BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.2
(1041 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB679715.1|CB679715 OSJNEf03J03.f OSJNEf Oryza sativa (j... 214 7e-053
gb|CB685153.1|CB685153 OSJNEf15F10.f OSJNEf Oryza sativa (j... 214 7e-053
dbj|AK061366.1| Oryza sativa (japonica cultivar-group) cDNA... 214 7e-053
dbj|AK121441.1| Oryza sativa (japonica cultivar-group) cDNA... 214 7e-053
ref|NM_190765.1| Oryza sativa (japonica cultivar-group), p... 214 7e-053
gb|CA999153.1|CA999153 S234N_C11 Rice cold stress germinati... 163 2e-037
gb|CB653924.1|CB653924 OSJNEc05G06.r OSJNEc Oryza sativa (j... 163 2e-037
dbj|AK059283.1| Oryza sativa (japonica cultivar-group) cDNA... 163 2e-037
dbj|AK121867.1| Oryza sativa (japonica cultivar-group) cDNA... 163 2e-037
ref|XM_475304.1| Oryza sativa (japonica cultivar-group), p... 163 2e-037
gb|CF323560.1|CF323560 HDN--04-C19.g1 OsHDAC1-overexpressin... 149 4e-033
gb|C99208.1|C99208 C99208 Rice panicle at ripening stage Or... 135 5e-029
gb|AACV01002753.1| Oryza sativa (japonica cultivar-group) c... 133 2e-028
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 133 2e-028
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 133 2e-028
dbj|AP003286.3| Oryza sativa (japonica cultivar-group) geno... 133 2e-028
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 133 2e-028
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 133 2e-028
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 133 2e-028
gb|CF326437.1|CF326437 JMT1--06-A24.g1 AtJMT-overexpressing... 90 3e-015
gb|AACV01012264.1| Oryza sativa (japonica cultivar-group) c... 90 3e-015
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 90 3e-015
gb|AC105318.4| Oryza sativa (japonica cultivar-group) chrom... 90 3e-015
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 90 3e-015
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 90 3e-015
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 90 3e-015
gb|C97538.1|C97538 C97538 Rice callus Oryza sativa (japonic... 76 4e-011
gb|AU077950.1|AU077950 AU077950 Rice callus Oryza sativa (j... 74 2e-010
gb|CF309705.1|CF309705 ABF--03-P22.g1 ABF3-overexpressing t... 70 3e-009
gb|AU094034.1|AU094034 AU094034 Rice panicle at flowering s... 64 2e-007
gb|CB653923.1|CB653923 OSJNEc05G06.f OSJNEc Oryza sativa (j... 60 3e-006
gb|C97539.1|C97539 C97539 Rice callus Oryza sativa (japonic... 52 6e-004
gb|AU030027.1|AU030027 AU030027 Rice cDNA from immature lea... 48 0.010
gb|AU030028.1|AU030028 AU030028 Rice cDNA from immature lea... 48 0.010
dbj|AK071119.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.010
gb|AACV01003836.1| Oryza sativa (japonica cultivar-group) c... 48 0.010
dbj|AP005428.2| Oryza sativa (japonica cultivar-group) geno... 48 0.010
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 48 0.010
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 48 0.010
dbj|AK059220.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
gb|AC108499.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|AACV01012610.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
ref|NT_107218.1| Oryza sativa (japonica cultivar-group) 44 0.15
>gb|CB679715.1|CB679715 OSJNEf03J03.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03J03 5', mRNA sequence
Length = 807
Score = 214 bits (108), Expect = 7e-053
Identities = 169/193 (87%)
Strand = Plus / Plus
Query: 7 ataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtc 66
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 449 ataattcgtcatccacgtattggtgaatatgcatttggatttataacatcaactgttgtt 508
Query: 67 cttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctg 126
|||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 509 cttcagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctt 568
Query: 127 tacatcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatctatt 186
||||| ||||| ||||||||||||||||| ||||||| |||||||| |||
Sbjct: 569 tacattggtgacatatttctggtgaactctgaggagataataagaccaaatttatccatt 628
Query: 187 cgagaaggaatcg 199
|||||||||||||
Sbjct: 629 cgagaaggaatcg 641
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 641 gaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccacc 700
Query: 456 ccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 701 ccaaggaagagccagaatatccgtctaaatagaat 735
>gb|CB685153.1|CB685153 OSJNEf15F10.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15F10 5', mRNA sequence
Length = 758
Score = 214 bits (108), Expect = 7e-053
