BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418861.2.2
(1617 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA 944 0.0
dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA... 930 0.0
gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloar... 896 0.0
dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA... 835 0.0
gb|CB671826.1|CB671826 OSJNEe05J06.f OSJNEe Oryza sativa (j... 694 0.0
gb|CF323745.1|CF323745 HDN--04-K15.g1 OsHDAC1-overexpressin... 505 e-140
gb|CF329662.1|CF329662 NACL--05-B03.b1 Rice callus plasmid ... 456 e-125
gb|C25986.1|C25986 C25986 Rice callus cDNA Oryza sativa (ja... 367 1e-098
gb|AU184519.1|AU184519 AU184519 Rice root Oryza sativa (jap... 361 8e-097
gb|AU032204.1|AU032204 AU032204 Rice root Oryza sativa (jap... 311 6e-082
gb|C73760.2|C73760 C73760 Rice panicle (longer than 10cm) O... 250 2e-063
gb|AACV01015390.1| Oryza sativa (japonica cultivar-group) c... 220 2e-054
dbj|AP003943.3| Oryza sativa (japonica cultivar-group) geno... 220 2e-054
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 220 2e-054
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 220 2e-054
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 220 2e-054
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 220 2e-054
gb|C73768.2|C73768 C73768 Rice panicle (longer than 10cm) O... 216 3e-053
gb|CZ555321.1|CZ555321 M0027188 AS_TRIM_TDNA_B1 Oryza sativ... 198 7e-048
gb|AU092218.1|AU092218 AU092218 Rice callus Oryza sativa (j... 141 1e-030
gb|D24567.1|D24567 RICR2178A Rice root Oryza sativa (japoni... 109 5e-021
gb|CZ555779.1|CZ555779 M0028813 AS_TRIM_TDNA_B1 Oryza sativ... 107 2e-020
gb|CF329663.1|CF329663 NACL--05-B03.g1 Rice callus plasmid ... 60 4e-006
gb|CF329172.1|CF329172 NACL--04-G10.b1 Rice callus plasmid ... 58 2e-005
gb|CF329173.1|CF329173 NACL--04-G10.g1 Rice callus plasmid ... 58 2e-005
ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA 56 6e-005
gb|AACV01016034.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
dbj|AP003802.2| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 54 2e-004
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|AQ509533.1|AQ509533 nbxb0096D15f CUGI Rice BAC Library O... 52 0.001
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 52 0.001
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 52 0.001
gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) c... 52 0.001
gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) c... 52 0.001
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 52 0.001
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 52 0.001
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 52 0.001
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|AC135599.3| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|AU173325.1|AU173325 AU173325 Rice root Oryza sativa (jap... 46 0.060
gb|AU184520.1|AU184520 AU184520 Rice root Oryza sativa (jap... 46 0.060
dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chro... 46 0.060
dbj|AK108621.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.060
dbj|AP004133.3| Oryza sativa (japonica cultivar-group) geno... 46 0.060
gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) c... 46 0.060
ref|XM_466994.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.060
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 46 0.060
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.060
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.060
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.060
>ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1525
Score = 944 bits (476), Expect = 0.0
Identities = 872/1004 (86%)
Strand = Plus / Minus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttctttccgccctctac 448
|||||| ||||| | |||||||||||| ||||||||||| |||||||| || || || ||
Sbjct: 1126 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttcttgccaccttcgac 1067
Query: 449 cagcccttctgcagccttctccaggaaattagagaccctctcactgccctgcggagcaag 508
|| ||||| || |||||||| | || ||||| ||||| ||||| || || || |||||
Sbjct: 1066 gagaccttcagctgccttctctaaaaagttagataccctttcacttccttgtggggcaag 1007
Query: 509 accaacgtactccagggccttgaccattgtgcgggtaatcatgcgtcccacagaggtcaa 568
|| ||||| |||| ||||| ||||||||||| ||||| || ||||||| ||||
Sbjct: 1006 gccgacgtattccaatgccttcaccattgtgcgagtaattgcacgccccacagtagtcag 947
Query: 569 acggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggcaagggaga 628
|||||||||||||| ||| || ||||||||||||||||||| ||||||||| | || ||
Sbjct: 946 acggaagctactcaaggaaaaccggcttggatccaagggcaggtaccaaggaaccgggga 887
Query: 629 atcttcagcaagatccttatcccaaacaacctcaaacccggcgtcttttactgcctggag 688
|||||||||||| || |||||||||| |||||||||||| || |||||| | || || ||
Sbjct: 886 atcttcagcaaggtctttatcccaaataacctcaaacccagcatcttttgcagcttgaag 827
Query: 689 acattgccgagtgcttctgatatctggcaggccattgccaagctcaatttcatccttgat 748
|||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 826 acattgttgagtgcttcggatatctggcaggccattgccaagctcgatttcatccttgat 767
Query: 749 ccttttgtgggttgcattgttaggatcatagtgatccgtaatgcaccactcgtacacggc 808
||| ||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||| ||
Sbjct: 766 cctcttgtgtgttgcattgttcggttcatagtgatcagtaatacaccactcatacacagc 707
Query: 809 aaagcactggccaggcttcaacacacgatatatctccttgtagcaaccaactggatcagg 868
||| ||||||||||||||||| |||||||| |||||||| ||||| ||||| ||||||||
Sbjct: 706 aaaacactggccaggcttcaatacacgatagatctccttatagcagccaaccggatcagg 647
Query: 869 tgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggcat 928
||| || ||||||||||||||||| || ||||||||||||||||| ||| ||||||||
Sbjct: 646 tgcgtggcatgttgcctcaatggcatagacagcatcaaaagtgttatcagaaaacggcat 587
Query: 929 cttcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaacggttgag 988
|||||||||||| ||||| ||||| || || |||||||||| |||||||| || || ||
Sbjct: 586 cttcatgaagtctgccttcacaaagtcgcaagttccactaactcctgctacccgattaag 527
Query: 989 ctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagct 1048
|||||||||||| ||||||||||| || ||||| |||||||| || ||||||| ||||
Sbjct: 526 ctcctttcccctagttatctggtactcattgttgttcaatccagtgactgaagccaagct 467
Query: 1049 aaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcat 1108
|||| | ||||||||||| |||||||| ||||||||||| || || || |||||||||||
Sbjct: 466 aaatttggcaatttctcttagtggtccgcctattccacaaccgacgtccaaaaccttcat 407
Query: 1109 tcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacg 1168
||||||||||| ||||| || ||||||||||| |||||||||||||| |||||||||||
Sbjct: 406 tcctggtttcactccaagctgaagggcaagaaagtgctcatgtcgcttaatgctttcacg 347
Query: 1169 taaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcata 1228
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tagggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcata 287
Query: 1229 gaagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgc 1288
|||||| ||||||||||||||||||||||||||||| || || ||||||||||| |||||
Sbjct: 286 gaagctggtggcaagatcatagtatttattaaccatgtctgtgtagttggactttcttgc 227
Query: 1289 ttcctccttccctccatagtatccatgatatttctcatactcatcgacggccgacttgac 1348
||| || || ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 226 ttcttcttttcctccatagtatccatggtatttctcatactcatcgacagccgacttgac 167
Query: 1349 ttccaccttgttgatcttccctccgaggccagaagcaagatcca 1392
|| ||||| |||||||||| ||||| ||||| ||||||||||
Sbjct: 166 ctcatccttggtgatcttccccccgagtccagatgcaagatcca 123
>dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149L23, full
insert sequence
Length = 1526
Score = 930 bits (469), Expect = 0.0
Identities = 872/1005 (86%), Gaps = 1/1005 (0%)
Strand = Plus / Minus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttctttccgccctctac 448
|||||| ||||| | |||||||||||| ||||||||||| |||||||| || || || ||
Sbjct: 1127 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttcttgccaccttcgac 1068
Query: 449 cagcccttctgcagccttctccaggaaattagagaccctctcactgccctgcggagcaag 508
