BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419355.2.1
(1174 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK058626.1| Oryza sativa (japonica cultivar-group) cDNA... 850 0.0
dbj|AK102585.1| Oryza sativa (japonica cultivar-group) cDNA... 850 0.0
ref|NM_191297.1| Oryza sativa (japonica cultivar-group), p... 850 0.0
dbj|AB110177.1| Oryza sativa (japonica cultivar-group) mRNA... 850 0.0
dbj|AK105474.1| Oryza sativa (japonica cultivar-group) cDNA... 842 0.0
gb|AU032108.1|AU032108 AU032108 Rice root Oryza sativa (jap... 369 2e-099
gb|AU095526.1|AU095526 AU095526 Rice root Oryza sativa (jap... 341 5e-091
gb|BP184575.1|BP184575 BP184575 pNS rice panicle cDNA, flow... 311 5e-082
dbj|AK065017.1| Oryza sativa (japonica cultivar-group) cDNA... 281 4e-073
dbj|AK069899.1| Oryza sativa (japonica cultivar-group) cDNA... 281 4e-073
ref|NM_191983.1| Oryza sativa (japonica cultivar-group), p... 264 1e-067
gb|AACV01002374.1| Oryza sativa (japonica cultivar-group) c... 228 5e-057
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 228 5e-057
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 228 5e-057
dbj|AP003375.2| Oryza sativa (japonica cultivar-group) geno... 228 5e-057
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 228 5e-057
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 228 5e-057
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 228 5e-057
gb|AACV01002092.1| Oryza sativa (japonica cultivar-group) c... 119 4e-024
dbj|AP003223.3| Oryza sativa (japonica cultivar-group) geno... 119 4e-024
dbj|AP003264.3| Oryza sativa (japonica cultivar-group) geno... 119 4e-024
gb|AU091713.1|AU091713 AU091713 Rice mature leaf Oryza sati... 92 8e-016
dbj|AK062045.1| Oryza sativa (japonica cultivar-group) cDNA... 82 8e-013
gb|CB640836.1|CB640836 OSJNEa16J19.f OSJNEa Oryza sativa (j... 62 7e-007
dbj|AK066938.1| Oryza sativa (japonica cultivar-group) cDNA... 62 7e-007
gb|AC148339.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
gb|AACV01006579.1| Oryza sativa (japonica cultivar-group) c... 62 7e-007
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 62 7e-007
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 62 7e-007
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
>dbj|AK058626.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C03, full
insert sequence
Length = 1393
Score = 850 bits (429), Expect = 0.0
Identities = 678/761 (89%)
Strand = Plus / Plus
Query: 6 aaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccccagga 65
|||||||||||||||||| | || |||||||||||||| ||||||||||| |||||||||
Sbjct: 471 aaatacttcactggtctcttgtcaccatggaaaggcattttactttttggtcccccagga 530
Query: 66 acaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaac 125
|| || ||||||||||||||||| || || ||||||||||| ||||| || |||||||||
Sbjct: 531 actgggaagacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaac 590
Query: 126 atttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtcaaagtt 185
|||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct: 591 atttcagcatcatcaattgttagcaaatggcgtggggattcagagaagctagttaaagtt 650
Query: 186 ctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgct 245
||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 651 ctgtttgagcttgctagacatcatgcaccatcgacaatatttcttgatgaaattgatgct 710
Query: 246 atcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagact 305
|| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 711 attatcagccaacgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagact 770
Query: 306 gagctacttattcagatggatggtttgacaaagacaaacgacttggtatttgtacttgca 365
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 771 gagctactcattcagatggatggcttgacaaagacgaacgacttggtatttgtacttgca 830
Query: 366 gctacaaatcttccctgggaattggatgcagccatgctccgccggcttgagaagcggatt 425
|| |||||| | || |||||| |||| ||||| |||||||||||||||||||| ||||||
Sbjct: 831 gcaacaaatttaccttgggaactggacgcagctatgctccgccggcttgagaaacggatt 890
Query: 426 cttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgccagca 485
|| ||||| |||||||| | |||||||||||| || ||||||||||||||| ||||| ||
Sbjct: 891 ctcgtacctcttcctgaggctgaagcaaggcatgctatgtttgaggaacttttgccatca 950
Query: 486 actacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggttactct 545
|||||||||||| |||| | || || || | ||||||| ||||| ||||| ||||||
Sbjct: 951 actacctcaaagctagaggttccatatgatactttagttgagaagactgaagggtactct 1010
Query: 546 ggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtctcatg 605
||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1011 ggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactaagacgtcttatg 1070
Query: 606 tcagttcttgaagccagtgacgagttggttccggaggaagaactgcctgaggttggccct 665
||||||||||||||||| || ||| |||| || ||||||||| |||| |||||||| |||
Sbjct: 1071 tcagttcttgaagccagagatgagctggtgcctgaggaagaattgcccgaggttggtcct 1130
Query: 666 ctgaaacctgatgatattgaacttgcattaaggaacactaggccgtcagcacatctccat 725
|| |||||||| || || ||| |||| || |||||||| |||||||| || |||||||||
Sbjct: 1131 ctcaaacctgaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccat 1190
Query: 726 gcgcatcgctatgagaagttcaaccaggactacggtagcca 766
|| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1191 gcacatcgctatgagaagtttaaccaggattacggaagcca 1231
>dbj|AK102585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098E22, full
insert sequence
Length = 1635
Score = 850 bits (429), Expect = 0.0
Identities = 678/761 (89%)
Strand = Plus / Plus
Query: 6 aaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccccagga 65
|||||||||||||||||| | || |||||||||||||| ||||||||||| |||||||||
Sbjct: 713 aaatacttcactggtctcttgtcaccatggaaaggcattttactttttggtcccccagga 772
Query: 66 acaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaac 125
|| || ||||||||||||||||| || || ||||||||||| ||||| || |||||||||
Sbjct: 773 actgggaagacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaac 832
Query: 126 atttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtcaaagtt 185
|||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct: 833 atttcagcatcatcaattgttagcaaatggcgtggggattcagagaagctagttaaagtt 892
Query: 186 ctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgct 245
||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 893 ctgtttgagcttgctagacatcatgcaccatcgacaatatttcttgatgaaattgatgct 952
Query: 246 atcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagact 305
|| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 953 attatcagccaacgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagact 1012
Query: 306 gagctacttattcagatggatggtttgacaaagacaaacgacttggtatttgtacttgca 365
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1013 gagctactcattcagatggatggcttgacaaagacgaacgacttggtatttgtacttgca 1072
Query: 366 gctacaaatcttccctgggaattggatgcagccatgctccgccggcttgagaagcggatt 425
|| |||||| | || |||||| |||| ||||| |||||||||||||||||||| ||||||
Sbjct: 1073 gcaacaaatttaccttgggaactggacgcagctatgctccgccggcttgagaaacggatt 1132
Query: 426 cttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgccagca 485
|| ||||| |||||||| | |||||||||||| || ||||||||||||||| ||||| ||
Sbjct: 1133 ctcgtacctcttcctgaggctgaagcaaggcatgctatgtttgaggaacttttgccatca 1192
Query: 486 actacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggttactct 545
|||||||||||| |||| | || || || | ||||||| ||||| ||||| ||||||
Sbjct: 1193 actacctcaaagctagaggttccatatgatactttagttgagaagactgaagggtactct 1252
Query: 546 ggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtctcatg 605
||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1253 ggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactaagacgtcttatg 1312
Query: 606 tcagttcttgaagccagtgacgagttggttccggaggaagaactgcctgaggttggccct 665
||||||||||||||||| || ||| |||| || ||||||||| |||| |||||||| |||
Sbjct: 1313 tcagttcttgaagccagagatgagctggtgcctgaggaagaattgcccgaggttggtcct 1372
Query: 666 ctgaaacctgatgatattgaacttgcattaaggaacactaggccgtcagcacatctccat 725
|| |||||||| || || ||| |||| || |||||||| |||||||| || |||||||||
Sbjct: 1373 ctcaaacctgaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccat 1432
Query: 726 gcgcatcgctatgagaagttcaaccaggactacggtagcca 766
|| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1433 gcacatcgctatgagaagtttaaccaggattacggaagcca 1473