Identities = 169/193 (87%)
Strand = Plus / Plus
Query: 7 ataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtc 66
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 443 ataattcgtcatccacgtattggtgaatatgcatttggatttataacatcaactgttgtt 502
Query: 67 cttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctg 126
|||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 503 cttcagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctt 562
Query: 127 tacatcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatctatt 186
||||| ||||| ||||||||||||||||| ||||||| |||||||| |||
Sbjct: 563 tacattggtgacatatttctggtgaactctgaggagataataagaccaaatttatccatt 622
Query: 187 cgagaaggaatcg 199
|||||||||||||
Sbjct: 623 cgagaaggaatcg 635
Score = 61.9 bits (31), Expect = 6e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 635 gaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccacc 694
Query: 456 ccacggaaaagccagaacattcgtctaaatagaat 490
|| |||| |||||||| || ||||||||||||||
Sbjct: 695 cccaggaagagccagaatatccgtctaaatagaat 729
>dbj|AK061366.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D06, full
insert sequence
Length = 1271
Score = 214 bits (108), Expect = 7e-053
Identities = 169/193 (87%)
Strand = Plus / Plus
Query: 7 ataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtc 66
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 608 ataattcgtcatccacgtattggtgaatatgcatttggatttataacatcaactgttgtt 667
Query: 67 cttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctg 126
|||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 668 cttcagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctt 727
Query: 127 tacatcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatctatt 186
||||| ||||| ||||||||||||||||| ||||||| |||||||| |||
Sbjct: 728 tacattggtgacatatttctggtgaactctgaggagataataagaccaaatttatccatt 787
Query: 187 cgagaaggaatcg 199
|||||||||||||
Sbjct: 788 cgagaaggaatcg 800
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 800 gaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccacc 859
Query: 456 ccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 860 ccaaggaagagccagaatatccgtctaaatagaat 894
>dbj|AK121441.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140N15, full
insert sequence
Length = 2362
Score = 214 bits (108), Expect = 7e-053
Identities = 169/193 (87%)
Strand = Plus / Plus
Query: 7 ataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtc 66
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 1692 ataattcgtcatccacgtattggtgaatatgcatttggatttataacatcaactgttgtt 1751
Query: 67 cttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctg 126
|||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 1752 cttcagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctt 1811
Query: 127 tacatcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatctatt 186
||||| ||||| ||||||||||||||||| ||||||| |||||||| |||
Sbjct: 1812 tacattggtgacatatttctggtgaactctggggagataataagaccaaatttatccatt 1871
Query: 187 cgagaaggaatcg 199
|||||||||||||
Sbjct: 1872 cgagaaggaatcg 1884
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 1884 gaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccacc 1943
Query: 456 ccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 1944 ccaaggaagagccagaatatccgtctaaatagaat 1978
>ref|NM_190765.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 780
Score = 214 bits (108), Expect = 7e-053
Identities = 169/193 (87%)
Strand = Plus / Plus
Query: 7 ataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtc 66
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 484 ataattcgtcatccacgtattggtgaatatgcatttggatttataacatcaactgttgtt 543
Query: 67 cttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctg 126
|||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 544 cttcagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctt 603
Query: 127 tacatcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatctatt 186
||||| ||||| ||||||||||||||||| ||||||| |||||||| |||
Sbjct: 604 tacattggtgacatatttctggtgaactctgaggagataataagaccaaatttatccatt 663
Query: 187 cgagaaggaatcg 199
|||||||||||||
Sbjct: 664 cgagaaggaatcg 676
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 676 gaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccacc 735
Query: 456 ccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 736 ccaaggaagagccagaatatccgtctaaatagaat 770
>gb|CA999153.1|CA999153 S234N_C11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 676
Score = 163 bits (82), Expect = 2e-037