|| ||||| || |||||||| | || ||||| ||||| ||||| || || || |||||
Sbjct: 1067 gagaccttcagctgccttctctaaaaagttagataccctttcacttccttgtggggcaag 1008
Query: 509 accaacgtactccagggccttgaccattgtgcgggtaatcatgcgtcccacagaggtcaa 568
|| ||||| |||| ||||| ||||||||||| ||||| || ||||||| ||||
Sbjct: 1007 gccgacgtattccaatgccttcaccattgtgcgagtaattgcacgccccacagtagtcag 948
Query: 569 acggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggcaagggaga 628
|||||||||||||| ||| || ||||||||||||||||||| ||||||||| | || ||
Sbjct: 947 acggaagctactcaaggaaaaccggcttggatccaagggcaggtaccaaggaaccgggga 888
Query: 629 atcttcagcaagatccttatcccaaacaacctcaaacccggcgtcttttactgcctggag 688
|||||||||||| || |||||||||| |||||||||||| || |||||| | || || ||
Sbjct: 887 atcttcagcaaggtctttatcccaaataacctcaaacccagcatcttttgcagcttgaag 828
Query: 689 acattgccgagtgcttctgatatctggcaggccattgccaagctcaatttcatccttgat 748
|||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 827 acattgttgagtgcttcggatatctggcaggccattgccaagctcgatttcatccttgat 768
Query: 749 ccttttgtgggttgcattgttaggatcatagtgatccgtaatgcaccactcgtacacggc 808
||| ||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||| ||
Sbjct: 767 cctcttgtgtgttgcattgttcggttcatagtgatcagtaatacaccactcatacacagc 708
Query: 809 aaagcactggccaggcttcaacacacgatatatctccttgtagcaaccaactggatcagg 868
||| ||||||||||||||||| |||||||| |||||||| ||||| ||||| ||||||||
Sbjct: 707 aaaacactggccaggcttcaatacacgatagatctccttatagcagccaaccggatcagg 648
Query: 869 tgcatgacatgttgcctcaatgg-cgtaaacagcatcaaaagtgttgtcatcgaacggca 927
||| || |||||||||||||||| | || ||||||||||||||||| ||| |||||||
Sbjct: 647 tgcgtggcatgttgcctcaatgggcatagacagcatcaaaagtgttatcagaaaacggca 588
Query: 928 tcttcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaacggttga 987
||||||||||||| ||||| ||||| || || |||||||||| |||||||| || || |
Sbjct: 587 tcttcatgaagtctgccttcacaaagtcgcaagttccactaactcctgctacccgattaa 528
Query: 988 gctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagc 1047
||||||||||||| ||||||||||| || ||||| |||||||| || ||||||| |||
Sbjct: 527 gctcctttcccctagttatctggtactcattgttgttcaatccagtgactgaagccaagc 468
Query: 1048 taaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttca 1107
||||| | ||||||||||| |||||||| ||||||||||| || || || ||||||||||
Sbjct: 467 taaatttggcaatttctcttagtggtccgcctattccacaaccgacgtccaaaaccttca 408
Query: 1108 ttcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcac 1167
|||||||||||| ||||| || ||||||||||| |||||||||||||| ||||||||||
Sbjct: 407 ttcctggtttcactccaagctgaagggcaagaaagtgctcatgtcgcttaatgctttcac 348
Query: 1168 gtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcat 1227
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gtagggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcat 288
Query: 1228 agaagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttg 1287
||||||| ||||||||||||||||||||||||||||| || || ||||||||||| ||||
Sbjct: 287 agaagctggtggcaagatcatagtatttattaaccatgtctgtgtagttggactttcttg 228
Query: 1288 cttcctccttccctccatagtatccatgatatttctcatactcatcgacggccgacttga 1347
|||| || || ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 227 cttcttcttttcctccatagtatccatggtatttctcatactcatcgacagccgacttga 168
Query: 1348 cttccaccttgttgatcttccctccgaggccagaagcaagatcca 1392
| || ||||| |||||||||| ||||| ||||| ||||||||||
Sbjct: 167 cctcatccttggtgatcttccccccgagtccagatgcaagatcca 123
>gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloartenol-C24-methyltransferase mRNA,
complete cds
Length = 1629
Score = 896 bits (452), Expect = 0.0
Identities = 764/868 (88%)
Strand = Plus / Minus
Query: 525 gccttgaccattgtgcgggtaatcatgcgtcccacagaggtcaaacggaagctactcagg 584
||||| ||||||||||| ||||| || ||||||| |||| |||||||||||||| |
Sbjct: 1064 gccttcaccattgtgcgagtaattgcacgccccacagtagtcagacggaagctactcaag 1005
Query: 585 gagaatcggcttggatccaagggcaagtaccaaggcaagggagaatcttcagcaagatcc 644
|| || ||||||||||||||||||| ||||||||| | || |||||||||||||| ||
Sbjct: 1004 gaaaaccggcttggatccaagggcaggtaccaaggaaccggggaatcttcagcaaggtct 945
Query: 645 ttatcccaaacaacctcaaacccggcgtcttttactgcctggagacattgccgagtgctt 704
|||||||||| |||||||||||| || |||||| | || || |||||||| ||||||||
Sbjct: 944 ttatcccaaataacctcaaacccagcatcttttgcagcttgaagacattgttgagtgctt 885
Query: 705 ctgatatctggcaggccattgccaagctcaatttcatccttgatccttttgtgggttgca 764
| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 884 cggatatctggcaggccattgccaagctcgatttcatccttgatcctcttgtgtgttgca 825
Query: 765 ttgttaggatcatagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggc 824
||||| || ||||||||||| ||||| |||||||| ||||| ||||| ||||||||||||
Sbjct: 824 ttgttcggttcatagtgatcagtaatacaccactcatacacagcaaaacactggccaggc 765
Query: 825 ttcaacacacgatatatctccttgtagcaaccaactggatcaggtgcatgacatgttgcc 884
||||| |||||||| |||||||| ||||| ||||| ||||||||||| || |||||||||
Sbjct: 764 ttcaatacacgatagatctccttatagcagccaaccggatcaggtgcgtggcatgttgcc 705
Query: 885 tcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgcc 944
|||||||| || ||||||||||||||||| ||| |||||||||||||||||||| |||
Sbjct: 704 tcaatggcatagacagcatcaaaagtgttatcagaaaacggcatcttcatgaagtctgcc 645
Query: 945 ttgacaaaatcacatgttccactaattcctgctaaacggttgagctcctttcccctggtt 1004
|| ||||| || || |||||||||| |||||||| || || |||||||||||||| |||
Sbjct: 644 ttcacaaagtcgcaagttccactaactcctgctacccgattaagctcctttcccctagtt 585
Query: 1005 atctggtattcgttgttattcaatccggtaactgaagttgagctaaatcttgcaatttct 1064
|||||||| || ||||| |||||||| || ||||||| |||||||| | |||||||||
Sbjct: 584 atctggtactcattgttgttcaatccagtgactgaagccaagctaaatttggcaatttct 525
Query: 1065 ctcagtggtccacctattccacagcccacatctaaaaccttcattcctggtttcaaacca 1124
|| |||||||| ||||||||||| || || || |||||||||||||||||||||| |||
Sbjct: 524 cttagtggtccgcctattccacaaccgacgtccaaaaccttcattcctggtttcactcca 465
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
|| || ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 464 agctgaagggcaagaaagtgctcatgtcgcttaatgctttcacgtagggattctccattc 405
Query: 1185 catctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaaga 1244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 404 catctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctggtggcaaga 345
Query: 1245 tcatagtatttattaaccatatcagtatagttggacttccttgcttcctccttccctcca 1304
|||||||||||||||||||| || || ||||||||||| |||||||| || || ||||||
Sbjct: 344 tcatagtatttattaaccatgtctgtgtagttggactttcttgcttcttcttttcctcca 285
Query: 1305 tagtatccatgatatttctcatactcatcgacggccgacttgacttccaccttgttgatc 1364
||||||||||| |||||||||||||||||||| ||||||||||| || ||||| |||||
Sbjct: 284 tagtatccatggtatttctcatactcatcgacagccgacttgacctcatccttggtgatc 225
Query: 1365 ttccctccgaggccagaagcaagatcca 1392
||||| ||||| ||||| ||||||||||
Sbjct: 224 ttccccccgagtccagatgcaagatcca 197
Score = 60.0 bits (30), Expect = 4e-006
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttctttccgccctctac 448
|||||| ||||| | |||||||||||| ||||||||||| |||||||| || || || ||
Sbjct: 1215 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttcttgccaccttcgac 1156
Query: 449 cagcccttctgcagccttctccaggaaattagagaccctctcactgccctgcggagcaag 508
|| ||||| || |||||||| | || ||||| ||||| ||||| || || || |||||
Sbjct: 1155 gagaccttcagctgccttctctaaaaagttagataccctttcacttccttgtggggcaag 1096
Query: 509 accaacgtactcca 522
|| ||||| ||||
Sbjct: 1095 gccgacgtattcca 1082
>dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D19, full
insert sequence
Length = 2883
Score = 835 bits (421), Expect = 0.0
Identities = 813/941 (86%), Gaps = 2/941 (0%)
Strand = Plus / Minus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttctttccgccctctac 448
|||||| ||||| | |||||||||||| ||||||||||| |||||||| || || || ||
Sbjct: 2583 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttcttgccaccttcgac 2524
Query: 449 cagcccttctgcagccttctccaggaaattagagaccctctcactgccctgcggagcaag 508
|| ||||| || |||||||| | || ||||| ||||| ||||| || || || |||||
Sbjct: 2523 gagaccttcagctgccttctctaaaaagttagataccctttcacttccttgtggggcaag 2464