>ref|NM_191297.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1287
Score = 850 bits (429), Expect = 0.0
Identities = 678/761 (89%)
Strand = Plus / Plus
Query: 6 aaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccccagga 65
|||||||||||||||||| | || |||||||||||||| ||||||||||| |||||||||
Sbjct: 502 aaatacttcactggtctcttgtcaccatggaaaggcattttactttttggtcccccagga 561
Query: 66 acaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaac 125
|| || ||||||||||||||||| || || ||||||||||| ||||| || |||||||||
Sbjct: 562 actgggaagacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaac 621
Query: 126 atttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtcaaagtt 185
|||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct: 622 atttcagcatcatcaattgttagcaaatggcgtggggattcagagaagctagttaaagtt 681
Query: 186 ctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgct 245
||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 682 ctgtttgagcttgctagacatcatgcaccatcgacaatatttcttgatgaaattgatgct 741
Query: 246 atcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagact 305
|| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 742 attatcagccaacgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagact 801
Query: 306 gagctacttattcagatggatggtttgacaaagacaaacgacttggtatttgtacttgca 365
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 802 gagctactcattcagatggatggcttgacaaagacgaacgacttggtatttgtacttgca 861
Query: 366 gctacaaatcttccctgggaattggatgcagccatgctccgccggcttgagaagcggatt 425
|| |||||| | || |||||| |||| ||||| |||||||||||||||||||| ||||||
Sbjct: 862 gcaacaaatttaccttgggaactggacgcagctatgctccgccggcttgagaaacggatt 921
Query: 426 cttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgccagca 485
|| ||||| |||||||| | |||||||||||| || ||||||||||||||| ||||| ||
Sbjct: 922 ctcgtacctcttcctgaggctgaagcaaggcatgctatgtttgaggaacttttgccatca 981
Query: 486 actacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggttactct 545
|||||||||||| |||| | || || || | ||||||| ||||| ||||| ||||||
Sbjct: 982 actacctcaaagctagaggttccatatgatactttagttgagaagactgaagggtactct 1041
Query: 546 ggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtctcatg 605
||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1042 ggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactaagacgtcttatg 1101
Query: 606 tcagttcttgaagccagtgacgagttggttccggaggaagaactgcctgaggttggccct 665
||||||||||||||||| || ||| |||| || ||||||||| |||| |||||||| |||
Sbjct: 1102 tcagttcttgaagccagagatgagctggtgcctgaggaagaattgcccgaggttggtcct 1161
Query: 666 ctgaaacctgatgatattgaacttgcattaaggaacactaggccgtcagcacatctccat 725
|| |||||||| || || ||| |||| || |||||||| |||||||| || |||||||||
Sbjct: 1162 ctcaaacctgaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccat 1221
Query: 726 gcgcatcgctatgagaagttcaaccaggactacggtagcca 766
|| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1222 gcacatcgctatgagaagtttaaccaggattacggaagcca 1262
>dbj|AB110177.1| Oryza sativa (japonica cultivar-group) mRNA for katanin, complete
cds, clone: 13YPG038
Length = 1375
Score = 850 bits (429), Expect = 0.0
Identities = 678/761 (89%)
Strand = Plus / Plus
Query: 6 aaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccccagga 65
|||||||||||||||||| | || |||||||||||||| ||||||||||| |||||||||
Sbjct: 453 aaatacttcactggtctcttgtcaccatggaaaggcattttactttttggtcccccagga 512
Query: 66 acaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaac 125
|| || ||||||||||||||||| || || ||||||||||| ||||| || |||||||||
Sbjct: 513 actgggaagacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaac 572
Query: 126 atttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtcaaagtt 185
|||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct: 573 atttcagcatcatcaattgttagcaaatggcgtggggattcagagaagctagttaaagtt 632
Query: 186 ctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgct 245
||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 633 ctgtttgagcttgctagacatcatgcaccatcgacaatatttcttgatgaaattgatgct 692
Query: 246 atcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagact 305
|| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 693 attatcagccaacgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagact 752
Query: 306 gagctacttattcagatggatggtttgacaaagacaaacgacttggtatttgtacttgca 365
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 753 gagctactcattcagatggatggcttgacaaagacgaacgacttggtatttgtacttgca 812
Query: 366 gctacaaatcttccctgggaattggatgcagccatgctccgccggcttgagaagcggatt 425
|| |||||| | || |||||| |||| ||||| |||||||||||||||||||| ||||||
Sbjct: 813 gcaacaaatttaccttgggaactggacgcagctatgctccgccggcttgagaaacggatt 872
Query: 426 cttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgccagca 485
|| ||||| |||||||| | |||||||||||| || ||||||||||||||| ||||| ||
Sbjct: 873 ctcgtacctcttcctgaggctgaagcaaggcatgctatgtttgaggaacttttgccatca 932
Query: 486 actacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggttactct 545
|||||||||||| |||| | || || || | ||||||| ||||| ||||| ||||||
Sbjct: 933 actacctcaaagctagaggttccatatgatactttagttgagaagactgaagggtactct 992
Query: 546 ggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtctcatg 605
||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 993 ggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactaagacgtcttatg 1052
Query: 606 tcagttcttgaagccagtgacgagttggttccggaggaagaactgcctgaggttggccct 665
||||||||||||||||| || ||| |||| || ||||||||| |||| |||||||| |||
Sbjct: 1053 tcagttcttgaagccagagatgagctggtgcctgaggaagaattgcccgaggttggtcct 1112
Query: 666 ctgaaacctgatgatattgaacttgcattaaggaacactaggccgtcagcacatctccat 725
|| |||||||| || || ||| |||| || |||||||| |||||||| || |||||||||
Sbjct: 1113 ctcaaacctgaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccat 1172
Query: 726 gcgcatcgctatgagaagttcaaccaggactacggtagcca 766
|| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1173 gcacatcgctatgagaagtttaaccaggattacggaagcca 1213
>dbj|AK105474.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-A04, full
insert sequence
Length = 2096
Score = 842 bits (425), Expect = 0.0
Identities = 677/761 (88%)
Strand = Plus / Plus
Query: 6 aaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccccagga 65
|||||||||||||||||| | || |||||||||||||| ||||||||||| |||||||||
Sbjct: 490 aaatacttcactggtctcttgtcaccatggaaaggcattttactttttggtcccccagga 549
Query: 66 acaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaac 125
|| || ||||||||||||||||| | || ||||||||||| ||||| || |||||||||
Sbjct: 550 actgggaagacaatgctggcaaagtctgttgctactgagtgtaaaactacattcttcaac 609
Query: 126 atttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtcaaagtt 185
|||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct: 610 atttcagcatcatcaattgttagcaaatggcgtggggattcagagaagctagttaaagtt 669
Query: 186 ctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgct 245
||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 670 ctgtttgagcttgctagacatcatgcaccatcgacaatatttcttgatgaaattgatgct 729
Query: 246 atcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagact 305
|| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 730 attatcagccaacgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagact 789
Query: 306 gagctacttattcagatggatggtttgacaaagacaaacgacttggtatttgtacttgca 365
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 790 gagctactcattcagatggatggcttgacaaagacgaacgacttggtatttgtacttgca 849
Query: 366 gctacaaatcttccctgggaattggatgcagccatgctccgccggcttgagaagcggatt 425
|| |||||| | || |||||| |||| ||||| |||||||||||||||||||| ||||||
Sbjct: 850 gcaacaaatttaccttgggaactggacgcagctatgctccgccggcttgagaaacggatt 909
Query: 426 cttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgccagca 485
|| ||||| |||||||| | |||||||||||| || ||||||||||||||| ||||| ||
Sbjct: 910 ctcgtacctcttcctgaggctgaagcaaggcatgctatgtttgaggaacttttgccatca 969
Query: 486 actacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggttactct 545
|||||||||||| |||| | || || || | ||||||| ||||| ||||| ||||||
Sbjct: 970 actacctcaaagctagaggttccatatgatactttagttgagaagactgaagggtactct 1029
Query: 546 ggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtctcatg 605