Identities = 121/134 (90%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 219 gcaataattagtcatccccgtattggtgaatatgcatttggattcataacatcgacgatg 278
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 279 atccttcagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcat 338
Query: 124 ctgtacatcggtga 137
|| || ||||||||
Sbjct: 339 ctatatatcggtga 352
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 395 agaaataattgtttcaggagggatgaccatgcctcaggtgattgca 440
|||||| |||||||| ||||| ||||||||||| || |||||||||
Sbjct: 413 agaaatcattgtttctggaggaatgaccatgccgcatgtgattgca 458
>gb|CB653924.1|CB653924 OSJNEc05G06.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05G06 3', mRNA sequence
Length = 788
Score = 163 bits (82), Expect = 2e-037
Identities = 121/134 (90%)
Strand = Plus / Minus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 550 gcaataattagtcatccccgtattggtgaatatgcatttggattcataacatcgacgatg 491
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 490 atccttcagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcat 431
Query: 124 ctgtacatcggtga 137
|| || ||||||||
Sbjct: 430 ctatatatcggtga 417
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 395 agaaataattgtttcaggagggatgaccatgcctcaggtgattgca 440
|||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 356 agaaatcattgtttctggaggaatgaccatgccgcaggtgattgca 311
>dbj|AK059283.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D06, full
insert sequence
Length = 1253
Score = 163 bits (82), Expect = 2e-037
Identities = 121/134 (90%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 672 gcaataattagtcatccccgtattggtgaatatgcatttggattcataacatcgacgatg 731
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 732 atccttcagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcat 791
Query: 124 ctgtacatcggtga 137
|| || ||||||||
Sbjct: 792 ctatatatcggtga 805
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 395 agaaataattgtttcaggagggatgaccatgcctcaggtgattgca 440
|||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 866 agaaatcattgtttctggaggaatgaccatgccgcaggtgattgca 911
>dbj|AK121867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103I02, full
insert sequence
Length = 1424
Score = 163 bits (82), Expect = 2e-037
Identities = 121/134 (90%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 852 gcaataattagtcatccccgtattggtgaatatgcatttggattcataacatcgacgatg 911
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 912 atccttcagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcat 971
Query: 124 ctgtacatcggtga 137
|| || ||||||||
Sbjct: 972 ctatatatcggtga 985
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 395 agaaataattgtttcaggagggatgaccatgcctcaggtgattgca 440
|||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 1046 agaaatcattgtttctggaggaatgaccatgccgcaggtgattgca 1091
>ref|XM_475304.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 783
Score = 163 bits (82), Expect = 2e-037
Identities = 121/134 (90%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 481 gcaataattagtcatccccgtattggtgaatatgcatttggattcataacatcgacgatg 540
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 541 atccttcagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcat 600
Query: 124 ctgtacatcggtga 137
|| || ||||||||
Sbjct: 601 ctatatatcggtga 614
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 395 agaaataattgtttcaggagggatgaccatgcctcaggtgattgca 440
|||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 675 agaaatcattgtttctggaggaatgaccatgccgcaggtgattgca 720
>gb|CF323560.1|CF323560 HDN--04-C19.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-C19, mRNA sequence
Length = 512
Score = 149 bits (75), Expect = 4e-033
Identities = 121/135 (89%), Gaps = 1/135 (0%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 357 gcaataattagtcatccccgtattggtgaatatgcatttggattcataacatcgacgatg 416
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgc-caacaaatca 122
||||||||||||||||||| || ||||||||||| ||||| ||||||| |||| |||||
Sbjct: 417 atccttcagactgacaaaggtgatgaagaactgtgcagtgtatatgtgcncaaccaatca 476
Query: 123 tctgtacatcggtga 137
||| || ||||||||
Sbjct: 477 tctatatatcggtga 491
>gb|C99208.1|C99208 C99208 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10436_8Z, mRNA sequence
Length = 645
Score = 135 bits (68), Expect = 5e-029
Identities = 121/136 (88%), Gaps = 2/136 (1%)
Strand = Plus / Plus
Query: 4 gcaataattcgtc-atccacgaattggtgaatatgcatttggattcataacatcaacggt 62
||||||||| ||| |||| || |||||||||||||||||||||||||||||||| ||| |