Query: 509 accaacgtactccagggccttgaccattgtgcgggtaatcatgcgtcccacagaggtcaa 568
|| ||||| |||| ||||| ||||||||||| ||||| || ||||||| ||||
Sbjct: 2463 gccgacgtattccaatgccttcaccattgtgcgagtaattgcacgccccacagtagtcag 2404
Query: 569 acggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggcaagggaga 628
|||||||||||||| ||| || ||||||||||||||||||| ||||||||| | || ||
Sbjct: 2403 acggaagctactcaaggaaaaccggcttggatccaagggcaggtaccaaggaaccgggga 2344
Query: 629 atcttcagcaagatccttatcccaaacaacctcaaacccggcgtcttttactgcctggag 688
|||||||||||| || |||||||||| |||||||||||| || |||||| | || || ||
Sbjct: 2343 atcttcagcaaggtctttatcccaaataacctcaaacccagcatcttttgcagcttgaag 2284
Query: 689 acattgccgagtgcttctgatatctggcaggcca-ttgccaagctcaatttcatccttga 747
|||| | ||||||||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 2283 acatggttgagtgcttcggatatctggcaggccccttgccaagctcgatttcatccttga 2224
Query: 748 tccttttgtgggttgcattgttaggatcatagtgatccgtaatgcaccactcgtacacgg 807
|||| ||||| || |||||||| || ||||||||||| ||||| |||||||| ||||| |
Sbjct: 2223 tcctcttgtgtgt-gcattgttcggttcatagtgatcagtaatacaccactcatacacag 2165
Query: 808 caaagcactggccaggcttcaacacacgatatatctccttgtagcaaccaactggatcag 867
|||| ||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||
Sbjct: 2164 caaaacactggccaggcttcaatacacgatagatctccttatagcagccaaccggatcag 2105
Query: 868 gtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggca 927
|||| || ||||||||||||||||| || ||||||||||||||||| ||| |||||||
Sbjct: 2104 gtgcgtggcatgttgcctcaatggcatagacagcatcaaaagtgttatcagaaaacggca 2045
Query: 928 tcttcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaacggttga 987
||||||||||||| ||||| ||||| || || |||||||||| |||||||| || || |
Sbjct: 2044 tcttcatgaagtctgccttcacaaagtcgcaagttccactaactcctgctacccgattaa 1985
Query: 988 gctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagc 1047
||||||||||||| ||||||||||| || ||||| |||||||| || ||||||| |||
Sbjct: 1984 gctcctttcccctagttatctggtactcattgttgttcaatccagtgactgaagccaagc 1925
Query: 1048 taaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttca 1107
||||| | ||||||||||| |||||||| ||||||||||| || || || ||||||||||
Sbjct: 1924 taaatttggcaatttctcttagtggtccgcctattccacaaccgacgtccaaaaccttca 1865
Query: 1108 ttcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcac 1167
|||||||||||| ||||| || ||||||||||| |||||||||||||| ||||||||||
Sbjct: 1864 ttcctggtttcactccaagctgaagggcaagaaagtgctcatgtcgcttaatgctttcac 1805
Query: 1168 gtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcat 1227
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1804 gtagggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcat 1745
Query: 1228 agaagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttg 1287
||||||| ||||||||||||||||||||||||||||| || || ||||||||||| ||||
Sbjct: 1744 agaagctggtggcaagatcatagtatttattaaccatgtctgtgtagttggactttcttg 1685
Query: 1288 cttcctccttccctccatagtatccatgatatttctcatac 1328
|||| || || ||||||||||||||||| ||||||||||||
Sbjct: 1684 cttcttcttttcctccatagtatccatggtatttctcatac 1644
Score = 69.9 bits (35), Expect = 4e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
||||||||||| ||||||||||| || ||||| |||||||||| ||||| ||||| |||
Sbjct: 673 tactcatcgacagccgacttgacctcatccttggtgatcttccccccgagtccagatgca 614
Query: 1386 agatcca 1392
|||||||
Sbjct: 613 agatcca 607
>gb|CB671826.1|CB671826 OSJNEe05J06.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05J06 5', mRNA sequence
Length = 670
Score = 694 bits (350), Expect = 0.0
Identities = 563/634 (88%)
Strand = Plus / Minus
Query: 759 gttgcattgttaggatcatagtgatccgtaatgcaccactcgtacacggcaaagcactgg 818
||||||||||| || ||||||||||| ||||| |||||||| ||||| ||||| ||||||
Sbjct: 669 gttgcattgttcggttcatagtgatcagtaatacaccactcatacacagcaaaacactgg 610
Query: 819 ccaggcttcaacacacgatatatctccttgtagcaaccaactggatcaggtgcatgacat 878
||||||||||| |||||||| |||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 609 ccaggcttcaatacacgatagatctccttatagcagccaaccggatcaggtgcgtggcat 550
Query: 879 gttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggcatcttcatgaag 938
|||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 549 gttgcctcaatggcatagacagcatcaaaagtgttatcagaaaacggcatcttcatgaag 490
Query: 939 tccgccttgacaaaatcacatgttccactaattcctgctaaacggttgagctcctttccc 998
|| ||||| ||||| || || |||||||||| |||||||| || || ||||||||||||
Sbjct: 489 tctgccttcacaaagtcgcaagttccactaactcctgctacccgattaagctcctttccc 430
Query: 999 ctggttatctggtattcgttgttattcaatccggtaactgaagttgagctaaatcttgca 1058
|| ||||||||||| || ||||| |||||||| || ||||||| |||||||| | |||
Sbjct: 429 ctagttatctggtactcattgttgttcaatccagtgactgaagccaagctaaatttggca 370
Query: 1059 atttctctcagtggtccacctattccacagcccacatctaaaaccttcattcctggtttc 1118
|||||||| |||||||| ||||||||||| || || || |||||||||||||||||||||
Sbjct: 369 atttctcttagtggtccgcctattccacaaccgacgtccaaaaccttcattcctggtttc 310
Query: 1119 aaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattct 1178
| ||||| || ||||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct: 309 actccaagctgaagggcaagaaagtgctcatgtcgcttaatgctttcacgtagggattct 250
Query: 1179 ccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtg 1238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 249 ccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctggtg 190
Query: 1239 gcaagatcatagtatttattaaccatatcagtatagttggacttccttgcttcctccttc 1298
|||||||||||||||||||||||||| || || ||||||||||| |||||||| || ||
Sbjct: 189 gcaagatcatagtatttattaaccatgtctgtgtagttggactttcttgcttcttctttt 130
Query: 1299 cctccatagtatccatgatatttctcatactcatcgacggccgacttgacttccaccttg 1358
||||||||||||||||| |||||||||||||||||||| ||||||||||| || |||||
Sbjct: 129 cctccatagtatccatggtatttctcatactcatcgacagccgacttgacctcatccttg 70
Query: 1359 ttgatcttccctccgaggccagaagcaagatcca 1392
|||||||||| ||||| ||||| ||||||||||
Sbjct: 69 gtgatcttccccccgagtccagatgcaagatcca 36
>gb|CF323745.1|CF323745 HDN--04-K15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-K15, mRNA sequence
Length = 619
Score = 505 bits (255), Expect = e-140
Identities = 412/463 (88%), Gaps = 1/463 (0%)
Strand = Plus / Minus
Query: 931 tcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaacggttgagct 990
|||||||||| ||||| ||||| || || |||||||||| |||||||| || || ||||
Sbjct: 619 tcatgaagtctgccttcacaaagtcgcaagttccactaactcctgctacccgattaagct 560
Query: 991 cctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagctaa 1050
|||||||||| ||||||||||| || ||||| |||||||| || ||||||| ||||||
Sbjct: 559 cctttcccctagttatctggtactcattgttgttcaatccagtgactgaagccaagctaa 500
Query: 1051 atcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcattc 1110
|| | ||||||||||| |||||||| ||||||||||| || || || |||||||||||||
Sbjct: 499 atttggcaatttctcttagtggtccgcctattccacaaccgacgtccaaaaccttcattc 440
Query: 1111 ctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgta 1170
||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 439 ctggtttcactccaagctgaagggcaagaaaatgctcatgtcgcttaatgctttcacgta 380
Query: 1171 aggattctccattccatctgtgagcaaagtggaaggattcaccccaa-ccatactcatag 1229
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 379 gggattctccattccatctgtgagcaaagtggaaggattcaccccaacccatactcatag 320
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
||||| ||||||||||||||||||||||||||||| || || ||||||||||| ||||||
Sbjct: 319 aagctggtggcaagatcatagtatttattaaccatgtctgtgtagttggactttcttgct 260
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggccgacttgact 1349
|| || || ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 259 tcttcttttcctccatagtatccatggtatttctcatactcatcgacagccgacttgacc 200
Query: 1350 tccaccttgttgatcttccctccgaggccagaagcaagatcca 1392
|| ||||| |||||||||| ||||| ||||| ||||||||||
Sbjct: 199 tcatccttggtgatcttccccccgagtccagatgcaagatcca 157
>gb|CF329662.1|CF329662 NACL--05-B03.b1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--05-B03, mRNA
sequence
Length = 560
Score = 456 bits (230), Expect = e-125
Identities = 455/530 (85%)
Strand = Plus / Minus