||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1030 ggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactaagacgtcttatg 1089
Query: 606 tcagttcttgaagccagtgacgagttggttccggaggaagaactgcctgaggttggccct 665
||||||||||||||||| || ||| |||| || ||||||||| |||| |||||||| |||
Sbjct: 1090 tcagttcttgaagccagagatgagctggtgcctgaggaagaattgcccgaggttggtcct 1149
Query: 666 ctgaaacctgatgatattgaacttgcattaaggaacactaggccgtcagcacatctccat 725
|| |||||||| || || ||| |||| || |||||||| |||||||| || |||||||||
Sbjct: 1150 ctcaaacctgaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccat 1209
Query: 726 gcgcatcgctatgagaagttcaaccaggactacggtagcca 766
|| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1210 gcacatcgctatgagaagtttaaccaggattacggaagcca 1250
>gb|AU032108.1|AU032108 AU032108 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3537_1A, mRNA sequence
Length = 416
Score = 369 bits (186), Expect = 2e-099
Identities = 316/357 (88%), Gaps = 2/357 (0%)
Strand = Plus / Plus
Query: 268 ctcgcagtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatggatg 327
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 1 ctcgcagtgagcatgaagctagtcgacgcttgaagactgagctactcattcagatggatg 60
Query: 328 gtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatcttccctgggaat 387
| ||||||||||| |||||||||||||||||||||||||| |||||| | || ||||||
Sbjct: 61 gcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaatttaccttgggaac 120
Query: 388 tggatgcagccatgctccgccggcttgagaagcggattcttgtaccgcttcctgaaggtg 447
|||| ||||| |||||||||||||||||||| |||||||| ||||| |||||||| | ||
Sbjct: 121 tggacgcagctatgctccgccggcttgagaaacggattctcgtacctcttcctgaggctg 180
Query: 448 aagcaaggcaagcgatgtttgaggaacttctgccagcaactacctcaaagttagaaatcc 507
|||||||||| || ||||||||||||||| ||||| |||||||||||||| |||| | |
Sbjct: 181 aagcaaggcatgctatgtttgaggaacttttgccatcaactacctcaaagctagaggttc 240
Query: 508 cgtacgacatactagttgaaaagaccgaa-ggttactctggttcagatattcgtctcgtg 566
| || || | ||||||| ||||| ||| || ||||||||||||||||| ||||| |||
Sbjct: 241 catatgatactttagttgagaagactgaaggggtactctggttcagatatccgtcttgtg 300
Query: 567 tgcaaagaagctgccatgcaaccactgagacgtc-tcatgtcagttcttgaagccag 622
||| |||||||||||||||||||||| ||||||| | ||||||||||||||||||||
Sbjct: 301 tgcnaagaagctgccatgcaaccactaagacgtcttaatgtcagttcttgaagccag 357
>gb|AU095526.1|AU095526 AU095526 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3537, mRNA sequence
Length = 581
Score = 341 bits (172), Expect = 5e-091
Identities = 332/386 (86%)
Strand = Plus / Plus
Query: 381 tgggaattggatgcagccatgctccgccggcttgagaagcggattcttgtaccgcttcct 440
|||||| |||| ||||| ||| ||||||||||||||| |||||||| ||||| ||||||
Sbjct: 19 tgggaactggacgcagctatgtcccgccggcttgagaancggattctcgtacctcttcct 78
Query: 441 gaaggtgaagcaaggcaagcgatgtttgaggaacttctgccagcaactacctcaaagtta 500
|| | |||||||||||| || ||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 79 gaggctgaagcaaggcatgctatgtttgaggaacttttgccatcaactacctcaaagcta 138
Query: 501 gaaatcccgtacgacatactagttgaaaagaccgaaggttactctggttcagatattcgt 560
|| | || || || | ||||||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 139 gaggttccatatgatactttagttgagaagactgaagggtactctggttcagatatccgt 198
Query: 561 ctcgtgtgcaaagaagctgccatgcaaccactgagacgtctcatgtcagttcttgaagcc 620
|| ||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 199 cttgtgtgcaaagaagntgccatgcaaccactaagacgtcttatgtcagttcttgaagcc 258
Query: 621 agtgacgagttggttccggaggaagaactgcctgaggttggccctctgaaacctgatgat 680
|| || ||| |||| || ||||||||| |||| |||||||| ||||| |||||||| ||
Sbjct: 259 agagatgagctggtgcctgaggaagaattgcccgaggttggtcctctcaaacctgaagac 318
Query: 681 attgaacttgcattaaggaacactaggccgtcagcacatctccatgcgcatcgctatgag 740
|| ||| |||| || |||||||| |||||||| || ||||||||||| ||||||||||||
Sbjct: 319 atcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgctatgag 378
Query: 741 aagttcaaccaggactacggtagcca 766
||||| |||||||| ||||| |||||
Sbjct: 379 aagtttaaccaggattacggaagcca 404
>gb|BP184575.1|BP184575 BP184575 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 13YPG038, mRNA
sequence
Length = 693
Score = 311 bits (157), Expect = 5e-082
Identities = 220/241 (91%)
Strand = Plus / Plus
Query: 6 aaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccccagga 65
|||||||||||||||||| | || |||||||||||||| ||||||||||| |||||||||
Sbjct: 453 aaatacttcactggtctcttgtcaccatggaaaggcattttactttttggtcccccagga 512
Query: 66 acaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaac 125
|| || ||||||||||||||||| || || ||||||||||| ||||| || |||||||||
Sbjct: 513 actgggaagacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaac 572
Query: 126 atttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtcaaagtt 185
|||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct: 573 atttcagcatcatcaattgttagcaaatggcgtggggattcagagaagctagttaaagtt 632
Query: 186 ctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgct 245
||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 633 ctgtttgagcttgctagacatcatgcaccatcgacaatatttcttgatgaaattgatgct 692
Query: 246 a 246
|
Sbjct: 693 a 693
>dbj|AK065017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F15, full
insert sequence
Length = 1627
Score = 281 bits (142), Expect = 4e-073
Identities = 334/398 (83%)
Strand = Plus / Plus
Query: 33 tggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaaaagcg 92
|||||||| || || |||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 584 tggaaaggtatattgctttttggtccaccaggaacaggaaagacaatgctagcaaaagct 643
Query: 93 gtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtcagcaaa 152
|| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||
Sbjct: 644 gtggctactgagtgcaaaacaaccttcttcaatatttcagcctcatcaattgtcagtaaa 703
Query: 153 tggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcatgca 212
|||||||| ||||| ||||| || || ||||| | ||||||||||| ||||||||||||
Sbjct: 704 tggcgtggtgattcggagaaactagtgaaagtcttatttgagcttgcaaggcatcatgca 763
Query: 213 ccatccacaatattccttgatgaaatagatgctatcatcagccagcgtggtgaagctcgc 272
|||||||| || || || ||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 764 ccatccaccatttttctcgatgagattgatgctattattagccaacgtggtgaagctcgt 823
Query: 273 agtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatggatggtttg 332
||||| ||||| || ||||| || ||||||||||||||| | || ||||||||||| ||
Sbjct: 824 agtgaacatgaagccagtcggcgattgaagactgagctattaatacagatggatgggtta 883
Query: 333 acaaagacaaacgacttggtatttgtacttgcagctacaaatcttccctgggaattggat 392
|| |||||| | || | || ||||| || || || |||||| | || |||||| |||||
Sbjct: 884 actaagacagatgatctcgtttttgttctagccgccacaaatttgccatgggaactggat 943
Query: 393 gcagccatgctccgccggcttgagaagcggattcttgt 430
||||| ||| | ||||| | ||||| || ||||||||
Sbjct: 944 gcagcaatgttgcgccgtttggagaaacgtattcttgt 981
>dbj|AK069899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035A18, full
insert sequence
Length = 1676
Score = 281 bits (142), Expect = 4e-073
Identities = 334/398 (83%)
Strand = Plus / Plus
Query: 33 tggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaaaagcg 92
|||||||| || || |||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 615 tggaaaggtatattgctttttggtccaccaggaacaggaaagacaatgctagcaaaagct 674
Query: 93 gtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtcagcaaa 152
|| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||
Sbjct: 675 gtggctactgagtgcaaaacaaccttcttcaatatttcagcctcatcaattgtcagtaaa 734
Query: 153 tggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcatgca 212
|||||||| ||||| ||||| || || ||||| | ||||||||||| ||||||||||||
Sbjct: 735 tggcgtggtgattcggagaaactagtgaaagtcttatttgagcttgcaaggcatcatgca 794
Query: 213 ccatccacaatattccttgatgaaatagatgctatcatcagccagcgtggtgaagctcgc 272
|||||||| || || || ||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 795 ccatccaccatttttctcgatgagattgatgctattattagccaacgtggtgaagctcgt 854
Query: 273 agtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatggatggtttg 332
||||| ||||| || ||||| || ||||||||||||||| | || ||||||||||| ||
Sbjct: 855 agtgaacatgaagccagtcggcgattgaagactgagctattaatacagatggatgggtta 914
Query: 333 acaaagacaaacgacttggtatttgtacttgcagctacaaatcttccctgggaattggat 392
|| |||||| | || | || ||||| || || || |||||| | || |||||| |||||
