgaatggtacatcaagcctctgtagt 134704
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 486 bits (245), Expect = e-134
Identities = 299/317 (94%)
Strand = Plus / Minus
Query: 645 cggcggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactgg 704
|||||||||||||| ||||| | ||||||||||||||||||||||||||| || ||||||
Sbjct: 29459193 cggcggtactggatgggcatcacgccggccttccagagcgcaatcttctcgaaggactgg 29459134
Query: 705 atggggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcggcgggaagg 764
||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct: 29459133 atggggaggaggaaatggtggttgggcgggttgcagacgccgccggcgtcggcggggaga 29459074
Query: 765 ccgtagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcag 824
||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 29459073 ccgaagttcggggcgcagaagttggtggccgtgacgacgatggaggttccggggaggcag 29459014
Query: 825 tacttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcg 884
|||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 29459013 tacttgaggtcatccacgcacttcacctcgtagcagccgccgcacgccgcgccgcgctcg 29458954
Query: 885 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29458953 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 29458894
Query: 945 aacccgcacgccccacc 961
||||||||||| |||||
Sbjct: 29458893 aacccgcacgcgccacc 29458877
Score = 115 bits (58), Expect = 6e-023
Identities = 199/246 (80%)
Strand = Plus / Minus
Query: 348 tgcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtc 407
||||| || |||||||| ||||| | ||||| ||||||||||| |||||| | |||||
Sbjct: 29461470 tgcttgccagtgtatgttttgccgaagtcccactccttagggaccacgttgtagttggtc 29461411
Query: 408 agcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacag 467
| | || ||||| || ||| ||||||| || || ||||| |||||||| | ||| ||
Sbjct: 29461410 aatgtttttccatcacttgaggtgagctcgaaggagagaggctgtcccctgaaatcagag 29461351
Query: 468 ttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcct 527
||||||||||| | ||| ||||||||||||||||||| |||||| || |||| ||||||
Sbjct: 29461350 ttgatgtgccatatctgcccccagttgcggcccatcgagagccaaccggactccgttcct 29461291
Query: 528 ttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaaag 587
|| |||||||| |||| ||||| || || ||||| || ||||| ||||||||||| | |
Sbjct: 29461290 ttgatcttcactgatcggacatcgccagcaccaccgacattgctaattaggactgtcagg 29461231
Query: 588 aagaag 593
||||||
Sbjct: 29461230 aagaag 29461225
Score = 99.6 bits (50), Expect = 3e-018
Identities = 90/102 (88%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 959 accgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgg 1018
||||||||||||||| |||||||||||||||||||| ||| || ||| |||||||||||
Sbjct: 29458605 accgatggcgtcttccgggtcggcggcgtagtaggaggccttg-gcggagcgccactcgg 29458547
Query: 1019 aaagcgcggaggagccgtaggaggacgggtgctggtgtccgg 1060
| || |||||||||||| || ||||||||||||||| ||||
Sbjct: 29458546 agagggcggaggagccgagggtggacgggtgctggtggccgg 29458505
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagt 143
||||||||||||||| |||||||||||||| ||||
Sbjct: 29461722 cttctattttgaatggtacatcaagcctctgtagt 29461688
>gb|AU069455.1|AU069455 AU069455 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61825_13A, mRNA sequence
Length = 356
Score = 408 bits (206), Expect = e-111
Identities = 271/292 (92%), Gaps = 1/292 (0%)
Strand = Plus / Minus
Query: 769 agttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcagtact 828
||||||||||||||||||||||| |||||||||| |||||||| |||||||| |||||||
Sbjct: 344 agttcggggcgcagaagttggtgnccgtgacgacgatggaggttccggggagncagtact 285
Query: 829 tgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaaca 888
|||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgaggtcatccacgcacttcacctcgtagcagccgccgcacgccgcgccgcgctcgaaca 225
Query: 889 gcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccgaacc 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccgaacc 165
Query: 949 cgcacgccccaccgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacgggg 1008
||||||| ||||||||||||||||| |||||||||||||||||||| ||| || ||| |
Sbjct: 164 cgcacgcgccaccgatggcgtcttccgggtcggcggcgtagtaggaggccttg-gcggag 106
Query: 1009 cgccactcggaaagcgcggaggagccgtaggaggacgggtgctggtgtccgg 1060
||||||||||| || |||||||||||| || ||||||||||||||| ||||
Sbjct: 105 cgccactcggagagggcggaggagccgagggtggacgggtgctggtggccgg 54