Query: 477 ttagagaccctctcactgccctgcggagcaagaccaacgtactccagggccttgaccatt 536
||||| ||||| ||||| || || || ||||| || ||||| |||| ||||| ||||||
Sbjct: 554 ttagataccctttcacttccttgtggggcaaggccgacgtattccaatgccttcaccatt 495
Query: 537 gtgcgggtaatcatgcgtcccacagaggtcaaacggaagctactcagggagaatcggctt 596
||||| ||||| || ||||||| |||| |||||||||||||| ||| || ||||||
Sbjct: 494 gtgcgagtaattgcacgccccacagtagtcagacggaagctactcaaggaaaaccggctt 435
Query: 597 ggatccaagggcaagtaccaaggcaagggagaatcttcagcaagatccttatcccaaaca 656
||||||||||||| ||||||||| | || |||||||||||||| || |||||||||| |
Sbjct: 434 ggatccaagggcaggtaccaaggaaccggggaatcttcagcaaggtctttatcccaaata 375
Query: 657 acctcaaacccggcgtcttttactgcctggagacattgccgagtgcttctgatatctggc 716
||||||||||| || |||||| | || || |||||||| ||||||||| ||||||||||
Sbjct: 374 acctcaaacccagcatcttttgcagcttgaagacattgttgagtgcttcggatatctggc 315
Query: 717 aggccattgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatca 776
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || |||
Sbjct: 314 aggccattgccaagctcgatttcatccttgatcctcttgtgtgttgcattgttcggttca 255
Query: 777 tagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaacacacga 836
|||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 254 tagtgatcagtaatacaccactcatacacagcaaaacactggccaggcttcaatacacga 195
Query: 837 tatatctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatggcgtaa 896
|| |||||||| ||||| ||||| ||||||||||| || ||||||||||||||||| ||
Sbjct: 194 tagatctccttatagcagccaaccggatcaggtgcgtggcatgttgcctcaatggcatag 135
Query: 897 acagcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgccttgacaaaatca 956
||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||| ||
Sbjct: 134 acagcatcaaaagtgttatcagaaaacggcatcttcatgaagtctgccttcacaaagtcg 75
Query: 957 catgttccactaattcctgctaaacggttgagctcctttcccctggttat 1006
|| |||||||||| |||||||| || || |||||||||||||| |||||
Sbjct: 74 caagttccactaactcctgctacccgattaagctcctttcccctagttat 25
>gb|C25986.1|C25986 C25986 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C11423_1A, mRNA sequence
Length = 417
Score = 367 bits (185), Expect = 1e-098
Identities = 329/373 (88%), Gaps = 3/373 (0%)
Strand = Plus / Minus
Query: 921 aacggcatcttcatgaagtccgccttgacaaaatcacatgttccactaattcctgc-taa 979
|||||||||| ||||||||| ||||| ||||| || || || ||||||| |||||| ||
Sbjct: 376 aacggcatctccatgaagtctgccttaacaaagtcgcaagtcccactaactcctgcctac 317
Query: 980 acggttgagctcctttcccc-tggttatctggtattcgttgttattcaatccggtaactg 1038
|| || ||||||||||||| | ||||||||||| || ||||| |||||||| || ||||
Sbjct: 316 ccgattaagctcctttccccctagttatctggtactcattgttgttcaatccagtgactg 257
Query: 1039 aagttgagctaaatcttgcaatttctctcagtggtccacctattccacagcccacatcta 1098
||| |||||||| | ||||||||||| |||||||| ||||||||||| || || || |
Sbjct: 256 aagccaagctaaatttggcaatttctcttagtggtccgcctattccacaaccgacgtcca 197
Query: 1099 aaaccttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttga 1158
|||||||||||||||||| || ||||| || ||||||||||| |||||||||||||| |
Sbjct: 196 aaaccttcattcctggtt-cactccaagctgaagggcaagaaagtgctcatgtcgcttaa 138
Query: 1159 tgctttcacgtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaac 1218
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tgctttcacgtagggattctccattccatctgtgagcaaagtggaaggattcaccccaac 78
Query: 1219 catactcatagaagctagtggcaagatcatagtatttattaaccatatcagtatagttgg 1278
|||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||
Sbjct: 77 catactcatagaagctggtggcaagatcatagtatttattaaccatgtctgtgtagttgg 18
Query: 1279 acttccttgcttc 1291
|||| ||||||||
Sbjct: 17 actttcttgcttc 5
>gb|AU184519.1|AU184519 AU184519 Rice root Oryza sativa (japonica cultivar-group) cDNA clone
R2709, mRNA sequence
Length = 431
Score = 361 bits (182), Expect = 8e-097
Identities = 242/262 (92%)
Strand = Plus / Minus
Query: 1131 agggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctg 1190
||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 428 agggcaagaaagtgctcatgtcgcttaatgctttcacgtagggattctccattccatctg 369
Query: 1191 tgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatag 1250
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 368 tgagcaaagtggaaggattcaccccaaccatactcatagaagctggtggcaagatcatag 309
Query: 1251 tatttattaaccatatcagtatagttggacttccttgcttcctccttccctccatagtat 1310
|||||||||||||| || || ||||||||||| |||||||| || || ||||||||||||
Sbjct: 308 tatttattaaccatgtctgtgtagttggactttcttgcttcttcttttcctccatagtat 249
Query: 1311 ccatgatatttctcatactcatcgacggccgacttgacttccaccttgttgatcttccct 1370
||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||||||
Sbjct: 248 ccatggtatttctcatactcatcgacagccgacttgacctcatccttggtgatcttcccc 189
Query: 1371 ccgaggccagaagcaagatcca 1392
||||| ||||| ||||||||||
Sbjct: 188 ccgagtccagatgcaagatcca 167
>gb|AU032204.1|AU032204 AU032204 Rice root Oryza sativa (japonica cultivar-group) cDNA clone
R3690_1A, mRNA sequence
Length = 362
Score = 311 bits (157), Expect = 6e-082
Identities = 307/358 (85%)
Strand = Plus / Minus
Query: 753 ttgtgggttgcattgttaggatcatagtgatccgtaatgcaccactcgtacacggcaaag 812
||||| |||||| |||| || ||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 361 ttgtgtgttgcantgttcggttcatagtgatcagtaatacaccactcatacacagcaaaa 302
Query: 813 cactggccaggcttcaacacacgatatatctccttgtagcaaccaactggatcaggtgca 872
||||||||||||||||| |||||||| |||||||| ||||| ||||| ||||||||| |
Sbjct: 301 cactggccaggcttcaatacacgatagatctccttatagcagccaaccggatcaggtncg 242
Query: 873 tgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggcatcttc 932
|| |||||||||||||||| || ||||||||||||||||| ||| ||||||||||||
Sbjct: 241 tggcatgttgcctcaatggnatagacagcatcaaaagtgttatcagaaaacggcatcttc 182
Query: 933 atgaagtccgccttgacaaaatcacatgttccactaattcctgctaaacggttgagctcc 992
|||||||| ||||| ||||| || || |||||||||| |||||||| || || ||||||
Sbjct: 181 atgaagtctgccttcacaaagtcgcaagttccactaactcctgctacccgattaagctcc 122
Query: 993 tttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagctaaat 1052
|||||||| ||||||||||| || ||||| |||||||| || ||||||| ||||||||
Sbjct: 121 tttcccctagttatctggtactcattgttgttcaatccagtgactgaagccaagctaaat 62
Query: 1053 cttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcattc 1110
| ||||||||||| |||||||| ||||||||||| || || || |||||||||||||
Sbjct: 61 ttggcaatttctcttagtggtccgcctattccacaaccgacgtccaaaaccttcattc 4
>gb|C73760.2|C73760 C73760 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20519_1A, mRNA sequence
Length = 427
Score = 250 bits (126), Expect = 2e-063
Identities = 306/365 (83%), Gaps = 1/365 (0%)
Strand = Plus / Minus
Query: 404 aaagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagc 463
|||||||||||| | ||||||||| |||||||| || || || || || ||||| || ||
Sbjct: 366 aaagaagtacatcgncgtgaagatttccttcttgccaccttcgacgagaccttcagctgc 307
Query: 464 cttctccaggaaattagagaccctctcactgccctgcggagcaagaccaacgtactccag 523
|||||| | || ||||| ||||| ||||| || || || ||||| || ||||| ||||
Sbjct: 306 cttctctaaaaagttagataccctttcacttccttgtgg-gcaaggccgacgtattccaa 248
Query: 524 ggccttgaccattgtgcgggtaatcatgcgtcccacagaggtcaaacggaagctactcag 583
||||| ||||||||||| ||||| || ||||||| |||| ||||||||||||||
Sbjct: 247 tgccttcaccattgtgcgagtaattgcacgccccacagtagtcagacggaagctactcaa 188
Query: 584 ggagaatcggcttggatccaagggcaagtaccaaggcaagggagaatcttcagcaagatc 643
||| || ||||||||||||||||||| ||||||||| | || |||||||||||||| ||
Sbjct: 187 ggaaaaccggcttggatccaagggcaggtaccaaggaaccggggaatcttcagcaaggtc 128
Query: 644 cttatcccaaacaacctcaaacccggcgtcttttactgcctggagacattgccgagtgct 703
|||||||||| |||||||||||| || |||||| | || || |||||||| |||||||
Sbjct: 127 tttatcccaaataacctcaaacccagcatcttttgcagcttgaagacattgttgagtgct 68
Query: 704 tctgatatctggcaggccattgccaagctcaatttcatccttgatccttttgtgggttgc 763
|| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 67 tcggatatctggcaggccattgccaagctcgatttcatccttgatcctcttgtgtgttgc 8
Query: 764 attgt 768
|||||
Sbjct: 7 attgt 3
>gb|AACV01015390.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015390, whole
genome shotgun sequence