Sbjct: 915 actaagacagatgatctcgtttttgttctagccgccacaaatttgccatgggaactggat 974
Query: 393 gcagccatgctccgccggcttgagaagcggattcttgt 430
||||| ||| | ||||| | ||||| || ||||||||
Sbjct: 975 gcagcaatgttgcgccgtttggagaaacgtattcttgt 1012
>ref|NM_191983.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1236
Score = 264 bits (133), Expect = 1e-067
Identities = 334/400 (83%), Gaps = 2/400 (0%)
Strand = Plus / Plus
Query: 33 tggaaaggcatcttactttttggccccccaggaacaggaaaga--caatgctggcaaaag 90
|||||||| || || |||||||| || |||||||||||||||| ||||||| |||||||
Sbjct: 488 tggaaaggtatattgctttttggtccaccaggaacaggaaagagacaatgctagcaaaag 547
Query: 91 cggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtcagca 150
| || ||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct: 548 ctgtggctactgagtgcaaaacaaccttcttcaatatttcagcctcatcaattgtcagta 607
Query: 151 aatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcatg 210
|||||||||| ||||| ||||| || || ||||| | ||||||||||| ||||||||||
Sbjct: 608 aatggcgtggtgattcggagaaactagtgaaagtcttatttgagcttgcaaggcatcatg 667
Query: 211 caccatccacaatattccttgatgaaatagatgctatcatcagccagcgtggtgaagctc 270
|||||||||| || || || ||||| || |||||||| || ||||| |||||||||||||
Sbjct: 668 caccatccaccatttttctcgatgagattgatgctattattagccaacgtggtgaagctc 727
Query: 271 gcagtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatggatggtt 330
| ||||| ||||| || ||||| || ||||||||||||||| | || ||||||||||| |
Sbjct: 728 gtagtgaacatgaagccagtcggcgattgaagactgagctattaatacagatggatgggt 787
Query: 331 tgacaaagacaaacgacttggtatttgtacttgcagctacaaatcttccctgggaattgg 390
| || |||||| | || | || ||||| || || || |||||| | || |||||| |||
Sbjct: 788 taactaagacagatgatctcgtttttgttctagccgccacaaatttgccatgggaactgg 847
Query: 391 atgcagccatgctccgccggcttgagaagcggattcttgt 430
||||||| ||| | ||||| | ||||| || ||||||||
Sbjct: 848 atgcagcaatgttgcgccgtttggagaaacgtattcttgt 887
>gb|AACV01002374.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002374, whole
genome shotgun sequence
Length = 29985
Score = 228 bits (115), Expect = 5e-057
Identities = 148/159 (93%)
Strand = Plus / Minus
Query: 162 gattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatccaca 221
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 11745 gattcagagaagctagttaaagttctgtttgagcttgctagacatcatgcaccatcgaca 11686
Query: 222 atattccttgatgaaatagatgctatcatcagccagcgtggtgaagctcgcagtgagcat 281
||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 11685 atatttcttgatgaaattgatgctattatcagccaacgtggtgaagctcgcagtgagcat 11626
Query: 282 gaggctagtcgtcgcttgaagactgagctacttattcag 320
|| |||||||| |||||||||||||||||||| ||||||
Sbjct: 11625 gaagctagtcgacgcttgaagactgagctactcattcag 11587
Score = 206 bits (104), Expect = 2e-050
Identities = 194/224 (86%)
Strand = Plus / Minus
Query: 422 gattcttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgcc 481
|||||| ||||| |||||||| | |||||||||||| || ||||||||||||||| ||||
Sbjct: 11110 gattctcgtacctcttcctgaggctgaagcaaggcatgctatgtttgaggaacttttgcc 11051
Query: 482 agcaactacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggtta 541
| |||||||||||||| |||| | || || || | ||||||| ||||| ||||| ||
Sbjct: 11050 atcaactacctcaaagctagaggttccatatgatactttagttgagaagactgaagggta 10991
Query: 542 ctctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtct 601
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 10990 ctctggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactaagacgtct 10931
Query: 602 catgtcagttcttgaagccagtgacgagttggttccggaggaag 645
|||||||||||||||||||| || ||| |||| || |||||||
Sbjct: 10930 tatgtcagttcttgaagccagagatgagctggtgcctgaggaag 10887
Score = 129 bits (65), Expect = 4e-027
Identities = 92/101 (91%)
Strand = Plus / Minus
Query: 318 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 377
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct: 11429 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 11370
Query: 378 ccctgggaattggatgcagccatgctccgccggcttgagaa 418
|| |||||| |||| ||||| ||||||||||||||||||||
Sbjct: 11369 ccttgggaactggacgcagctatgctccgccggcttgagaa 11329
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Minus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||
Sbjct: 12202 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 12143
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
||||||||||||| ||||||||||||||
Sbjct: 12142 catcatcaattgttagcaaatggcgtgg 12115
Score = 109 bits (55), Expect = 3e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 644 agaactgcctgaggttggccctctgaaacctgatgatattgaacttgcattaaggaacac 703
|||| |||| |||||||| ||||| |||||||| || || ||| |||| || ||||||||
Sbjct: 10763 agaattgcccgaggttggtcctctcaaacctgaagacatcgaagttgctttgaggaacac 10704
Query: 704 taggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtag 763
|||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct: 10703 aaggccgtctgcgcatctccatgcacatcgctatgagaagtttaaccaggattacggaag 10644
Query: 764 cca 766
|||
Sbjct: 10643 cca 10641
Score = 79.8 bits (40), Expect = 3e-012
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 8 atacttcactggtctcctttctccatggaaaggcatcttactttttggccccccaggaac 67
|||||||||||||||| | || |||||||||||||| ||||||||||| |||||||||||
Sbjct: 12690 atacttcactggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 12631
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 228 bits (115), Expect = 5e-057
Identities = 148/159 (93%)
Strand = Plus / Plus
Query: 162 gattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatccaca 221
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 31883841 gattcagagaagctagttaaagttctgtttgagcttgctagacatcatgcaccatcgaca 31883900
Query: 222 atattccttgatgaaatagatgctatcatcagccagcgtggtgaagctcgcagtgagcat 281
||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 31883901 atatttcttgatgaaattgatgctattatcagccaacgtggtgaagctcgcagtgagcat 31883960
Query: 282 gaggctagtcgtcgcttgaagactgagctacttattcag 320
|| |||||||| |||||||||||||||||||| ||||||
Sbjct: 31883961 gaagctagtcgacgcttgaagactgagctactcattcag 31883999
Score = 206 bits (104), Expect = 2e-050
Identities = 194/224 (86%)
Strand = Plus / Plus
Query: 422 gattcttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgcc 481
|||||| ||||| |||||||| | |||||||||||| || ||||||||||||||| ||||
Sbjct: 31884476 gattctcgtacctcttcctgaggctgaagcaaggcatgctatgtttgaggaacttttgcc 31884535
Query: 482 agcaactacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggtta 541
| |||||||||||||| |||| | || || || | ||||||| ||||| ||||| ||
Sbjct: 31884536 atcaactacctcaaagctagaggttccatatgatactttagttgagaagactgaagggta 31884595
Query: 542 ctctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtct 601
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 31884596 ctctggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactaagacgtct 31884655
Query: 602 catgtcagttcttgaagccagtgacgagttggttccggaggaag 645
|||||||||||||||||||| || ||| |||| || |||||||
Sbjct: 31884656 tatgtcagttcttgaagccagagatgagctggtgcctgaggaag 31884699
Score = 129 bits (65), Expect = 4e-027
Identities = 92/101 (91%)
Strand = Plus / Plus
Query: 318 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 377
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct: 31884157 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 31884216
Query: 378 ccctgggaattggatgcagccatgctccgccggcttgagaa 418
|| |||||| |||| ||||| ||||||||||||||||||||
Sbjct: 31884217 ccttgggaactggacgcagctatgctccgccggcttgagaa 31884257
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||
Sbjct: 31883384 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 31883443
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
||||||||||||| ||||||||||||||
Sbjct: 31883444 catcatcaattgttagcaaatggcgtgg 31883471
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Minus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||| |||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct: 27737602 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 27737543
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
| |||||||||||||| |||||||||||
Sbjct: 27737542 cctcatcaattgtcagtaaatggcgtgg 27737515
Score = 117 bits (59), Expect = 1e-023
Identities = 107/123 (86%)
Strand = Plus / Minus
