BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.2
(710 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 161 6e-037
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 161 6e-037
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 161 6e-037
gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) c... 161 6e-037
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 161 6e-037
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 161 6e-037
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 161 6e-037
gb|CB659584.1|CB659584 OSJNEc16L01.r OSJNEc Oryza sativa (j... 117 8e-024
gb|AY324384.1| Oryza sativa (japonica cultivar-group) callo... 117 8e-024
ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA 117 8e-024
dbj|AK105109.1| Oryza sativa (japonica cultivar-group) cDNA... 109 2e-021
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 101 5e-019
dbj|AP005290.2| Oryza sativa (japonica cultivar-group) geno... 101 5e-019
gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) c... 101 5e-019
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 101 5e-019
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 101 5e-019
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 101 5e-019
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 101 5e-019
dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chro... 50 0.002
gb|AACV01013161.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP007257.2| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.10
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 44 0.10
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 44 0.10
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 44 0.10
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 44 0.10
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.10
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 161 bits (81), Expect = 6e-037
Identities = 146/169 (86%)
Strand = Plus / Minus
Query: 353 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 412
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 155414 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 155355
Query: 413 cctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccag 472
| ||||| ||||| || ||||| || || || | |||||||| || |||||||||||
Sbjct: 155354 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 155295
Query: 473 gatgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtatc 521
|||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 155294 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatc 155246
Score = 115 bits (58), Expect = 3e-023
Identities = 142/170 (83%)
Strand = Plus / Minus
Query: 138 tcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttgatcaagggt 197
||||| || ||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 155727 tcagtcggtaggaggaggttcagtgcggagttccagcttgtcttccggttgatcaagggc 155668
Query: 198 ctgatatttataacatttacagccatcgtggtaatcctaatagcgatccctggcatgacg 257
|| ||||| ||||||||| ||||| || || || |||| || |||||| ||||||
Sbjct: 155667 cttatattcataacatttgtcgccattgttgtgatattaattgccatccctcacatgaca 155608
Query: 258 gtgctggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
|| || || || || ||||||||||||||||||||||| |||||||||||
Sbjct: 155607 gttcttgatatcttcgtttgcatccttgctttcatgccaactggatgggg 155558
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 80 ggtttattgcttctcatgggttgtaatttttgtgattttgctcgttatgaag 131
|||||||||||| ||||||||||| ||||| || ||||| || || ||||||
Sbjct: 155933 ggtttattgcttttcatgggttgtgattttcgtaattttacttgtcatgaag 155882
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 161 bits (81), Expect = 6e-037
Identities = 146/169 (86%)
Strand = Plus / Minus
Query: 353 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 412
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 155414 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 155355
Query: 413 cctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccag 472
| ||||| ||||| || ||||| || || || | |||||||| || |||||||||||
Sbjct: 155354 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 155295
Query: 473 gatgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtatc 521
|||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 155294 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatc 155246
Score = 115 bits (58), Expect = 3e-023
Identities = 142/170 (83%)
Strand = Plus / Minus
Query: 138 tcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttgatcaagggt 197