Length = 10237
Score = 220 bits (111), Expect = 2e-054
Identities = 180/203 (88%)
Strand = Plus / Plus
Query: 657 acctcaaacccggcgtcttttactgcctggagacattgccgagtgcttctgatatctggc 716
||||||||||| || |||||| | || || |||||||| ||||||||| ||||||||||
Sbjct: 6640 acctcaaacccagcatcttttgcagcttgaagacattgttgagtgcttcggatatctggc 6699
Query: 717 aggccattgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatca 776
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || |||
Sbjct: 6700 aggccattgccaagctcgatttcatccttgatcctcttgtgtgttgcattgttcggttca 6759
Query: 777 tagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaacacacga 836
|||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 6760 tagtgatcagtaatacaccactcatacacagcaaaacactggccaggcttcaatacacga 6819
Query: 837 tatatctccttgtagcaaccaac 859
|| |||||||| ||||| |||||
Sbjct: 6820 tagatctccttatagcagccaac 6842
Score = 141 bits (71), Expect = 1e-030
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1188 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatca 1247
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8237 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctggtggcaagatca 8296
Query: 1248 tagtatttattaacc 1262
|||||||||||||||
Sbjct: 8297 tagtatttattaacc 8311
Score = 123 bits (62), Expect = 3e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 1100 aaccttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgat 1159
|||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 8030 aaccttcattcctggtttcactccaagctgaagggcaagaaagtgctcatgtcgcttaat 8089
Query: 1160 gctttcacgtaaggattctccattccatct 1189
||||||||||| ||||||||||||||||||
Sbjct: 8090 gctttcacgtagggattctccattccatct 8119
Score = 99.6 bits (50), Expect = 5e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 555 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 614
||||||| |||| |||||||||||||| ||| || ||||||||||||||||||| ||||
Sbjct: 6324 cccacagtagtcagacggaagctactcaaggaaaaccggcttggatccaagggcaggtac 6383
Query: 615 caaggcaagggagaatcttcagcaagatccttatcccaaacaacct 660
||||| | || |||||||||||||| || |||||||||| |||||
Sbjct: 6384 caaggaaccggggaatcttcagcaaggtctttatcccaaataacct 6429
Score = 97.6 bits (49), Expect = 2e-017
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 861 ggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcg 920
||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 6938 ggatcaggtgcgtggcatgttgcctcaatggcatagacagcatcaaaagtgttatcagaa 6997
Query: 921 aacggcatcttcatgaagtccgcct 945
|||||||||||||||||||| ||||
Sbjct: 6998 aacggcatcttcatgaagtctgcct 7022
Score = 73.8 bits (37), Expect = 3e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1272 tagttggacttccttgcttcctccttccctccatagtatccatgatatttctcatac 1328
||||||||||| |||||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 8855 tagttggactttcttgcttcttcttttcctccatagtatccatggtatttctcatac 8911
Score = 69.9 bits (35), Expect = 4e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
||||||||||| ||||||||||| || ||||| |||||||||| ||||| ||||| |||
Sbjct: 9883 tactcatcgacagccgacttgacctcatccttggtgatcttccccccgagtccagatgca 9942
Query: 1386 agatcca 1392
|||||||
Sbjct: 9943 agatcca 9949
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 991 cctttcccctggttatctggtattcgttgttattcaatccggtaactgaag 1041
|||||||||| ||||||||||| || ||||| |||||||| || |||||||
Sbjct: 7460 cctttcccctagttatctggtactcattgttgttcaatccagtgactgaag 7510
Score = 52.0 bits (26), Expect = 0.001
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaacct 1104
|||||| | ||||||||||| |||||||| ||||||||||| || || || |||||||
Sbjct: 7882 ctaaatttggcaatttctcttagtggtccgcctattccacaaccgacgtccaaaacct 7939
Score = 52.0 bits (26), Expect = 0.001
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
|||||| ||||| | |||||||||||| ||||||||||| ||||||
Sbjct: 5290 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttc 5335
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1119_B04
Length = 151721
Score = 220 bits (111), Expect = 2e-054
Identities = 180/203 (88%)
Strand = Plus / Plus
Query: 657 acctcaaacccggcgtcttttactgcctggagacattgccgagtgcttctgatatctggc 716
||||||||||| || |||||| | || || |||||||| ||||||||| ||||||||||
Sbjct: 91916 acctcaaacccagcatcttttgcagcttgaagacattgttgagtgcttcggatatctggc 91975
Query: 717 aggccattgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatca 776
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || |||
Sbjct: 91976 aggccattgccaagctcgatttcatccttgatcctcttgtgtgttgcattgttcggttca 92035
Query: 777 tagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaacacacga 836
|||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 92036 tagtgatcagtaatacaccactcatacacagcaaaacactggccaggcttcaatacacga 92095
Query: 837 tatatctccttgtagcaaccaac 859
|| |||||||| ||||| |||||
Sbjct: 92096 tagatctccttatagcagccaac 92118
Score = 141 bits (71), Expect = 1e-030
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1188 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatca 1247
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 93513 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctggtggcaagatca 93572
Query: 1248 tagtatttattaacc 1262
|||||||||||||||
Sbjct: 93573 tagtatttattaacc 93587
Score = 123 bits (62), Expect = 3e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 1100 aaccttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgat 1159
|||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 93306 aaccttcattcctggtttcactccaagctgaagggcaagaaagtgctcatgtcgcttaat 93365
Query: 1160 gctttcacgtaaggattctccattccatct 1189
||||||||||| ||||||||||||||||||
Sbjct: 93366 gctttcacgtagggattctccattccatct 93395
Score = 99.6 bits (50), Expect = 5e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 555 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 614
||||||| |||| |||||||||||||| ||| || ||||||||||||||||||| ||||
Sbjct: 91600 cccacagtagtcagacggaagctactcaaggaaaaccggcttggatccaagggcaggtac 91659
Query: 615 caaggcaagggagaatcttcagcaagatccttatcccaaacaacct 660
||||| | || |||||||||||||| || |||||||||| |||||
Sbjct: 91660 caaggaaccggggaatcttcagcaaggtctttatcccaaataacct 91705
Score = 97.6 bits (49), Expect = 2e-017
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 861 ggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcg 920
||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 92214 ggatcaggtgcgtggcatgttgcctcaatggcatagacagcatcaaaagtgttatcagaa 92273
Query: 921 aacggcatcttcatgaagtccgcct 945
|||||||||||||||||||| ||||
Sbjct: 92274 aacggcatcttcatgaagtctgcct 92298
Score = 73.8 bits (37), Expect = 3e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1272 tagttggacttccttgcttcctccttccctccatagtatccatgatatttctcatac 1328
||||||||||| |||||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 94131 tagttggactttcttgcttcttcttttcctccatagtatccatggtatttctcatac 94187
Score = 69.9 bits (35), Expect = 4e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
||||||||||| ||||||||||| || ||||| |||||||||| ||||| ||||| |||
Sbjct: 95159 tactcatcgacagccgacttgacctcatccttggtgatcttccccccgagtccagatgca 95218
Query: 1386 agatcca 1392
|||||||
Sbjct: 95219 agatcca 95225
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 991 cctttcccctggttatctggtattcgttgttattcaatccggtaactgaag 1041
|||||||||| ||||||||||| || ||||| |||||||| || |||||||
Sbjct: 92736 cctttcccctagttatctggtactcattgttgttcaatccagtgactgaag 92786
Score = 52.0 bits (26), Expect = 0.001
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaacct 1104
|||||| | ||||||||||| |||||||| ||||||||||| || || || |||||||
Sbjct: 93158 ctaaatttggcaatttctcttagtggtccgcctattccacaaccgacgtccaaaacct 93215
Score = 52.0 bits (26), Expect = 0.001
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
|||||| ||||| | |||||||||||| ||||||||||| ||||||
Sbjct: 90566 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttc 90611
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 220 bits (111), Expect = 2e-054