Query: 189 tttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgctatc 248
||||||||||| |||||||||||||||||||| || || || ||||| || ||||||||
Sbjct: 27736529 tttgagcttgcaaggcatcatgcaccatccaccatttttctcgatgagattgatgctatt 27736470
Query: 249 atcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagactgag 308
|| ||||| |||||||||||||| ||||| ||||| || ||||| || ||||||||||||
Sbjct: 27736469 attagccaacgtggtgaagctcgtagtgaacatgaagccagtcggcgattgaagactgag 27736410
Query: 309 cta 311
|||
Sbjct: 27736409 cta 27736407
Score = 109 bits (55), Expect = 3e-021
Identities = 106/123 (86%)
Strand = Plus / Plus
Query: 644 agaactgcctgaggttggccctctgaaacctgatgatattgaacttgcattaaggaacac 703
|||| |||| |||||||| ||||| |||||||| || || ||| |||| || ||||||||
Sbjct: 31884823 agaattgcccgaggttggtcctctcaaacctgaagacatcgaagttgctttgaggaacac 31884882
Query: 704 taggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtag 763
|||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct: 31884883 aaggccgtctgcgcatctccatgcacatcgctatgagaagtttaaccaggattacggaag 31884942
Query: 764 cca 766
|||
Sbjct: 31884943 cca 31884945
Score = 79.8 bits (40), Expect = 3e-012
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 8 atacttcactggtctcctttctccatggaaaggcatcttactttttggccccccaggaac 67
|||||||||||||||| | || |||||||||||||| ||||||||||| |||||||||||
Sbjct: 31882896 atacttcactggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 31882955
Score = 44.1 bits (22), Expect = 0.17
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 33 tggaaaggcatcttactttttggccccccaggaacaggaaag 74
|||||||| || || |||||||| || |||||||||||||||
Sbjct: 27738259 tggaaaggtatattgctttttggtccaccaggaacaggaaag 27738218
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 228 bits (115), Expect = 5e-057
Identities = 148/159 (93%)
Strand = Plus / Plus
Query: 162 gattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatccaca 221
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 6331224 gattcagagaagctagttaaagttctgtttgagcttgctagacatcatgcaccatcgaca 6331283
Query: 222 atattccttgatgaaatagatgctatcatcagccagcgtggtgaagctcgcagtgagcat 281
||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 6331284 atatttcttgatgaaattgatgctattatcagccaacgtggtgaagctcgcagtgagcat 6331343
Query: 282 gaggctagtcgtcgcttgaagactgagctacttattcag 320
|| |||||||| |||||||||||||||||||| ||||||
Sbjct: 6331344 gaagctagtcgacgcttgaagactgagctactcattcag 6331382
Score = 206 bits (104), Expect = 2e-050
Identities = 194/224 (86%)
Strand = Plus / Plus
Query: 422 gattcttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgcc 481
|||||| ||||| |||||||| | |||||||||||| || ||||||||||||||| ||||
Sbjct: 6331859 gattctcgtacctcttcctgaggctgaagcaaggcatgctatgtttgaggaacttttgcc 6331918
Query: 482 agcaactacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggtta 541
| |||||||||||||| |||| | || || || | ||||||| ||||| ||||| ||
Sbjct: 6331919 atcaactacctcaaagctagaggttccatatgatactttagttgagaagactgaagggta 6331978
Query: 542 ctctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtct 601
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 6331979 ctctggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactaagacgtct 6332038
Query: 602 catgtcagttcttgaagccagtgacgagttggttccggaggaag 645
|||||||||||||||||||| || ||| |||| || |||||||
Sbjct: 6332039 tatgtcagttcttgaagccagagatgagctggtgcctgaggaag 6332082
Score = 129 bits (65), Expect = 4e-027
Identities = 92/101 (91%)
Strand = Plus / Plus
Query: 318 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 377
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct: 6331540 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 6331599
Query: 378 ccctgggaattggatgcagccatgctccgccggcttgagaa 418
|| |||||| |||| ||||| ||||||||||||||||||||
Sbjct: 6331600 ccttgggaactggacgcagctatgctccgccggcttgagaa 6331640
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||
Sbjct: 6330767 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 6330826
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
||||||||||||| ||||||||||||||
Sbjct: 6330827 catcatcaattgttagcaaatggcgtgg 6330854
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Minus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||| |||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct: 2184985 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 2184926
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
| |||||||||||||| |||||||||||
Sbjct: 2184925 cctcatcaattgtcagtaaatggcgtgg 2184898
Score = 117 bits (59), Expect = 1e-023
Identities = 107/123 (86%)
Strand = Plus / Minus
Query: 189 tttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgctatc 248
||||||||||| |||||||||||||||||||| || || || ||||| || ||||||||
Sbjct: 2183912 tttgagcttgcaaggcatcatgcaccatccaccatttttctcgatgagattgatgctatt 2183853
Query: 249 atcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagactgag 308
|| ||||| |||||||||||||| ||||| ||||| || ||||| || ||||||||||||
Sbjct: 2183852 attagccaacgtggtgaagctcgtagtgaacatgaagccagtcggcgattgaagactgag 2183793
Query: 309 cta 311
|||
Sbjct: 2183792 cta 2183790
Score = 109 bits (55), Expect = 3e-021
Identities = 106/123 (86%)
Strand = Plus / Plus
Query: 644 agaactgcctgaggttggccctctgaaacctgatgatattgaacttgcattaaggaacac 703
|||| |||| |||||||| ||||| |||||||| || || ||| |||| || ||||||||
Sbjct: 6332206 agaattgcccgaggttggtcctctcaaacctgaagacatcgaagttgctttgaggaacac 6332265
Query: 704 taggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtag 763
|||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct: 6332266 aaggccgtctgcgcatctccatgcacatcgctatgagaagtttaaccaggattacggaag 6332325
Query: 764 cca 766
|||
Sbjct: 6332326 cca 6332328
Score = 79.8 bits (40), Expect = 3e-012
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 8 atacttcactggtctcctttctccatggaaaggcatcttactttttggccccccaggaac 67
|||||||||||||||| | || |||||||||||||| ||||||||||| |||||||||||
Sbjct: 6330279 atacttcactggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 6330338
Score = 44.1 bits (22), Expect = 0.17
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 33 tggaaaggcatcttactttttggccccccaggaacaggaaag 74
|||||||| || || |||||||| || |||||||||||||||
Sbjct: 2185642 tggaaaggtatattgctttttggtccaccaggaacaggaaag 2185601
>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1414_E05
Length = 105222
Score = 228 bits (115), Expect = 5e-057
Identities = 148/159 (93%)
Strand = Plus / Plus
Query: 162 gattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatccaca 221
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 81209 gattcagagaagctagttaaagttctgtttgagcttgctagacatcatgcaccatcgaca 81268
Query: 222 atattccttgatgaaatagatgctatcatcagccagcgtggtgaagctcgcagtgagcat 281
||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 81269 atatttcttgatgaaattgatgctattatcagccaacgtggtgaagctcgcagtgagcat 81328
Query: 282 gaggctagtcgtcgcttgaagactgagctacttattcag 320
|| |||||||| |||||||||||||||||||| ||||||
Sbjct: 81329 gaagctagtcgacgcttgaagactgagctactcattcag 81367
Score = 206 bits (104), Expect = 2e-050
Identities = 194/224 (86%)
Strand = Plus / Plus
Query: 422 gattcttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgcc 481
|||||| ||||| |||||||| | |||||||||||| || ||||||||||||||| ||||
Sbjct: 81844 gattctcgtacctcttcctgaggctgaagcaaggcatgctatgtttgaggaacttttgcc 81903
Query: 482 agcaactacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggtta 541
| |||||||||||||| |||| | || || || | ||||||| ||||| ||||| ||
Sbjct: 81904 atcaactacctcaaagctagaggttccatatgatactttagttgagaagactgaagggta 81963
Query: 542 ctctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtct 601
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 81964 ctctggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactaagacgtct 82023
Query: 602 catgtcagttcttgaagccagtgacgagttggttccggaggaag 645
|||||||||||||||||||| || ||| |||| || |||||||
Sbjct: 82024 tatgtcagttcttgaagccagagatgagctggtgcctgaggaag 82067
Score = 129 bits (65), Expect = 4e-027
Identities = 92/101 (91%)
Strand = Plus / Plus
Query: 318 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 377
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct: 81525 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 81584