Sbjct: 91 gcaataattagtccatccccgtattggtgaatatgcatttggattcataacatcgacgat 150
Query: 63 ggtccttcagactgacaaaggcgacgaagaactgtg-tagtgtgtatgtgccaacaaatc 121
| ||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||
Sbjct: 151 gatccttcagactgacaaaggtgatgaagaactgtgccagtgtatatgtgccaaccaatc 210
Query: 122 atctgtacatcggtga 137
|||| || ||||||||
Sbjct: 211 atctatatatcggtga 226
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 402 attgtttcaggagggatgaccatgcctcaggtgattgc 439
|||||||| ||||| ||||||||||| |||||||||||
Sbjct: 295 attgtttctggaggaatgaccatgccgcaggtgattgc 332
>gb|AACV01002753.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002753, whole
genome shotgun sequence
Length = 18525
Score = 133 bits (67), Expect = 2e-028
Identities = 113/132 (85%)
Strand = Plus / Minus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct: 13778 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 13719
Query: 130 atcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatctattcga 189
|| ||||| ||||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 13718 attggtgacatatttctggtgaactctgaggagataataagaccaaatttatccattcga 13659
Query: 190 gaaggaatcggt 201
||||||||||||
Sbjct: 13658 gaaggaatcggt 13647
Score = 91.7 bits (46), Expect = 7e-016
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 7 ataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtc 66
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 13998 ataattcgtcatccacgtattggtgaatatgcatttggatttataacatcaactgttgtt 13939
Query: 67 cttcag 72
||||||
Sbjct: 13938 cttcag 13933
Score = 73.8 bits (37), Expect = 2e-010
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagccca 453
|||||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 13459 cagaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaaccca 13400
Query: 454 tgccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 13399 ccccaaggaagagccagaatatccgtctaaatagaat 13363
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 133 bits (67), Expect = 2e-028
Identities = 113/132 (85%)
Strand = Plus / Minus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct: 37659692 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 37659633
Query: 130 atcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatctattcga 189
|| ||||| ||||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 37659632 attggtgacatatttctggtgaactctgaggagataataagaccaaatttatccattcga 37659573
Query: 190 gaaggaatcggt 201
||||||||||||
Sbjct: 37659572 gaaggaatcggt 37659561
Score = 91.7 bits (46), Expect = 7e-016
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 7 ataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtc 66
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 37659912 ataattcgtcatccacgtattggtgaatatgcatttggatttataacatcaactgttgtt 37659853
Query: 67 cttcag 72
||||||
Sbjct: 37659852 cttcag 37659847
Score = 73.8 bits (37), Expect = 2e-010
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagccca 453
|||||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 37659373 cagaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaaccca 37659314
Query: 454 tgccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 37659313 ccccaaggaagagccagaatatccgtctaaatagaat 37659277
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 133 bits (67), Expect = 2e-028
Identities = 113/132 (85%)
Strand = Plus / Minus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct: 12107075 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 12107016
Query: 130 atcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatctattcga 189
|| ||||| ||||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 12107015 attggtgacatatttctggtgaactctgaggagataataagaccaaatttatccattcga 12106956
Query: 190 gaaggaatcggt 201
||||||||||||
Sbjct: 12106955 gaaggaatcggt 12106944
Score = 91.7 bits (46), Expect = 7e-016
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 7 ataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtc 66
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 12107295 ataattcgtcatccacgtattggtgaatatgcatttggatttataacatcaactgttgtt 12107236
Query: 67 cttcag 72
||||||
Sbjct: 12107235 cttcag 12107230
Score = 73.8 bits (37), Expect = 2e-010
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagccca 453
|||||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 12106756 cagaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaaccca 12106697
Query: 454 tgccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 12106696 ccccaaggaagagccagaatatccgtctaaatagaat 12106660