Identities = 180/203 (88%)
Strand = Plus / Plus
Query: 657 acctcaaacccggcgtcttttactgcctggagacattgccgagtgcttctgatatctggc 716
||||||||||| || |||||| | || || |||||||| ||||||||| ||||||||||
Sbjct: 5740960 acctcaaacccagcatcttttgcagcttgaagacattgttgagtgcttcggatatctggc 5741019
Query: 717 aggccattgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatca 776
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || |||
Sbjct: 5741020 aggccattgccaagctcgatttcatccttgatcctcttgtgtgttgcattgttcggttca 5741079
Query: 777 tagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaacacacga 836
|||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 5741080 tagtgatcagtaatacaccactcatacacagcaaaacactggccaggcttcaatacacga 5741139
Query: 837 tatatctccttgtagcaaccaac 859
|| |||||||| ||||| |||||
Sbjct: 5741140 tagatctccttatagcagccaac 5741162
Score = 141 bits (71), Expect = 1e-030
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1188 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatca 1247
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5742557 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctggtggcaagatca 5742616
Query: 1248 tagtatttattaacc 1262
|||||||||||||||
Sbjct: 5742617 tagtatttattaacc 5742631
Score = 123 bits (62), Expect = 3e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 1100 aaccttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgat 1159
|||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 5742350 aaccttcattcctggtttcactccaagctgaagggcaagaaagtgctcatgtcgcttaat 5742409
Query: 1160 gctttcacgtaaggattctccattccatct 1189
||||||||||| ||||||||||||||||||
Sbjct: 5742410 gctttcacgtagggattctccattccatct 5742439
Score = 99.6 bits (50), Expect = 5e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 555 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 614
||||||| |||| |||||||||||||| ||| || ||||||||||||||||||| ||||
Sbjct: 5740644 cccacagtagtcagacggaagctactcaaggaaaaccggcttggatccaagggcaggtac 5740703
Query: 615 caaggcaagggagaatcttcagcaagatccttatcccaaacaacct 660
||||| | || |||||||||||||| || |||||||||| |||||
Sbjct: 5740704 caaggaaccggggaatcttcagcaaggtctttatcccaaataacct 5740749
Score = 97.6 bits (49), Expect = 2e-017
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 861 ggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcg 920
||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 5741258 ggatcaggtgcgtggcatgttgcctcaatggcatagacagcatcaaaagtgttatcagaa 5741317
Query: 921 aacggcatcttcatgaagtccgcct 945
|||||||||||||||||||| ||||
Sbjct: 5741318 aacggcatcttcatgaagtctgcct 5741342
Score = 73.8 bits (37), Expect = 3e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1272 tagttggacttccttgcttcctccttccctccatagtatccatgatatttctcatac 1328
||||||||||| |||||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 5743175 tagttggactttcttgcttcttcttttcctccatagtatccatggtatttctcatac 5743231
Score = 69.9 bits (35), Expect = 4e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
||||||||||| ||||||||||| || ||||| |||||||||| ||||| ||||| |||
Sbjct: 5744203 tactcatcgacagccgacttgacctcatccttggtgatcttccccccgagtccagatgca 5744262
Query: 1386 agatcca 1392
|||||||
Sbjct: 5744263 agatcca 5744269
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 991 cctttcccctggttatctggtattcgttgttattcaatccggtaactgaag 1041
|||||||||| ||||||||||| || ||||| |||||||| || |||||||
Sbjct: 5741780 cctttcccctagttatctggtactcattgttgttcaatccagtgactgaag 5741830
Score = 52.0 bits (26), Expect = 0.001
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaacct 1104
|||||| | ||||||||||| |||||||| ||||||||||| || || || |||||||
Sbjct: 5742202 ctaaatttggcaatttctcttagtggtccgcctattccacaaccgacgtccaaaacct 5742259
Score = 52.0 bits (26), Expect = 0.001
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
|||||| ||||| | |||||||||||| ||||||||||| ||||||
Sbjct: 5739610 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttc 5739655
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 220 bits (111), Expect = 2e-054
Identities = 180/203 (88%)
Strand = Plus / Plus
Query: 657 acctcaaacccggcgtcttttactgcctggagacattgccgagtgcttctgatatctggc 716
||||||||||| || |||||| | || || |||||||| ||||||||| ||||||||||
Sbjct: 2875739 acctcaaacccagcatcttttgcagcttgaagacattgttgagtgcttcggatatctggc 2875798
Query: 717 aggccattgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatca 776
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || |||
Sbjct: 2875799 aggccattgccaagctcgatttcatccttgatcctcttgtgtgttgcattgttcggttca 2875858
Query: 777 tagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaacacacga 836
|||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 2875859 tagtgatcagtaatacaccactcatacacagcaaaacactggccaggcttcaatacacga 2875918
Query: 837 tatatctccttgtagcaaccaac 859
|| |||||||| ||||| |||||
Sbjct: 2875919 tagatctccttatagcagccaac 2875941
Score = 141 bits (71), Expect = 1e-030
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1188 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatca 1247
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2877336 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctggtggcaagatca 2877395
Query: 1248 tagtatttattaacc 1262
|||||||||||||||
Sbjct: 2877396 tagtatttattaacc 2877410
Score = 123 bits (62), Expect = 3e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 1100 aaccttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgat 1159
|||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 2877129 aaccttcattcctggtttcactccaagctgaagggcaagaaagtgctcatgtcgcttaat 2877188
Query: 1160 gctttcacgtaaggattctccattccatct 1189
||||||||||| ||||||||||||||||||
Sbjct: 2877189 gctttcacgtagggattctccattccatct 2877218
Score = 99.6 bits (50), Expect = 5e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 555 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 614
||||||| |||| |||||||||||||| ||| || ||||||||||||||||||| ||||
Sbjct: 2875423 cccacagtagtcagacggaagctactcaaggaaaaccggcttggatccaagggcaggtac 2875482
Query: 615 caaggcaagggagaatcttcagcaagatccttatcccaaacaacct 660
||||| | || |||||||||||||| || |||||||||| |||||
Sbjct: 2875483 caaggaaccggggaatcttcagcaaggtctttatcccaaataacct 2875528
Score = 97.6 bits (49), Expect = 2e-017
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 861 ggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcg 920
||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 2876037 ggatcaggtgcgtggcatgttgcctcaatggcatagacagcatcaaaagtgttatcagaa 2876096
Query: 921 aacggcatcttcatgaagtccgcct 945
|||||||||||||||||||| ||||
Sbjct: 2876097 aacggcatcttcatgaagtctgcct 2876121
Score = 73.8 bits (37), Expect = 3e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1272 tagttggacttccttgcttcctccttccctccatagtatccatgatatttctcatac 1328
||||||||||| |||||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 2877954 tagttggactttcttgcttcttcttttcctccatagtatccatggtatttctcatac 2878010
Score = 69.9 bits (35), Expect = 4e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
||||||||||| ||||||||||| || ||||| |||||||||| ||||| ||||| |||
Sbjct: 2878982 tactcatcgacagccgacttgacctcatccttggtgatcttccccccgagtccagatgca 2879041
Query: 1386 agatcca 1392
|||||||
Sbjct: 2879042 agatcca 2879048
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 991 cctttcccctggttatctggtattcgttgttattcaatccggtaactgaag 1041
|||||||||| ||||||||||| || ||||| |||||||| || |||||||
Sbjct: 2876559 cctttcccctagttatctggtactcattgttgttcaatccagtgactgaag 2876609
Score = 52.0 bits (26), Expect = 0.001
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaacct 1104
|||||| | ||||||||||| |||||||| ||||||||||| || || || |||||||
Sbjct: 2876981 ctaaatttggcaatttctcttagtggtccgcctattccacaaccgacgtccaaaacct 2877038
Score = 52.0 bits (26), Expect = 0.001
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
|||||| ||||| | |||||||||||| ||||||||||| ||||||
Sbjct: 2874389 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttc 2874434