Query: 378 ccctgggaattggatgcagccatgctccgccggcttgagaa 418
|| |||||| |||| ||||| ||||||||||||||||||||
Sbjct: 81585 ccttgggaactggacgcagctatgctccgccggcttgagaa 81625
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||
Sbjct: 80752 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 80811
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
||||||||||||| ||||||||||||||
Sbjct: 80812 catcatcaattgttagcaaatggcgtgg 80839
Score = 109 bits (55), Expect = 3e-021
Identities = 106/123 (86%)
Strand = Plus / Plus
Query: 644 agaactgcctgaggttggccctctgaaacctgatgatattgaacttgcattaaggaacac 703
|||| |||| |||||||| ||||| |||||||| || || ||| |||| || ||||||||
Sbjct: 82191 agaattgcccgaggttggtcctctcaaacctgaagacatcgaagttgctttgaggaacac 82250
Query: 704 taggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtag 763
|||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct: 82251 aaggccgtctgcgcatctccatgcacatcgctatgagaagtttaaccaggattacggaag 82310
Query: 764 cca 766
|||
Sbjct: 82311 cca 82313
Score = 79.8 bits (40), Expect = 3e-012
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 8 atacttcactggtctcctttctccatggaaaggcatcttactttttggccccccaggaac 67
|||||||||||||||| | || |||||||||||||| ||||||||||| |||||||||||
Sbjct: 80264 atacttcactggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 80323
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 228 bits (115), Expect = 5e-057
Identities = 148/159 (93%)
Strand = Plus / Plus
Query: 162 gattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatccaca 221
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 6232057 gattcagagaagctagttaaagttctgtttgagcttgctagacatcatgcaccatcgaca 6232116
Query: 222 atattccttgatgaaatagatgctatcatcagccagcgtggtgaagctcgcagtgagcat 281
||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 6232117 atatttcttgatgaaattgatgctattatcagccaacgtggtgaagctcgcagtgagcat 6232176
Query: 282 gaggctagtcgtcgcttgaagactgagctacttattcag 320
|| |||||||| |||||||||||||||||||| ||||||
Sbjct: 6232177 gaagctagtcgacgcttgaagactgagctactcattcag 6232215
Score = 206 bits (104), Expect = 2e-050
Identities = 194/224 (86%)
Strand = Plus / Plus
Query: 422 gattcttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgcc 481
|||||| ||||| |||||||| | |||||||||||| || ||||||||||||||| ||||
Sbjct: 6232692 gattctcgtacctcttcctgaggctgaagcaaggcatgctatgtttgaggaacttttgcc 6232751
Query: 482 agcaactacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggtta 541
| |||||||||||||| |||| | || || || | ||||||| ||||| ||||| ||
Sbjct: 6232752 atcaactacctcaaagctagaggttccatatgatactttagttgagaagactgaagggta 6232811
Query: 542 ctctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtct 601
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 6232812 ctctggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactaagacgtct 6232871
Query: 602 catgtcagttcttgaagccagtgacgagttggttccggaggaag 645
|||||||||||||||||||| || ||| |||| || |||||||
Sbjct: 6232872 tatgtcagttcttgaagccagagatgagctggtgcctgaggaag 6232915
Score = 129 bits (65), Expect = 4e-027
Identities = 92/101 (91%)
Strand = Plus / Plus
Query: 318 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 377
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct: 6232373 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 6232432
Query: 378 ccctgggaattggatgcagccatgctccgccggcttgagaa 418
|| |||||| |||| ||||| ||||||||||||||||||||
Sbjct: 6232433 ccttgggaactggacgcagctatgctccgccggcttgagaa 6232473
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||
Sbjct: 6231600 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 6231659
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
||||||||||||| ||||||||||||||
Sbjct: 6231660 catcatcaattgttagcaaatggcgtgg 6231687
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Minus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||| |||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct: 2124829 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 2124770
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
| |||||||||||||| |||||||||||
Sbjct: 2124769 cctcatcaattgtcagtaaatggcgtgg 2124742
Score = 117 bits (59), Expect = 1e-023
Identities = 107/123 (86%)
Strand = Plus / Minus
Query: 189 tttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgctatc 248
||||||||||| |||||||||||||||||||| || || || ||||| || ||||||||
Sbjct: 2123756 tttgagcttgcaaggcatcatgcaccatccaccatttttctcgatgagattgatgctatt 2123697
Query: 249 atcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagactgag 308
|| ||||| |||||||||||||| ||||| ||||| || ||||| || ||||||||||||
Sbjct: 2123696 attagccaacgtggtgaagctcgtagtgaacatgaagccagtcggcgattgaagactgag 2123637
Query: 309 cta 311
|||
Sbjct: 2123636 cta 2123634
Score = 109 bits (55), Expect = 3e-021
Identities = 106/123 (86%)
Strand = Plus / Plus
Query: 644 agaactgcctgaggttggccctctgaaacctgatgatattgaacttgcattaaggaacac 703
|||| |||| |||||||| ||||| |||||||| || || ||| |||| || ||||||||
Sbjct: 6233039 agaattgcccgaggttggtcctctcaaacctgaagacatcgaagttgctttgaggaacac 6233098
Query: 704 taggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtag 763
|||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct: 6233099 aaggccgtctgcgcatctccatgcacatcgctatgagaagtttaaccaggattacggaag 6233158
Query: 764 cca 766
|||
Sbjct: 6233159 cca 6233161
Score = 79.8 bits (40), Expect = 3e-012
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 8 atacttcactggtctcctttctccatggaaaggcatcttactttttggccccccaggaac 67
|||||||||||||||| | || |||||||||||||| ||||||||||| |||||||||||
Sbjct: 6231112 atacttcactggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 6231171
Score = 44.1 bits (22), Expect = 0.17
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 33 tggaaaggcatcttactttttggccccccaggaacaggaaag 74
|||||||| || || |||||||| || |||||||||||||||
Sbjct: 2125486 tggaaaggtatattgctttttggtccaccaggaacaggaaag 2125445
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 228 bits (115), Expect = 5e-057
Identities = 148/159 (93%)
Strand = Plus / Plus
Query: 162 gattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatccaca 221
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 31433778 gattcagagaagctagttaaagttctgtttgagcttgctagacatcatgcaccatcgaca 31433837
Query: 222 atattccttgatgaaatagatgctatcatcagccagcgtggtgaagctcgcagtgagcat 281
||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 31433838 atatttcttgatgaaattgatgctattatcagccaacgtggtgaagctcgcagtgagcat 31433897
Query: 282 gaggctagtcgtcgcttgaagactgagctacttattcag 320
|| |||||||| |||||||||||||||||||| ||||||
Sbjct: 31433898 gaagctagtcgacgcttgaagactgagctactcattcag 31433936
Score = 206 bits (104), Expect = 2e-050
Identities = 194/224 (86%)
Strand = Plus / Plus
Query: 422 gattcttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgcc 481
|||||| ||||| |||||||| | |||||||||||| || ||||||||||||||| ||||
Sbjct: 31434413 gattctcgtacctcttcctgaggctgaagcaaggcatgctatgtttgaggaacttttgcc 31434472
Query: 482 agcaactacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggtta 541
| |||||||||||||| |||| | || || || | ||||||| ||||| ||||| ||
Sbjct: 31434473 atcaactacctcaaagctagaggttccatatgatactttagttgagaagactgaagggta 31434532
Query: 542 ctctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtct 601
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 31434533 ctctggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactaagacgtct 31434592
Query: 602 catgtcagttcttgaagccagtgacgagttggttccggaggaag 645
|||||||||||||||||||| || ||| |||| || |||||||
Sbjct: 31434593 tatgtcagttcttgaagccagagatgagctggtgcctgaggaag 31434636
Score = 129 bits (65), Expect = 4e-027
Identities = 92/101 (91%)
Strand = Plus / Plus
Query: 318 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 377
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct: 31434094 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 31434153
Query: 378 ccctgggaattggatgcagccatgctccgccggcttgagaa 418
|| |||||| |||| ||||| ||||||||||||||||||||
Sbjct: 31434154 ccttgggaactggacgcagctatgctccgccggcttgagaa 31434194
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||
Sbjct: 31433321 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 31433380