>gb|AU069463.1|AU069463 AU069463 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61881_1A, mRNA sequence
Length = 289
Score = 333 bits (168), Expect = 1e-088
Identities = 221/238 (92%), Gaps = 2/238 (0%)
Strand = Plus / Minus
Query: 823 agtacttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgct 882
|||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 289 agtacttgaggtcatcnacgcacttcacctcgtagcagccgccgcacgccgcgccgcgct 230
Query: 883 cgaacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccc 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cgaacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccc 170
Query: 943 cgaacccgcacgccccaccgatggcgtcttcggggtcggcggcgtagtaggatgccatga 1002
||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct: 169 cgaacccgcacgcgccaccgatggcgtcttccgggtcggcggcgtagtaggaggccttg- 111
Query: 1003 acggggcgccactcggaaagcgcggaggagccgtaggaggacgggtgctggtgtccgg 1060
||| |||||||||||| || |||||||||||| || ||||||||||||||| ||||
Sbjct: 110 -cggagcgccactcggagagggcggaggagccgagggtggacgggtgctggtggccgg 54
>gb|AU069357.1|AU069357 AU069357 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60811_11A, mRNA sequence
Length = 269
Score = 270 bits (136), Expect = 2e-069
Identities = 196/217 (90%), Gaps = 1/217 (0%)
Strand = Plus / Minus
Query: 844 acttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagcc 903
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 269 acttcacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgcngtgctcagcc 210
Query: 904 ccaccgtcgccatcccgtacccgtgcttccccagatccccgaacccgcacgccccaccga 963
|||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 209 ccaccgtcgcnatcccgtacccgtgcttcccnngatccccgaacccgcacgcgccaccga 150
Query: 964 tggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcggaaagc 1023
||| |||||| |||||||||||||||||||| ||| || ||| |||| |||||| ||
Sbjct: 149 tggngtcttccgggtcggcggcgtagtaggaggccttg-gcggagcgcnactcggngagg 91
Query: 1024 gcggaggagccgtaggaggacgggtgctggtgtccgg 1060
|||||||||||| || ||||||||||||||| ||||
Sbjct: 90 gcggaggagccgagggtggacgggtgctggtggccgg 54
>gb|CB000860.1|CB000860 S345K_B12 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 636
Score = 147 bits (74), Expect = 2e-032
Identities = 222/270 (82%), Gaps = 1/270 (0%)
Strand = Plus / Minus
Query: 466 agttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttc 525
||||||||||||| | ||| ||||||||||||||||||| |||||| || |||| ||||
Sbjct: 271 agttgatgtgccatatctgcccccagttgcggcccatcgagagccagccggactccgttc 212
Query: 526 ctttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaa 585
|||| || ||| | |||| ||||| || || ||||| || ||||| ||||||||||| |
Sbjct: 211 ctttgatgttctctgatcggacatcgccagcaccaccgacattgctaattaggactgtca 152
Query: 586 agaagaagtgccgaccgttgacagagaacctgacaccaccttcacggaggcacttaacac 645
||||||| ||||| ||| | ||| | |||||||| ||| | || || || || |
Sbjct: 151 ggaagaagcttcgaccagcgactgtgaatcgcacaccaccatcaagaagacagttgacgc 92
Query: 646 ggcggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactgga 705
||||||||||||| ||||| | |||||||||||||||||||||||||| || |||||||
Sbjct: 91 ggcggtactggatgggcatcactccggccttccagagcgcaatcttctcgaaggactgga 32
Query: 706 tggggaggaggaaatgatggttgggcgggt 735
|||||||||||||||| ||| |||||||||
Sbjct: 31 tggggaggaggaaatggtgg-tgggcgggt 3
Score = 44.1 bits (22), Expect = 0.17
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 114 attttgaatgatacatcaagcctctttagt 143
|||||||||| |||||||||||||| ||||
Sbjct: 636 attttgaatggtacatcaagcctctgtagt 607
>dbj|AK111100.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G12, full
insert sequence
Length = 893
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 856 agcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcca 915
||||| ||||||||| |||||||| | ||||||||||||||||||| || ||||| |
Sbjct: 241 agcaggcgccgcacgacgcgccgccgttgaacagcgccgtgctcagcgccgccgtccgcg 182
Query: 916 tcccgtacccg 926
|||||||||||
Sbjct: 181 tcccgtacccg 171
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence
Length = 182756
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 856 agcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcca 915
||||| ||||||||| |||||||| | ||||||||||||||||||| || ||||| |