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0677H08
Length = 178830
Score = 133 bits (67), Expect = 2e-028
Identities = 113/132 (85%)
Strand = Plus / Minus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct: 39496 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 39437
Query: 130 atcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatctattcga 189
|| ||||| ||||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 39436 attggtgacatatttctggtgaactctgaggagataataagaccaaatttatccattcga 39377
Query: 190 gaaggaatcggt 201
||||||||||||
Sbjct: 39376 gaaggaatcggt 39365
Score = 91.7 bits (46), Expect = 7e-016
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 7 ataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtc 66
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 39716 ataattcgtcatccacgtattggtgaatatgcatttggatttataacatcaactgttgtt 39657
Query: 67 cttcag 72
||||||
Sbjct: 39656 cttcag 39651
Score = 73.8 bits (37), Expect = 2e-010
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagccca 453
|||||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 39177 cagaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaaccca 39118
Query: 454 tgccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 39117 ccccaaggaagagccagaatatccgtctaaatagaat 39081
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 133 bits (67), Expect = 2e-028
Identities = 113/132 (85%)
Strand = Plus / Minus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct: 11834525 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 11834466
Query: 130 atcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatctattcga 189
|| ||||| ||||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 11834465 attggtgacatatttctggtgaactctgaggagataataagaccaaatttatccattcga 11834406
Query: 190 gaaggaatcggt 201
||||||||||||
Sbjct: 11834405 gaaggaatcggt 11834394
Score = 91.7 bits (46), Expect = 7e-016
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 7 ataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtc 66
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 11834745 ataattcgtcatccacgtattggtgaatatgcatttggatttataacatcaactgttgtt 11834686
Query: 67 cttcag 72
||||||
Sbjct: 11834685 cttcag 11834680
Score = 73.8 bits (37), Expect = 2e-010
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagccca 453
|||||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 11834206 cagaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaaccca 11834147
Query: 454 tgccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 11834146 ccccaaggaagagccagaatatccgtctaaatagaat 11834110
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 133 bits (67), Expect = 2e-028
Identities = 113/132 (85%)
Strand = Plus / Minus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct: 37036246 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 37036187
Query: 130 atcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatctattcga 189
|| ||||| ||||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 37036186 attggtgacatatttctggtgaactctgaggagataataagaccaaatttatccattcga 37036127
Query: 190 gaaggaatcggt 201
||||||||||||
Sbjct: 37036126 gaaggaatcggt 37036115
Score = 91.7 bits (46), Expect = 7e-016
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 7 ataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtc 66
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 37036466 ataattcgtcatccacgtattggtgaatatgcatttggatttataacatcaactgttgtt 37036407
Query: 67 cttcag 72
||||||
Sbjct: 37036406 cttcag 37036401
Score = 73.8 bits (37), Expect = 2e-010
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagccca 453
|||||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 37035927 cagaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaaccca 37035868
Query: 454 tgccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 37035867 ccccaaggaagagccagaatatccgtctaaatagaat 37035831
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 133 bits (67), Expect = 2e-028
Identities = 113/132 (85%)
Strand = Plus / Minus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct: 37579022 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 37578963
Query: 130 atcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatctattcga 189
|| ||||| ||||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 37578962 attggtgacatatttctggtgaactctgaggagataataagaccaaatttatccattcga 37578903
Query: 190 gaaggaatcggt 201
||||||||||||