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
||||||||||||| ||||||||||||||
Sbjct: 31433381 catcatcaattgttagcaaatggcgtgg 31433408
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Minus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||| |||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct: 27326550 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 27326491
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
| |||||||||||||| |||||||||||
Sbjct: 27326490 cctcatcaattgtcagtaaatggcgtgg 27326463
Score = 117 bits (59), Expect = 1e-023
Identities = 107/123 (86%)
Strand = Plus / Minus
Query: 189 tttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgctatc 248
||||||||||| |||||||||||||||||||| || || || ||||| || ||||||||
Sbjct: 27325477 tttgagcttgcaaggcatcatgcaccatccaccatttttctcgatgagattgatgctatt 27325418
Query: 249 atcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagactgag 308
|| ||||| |||||||||||||| ||||| ||||| || ||||| || ||||||||||||
Sbjct: 27325417 attagccaacgtggtgaagctcgtagtgaacatgaagccagtcggcgattgaagactgag 27325358
Query: 309 cta 311
|||
Sbjct: 27325357 cta 27325355
Score = 109 bits (55), Expect = 3e-021
Identities = 106/123 (86%)
Strand = Plus / Plus
Query: 644 agaactgcctgaggttggccctctgaaacctgatgatattgaacttgcattaaggaacac 703
|||| |||| |||||||| ||||| |||||||| || || ||| |||| || ||||||||
Sbjct: 31434760 agaattgcccgaggttggtcctctcaaacctgaagacatcgaagttgctttgaggaacac 31434819
Query: 704 taggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtag 763
|||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct: 31434820 aaggccgtctgcgcatctccatgcacatcgctatgagaagtttaaccaggattacggaag 31434879
Query: 764 cca 766
|||
Sbjct: 31434880 cca 31434882
Score = 79.8 bits (40), Expect = 3e-012
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 8 atacttcactggtctcctttctccatggaaaggcatcttactttttggccccccaggaac 67
|||||||||||||||| | || |||||||||||||| ||||||||||| |||||||||||
Sbjct: 31432833 atacttcactggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 31432892
Score = 44.1 bits (22), Expect = 0.17
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 33 tggaaaggcatcttactttttggccccccaggaacaggaaag 74
|||||||| || || |||||||| || |||||||||||||||
Sbjct: 27327207 tggaaaggtatattgctttttggtccaccaggaacaggaaag 27327166
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 228 bits (115), Expect = 5e-057
Identities = 148/159 (93%)
Strand = Plus / Plus
Query: 162 gattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatccaca 221
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 31803171 gattcagagaagctagttaaagttctgtttgagcttgctagacatcatgcaccatcgaca 31803230
Query: 222 atattccttgatgaaatagatgctatcatcagccagcgtggtgaagctcgcagtgagcat 281
||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 31803231 atatttcttgatgaaattgatgctattatcagccaacgtggtgaagctcgcagtgagcat 31803290
Query: 282 gaggctagtcgtcgcttgaagactgagctacttattcag 320
|| |||||||| |||||||||||||||||||| ||||||
Sbjct: 31803291 gaagctagtcgacgcttgaagactgagctactcattcag 31803329
Score = 206 bits (104), Expect = 2e-050
Identities = 194/224 (86%)
Strand = Plus / Plus
Query: 422 gattcttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgcc 481
|||||| ||||| |||||||| | |||||||||||| || ||||||||||||||| ||||
Sbjct: 31803806 gattctcgtacctcttcctgaggctgaagcaaggcatgctatgtttgaggaacttttgcc 31803865
Query: 482 agcaactacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggtta 541
| |||||||||||||| |||| | || || || | ||||||| ||||| ||||| ||
Sbjct: 31803866 atcaactacctcaaagctagaggttccatatgatactttagttgagaagactgaagggta 31803925
Query: 542 ctctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtct 601
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 31803926 ctctggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactaagacgtct 31803985
Query: 602 catgtcagttcttgaagccagtgacgagttggttccggaggaag 645
|||||||||||||||||||| || ||| |||| || |||||||
Sbjct: 31803986 tatgtcagttcttgaagccagagatgagctggtgcctgaggaag 31804029
Score = 129 bits (65), Expect = 4e-027
Identities = 92/101 (91%)
Strand = Plus / Plus
Query: 318 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 377
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct: 31803487 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 31803546
Query: 378 ccctgggaattggatgcagccatgctccgccggcttgagaa 418
|| |||||| |||| ||||| ||||||||||||||||||||
Sbjct: 31803547 ccttgggaactggacgcagctatgctccgccggcttgagaa 31803587
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||
Sbjct: 31802714 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 31802773
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
||||||||||||| ||||||||||||||
Sbjct: 31802774 catcatcaattgttagcaaatggcgtgg 31802801
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Minus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||| |||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct: 27656932 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 27656873
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
| |||||||||||||| |||||||||||
Sbjct: 27656872 cctcatcaattgtcagtaaatggcgtgg 27656845
Score = 117 bits (59), Expect = 1e-023
Identities = 107/123 (86%)
Strand = Plus / Minus
Query: 189 tttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgctatc 248
||||||||||| |||||||||||||||||||| || || || ||||| || ||||||||
Sbjct: 27655859 tttgagcttgcaaggcatcatgcaccatccaccatttttctcgatgagattgatgctatt 27655800
Query: 249 atcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagactgag 308
|| ||||| |||||||||||||| ||||| ||||| || ||||| || ||||||||||||
Sbjct: 27655799 attagccaacgtggtgaagctcgtagtgaacatgaagccagtcggcgattgaagactgag 27655740
Query: 309 cta 311
|||
Sbjct: 27655739 cta 27655737
Score = 109 bits (55), Expect = 3e-021
Identities = 106/123 (86%)
Strand = Plus / Plus
Query: 644 agaactgcctgaggttggccctctgaaacctgatgatattgaacttgcattaaggaacac 703
|||| |||| |||||||| ||||| |||||||| || || ||| |||| || ||||||||
Sbjct: 31804153 agaattgcccgaggttggtcctctcaaacctgaagacatcgaagttgctttgaggaacac 31804212
Query: 704 taggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtag 763
|||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct: 31804213 aaggccgtctgcgcatctccatgcacatcgctatgagaagtttaaccaggattacggaag 31804272
Query: 764 cca 766
|||
Sbjct: 31804273 cca 31804275
Score = 79.8 bits (40), Expect = 3e-012
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 8 atacttcactggtctcctttctccatggaaaggcatcttactttttggccccccaggaac 67
|||||||||||||||| | || |||||||||||||| ||||||||||| |||||||||||
Sbjct: 31802226 atacttcactggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 31802285
Score = 44.1 bits (22), Expect = 0.17
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 33 tggaaaggcatcttactttttggccccccaggaacaggaaag 74
|||||||| || || |||||||| || |||||||||||||||
Sbjct: 27657589 tggaaaggtatattgctttttggtccaccaggaacaggaaag 27657548
>gb|AACV01002092.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002092, whole
genome shotgun sequence
Length = 25972
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Minus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||| |||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct: 13037 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 12978
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
| |||||||||||||| |||||||||||
Sbjct: 12977 cctcatcaattgtcagtaaatggcgtgg 12950
Score = 117 bits (59), Expect = 1e-023
Identities = 107/123 (86%)
Strand = Plus / Minus
Query: 189 tttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgctatc 248
||||||||||| |||||||||||||||||||| || || || ||||| || ||||||||
Sbjct: 11964 tttgagcttgcaaggcatcatgcaccatccaccatttttctcgatgagattgatgctatt 11905
Query: 249 atcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagactgag 308
|| ||||| |||||||||||||| ||||| ||||| || ||||| || ||||||||||||
Sbjct: 11904 attagccaacgtggtgaagctcgtagtgaacatgaagccagtcggcgattgaagactgag 11845
Query: 309 cta 311
|||
Sbjct: 11844 cta 11842
Score = 44.1 bits (22), Expect = 0.17
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 33 tggaaaggcatcttactttttggccccccaggaacaggaaag 74
|||||||| || || |||||||| || |||||||||||||||