Sbjct: 159856 agcaggcgccgcacgacgcgccgccgttgaacagcgccgtgctcagcgccgccgtccgcg 159915
Query: 916 tcccgtacccg 926
|||||||||||
Sbjct: 159916 tcccgtacccg 159926
>gb|AACV01000580.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000580, whole
genome shotgun sequence
Length = 47299
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 856 agcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcca 915
||||| ||||||||| |||||||| | ||||||||||||||||||| || ||||| |
Sbjct: 19717 agcaggcgccgcacgacgcgccgccgttgaacagcgccgtgctcagcgccgccgtccgcg 19776
Query: 916 tcccgtacccg 926
|||||||||||
Sbjct: 19777 tcccgtacccg 19787
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 856 agcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcca 915
||||| ||||||||| |||||||| | ||||||||||||||||||| || ||||| |
Sbjct: 8193517 agcaggcgccgcacgacgcgccgccgttgaacagcgccgtgctcagcgccgccgtccgcg 8193576
Query: 916 tcccgtacccg 926
|||||||||||
Sbjct: 8193577 tcccgtacccg 8193587
>ref|NM_188790.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 756
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 856 agcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcca 915
||||| ||||||||| |||||||| | ||||||||||||||||||| || ||||| |
Sbjct: 232 agcaggcgccgcacgacgcgccgccgttgaacagcgccgtgctcagcgccgccgtccgcg 173
Query: 916 tcccgtacccg 926
|||||||||||
Sbjct: 172 tcccgtacccg 162
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 856 agcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcca 915
||||| ||||||||| |||||||| | ||||||||||||||||||| || ||||| |
Sbjct: 8193357 agcaggcgccgcacgacgcgccgccgttgaacagcgccgtgctcagcgccgccgtccgcg 8193416
Query: 916 tcccgtacccg 926
|||||||||||
Sbjct: 8193417 tcccgtacccg 8193427
>dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0034C11
Length = 139399
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 856 agcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcca 915
||||| ||||||||| |||||||| | ||||||||||||||||||| || ||||| |
Sbjct: 113453 agcaggcgccgcacgacgcgccgccgttgaacagcgccgtgctcagcgccgccgtccgcg 113512
Query: 916 tcccgtacccg 926
|||||||||||
Sbjct: 113513 tcccgtacccg 113523
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 856 agcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcca 915
||||| ||||||||| |||||||| | ||||||||||||||||||| || ||||| |
Sbjct: 8244058 agcaggcgccgcacgacgcgccgccgttgaacagcgccgtgctcagcgccgccgtccgcg 8244117
Query: 916 tcccgtacccg 926
|||||||||||
Sbjct: 8244118 tcccgtacccg 8244128
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 856 agcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcca 915
||||| ||||||||| |||||||| | ||||||||||||||||||| || ||||| |
Sbjct: 8244058 agcaggcgccgcacgacgcgccgccgttgaacagcgccgtgctcagcgccgccgtccgcg 8244117
Query: 916 tcccgtacccg 926
|||||||||||
Sbjct: 8244118 tcccgtacccg 8244128
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 856 agcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcca 915
||||| ||||||||| |||||||| | ||||||||||||||||||| || ||||| |
Sbjct: 8195735 agcaggcgccgcacgacgcgccgccgttgaacagcgccgtgctcagcgccgccgtccgcg 8195794
Query: 916 tcccgtacccg 926
|||||||||||
Sbjct: 8195795 tcccgtacccg 8195805
>dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052B04, full
insert sequence
Length = 1088
Score = 58.0 bits (29), Expect = 1e-005
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 840 acgcacttgacctcgtagcagccgccgcacgccgcgcc-gcgctcgaacagcgccgtgct 898
||||||||||||||||||||| ||||||| | ||||| |||| ||||||||| ||||||
Sbjct: 378 acgcacttgacctcgtagcaggcgccgcagccggcgccggcgc-cgaacagcggcgtgct 320
Query: 899 cagccccaccgtc 911
|| | ||||||||
Sbjct: 319 caccgccaccgtc 307
>dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029P10, full
insert sequence
Length = 1311
Score = 58.0 bits (29), Expect = 1e-005
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 728 gggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagtt 787
|||||||||||| ||||||| ||||| ||| ||||||||||| || | |||||||||
Sbjct: 417 gggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagtt 358
Query: 788 ggtggccgt 796
|||||||||
Sbjct: 357 ggtggccgt 349
Score = 46.1 bits (23), Expect = 0.043
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 284 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 246
>dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G10, full
insert sequence
Length = 2440
Score = 58.0 bits (29), Expect = 1e-005
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 728 gggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagtt 787
|||||||||||| ||||||| ||||| ||| ||||||||||| || | |||||||||
Sbjct: 416 gggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagtt 357
Query: 788 ggtggccgt 796
|||||||||
Sbjct: 356 ggtggccgt 348
Score = 46.1 bits (23), Expect = 0.043
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 283 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 245
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0543D10
Length = 134866
Score = 58.0 bits (29), Expect = 1e-005
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 840 acgcacttgacctcgtagcagccgccgcacgccgcgcc-gcgctcgaacagcgccgtgct 898
||||||||||||||||||||| ||||||| | ||||| |||| ||||||||| ||||||
Sbjct: 14156 acgcacttgacctcgtagcaggcgccgcagccggcgccggcgc-cgaacagcggcgtgct 14098
Query: 899 cagccccaccgtc 911
|| | ||||||||
Sbjct: 14097 caccgccaccgtc 14085
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0604E01
Length = 159049
Score = 58.0 bits (29), Expect = 1e-005
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 840 acgcacttgacctcgtagcagccgccgcacgccgcgcc-gcgctcgaacagcgccgtgct 898
||||||||||||||||||||| ||||||| | ||||| |||| ||||||||| ||||||
Sbjct: 128178 acgcacttgacctcgtagcaggcgccgcagccggcgccggcgc-cgaacagcggcgtgct 128120
Query: 899 cagccccaccgtc 911
|| | ||||||||
Sbjct: 128119 caccgccaccgtc 128107
>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0018K15, complete sequence
Length = 168519
Score = 58.0 bits (29), Expect = 1e-005
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 728 gggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagtt 787
|||||||||||| ||||||| ||||| ||| ||||||||||| || | |||||||||
Sbjct: 38802 gggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagtt 38861
Query: 788 ggtggccgt 796
|||||||||
Sbjct: 38862 ggtggccgt 38870
Score = 46.1 bits (23), Expect = 0.043
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 38935 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 38973
>gb|AACV01012416.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012416, whole
genome shotgun sequence
Length = 33179
Score = 58.0 bits (29), Expect = 1e-005
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 728 gggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagtt 787
|||||||||||| ||||||| ||||| ||| ||||||||||| || | |||||||||
Sbjct: 9287 gggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagtt 9228
Query: 788 ggtggccgt 796
|||||||||
Sbjct: 9227 ggtggccgt 9219
Score = 46.1 bits (23), Expect = 0.043
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 9154 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 9116
>ref|XM_475418.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 741
Score = 58.0 bits (29), Expect = 1e-005
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 728 gggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagtt 787
|||||||||||| ||||||| ||||| ||| ||||||||||| || | |||||||||
Sbjct: 354 gggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagtt 295
Query: 788 ggtggccgt 796
|||||||||
Sbjct: 294 ggtggccgt 286
Score = 46.1 bits (23), Expect = 0.043
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 221 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 183
>ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1088
Score = 58.0 bits (29), Expect = 1e-005
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 840 acgcacttgacctcgtagcagccgccgcacgccgcgcc-gcgctcgaacagcgccgtgct 898
||||||||||||||||||||| ||||||| | ||||| |||| ||||||||| ||||||
Sbjct: 378 acgcacttgacctcgtagcaggcgccgcagccggcgccggcgc-cgaacagcggcgtgct 320
Query: 899 cagccccaccgtc 911
|| | ||||||||
Sbjct: 319 caccgccaccgtc 307
>ref|NT_107213.1| Oryza sativa (japonica cultivar-group)
Length = 2036819
Score = 58.0 bits (29), Expect = 1e-005
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 728 gggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagtt 787
|||||||||||| ||||||| ||||| ||| ||||||||||| || | |||||||||