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 220 bits (111), Expect = 2e-054
Identities = 180/203 (88%)
Strand = Plus / Plus
Query: 657 acctcaaacccggcgtcttttactgcctggagacattgccgagtgcttctgatatctggc 716
||||||||||| || |||||| | || || |||||||| ||||||||| ||||||||||
Sbjct: 5692488 acctcaaacccagcatcttttgcagcttgaagacattgttgagtgcttcggatatctggc 5692547
Query: 717 aggccattgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatca 776
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || |||
Sbjct: 5692548 aggccattgccaagctcgatttcatccttgatcctcttgtgtgttgcattgttcggttca 5692607
Query: 777 tagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaacacacga 836
|||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 5692608 tagtgatcagtaatacaccactcatacacagcaaaacactggccaggcttcaatacacga 5692667
Query: 837 tatatctccttgtagcaaccaac 859
|| |||||||| ||||| |||||
Sbjct: 5692668 tagatctccttatagcagccaac 5692690
Score = 141 bits (71), Expect = 1e-030
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1188 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatca 1247
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5694085 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctggtggcaagatca 5694144
Query: 1248 tagtatttattaacc 1262
|||||||||||||||
Sbjct: 5694145 tagtatttattaacc 5694159
Score = 123 bits (62), Expect = 3e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 1100 aaccttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgat 1159
|||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 5693878 aaccttcattcctggtttcactccaagctgaagggcaagaaagtgctcatgtcgcttaat 5693937
Query: 1160 gctttcacgtaaggattctccattccatct 1189
||||||||||| ||||||||||||||||||
Sbjct: 5693938 gctttcacgtagggattctccattccatct 5693967
Score = 99.6 bits (50), Expect = 5e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 555 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 614
||||||| |||| |||||||||||||| ||| || ||||||||||||||||||| ||||
Sbjct: 5692172 cccacagtagtcagacggaagctactcaaggaaaaccggcttggatccaagggcaggtac 5692231
Query: 615 caaggcaagggagaatcttcagcaagatccttatcccaaacaacct 660
||||| | || |||||||||||||| || |||||||||| |||||
Sbjct: 5692232 caaggaaccggggaatcttcagcaaggtctttatcccaaataacct 5692277
Score = 97.6 bits (49), Expect = 2e-017
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 861 ggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcg 920
||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 5692786 ggatcaggtgcgtggcatgttgcctcaatggcatagacagcatcaaaagtgttatcagaa 5692845
Query: 921 aacggcatcttcatgaagtccgcct 945
|||||||||||||||||||| ||||
Sbjct: 5692846 aacggcatcttcatgaagtctgcct 5692870
Score = 73.8 bits (37), Expect = 3e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1272 tagttggacttccttgcttcctccttccctccatagtatccatgatatttctcatac 1328
||||||||||| |||||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 5694703 tagttggactttcttgcttcttcttttcctccatagtatccatggtatttctcatac 5694759
Score = 69.9 bits (35), Expect = 4e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
||||||||||| ||||||||||| || ||||| |||||||||| ||||| ||||| |||
Sbjct: 5695731 tactcatcgacagccgacttgacctcatccttggtgatcttccccccgagtccagatgca 5695790
Query: 1386 agatcca 1392
|||||||
Sbjct: 5695791 agatcca 5695797
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1136 aagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctg 1190
|||||| |||||||||| ||||||||||||||| | |||| ||||||| |||||
Sbjct: 14457962 aagaaagtgctcatgtcacttgatgctttcacgcagggatcatccattctatctg 14457908
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 991 cctttcccctggttatctggtattcgttgttattcaatccggtaactgaag 1041
|||||||||| ||||||||||| || ||||| |||||||| || |||||||
Sbjct: 5693308 cctttcccctagttatctggtactcattgttgttcaatccagtgactgaag 5693358
Score = 52.0 bits (26), Expect = 0.001
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaacct 1104
|||||| | ||||||||||| |||||||| ||||||||||| || || || |||||||
Sbjct: 5693730 ctaaatttggcaatttctcttagtggtccgcctattccacaaccgacgtccaaaacct 5693787
Score = 52.0 bits (26), Expect = 0.001
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
|||||| ||||| | |||||||||||| ||||||||||| ||||||
Sbjct: 5691138 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttc 5691183
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 220 bits (111), Expect = 2e-054
Identities = 180/203 (88%)
Strand = Plus / Plus
Query: 657 acctcaaacccggcgtcttttactgcctggagacattgccgagtgcttctgatatctggc 716
||||||||||| || |||||| | || || |||||||| ||||||||| ||||||||||
Sbjct: 5784888 acctcaaacccagcatcttttgcagcttgaagacattgttgagtgcttcggatatctggc 5784947
Query: 717 aggccattgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatca 776
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || |||
Sbjct: 5784948 aggccattgccaagctcgatttcatccttgatcctcttgtgtgttgcattgttcggttca 5785007
Query: 777 tagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaacacacga 836
|||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 5785008 tagtgatcagtaatacaccactcatacacagcaaaacactggccaggcttcaatacacga 5785067
Query: 837 tatatctccttgtagcaaccaac 859
|| |||||||| ||||| |||||
Sbjct: 5785068 tagatctccttatagcagccaac 5785090
Score = 141 bits (71), Expect = 1e-030
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1188 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatca 1247
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5786485 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctggtggcaagatca 5786544
Query: 1248 tagtatttattaacc 1262
|||||||||||||||
Sbjct: 5786545 tagtatttattaacc 5786559
Score = 123 bits (62), Expect = 3e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 1100 aaccttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgat 1159
|||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 5786278 aaccttcattcctggtttcactccaagctgaagggcaagaaagtgctcatgtcgcttaat 5786337
Query: 1160 gctttcacgtaaggattctccattccatct 1189
||||||||||| ||||||||||||||||||
Sbjct: 5786338 gctttcacgtagggattctccattccatct 5786367
Score = 99.6 bits (50), Expect = 5e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 555 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 614
||||||| |||| |||||||||||||| ||| || ||||||||||||||||||| ||||
Sbjct: 5784572 cccacagtagtcagacggaagctactcaaggaaaaccggcttggatccaagggcaggtac 5784631
Query: 615 caaggcaagggagaatcttcagcaagatccttatcccaaacaacct 660
||||| | || |||||||||||||| || |||||||||| |||||
Sbjct: 5784632 caaggaaccggggaatcttcagcaaggtctttatcccaaataacct 5784677
Score = 97.6 bits (49), Expect = 2e-017
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 861 ggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcg 920
||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 5785186 ggatcaggtgcgtggcatgttgcctcaatggcatagacagcatcaaaagtgttatcagaa 5785245
Query: 921 aacggcatcttcatgaagtccgcct 945
|||||||||||||||||||| ||||
Sbjct: 5785246 aacggcatcttcatgaagtctgcct 5785270
Score = 73.8 bits (37), Expect = 3e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1272 tagttggacttccttgcttcctccttccctccatagtatccatgatatttctcatac 1328
||||||||||| |||||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 5787103 tagttggactttcttgcttcttcttttcctccatagtatccatggtatttctcatac 5787159
Score = 69.9 bits (35), Expect = 4e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
||||||||||| ||||||||||| || ||||| |||||||||| ||||| ||||| |||
Sbjct: 5788131 tactcatcgacagccgacttgacctcatccttggtgatcttccccccgagtccagatgca 5788190
Query: 1386 agatcca 1392
|||||||
Sbjct: 5788191 agatcca 5788197
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1136 aagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctg 1190
|||||| |||||||||| ||||||||||||||| | |||| ||||||| |||||
Sbjct: 15399472 aagaaagtgctcatgtcacttgatgctttcacgcagggatcatccattctatctg 15399418
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 991 cctttcccctggttatctggtattcgttgttattcaatccggtaactgaag 1041