Sbjct: 13694 tggaaaggtatattgctttttggtccaccaggaacaggaaag 13653
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0007F06
Length = 150817
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Minus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||| |||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct: 124226 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 124167
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
| |||||||||||||| |||||||||||
Sbjct: 124166 cctcatcaattgtcagtaaatggcgtgg 124139
Score = 117 bits (59), Expect = 1e-023
Identities = 107/123 (86%)
Strand = Plus / Minus
Query: 189 tttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgctatc 248
||||||||||| |||||||||||||||||||| || || || ||||| || ||||||||
Sbjct: 123153 tttgagcttgcaaggcatcatgcaccatccaccatttttctcgatgagattgatgctatt 123094
Query: 249 atcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagactgag 308
|| ||||| |||||||||||||| ||||| ||||| || ||||| || ||||||||||||
Sbjct: 123093 attagccaacgtggtgaagctcgtagtgaacatgaagccagtcggcgattgaagactgag 123034
Query: 309 cta 311
|||
Sbjct: 123033 cta 123031
Score = 44.1 bits (22), Expect = 0.17
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 33 tggaaaggcatcttactttttggccccccaggaacaggaaag 74
|||||||| || || |||||||| || |||||||||||||||
Sbjct: 124883 tggaaaggtatattgctttttggtccaccaggaacaggaaag 124842
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485G01
Length = 167203
Score = 119 bits (60), Expect = 4e-024
Identities = 81/88 (92%)
Strand = Plus / Minus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||| |||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct: 65498 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 65439
Query: 133 catcatcaattgtcagcaaatggcgtgg 160
| |||||||||||||| |||||||||||
Sbjct: 65438 cctcatcaattgtcagtaaatggcgtgg 65411
Score = 117 bits (59), Expect = 1e-023
Identities = 107/123 (86%)
Strand = Plus / Minus
Query: 189 tttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgctatc 248
||||||||||| |||||||||||||||||||| || || || ||||| || ||||||||
Sbjct: 64425 tttgagcttgcaaggcatcatgcaccatccaccatttttctcgatgagattgatgctatt 64366
Query: 249 atcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagactgag 308
|| ||||| |||||||||||||| ||||| ||||| || ||||| || ||||||||||||
Sbjct: 64365 attagccaacgtggtgaagctcgtagtgaacatgaagccagtcggcgattgaagactgag 64306
Query: 309 cta 311
|||
Sbjct: 64305 cta 64303
Score = 44.1 bits (22), Expect = 0.17
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 33 tggaaaggcatcttactttttggccccccaggaacaggaaag 74
|||||||| || || |||||||| || |||||||||||||||
Sbjct: 66155 tggaaaggtatattgctttttggtccaccaggaacaggaaag 66114
>gb|AU091713.1|AU091713 AU091713 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S20142, mRNA sequence
Length = 701
Score = 91.7 bits (46), Expect = 8e-016
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 49 tttttggccccccaggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgca 108
||||||| || ||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct: 625 tttttggtccaccaggaacaggaaagacaatgctagcaaaagctgtggctactgagtgca 684
Query: 109 aaaccaccttctt 121
| || ||||||||
Sbjct: 685 anacaaccttctt 697
>dbj|AK062045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A09, full
insert sequence
Length = 837
Score = 81.8 bits (41), Expect = 8e-013
Identities = 152/189 (80%)
Strand = Plus / Plus
Query: 242 tgctatcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaa 301
|||||| || ||||| |||||||||||||| ||||| ||||| || ||||| || |||||
Sbjct: 1 tgctattattagccaacgtggtgaagctcgtagtgaacatgaagccagtcggcgattgaa 60
Query: 302 gactgagctacttattcagatggatggtttgacaaagacaaacgacttggtatttgtact 361
|||||||||| | || ||||||||||| || || |||||| | || | || ||||| ||
Sbjct: 61 gactgagctattaatacagatggatgggttaactaagacagatgatctcgtttttgttct 120
Query: 362 tgcagctacaaatcttccctgggaattggatgcagccatgctccgccggcttgagaagcg 421
|| || |||||| | || |||||| |||||||||| ||| | ||||| | ||||| ||
Sbjct: 121 agccgccacaaatttgccatgggaactggatgcagcaatgttgcgccgtttggagaaacg 180
Query: 422 gattcttgt 430
||||||||
Sbjct: 181 tattcttgt 189
>gb|CB640836.1|CB640836 OSJNEa16J19.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa16J19 5', mRNA sequence
Length = 528
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 30 ccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaaaa 89
||||| ||||| || |||||||||||||| || || ||||||||||||||||| || |||
Sbjct: 397 ccatgtaaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaa 456
Query: 90 gcggtcgctac 100
|| || |||||
Sbjct: 457 gctgtggctac 467
>dbj|AK066938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093A20, full
insert sequence
Length = 2902
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 30 ccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaaaa 89
||||| ||||| || |||||||||||||| || || ||||||||||||||||| || |||
Sbjct: 1522 ccatgtaaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaa 1581
Query: 90 gcggtcgctac 100
|| || |||||
Sbjct: 1582 gctgtggctac 1592
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
complete sequence
Length = 132243
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 30 ccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaaaa 89
||||| ||||| || |||||||||||||| || || ||||||||||||||||| || |||
Sbjct: 51668 ccatgtaaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaa 51609
Query: 90 gcggtcgctac 100
|| || |||||
Sbjct: 51608 gctgtggctac 51598
>gb|AACV01006579.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006579, whole
genome shotgun sequence
Length = 24250
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 30 ccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaaaa 89
||||| ||||| || |||||||||||||| || || ||||||||||||||||| || |||
Sbjct: 15951 ccatgtaaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaa 15892
Query: 90 gcggtcgctac 100
|| || |||||
Sbjct: 15891 gctgtggctac 15881
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 30 ccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaaaa 89
||||| ||||| || |||||||||||||| || || ||||||||||||||||| || |||
Sbjct: 4155712 ccatgtaaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaa 4155653
Query: 90 gcggtcgctac 100
|| || |||||
Sbjct: 4155652 gctgtggctac 4155642
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 30 ccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaaaa 89
||||| ||||| || |||||||||||||| || || ||||||||||||||||| || |||
Sbjct: 12896181 ccatgtaaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaa 12896122
Query: 90 gcggtcgctac 100
|| || |||||
Sbjct: 12896121 gctgtggctac 12896111
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 30 ccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaaaa 89
||||| ||||| || |||||||||||||| || || ||||||||||||||||| || |||
Sbjct: 13088543 ccatgtaaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaa 13088484
Query: 90 gcggtcgctac 100
|| || |||||
Sbjct: 13088483 gctgtggctac 13088473
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 30 ccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaaaa 89
||||| ||||| || |||||||||||||| || || ||||||||||||||||| || |||
Sbjct: 12810215 ccatgtaaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaa 12810156
Query: 90 gcggtcgctac 100
|| || |||||
Sbjct: 12810155 gctgtggctac 12810145
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 30 ccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaaaa 89
||||| ||||| || |||||||||||||| || || ||||||||||||||||| || |||
Sbjct: 12813452 ccatgtaaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaa 12813393
Query: 90 gcggtcgctac 100
|| || |||||
Sbjct: 12813392 gctgtggctac 12813382
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,590,035
Number of Sequences: 438736
Number of extensions: 1590035
Number of successful extensions: 7900
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7603
Number of HSP's gapped (non-prelim): 295
length of query: 1174
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1153
effective length of database: 2,791,206,460
effective search space: 3218261048380
effective search space used: 3218261048380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)