||||| || ||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 155727 tcagtcggtaggaggaggttcagtgcggagttccagcttgtcttccggttgatcaagggc 155668
Query: 198 ctgatatttataacatttacagccatcgtggtaatcctaatagcgatccctggcatgacg 257
|| ||||| ||||||||| ||||| || || || |||| || |||||| ||||||
Sbjct: 155667 cttatattcataacatttgtcgccattgttgtgatattaattgccatccctcacatgaca 155608
Query: 258 gtgctggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
|| || || || || ||||||||||||||||||||||| |||||||||||
Sbjct: 155607 gttcttgatatcttcgtttgcatccttgctttcatgccaactggatgggg 155558
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 80 ggtttattgcttctcatgggttgtaatttttgtgattttgctcgttatgaag 131
|||||||||||| ||||||||||| ||||| || ||||| || || ||||||
Sbjct: 155933 ggtttattgcttttcatgggttgtgattttcgtaattttacttgtcatgaag 155882
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0069C14
Length = 150579
Score = 161 bits (81), Expect = 6e-037
Identities = 146/169 (86%)
Strand = Plus / Minus
Query: 353 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 412
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 16616 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 16557
Query: 413 cctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccag 472
| ||||| ||||| || ||||| || || || | |||||||| || |||||||||||
Sbjct: 16556 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 16497
Query: 473 gatgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtatc 521
|||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 16496 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatc 16448
Score = 115 bits (58), Expect = 3e-023
Identities = 142/170 (83%)
Strand = Plus / Minus
Query: 138 tcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttgatcaagggt 197
||||| || ||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 16929 tcagtcggtaggaggaggttcagtgcggagttccagcttgtcttccggttgatcaagggc 16870
Query: 198 ctgatatttataacatttacagccatcgtggtaatcctaatagcgatccctggcatgacg 257
|| ||||| ||||||||| ||||| || || || |||| || |||||| ||||||
Sbjct: 16869 cttatattcataacatttgtcgccattgttgtgatattaattgccatccctcacatgaca 16810
Query: 258 gtgctggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
|| || || || || ||||||||||||||||||||||| |||||||||||
Sbjct: 16809 gttcttgatatcttcgtttgcatccttgctttcatgccaactggatgggg 16760
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 80 ggtttattgcttctcatgggttgtaatttttgtgattttgctcgttatgaag 131
|||||||||||| ||||||||||| ||||| || ||||| || || ||||||
Sbjct: 17135 ggtttattgcttttcatgggttgtgattttcgtaattttacttgtcatgaag 17084
>gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014975, whole
genome shotgun sequence
Length = 9397
Score = 161 bits (81), Expect = 6e-037
Identities = 146/169 (86%)
Strand = Plus / Plus
Query: 353 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 412
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 5103 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 5162
Query: 413 cctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccag 472
| ||||| ||||| || ||||| || || || | |||||||| || |||||||||||
Sbjct: 5163 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 5222
Query: 473 gatgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtatc 521
|||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 5223 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatc 5271
Score = 115 bits (58), Expect = 3e-023
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 138 tcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttgatcaagggt 197
||||| || ||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 4790 tcagtcggtaggaggaggttcagtgcggagttccagcttgtcttccggttgatcaagggc 4849
Query: 198 ctgatatttataacatttacagccatcgtggtaatcctaatagcgatccctggcatgacg 257
|| ||||| ||||||||| ||||| || || || |||| || |||||| ||||||
Sbjct: 4850 cttatattcataacatttgtcgccattgttgtgatattaattgccatccctcacatgaca 4909
Query: 258 gtgctggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
|| || || || || ||||||||||||||||||||||| |||||||||||
Sbjct: 4910 gttcttgatatcttcgtttgcatccttgctttcatgccaactggatgggg 4959
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 80 ggtttattgcttctcatgggttgtaatttttgtgattttgctcgttatgaag 131
|||||||||||| ||||||||||| ||||| || ||||| || || ||||||
Sbjct: 4584 ggtttattgcttttcatgggttgtgattttcgtaattttacttgtcatgaag 4635
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 161 bits (81), Expect = 6e-037
Identities = 146/169 (86%)
Strand = Plus / Minus