Sbjct: 1907102 gggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagtt 1907161
Query: 788 ggtggccgt 796
|||||||||
Sbjct: 1907162 ggtggccgt 1907170
Score = 46.1 bits (23), Expect = 0.043
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 1907235 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 1907273
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 58.0 bits (29), Expect = 1e-005
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 840 acgcacttgacctcgtagcagccgccgcacgccgcgcc-gcgctcgaacagcgccgtgct 898
||||||||||||||||||||| ||||||| | ||||| |||| ||||||||| ||||||
Sbjct: 27892596 acgcacttgacctcgtagcaggcgccgcagccggcgccggcgc-cgaacagcggcgtgct 27892538
Query: 899 cagccccaccgtc 911
|| | ||||||||
Sbjct: 27892537 caccgccaccgtc 27892525
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 58.0 bits (29), Expect = 1e-005
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 728 gggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagtt 787
|||||||||||| ||||||| ||||| ||| ||||||||||| || | |||||||||
Sbjct: 5729270 gggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagtt 5729329
Query: 788 ggtggccgt 796
|||||||||
Sbjct: 5729330 ggtggccgt 5729338
Score = 46.1 bits (23), Expect = 0.043
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 5729403 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 5729441
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 58.0 bits (29), Expect = 1e-005
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 728 gggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagtt 787
|||||||||||| ||||||| ||||| ||| ||||||||||| || | |||||||||
Sbjct: 23029583 gggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagtt 23029642
Query: 788 ggtggccgt 796
|||||||||
Sbjct: 23029643 ggtggccgt 23029651
Score = 46.1 bits (23), Expect = 0.043
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 23029716 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 23029754
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 58.0 bits (29), Expect = 1e-005
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 728 gggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagtt 787
|||||||||||| ||||||| ||||| ||| ||||||||||| || | |||||||||
Sbjct: 23353266 gggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagtt 23353325
Query: 788 ggtggccgt 796
|||||||||
Sbjct: 23353326 ggtggccgt 23353334
Score = 46.1 bits (23), Expect = 0.043
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 23353399 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 23353437
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 58.0 bits (29), Expect = 1e-005
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 840 acgcacttgacctcgtagcagccgccgcacgccgcgcc-gcgctcgaacagcgccgtgct 898
||||||||||||||||||||| ||||||| | ||||| |||| ||||||||| ||||||
Sbjct: 28130683 acgcacttgacctcgtagcaggcgccgcagccggcgccggcgc-cgaacagcggcgtgct 28130625
Query: 899 cagccccaccgtc 911
|| | ||||||||
Sbjct: 28130624 caccgccaccgtc 28130612
>dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1008_D02, ***
SEQUENCING IN PROGRESS ***
Length = 140327
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 849 acctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgc 892
||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 119753 acctcgtagcagccgccgcacgcgctgccgcgcccgaacagcgc 119796
>dbj|AK101940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074I02, full
insert sequence
Length = 1156
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 849 acctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgc 892
||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 447 acctcgtagcagccgccgcacgcgctgccgcgcccgaacagcgc 404
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 849 acctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgc 892
||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 2065812 acctcgtagcagccgccgcacgcgctgccgcgcccgaacagcgc 2065769
>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0040H10
Length = 173301
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 849 acctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgc 892
||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 83520 acctcgtagcagccgccgcacgcgctgccgcgcccgaacagcgc 83477