Sbjct: 37578902 gaaggaatcggt 37578891
Score = 91.7 bits (46), Expect = 7e-016
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 7 ataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtc 66
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 37579242 ataattcgtcatccacgtattggtgaatatgcatttggatttataacatcaactgttgtt 37579183
Query: 67 cttcag 72
||||||
Sbjct: 37579182 cttcag 37579177
Score = 73.8 bits (37), Expect = 2e-010
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagccca 453
|||||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 37578703 cagaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaaccca 37578644
Query: 454 tgccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 37578643 ccccaaggaagagccagaatatccgtctaaatagaat 37578607
>gb|CF326437.1|CF326437 JMT1--06-A24.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--06-A24, mRNA sequence
Length = 696
Score = 89.7 bits (45), Expect = 3e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 35 gcaataattagtcatccccgtattggtgaatatgcatttggattcataacatcgacgatg 94
Query: 64 gtccttcag 72
||||||||
Sbjct: 95 atccttcag 103
>gb|AACV01012264.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012264, whole
genome shotgun sequence
Length = 25704
Score = 89.7 bits (45), Expect = 3e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 6010 gcaataattagtcatccccgtattggtgaatatgcatttggattcataacatcgacgatg 6069
Query: 64 gtccttcag 72
||||||||
Sbjct: 6070 atccttcag 6078
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
|||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 6715 cagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcatctatat 6774
Query: 130 atcggtga 137
||||||||
Sbjct: 6775 atcggtga 6782
Score = 61.9 bits (31), Expect = 6e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgca 440
||||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 6970 cagaaatcattgtttctggaggaatgaccatgccgcaggtgattgca 7016
>ref|NT_107212.1| Oryza sativa (japonica cultivar-group)
Length = 2712182
Score = 89.7 bits (45), Expect = 3e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 2573989 gcaataattagtcatccccgtattggtgaatatgcatttggattcataacatcgacgatg 2574048
Query: 64 gtccttcag 72
||||||||
Sbjct: 2574049 atccttcag 2574057
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
|||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 2574694 cagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcatctatat 2574753
Query: 130 atcggtga 137
||||||||
Sbjct: 2574754 atcggtga 2574761
Score = 61.9 bits (31), Expect = 6e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgca 440
||||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 2574949 cagaaatcattgtttctggaggaatgaccatgccgcaggtgattgca 2574995
>gb|AC105318.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_F05,
complete sequence
Length = 109126
Score = 89.7 bits (45), Expect = 3e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 55230 gcaataattagtcatccccgtattggtgaatatgcatttggattcataacatcgacgatg 55289
Query: 64 gtccttcag 72
||||||||
Sbjct: 55290 atccttcag 55298
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
|||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 55935 cagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcatctatat 55994
Query: 130 atcggtga 137
||||||||
Sbjct: 55995 atcggtga 56002
Score = 61.9 bits (31), Expect = 6e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgca 440
||||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 56190 cagaaatcattgtttctggaggaatgaccatgccgcaggtgattgca 56236
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 89.7 bits (45), Expect = 3e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 3605904 gcaataattagtcatccccgtattggtgaatatgcatttggattcataacatcgacgatg 3605963
Query: 64 gtccttcag 72
||||||||
Sbjct: 3605964 atccttcag 3605972
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
|||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 3606609 cagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcatctatat 3606668
Query: 130 atcggtga 137
||||||||
Sbjct: 3606669 atcggtga 3606676
Score = 61.9 bits (31), Expect = 6e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgca 440
||||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 3606864 cagaaatcattgtttctggaggaatgaccatgccgcaggtgattgca 3606910
Score = 44.1 bits (22), Expect = 0.15
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 16 catccacgaattggtgaatatgcatttggattcataacatca 57
||||| || ||||| |||||||||||||| ||||| ||||||
Sbjct: 8459642 catcctcgtattggagaatatgcatttggtttcattacatca 8459601