Query: 353 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 412
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 11850072 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 11850013
Query: 413 cctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccag 472
| ||||| ||||| || ||||| || || || | |||||||| || |||||||||||
Sbjct: 11850012 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 11849953
Query: 473 gatgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtatc 521
|||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 11849952 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatc 11849904
Score = 115 bits (58), Expect = 3e-023
Identities = 142/170 (83%)
Strand = Plus / Minus
Query: 138 tcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttgatcaagggt 197
||||| || ||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 11850385 tcagtcggtaggaggaggttcagtgcggagttccagcttgtcttccggttgatcaagggc 11850326
Query: 198 ctgatatttataacatttacagccatcgtggtaatcctaatagcgatccctggcatgacg 257
|| ||||| ||||||||| ||||| || || || |||| || |||||| ||||||
Sbjct: 11850325 cttatattcataacatttgtcgccattgttgtgatattaattgccatccctcacatgaca 11850266
Query: 258 gtgctggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
|| || || || || ||||||||||||||||||||||| |||||||||||
Sbjct: 11850265 gttcttgatatcttcgtttgcatccttgctttcatgccaactggatgggg 11850216
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 80 ggtttattgcttctcatgggttgtaatttttgtgattttgctcgttatgaag 131
|||||||||||| ||||||||||| ||||| || ||||| || || ||||||
Sbjct: 11850591 ggtttattgcttttcatgggttgtgattttcgtaattttacttgtcatgaag 11850540
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 161 bits (81), Expect = 6e-037
Identities = 146/169 (86%)
Strand = Plus / Minus
Query: 353 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 412
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 29548809 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 29548750
Query: 413 cctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccag 472
| ||||| ||||| || ||||| || || || | |||||||| || |||||||||||
Sbjct: 29548749 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 29548690
Query: 473 gatgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtatc 521
|||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 29548689 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatc 29548641
Score = 115 bits (58), Expect = 3e-023
Identities = 142/170 (83%)
Strand = Plus / Minus
Query: 138 tcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttgatcaagggt 197
||||| || ||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 29549122 tcagtcggtaggaggaggttcagtgcggagttccagcttgtcttccggttgatcaagggc 29549063
Query: 198 ctgatatttataacatttacagccatcgtggtaatcctaatagcgatccctggcatgacg 257
|| ||||| ||||||||| ||||| || || || |||| || |||||| ||||||
Sbjct: 29549062 cttatattcataacatttgtcgccattgttgtgatattaattgccatccctcacatgaca 29549003
Query: 258 gtgctggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
|| || || || || ||||||||||||||||||||||| |||||||||||
Sbjct: 29549002 gttcttgatatcttcgtttgcatccttgctttcatgccaactggatgggg 29548953
Score = 50.1 bits (25), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 462 ttccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcagatctcccg 517
|||||||| ||| |||| ||||||||||| |||||| | || || |||||||||||
Sbjct: 3910671 ttccagacgaggctgctcttcaaccaggccttcagccgaggcctccagatctcccg 3910616
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 80 ggtttattgcttctcatgggttgtaatttttgtgattttgctcgttatgaag 131
|||||||||||| ||||||||||| ||||| || ||||| || || ||||||
Sbjct: 29549328 ggtttattgcttttcatgggttgtgattttcgtaattttacttgtcatgaag 29549277
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 161 bits (81), Expect = 6e-037
Identities = 146/169 (86%)
Strand = Plus / Minus
Query: 353 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 412
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 30518053 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 30517994
Query: 413 cctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccag 472
| ||||| ||||| || ||||| || || || | |||||||| || |||||||||||
Sbjct: 30517993 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 30517934
Query: 473 gatgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtatc 521
|||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 30517933 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatc 30517885
Score = 115 bits (58), Expect = 3e-023
Identities = 142/170 (83%)