>gb|AACV01014579.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014579, whole
genome shotgun sequence
Length = 19733
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 849 acctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgc 892
||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 18261 acctcgtagcagccgccgcacgcgctgccgcgcccgaacagcgc 18304
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 849 acctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgc 892
||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 5968611 acctcgtagcagccgccgcacgcgctgccgcgcccgaacagcgc 5968568
Score = 52.0 bits (26), Expect = 7e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgccatcccgtac 923
||||||| ||||||| ||||||||||||||||||||| || ||||| | ||||||||
Sbjct: 11459704 ccgcacgacgcgccgtcgtcgaacagcgccgtgctcagcgccgccgtccgcgtcccgtac 11459645
Query: 924 cc 925
||
Sbjct: 11459644 cc 11459643
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 849 acctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgc 892
||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 23667348 acctcgtagcagccgccgcacgcgctgccgcgcccgaacagcgc 23667305
Score = 52.0 bits (26), Expect = 7e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgccatcccgtac 923
||||||| ||||||| ||||||||||||||||||||| || ||||| | ||||||||
Sbjct: 29158441 ccgcacgacgcgccgtcgtcgaacagcgccgtgctcagcgccgccgtccgcgtcccgtac 29158382
Query: 924 cc 925
||
Sbjct: 29158381 cc 29158380
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 849 acctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgc 892
||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 24600327 acctcgtagcagccgccgcacgcgctgccgcgcccgaacagcgc 24600284
Score = 52.0 bits (26), Expect = 7e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgccatcccgtac 923
||||||| ||||||| ||||||||||||||||||||| || ||||| | ||||||||
Sbjct: 30004699 ccgcacgacgcgccgtcgtcgaacagcgccgtgctcagcgccgccgtccgcgtcccgtac 30004640
Query: 924 cc 925
||
Sbjct: 30004639 cc 30004638
>gb|CA756483.1|CA756483 BR030043000_PLATE_E06_45_049.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030043000_PLATE_E06_45_049.ab1 similar to (AF247165)
alpha-expansin OsEXP10 [Oryza sativa], mRNA sequence
Length = 625
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagt 143
||||||||||||||| |||||||||||||| ||||
Sbjct: 360 cttctattttgaatggtacatcaagcctctgtagt 326
>dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-F08, full
insert sequence
Length = 1290
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 732 gggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttggtg 791
|||||||| |||||||| |||||| || || ||| |||||| | |||||||||||||
Sbjct: 553 gggttgcaccggccgccgtcgtcggacgggagcgcgttgttcggcgggcagaagttggtg 494
Query: 792 gccgtgacgac 802
|||||||||||
Sbjct: 493 gccgtgacgac 483
>dbj|AK070133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046O16, full
insert sequence
Length = 1071
Score = 52.0 bits (26), Expect = 7e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgccatcccgtac 923
||||||| ||||||| ||||||||||||||||||||| || ||||| | ||||||||
Sbjct: 326 ccgcacgacgcgccgtcgtcgaacagcgccgtgctcagcgccgccgtccgcgtcccgtac 267
Query: 924 cc 925
||
Sbjct: 266 cc 265
>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
sequence
Length = 143507
Score = 52.0 bits (26), Expect = 7e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgccatcccgtac 923
||||||| ||||||| ||||||||||||||||||||| || ||||| | ||||||||
Sbjct: 85396 ccgcacgacgcgccgtcgtcgaacagcgccgtgctcagcgccgccgtccgcgtcccgtac 85337
Query: 924 cc 925
||
Sbjct: 85336 cc 85335
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,680,179
Number of Sequences: 438736
Number of extensions: 1680179
Number of successful extensions: 14094
Number of sequences better than 0.5: 89
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12968
Number of HSP's gapped (non-prelim): 1105
length of query: 1171
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1150
effective length of database: 2,791,206,460
effective search space: 3209887429000
effective search space used: 3209887429000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)