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 89.7 bits (45), Expect = 3e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 20906217 gcaataattagtcatccccgtattggtgaatatgcatttggattcataacatcgacgatg 20906276
Query: 64 gtccttcag 72
||||||||
Sbjct: 20906277 atccttcag 20906285
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
|||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 20906922 cagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcatctatat 20906981
Query: 130 atcggtga 137
||||||||
Sbjct: 20906982 atcggtga 20906989
Score = 61.9 bits (31), Expect = 6e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgca 440
||||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 20907177 cagaaatcattgtttctggaggaatgaccatgccgcaggtgattgca 20907223
Score = 44.1 bits (22), Expect = 0.15
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 16 catccacgaattggtgaatatgcatttggattcataacatca 57
||||| || ||||| |||||||||||||| ||||| ||||||
Sbjct: 25759955 catcctcgtattggagaatatgcatttggtttcattacatca 25759914
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 89.7 bits (45), Expect = 3e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 21268624 gcaataattagtcatccccgtattggtgaatatgcatttggattcataacatcgacgatg 21268683
Query: 64 gtccttcag 72
||||||||
Sbjct: 21268684 atccttcag 21268692
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
|||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 21269329 cagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcatctatat 21269388
Query: 130 atcggtga 137
||||||||
Sbjct: 21269389 atcggtga 21269396
Score = 61.9 bits (31), Expect = 6e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgca 440
||||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 21269584 cagaaatcattgtttctggaggaatgaccatgccgcaggtgattgca 21269630
Score = 44.1 bits (22), Expect = 0.15
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 16 catccacgaattggtgaatatgcatttggattcataacatca 57
||||| || ||||| |||||||||||||| ||||| ||||||
Sbjct: 26073602 catcctcgtattggagaatatgcatttggtttcattacatca 26073561
>gb|C97538.1|C97538 C97538 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60342_7A, mRNA sequence
Length = 709
Score = 75.8 bits (38), Expect = 4e-011
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||| ||||||| || |||| |||||||||||||||||||| |||||| | | ||
Sbjct: 616 gcaataattagtcatccccgtattg-tgaatatgcatttggattcanaacatcgatgatg 674
Query: 64 gtccttcagactgacaaagg 83
||||| |||||||||||||
Sbjct: 675 atccttnagactgacaaagg 694
>gb|AU077950.1|AU077950 AU077950 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12951_8Z, mRNA sequence
Length = 718
Score = 73.8 bits (37), Expect = 2e-010
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 110 tgccaacaaatcatctgtacatcggtgatatatttctggtgaactcnnnnnnnnnnntaa 169
|||||||||||||||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 96 tgccaacaaatcatctttacattggtgacatatttctggtgaactctgaggagataataa 155
Query: 170 gacctaatttatctattcgagaaggaatcg 199
|||| |||||||| ||||||||||||||||
Sbjct: 156 gaccaaatttatccattcgagaaggaatcg 185
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 185 gaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccacc 244
Query: 456 ccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 245 ccaaggaagagccagaatatccgtctaaatagaat 279
>gb|CF309705.1|CF309705 ABF--03-P22.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-P22, mRNA sequence
Length = 551
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||
Sbjct: 509 gaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccacc 450
Query: 456 ccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 449 ccaaggaagagccagaatatccgtctaaatagaat 415
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 167 taagacctaatttatctattcgagaaggaatcg 199
||||||| |||||||| ||||||||||||||||
Sbjct: 541 taagaccaaatttatccattcgagaaggaatcg 509
>gb|AU094034.1|AU094034 AU094034 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1952, mRNA sequence
Length = 609
Score = 63.9 bits (32), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||| ||||| ||||| || || |||||||| || || || || ||||
Sbjct: 60 gaaataattgtttctggaggaatgactatnccacaggtgatcgcgtcccttgaacccacc 119
Query: 456 ccacggaaaagccagaacattcgtctaaatagaat 490
||| |||| |||||||| || ||||||||||||||
Sbjct: 120 ccaaggaagagccagaatatccgtctaaatagaat 154
>gb|CB653923.1|CB653923 OSJNEc05G06.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05G06 5', mRNA sequence
Length = 646
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttgga 45