Strand = Plus / Minus
Query: 138 tcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttgatcaagggt 197
||||| || ||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 30518366 tcagtcggtaggaggaggttcagtgcggagttccagcttgtcttccggttgatcaagggc 30518307
Query: 198 ctgatatttataacatttacagccatcgtggtaatcctaatagcgatccctggcatgacg 257
|| ||||| ||||||||| ||||| || || || |||| || |||||| ||||||
Sbjct: 30518306 cttatattcataacatttgtcgccattgttgtgatattaattgccatccctcacatgaca 30518247
Query: 258 gtgctggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
|| || || || || ||||||||||||||||||||||| |||||||||||
Sbjct: 30518246 gttcttgatatcttcgtttgcatccttgctttcatgccaactggatgggg 30518197
Score = 50.1 bits (25), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 462 ttccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcagatctcccg 517
|||||||| ||| |||| ||||||||||| |||||| | || || |||||||||||
Sbjct: 4078019 ttccagacgaggctgctcttcaaccaggccttcagccgaggcctccagatctcccg 4077964
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 80 ggtttattgcttctcatgggttgtaatttttgtgattttgctcgttatgaag 131
|||||||||||| ||||||||||| ||||| || ||||| || || ||||||
Sbjct: 30518572 ggtttattgcttttcatgggttgtgattttcgtaattttacttgtcatgaag 30518521
>gb|CB659584.1|CB659584 OSJNEc16L01.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16L01 3', mRNA sequence
Length = 760
Score = 117 bits (59), Expect = 8e-024
Identities = 194/239 (81%)
Strand = Plus / Minus
Query: 70 agagtgtgctggtttattgcttctcatgggttgtaatttttgtgattttgctcgttatga 129
||||||| ||||| |||||| | ||||||||||| || ||||| ||| |||| || ||||
Sbjct: 610 agagtgtcctggtctattgcctgtcatgggttgtcatctttgtaattctgcttgtgatga 551
Query: 130 agaccgtatcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttga 189
||||||| ||||| || ||| | | ||||| || || ||||| || |||||||||||||
Sbjct: 550 agaccgtgtcagttgggaggcggaaattcagcgcggacttccaacttgtgttccggttga 491
Query: 190 tcaagggtctgatatttataacatttacagccatcgtggtaatcctaatagcgatccctg 249
| ||||| |||||||||||||||||| ||||| | ||||| | ||||| ||||||
Sbjct: 490 ttaaggggttgatatttataacatttatctccatcattataatcttgatagcaatccctc 431
Query: 250 gcatgacggtgctggacatatttgtttgcatccttgctttcatgcccactggatggggt 308
||||| || | |||||| ||||||||||| ||||| |||||||| ||||| ||||||
Sbjct: 430 atatgacagtccaggacatctttgtttgcattcttgccttcatgccaactggctggggt 372
Score = 101 bits (51), Expect = 5e-019
Identities = 128/155 (82%)
Strand = Plus / Minus
Query: 360 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 419
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 320 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 261
Query: 420 acgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctg 479
|| || ||||| |||||||| || || |||| || || || ||||||||||| |||||
Sbjct: 260 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 201
Query: 480 ttcaaccaggcgttcagcagnggtctgcagatctc 514
||||||||||| |||||||| ||||||||||||||
Sbjct: 200 ttcaaccaggccttcagcagaggtctgcagatctc 166
>gb|AY324384.1| Oryza sativa (japonica cultivar-group) callose synthase-like protein
mRNA, partial cds
Length = 2727
Score = 117 bits (59), Expect = 8e-024
Identities = 194/239 (81%)
Strand = Plus / Plus
Query: 70 agagtgtgctggtttattgcttctcatgggttgtaatttttgtgattttgctcgttatga 129
||||||| ||||| |||||| | ||||||||||| || ||||| ||| |||| || ||||
Sbjct: 2231 agagtgtcctggtctattgcctgtcatgggttgtcatctttgtaattctgcttgtgatga 2290
Query: 130 agaccgtatcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttga 189
||||||| ||||| || ||| | | ||||| || || ||||| || |||||||||||||
Sbjct: 2291 agaccgtgtcagttgggaggcggaaattcagcgcggacttccaacttgtgttccggttga 2350
Query: 190 tcaagggtctgatatttataacatttacagccatcgtggtaatcctaatagcgatccctg 249
| ||||| |||||||||||||||||| ||||| | ||||| | ||||| ||||||
Sbjct: 2351 ttaaggggttgatatttataacatttatctccatcattataatcttgatagcaatccctc 2410
Query: 250 gcatgacggtgctggacatatttgtttgcatccttgctttcatgcccactggatggggt 308
||||| || | |||||| ||||||||||| ||||| |||||||| ||||| ||||||
Sbjct: 2411 atatgacagtccaggacatctttgtttgcattcttgccttcatgccaactggctggggt 2469
Score = 101 bits (51), Expect = 5e-019
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 360 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 419
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 2521 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 2580
Query: 420 acgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctg 479
|| || ||||| |||||||| || || |||| || || || ||||||||||| |||||
Sbjct: 2581 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 2640
Query: 480 ttcaaccaggcgttcagcagnggtctgcagatctc 514
||||||||||| |||||||| ||||||||||||||
Sbjct: 2641 ttcaaccaggccttcagcagaggtctgcagatctc 2675
>ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5910
Score = 117 bits (59), Expect = 8e-024
Identities = 194/239 (81%)
Strand = Plus / Plus
Query: 70 agagtgtgctggtttattgcttctcatgggttgtaatttttgtgattttgctcgttatga 129
||||||| ||||| |||||| | ||||||||||| || ||||| ||| |||| || ||||
Sbjct: 5414 agagtgtcctggtctattgcctgtcatgggttgtcatctttgtaattctgcttgtgatga 5473
Query: 130 agaccgtatcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttga 189
||||||| ||||| || ||| | | ||||| || || ||||| || |||||||||||||
Sbjct: 5474 agaccgtgtcagttgggaggcggaaattcagcgcggacttccaacttgtgttccggttga 5533
Query: 190 tcaagggtctgatatttataacatttacagccatcgtggtaatcctaatagcgatccctg 249
| ||||| |||||||||||||||||| ||||| | ||||| | ||||| ||||||
Sbjct: 5534 ttaaggggttgatatttataacatttatctccatcattataatcttgatagcaatccctc 5593
Query: 250 gcatgacggtgctggacatatttgtttgcatccttgctttcatgcccactggatggggt 308
||||| || | |||||| ||||||||||| ||||| |||||||| ||||| ||||||
Sbjct: 5594 atatgacagtccaggacatctttgtttgcattcttgccttcatgccaactggctggggt 5652
Score = 101 bits (51), Expect = 5e-019
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 360 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 419
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 5704 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 5763
Query: 420 acgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctg 479
|| || ||||| |||||||| || || |||| || || || ||||||||||| |||||
Sbjct: 5764 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 5823
Query: 480 ttcaaccaggcgttcagcagnggtctgcagatctc 514
||||||||||| |||||||| ||||||||||||||
Sbjct: 5824 ttcaaccaggccttcagcagaggtctgcagatctc 5858
>dbj|AK105109.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F07, full
insert sequence
Length = 1292
Score = 109 bits (55), Expect = 2e-021
Identities = 193/239 (80%)
Strand = Plus / Plus
Query: 70 agagtgtgctggtttattgcttctcatgggttgtaatttttgtgattttgctcgttatga 129
||||||| ||||| |||||| | ||||||||||| || ||||| ||| |||| || ||||
Sbjct: 441 agagtgtcctggtctattgcctgtcatgggttgtcatctttgtaattctgcttgtgatga 500
Query: 130 agaccgtatcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttga 189
||||||| ||||| || ||| | | ||||| || || ||||| || |||||||||||||
Sbjct: 501 agaccgtgtcagttgggaggcggaaattcagcgcggacttccaacttgtgttccggttga 560
Query: 190 tcaagggtctgatatttataacatttacagccatcgtggtaatcctaatagcgatccctg 249
| ||||| |||||||||||||||||| ||||| | ||||| | ||| | ||||||
Sbjct: 561 ttaaggggttgatatttataacatttatctccatcattataatcttgataacaatccctc 620
Query: 250 gcatgacggtgctggacatatttgtttgcatccttgctttcatgcccactggatggggt 308
||||| || | |||||| ||||||||||| ||||| |||||||| ||||| ||||||
Sbjct: 621 atatgacagtccaggacatctttgtttgcattcttgccttcatgccaactggctggggt 679
Score = 101 bits (51), Expect = 5e-019
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 360 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 419
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 731 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 790
Query: 420 acgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctg 479
|| || ||||| |||||||| || || |||| || || || ||||||||||| |||||
Sbjct: 791 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 850
Query: 480 ttcaaccaggcgttcagcagnggtctgcagatctc 514
||||||||||| |||||||| ||||||||||||||
Sbjct: 851 ttcaaccaggccttcagcagaggtctgcagatctc 885
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1149_C12
Length = 120743
Score = 101 bits (51), Expect = 5e-019
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 360 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 419
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 93142 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 93201
Query: 420 acgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctg 479
|| || ||||| |||||||| || || |||| || || || ||||||||||| |||||
Sbjct: 93202 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 93261
Query: 480 ttcaaccaggcgttcagcagnggtctgcagatctc 514
||||||||||| |||||||| ||||||||||||||
Sbjct: 93262 ttcaaccaggccttcagcagaggtctgcagatctc 93296
Score = 81.8 bits (41), Expect = 5e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 168 ttccagctagtgttccggttgatcaagggtctgatatttataacatttacagccatcgtg 227
||||| || |||||||||||||| ||||| |||||||||||||||||| ||||| |
Sbjct: 92872 ttccaacttgtgttccggttgattaaggggttgatatttataacatttatctccatcatt 92931