||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 605 gcaataattagtcatccccgtattggtgaatatgcatttgga 646
>gb|C97539.1|C97539 C97539 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60342_8Z, mRNA sequence
Length = 500
Score = 52.0 bits (26), Expect = 6e-004
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 395 agaaataattgtttcaggagggatgaccatgcctcaggtgattgca 440
|||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 106 agaaatcattgtttctggagg-atgaccatgccgcaggtgattgca 150
>gb|AU030027.1|AU030027 AU030027 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50520_1A, mRNA sequence
Length = 366
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 gaattggtgaatatgcatttggattcat 50
||||||| ||||||||||||||||||||
Sbjct: 67 gaattggcgaatatgcatttggattcat 94
>gb|AU030028.1|AU030028 AU030028 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50520_2Z, mRNA sequence
Length = 707
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 gaattggtgaatatgcatttggattcat 50
||||||| ||||||||||||||||||||
Sbjct: 127 gaattggcgaatatgcatttggattcat 154
>dbj|AK071119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082M07, full
insert sequence
Length = 1309
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 gaattggtgaatatgcatttggattcat 50
||||||| ||||||||||||||||||||
Sbjct: 649 gaattggcgaatatgcatttggattcat 676
>gb|AACV01003836.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003836, whole
genome shotgun sequence
Length = 32497
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 gaattggtgaatatgcatttggattcat 50
||||||| ||||||||||||||||||||
Sbjct: 24595 gaattggcgaatatgcatttggattcat 24622
>dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0693E08
Length = 157969
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 gaattggtgaatatgcatttggattcat 50
||||||| ||||||||||||||||||||
Sbjct: 83435 gaattggcgaatatgcatttggattcat 83408
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 gaattggtgaatatgcatttggattcat 50
||||||| ||||||||||||||||||||
Sbjct: 3649599 gaattggcgaatatgcatttggattcat 3649572
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 gaattggtgaatatgcatttggattcat 50
||||||| ||||||||||||||||||||
Sbjct: 9679265 gaattggcgaatatgcatttggattcat 9679238
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 gaattggtgaatatgcatttggattcat 50
||||||| ||||||||||||||||||||
Sbjct: 9679265 gaattggcgaatatgcatttggattcat 9679238
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 gaattggtgaatatgcatttggattcat 50
||||||| ||||||||||||||||||||
Sbjct: 9619217 gaattggcgaatatgcatttggattcat 9619190
>dbj|AK059220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D01, full
insert sequence
Length = 1170
Score = 44.1 bits (22), Expect = 0.15
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 16 catccacgaattggtgaatatgcatttggattcataacatca 57
||||| || ||||| |||||||||||||| ||||| ||||||
Sbjct: 662 catcctcgtattggagaatatgcatttggtttcattacatca 703
>gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1187_E11,
complete sequence
Length = 133352
Score = 44.1 bits (22), Expect = 0.15
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 16 catccacgaattggtgaatatgcatttggattcataacatca 57
||||| || ||||| |||||||||||||| ||||| ||||||
Sbjct: 98363 catcctcgtattggagaatatgcatttggtttcattacatca 98322
>gb|AACV01012610.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012610, whole
genome shotgun sequence
Length = 16739
Score = 44.1 bits (22), Expect = 0.15
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 16 catccacgaattggtgaatatgcatttggattcataacatca 57
||||| || ||||| |||||||||||||| ||||| ||||||
Sbjct: 11091 catcctcgtattggagaatatgcatttggtttcattacatca 11050
>ref|NT_107218.1| Oryza sativa (japonica cultivar-group)
Length = 369997
Score = 44.1 bits (22), Expect = 0.15
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 16 catccacgaattggtgaatatgcatttggattcataacatca 57
||||| || ||||| |||||||||||||| ||||| ||||||
Sbjct: 98363 catcctcgtattggagaatatgcatttggtttcattacatca 98322
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,094,572
Number of Sequences: 438736
Number of extensions: 2094572
Number of successful extensions: 17758
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17148
Number of HSP's gapped (non-prelim): 608
length of query: 1041
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1020
effective length of database: 2,791,206,460
effective search space: 2847030589200
effective search space used: 2847030589200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)