Query: 228 gtaatcctaatagcgatccctggcatgacggtgctggacatatttgtttgcatccttgct 287
||||| | ||||| |||||| ||||| || | |||||| ||||||||||| |||||
Sbjct: 92932 ataatcttgatagcaatccctcatatgacagtccaggacatctttgtttgcattcttgcc 92991
Query: 288 ttcatgcccactggatggggt 308
|||||||| ||||| ||||||
Sbjct: 92992 ttcatgccaactggctggggt 93012
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_E10
Length = 107284
Score = 101 bits (51), Expect = 5e-019
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 360 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 419
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 12973 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 13032
Query: 420 acgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctg 479
|| || ||||| |||||||| || || |||| || || || ||||||||||| |||||
Sbjct: 13033 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 13092
Query: 480 ttcaaccaggcgttcagcagnggtctgcagatctc 514
||||||||||| |||||||| ||||||||||||||
Sbjct: 13093 ttcaaccaggccttcagcagaggtctgcagatctc 13127
Score = 81.8 bits (41), Expect = 5e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 168 ttccagctagtgttccggttgatcaagggtctgatatttataacatttacagccatcgtg 227
||||| || |||||||||||||| ||||| |||||||||||||||||| ||||| |
Sbjct: 12703 ttccaacttgtgttccggttgattaaggggttgatatttataacatttatctccatcatt 12762
Query: 228 gtaatcctaatagcgatccctggcatgacggtgctggacatatttgtttgcatccttgct 287
||||| | ||||| |||||| ||||| || | |||||| ||||||||||| |||||
Sbjct: 12763 ataatcttgatagcaatccctcatatgacagtccaggacatctttgtttgcattcttgcc 12822
Query: 288 ttcatgcccactggatggggt 308
|||||||| ||||| ||||||
Sbjct: 12823 ttcatgccaactggctggggt 12843
>gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005686, whole
genome shotgun sequence
Length = 38041
Score = 101 bits (51), Expect = 5e-019
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 360 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 419
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 7497 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 7556
Query: 420 acgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctg 479
|| || ||||| |||||||| || || |||| || || || ||||||||||| |||||
Sbjct: 7557 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 7616
Query: 480 ttcaaccaggcgttcagcagnggtctgcagatctc 514
||||||||||| |||||||| ||||||||||||||
Sbjct: 7617 ttcaaccaggccttcagcagaggtctgcagatctc 7651
Score = 81.8 bits (41), Expect = 5e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 168 ttccagctagtgttccggttgatcaagggtctgatatttataacatttacagccatcgtg 227
||||| || |||||||||||||| ||||| |||||||||||||||||| ||||| |
Sbjct: 7227 ttccaacttgtgttccggttgattaaggggttgatatttataacatttatctccatcatt 7286
Query: 228 gtaatcctaatagcgatccctggcatgacggtgctggacatatttgtttgcatccttgct 287
||||| | ||||| |||||| ||||| || | |||||| ||||||||||| |||||
Sbjct: 7287 ataatcttgatagcaatccctcatatgacagtccaggacatctttgtttgcattcttgcc 7346
Query: 288 ttcatgcccactggatggggt 308
|||||||| ||||| ||||||
Sbjct: 7347 ttcatgccaactggctggggt 7367
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 101 bits (51), Expect = 5e-019
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 360 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 419
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 1657700 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 1657759
Query: 420 acgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctg 479
|| || ||||| |||||||| || || |||| || || || ||||||||||| |||||
Sbjct: 1657760 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 1657819
Query: 480 ttcaaccaggcgttcagcagnggtctgcagatctc 514
||||||||||| |||||||| ||||||||||||||
Sbjct: 1657820 ttcaaccaggccttcagcagaggtctgcagatctc 1657854
Score = 81.8 bits (41), Expect = 5e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 168 ttccagctagtgttccggttgatcaagggtctgatatttataacatttacagccatcgtg 227
||||| || |||||||||||||| ||||| |||||||||||||||||| ||||| |
Sbjct: 1657430 ttccaacttgtgttccggttgattaaggggttgatatttataacatttatctccatcatt 1657489
Query: 228 gtaatcctaatagcgatccctggcatgacggtgctggacatatttgtttgcatccttgct 287
||||| | ||||| |||||| ||||| || | |||||| ||||||||||| |||||
Sbjct: 1657490 ataatcttgatagcaatccctcatatgacagtccaggacatctttgtttgcattcttgcc 1657549
Query: 288 ttcatgcccactggatggggt 308
|||||||| ||||| ||||||
Sbjct: 1657550 ttcatgccaactggctggggt 1657570
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 101 bits (51), Expect = 5e-019
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 360 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 419
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 22451606 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 22451665
Query: 420 acgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctg 479
|| || ||||| |||||||| || || |||| || || || ||||||||||| |||||
Sbjct: 22451666 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 22451725
Query: 480 ttcaaccaggcgttcagcagnggtctgcagatctc 514
||||||||||| |||||||| ||||||||||||||
Sbjct: 22451726 ttcaaccaggccttcagcagaggtctgcagatctc 22451760
Score = 81.8 bits (41), Expect = 5e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 168 ttccagctagtgttccggttgatcaagggtctgatatttataacatttacagccatcgtg 227
||||| || |||||||||||||| ||||| |||||||||||||||||| ||||| |
Sbjct: 22451336 ttccaacttgtgttccggttgattaaggggttgatatttataacatttatctccatcatt 22451395
Query: 228 gtaatcctaatagcgatccctggcatgacggtgctggacatatttgtttgcatccttgct 287
||||| | ||||| |||||| ||||| || | |||||| ||||||||||| |||||
Sbjct: 22451396 ataatcttgatagcaatccctcatatgacagtccaggacatctttgtttgcattcttgcc 22451455
Query: 288 ttcatgcccactggatggggt 308
|||||||| ||||| ||||||
Sbjct: 22451456 ttcatgccaactggctggggt 22451476
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 101 bits (51), Expect = 5e-019
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 360 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 419
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 35904670 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 35904729
Query: 420 acgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctg 479
|| || ||||| |||||||| || || |||| || || || ||||||||||| |||||
Sbjct: 35904730 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 35904789
Query: 480 ttcaaccaggcgttcagcagnggtctgcagatctc 514
||||||||||| |||||||| ||||||||||||||
Sbjct: 35904790 ttcaaccaggccttcagcagaggtctgcagatctc 35904824
Score = 81.8 bits (41), Expect = 5e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 168 ttccagctagtgttccggttgatcaagggtctgatatttataacatttacagccatcgtg 227
||||| || |||||||||||||| ||||| |||||||||||||||||| ||||| |
Sbjct: 35904400 ttccaacttgtgttccggttgattaaggggttgatatttataacatttatctccatcatt 35904459
Query: 228 gtaatcctaatagcgatccctggcatgacggtgctggacatatttgtttgcatccttgct 287
||||| | ||||| |||||| ||||| || | |||||| ||||||||||| |||||
Sbjct: 35904460 ataatcttgatagcaatccctcatatgacagtccaggacatctttgtttgcattcttgcc 35904519
Query: 288 ttcatgcccactggatggggt 308
|||||||| ||||| ||||||
Sbjct: 35904520 ttcatgccaactggctggggt 35904540
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 101 bits (51), Expect = 5e-019
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 360 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 419
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 35822427 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 35822486
Query: 420 acgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctg 479
|| || ||||| |||||||| || || |||| || || || ||||||||||| |||||
Sbjct: 35822487 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 35822546
Query: 480 ttcaaccaggcgttcagcagnggtctgcagatctc 514
||||||||||| |||||||| ||||||||||||||
Sbjct: 35822547 ttcaaccaggccttcagcagaggtctgcagatctc 35822581
Score = 81.8 bits (41), Expect = 5e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 168 ttccagctagtgttccggttgatcaagggtctgatatttataacatttacagccatcgtg 227
||||| || |||||||||||||| ||||| |||||||||||||||||| ||||| |
Sbjct: 35822157 ttccaacttgtgttccggttgattaaggggttgatatttataacatttatctccatcatt 35822216
Query: 228 gtaatcctaatagcgatccctggcatgacggtgctggacatatttgtttgcatccttgct 287
||||| | ||||| |||||| ||||| || | |||||| ||||||||||| |||||
Sbjct: 35822217 ataatcttgatagcaatccctcatatgacagtccaggacatctttgtttgcattcttgcc 35822276
Query: 288 ttcatgcccactggatggggt 308
|||||||| ||||| ||||||
Sbjct: 35822277 ttcatgccaactggctggggt 35822297
>dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0499E08, ***
SEQUENCING IN PROGRESS ***
Length = 85150
Score = 50.1 bits (25), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 462 ttccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcagatctcccg 517
|||||||| ||| |||| ||||||||||| |||||| | || || |||||||||||
Sbjct: 38809 ttccagacgaggctgctcttcaaccaggccttcagccgaggcctccagatctcccg 38754
>gb|AACV01013161.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013161, whole
genome shotgun sequence
Length = 8989
Score = 50.1 bits (25), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 462 ttccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcagatctcccg 517
|||||||| ||| |||| ||||||||||| |||||| | || || |||||||||||
Sbjct: 1372 ttccagacgaggctgctcttcaaccaggccttcagccgaggcctccagatctcccg 1427
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
Length = 136159
Score = 50.1 bits (25), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 462 ttccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcagatctcccg 517
|||||||| ||| |||| ||||||||||| |||||| | || || |||||||||||
Sbjct: 11278 ttccagacgaggctgctcttcaaccaggccttcagccgaggcctccagatctcccg 11223
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0019L07
Length = 131650
Score = 50.1 bits (25), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 462 ttccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcagatctcccg 517
|||||||| ||| |||| ||||||||||| |||||| | || || |||||||||||
Sbjct: 121672 ttccagacgaggctgctcttcaaccaggccttcagccgaggcctccagatctcccg 121617
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 50.1 bits (25), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 462 ttccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcagatctcccg 517
|||||||| ||| |||| ||||||||||| |||||| | || || |||||||||||
Sbjct: 3910671 ttccagacgaggctgctcttcaaccaggccttcagccgaggcctccagatctcccg 3910616
>gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001413, whole
genome shotgun sequence
Length = 32302
Score = 44.1 bits (22), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 475 tgctgttcaaccaggcgttcagcagnggtctgcagatctcc 515
|||| ||||||||||| |||||| | || ||||||||||||
Sbjct: 6774 tgctcttcaaccaggccttcagccgggggctgcagatctcc 6734
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 44.1 bits (22), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 475 tgctgttcaaccaggcgttcagcagnggtctgcagatctcc 515
|||| ||||||||||| |||||| | || ||||||||||||
Sbjct: 19378526 tgctcttcaaccaggccttcagccgggggctgcagatctcc 19378486
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 44.1 bits (22), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 475 tgctgttcaaccaggcgttcagcagnggtctgcagatctcc 515
|||| ||||||||||| |||||| | || ||||||||||||
Sbjct: 5549 tgctcttcaaccaggccttcagccgggggctgcagatctcc 5589
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 44.1 bits (22), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 475 tgctgttcaaccaggcgttcagcagnggtctgcagatctcc 515
|||| ||||||||||| |||||| | || ||||||||||||
Sbjct: 2296758 tgctcttcaaccaggccttcagccgggggctgcagatctcc 2296718
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1619_F12
Length = 133028
Score = 44.1 bits (22), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 475 tgctgttcaaccaggcgttcagcagnggtctgcagatctcc 515
|||| ||||||||||| |||||| | || ||||||||||||
Sbjct: 119430 tgctcttcaaccaggccttcagccgggggctgcagatctcc 119390
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1029_F04
Length = 141834
Score = 44.1 bits (22), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 475 tgctgttcaaccaggcgttcagcagnggtctgcagatctcc 515
|||| ||||||||||| |||||| | || ||||||||||||
Sbjct: 27814 tgctcttcaaccaggccttcagccgggggctgcagatctcc 27774
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 44.1 bits (22), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 475 tgctgttcaaccaggcgttcagcagnggtctgcagatctcc 515
|||| ||||||||||| |||||| | || ||||||||||||
Sbjct: 2430189 tgctcttcaaccaggccttcagccgggggctgcagatctcc 2430149
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 44.1 bits (22), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 475 tgctgttcaaccaggcgttcagcagnggtctgcagatctcc 515
|||| ||||||||||| |||||| | || ||||||||||||
Sbjct: 19055312 tgctcttcaaccaggccttcagccgggggctgcagatctcc 19055272
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 44.1 bits (22), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 475 tgctgttcaaccaggcgttcagcagnggtctgcagatctcc 515
|||| ||||||||||| |||||| | || ||||||||||||
Sbjct: 19299809 tgctcttcaaccaggccttcagccgggggctgcagatctcc 19299769
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 608,326
Number of Sequences: 438736
Number of extensions: 608326
Number of successful extensions: 3373
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3220
Number of HSP's gapped (non-prelim): 136
length of query: 710
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 689
effective length of database: 2,791,206,460
effective search space: 1923141250940
effective search space used: 1923141250940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)