|||||||||| ||||||||||| || ||||| |||||||| || |||||||
Sbjct: 5785708 cctttcccctagttatctggtactcattgttgttcaatccagtgactgaag 5785758
Score = 52.0 bits (26), Expect = 0.001
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaacct 1104
|||||| | ||||||||||| |||||||| ||||||||||| || || || |||||||
Sbjct: 5786130 ctaaatttggcaatttctcttagtggtccgcctattccacaaccgacgtccaaaacct 5786187
Score = 52.0 bits (26), Expect = 0.001
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
|||||| ||||| | |||||||||||| ||||||||||| ||||||
Sbjct: 5783538 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttc 5783583
>gb|C73768.2|C73768 C73768 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20541_1A, mRNA sequence
Length = 261
Score = 216 bits (109), Expect = 3e-053
Identities = 187/213 (87%)
Strand = Plus / Minus
Query: 555 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 614
||||||| |||| |||||||||||||| ||| || ||||||||||||||||||| ||||
Sbjct: 216 cccacagtagtcagacggaagctactcaaggaaaaccggcttggatccaagggcaggtac 157
Query: 615 caaggcaagggagaatcttcagcaagatccttatcccaaacaacctcaaacccggcgtct 674
||||| | || |||||||||||||| || |||||||||| |||||||||||| || |||
Sbjct: 156 caaggaaccggggaatcttcagcaaggtctttatcccaaataacctcaaacccagcatct 97
Query: 675 tttactgcctggagacattgccgagtgcttctgatatctggcaggccattgccaagctca 734
||| | || || |||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 96 tttgcagcttgaagacattgttgagtgcttcggatatctggcaggccattgccaagctcg 37
Query: 735 atttcatccttgatccttttgtgggttgcattg 767
||||||||||||||||| ||||| |||||||||
Sbjct: 36 atttcatccttgatcctcttgtgtgttgcattg 4
>gb|CZ555321.1|CZ555321 M0027188 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0027188, DNA sequence
Length = 452
Score = 198 bits (100), Expect = 7e-048
Identities = 179/204 (87%), Gaps = 1/204 (0%)
Strand = Plus / Plus
Query: 657 acctcaaacccggcgtcttttactgcctggagacattgccgagtgcttctgatatctggc 716
||||||||||| || |||||| | || || |||||||| ||||||||| ||||||||||
Sbjct: 8 acctcaaacccagcatcttttgcagcttgaagacattgttgagtgcttcggatatctggc 67
Query: 717 aggccattgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatca 776
||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||| || |||
Sbjct: 68 aggccattgccaagctcgatttcatccttgatcctcttgtgtgttacattgttcggttca 127
Query: 777 tagtg-atccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaacacacg 835
||||| ||| ||||| |||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 128 tagtgaatcagtaatacaccactcatacacagcaaaacactggccaggcttcaatacacg 187
Query: 836 atatatctccttgtagcaaccaac 859
||| |||||||| ||||| |||||
Sbjct: 188 atagatctccttatagcagccaac 211
Score = 95.6 bits (48), Expect = 7e-017
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 861 ggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcg 920
||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 307 ggatcaggtgcgtggcatgttgcctcaatggcatagacagcatcaaaagtgttatcagaa 366
Query: 921 aacggcatcttcatgaagtc 940
||||||||||||||||||||
Sbjct: 367 aacggcatcttcatgaagtc 386
>gb|AU092218.1|AU092218 AU092218 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11423, mRNA sequence
Length = 722
Score = 141 bits (71), Expect = 1e-030
Identities = 236/290 (81%), Gaps = 1/290 (0%)
Strand = Plus / Minus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttctttccgccctctac 448
|||||| ||||| | |||||||||||| ||||||||||| |||||||| || || || ||
Sbjct: 307 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttcttgccaccttcgac 248
Query: 449 cagcccttctgcagccttctccaggaaattagagaccctctcactgccctgcggagcaag 508
|| ||||| || |||||||| | || ||||| ||||| ||||| || || || |||||
Sbjct: 247 gagaccttcagctgccttctctaaaaagttagataccctttcacttccttgtggggcaag 188
Query: 509 accaacgtactccagggccttgaccattgtgcgggtaatcatgcgtcccacagaggtcaa 568
|| ||||| |||| ||||| ||||||||||| ||||| || ||||||| ||||
Sbjct: 187 gccgacgtattccaatgccttcaccattgtgcgagtaattgcacgccccacagtagtcag 128
Query: 569 acggaagctactcagggagaatcggcttggatccaagggca-agtaccaaggcaagggag 627
|||||||||||||| ||| || ||||||||||||||||| | ||||||||| | || |
Sbjct: 127 acggaagctactcaaggaaaaccggcttggatccaaggggagggtaccaaggaaccgggg 68
Query: 628 aatcttcagcaagatccttatcccaaacaacctcaaacccggcgtctttt 677
|||||||||||| || |||||||||| |||||||||||| || ||||||
Sbjct: 67 aatcttcagcaangtctttatcccaaataacctcaaacccagcatctttt 18
>gb|D24567.1|D24567 RICR2178A Rice root Oryza sativa (japonica cultivar-group) cDNA clone
R2178_1A, mRNA sequence
Length = 259
Score = 109 bits (55), Expect = 5e-021
Identities = 84/94 (89%)
Strand = Plus / Minus
Query: 1299 cctccatagtatccatgatatttctcatactcatcgacggccgacttgacttccaccttg 1358
||||||||||||||||| ||||||| |||||||||||| ||||||||||| || |||||
Sbjct: 256 cctccatagtatccatggtatttctnatactcatcgacagccgacttgacctcatccttg 197
Query: 1359 ttgatcttccctccgaggccagaagcaagatcca 1392
|||||||||| ||||| ||||| ||||||||||
Sbjct: 196 gtgatcttccccccgagtccagatgcaagatcca 163
>gb|CZ555779.1|CZ555779 M0028813 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0028813, DNA sequence
Length = 101
Score = 107 bits (54), Expect = 2e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 657 acctcaaacccggcgtcttttactgcctggagacattgccgagtgcttctgatatctggc 716
||||||||||| || |||||| | || || |||||||| ||||||||| ||||||||||
Sbjct: 8 acctcaaacccagcatcttttgcagcttgaagacattgttgagtgcttcggatatctggc 67
Query: 717 aggccattgccaagctcaatttcatccttgatcc 750
||||||||||||||||| ||||||||||||||||
Sbjct: 68 aggccattgccaagctcgatttcatccttgatcc 101
>gb|CF329663.1|CF329663 NACL--05-B03.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--05-B03, mRNA sequence
Length = 527
Score = 60.0 bits (30), Expect = 4e-006
Identities = 108/134 (80%)
Strand = Plus / Plus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttctttccgccctctac 448
|||||| ||||| | |||||||||||| ||||||||||| |||||||| || || || ||
Sbjct: 388 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttcttgccaccttcgac 447
Query: 449 cagcccttctgcagccttctccaggaaattagagaccctctcactgccctgcggagcaag 508
|| ||||| || |||||||| | || ||||| ||||| ||||| || || || |||||
Sbjct: 448 gagaccttcagctgccttctctaaaaagttagataccctttcacttccttgtggggcaag 507
Query: 509 accaacgtactcca 522
|| ||||| ||||
Sbjct: 508 gccgacgtattcca 521
>gb|CF329172.1|CF329172 NACL--04-G10.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--04-G10, mRNA sequence
Length = 404
Score = 58.0 bits (29), Expect = 2e-005
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttctttccgccctctac 448
|||||| ||||| | |||||||||||| ||||||||||| |||||||| || || || ||
Sbjct: 89 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttcttgccaccttcgac 30
Query: 449 cagcccttctgcagccttctc 469
|| ||||| || ||||||||
Sbjct: 29 gagaccttcagctgccttctc 9
>gb|CF329173.1|CF329173 NACL--04-G10.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--04-G10, mRNA sequence
Length = 404
Score = 58.0 bits (29), Expect = 2e-005
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttctttccgccctctac 448
|||||| ||||| | |||||||||||| ||||||||||| |||||||| || || || ||
Sbjct: 316 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttcttgccaccttcgac 375
Query: 449 cagcccttctgcagccttctc 469
|| ||||| || ||||||||
Sbjct: 376 gagaccttcagctgccttctc 396
>ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 993
Score = 56.0 bits (28), Expect = 6e-005
Identities = 163/208 (78%)
Strand = Plus / Minus
Query: 983 gttgagctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagt 1042
|||||| ||||| ||||| | ||||||||| | ||||| |||| ||| || || || |
Sbjct: 375 gttgagttccttgccccttgatatctggtacgcattgttgttcagtccagtcaccgatgc 316
Query: 1043 tgagctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaac 1102
|||||| ||||| ||||| ||||||| ||||| || || ||||| ||||| |||| ||
Sbjct: 315 tgagctgaatctggcaatctctctcaagggtcctccaatgccacaccccacgtctaggac 256
Query: 1103 cttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgct 1162
|||||| || || | || ||||||| ||| |||||||||||||| ||||| | |||
Sbjct: 255 cttcatgcccttcttgaggccgagttgcaaggccagaaaatgctcatgacgcttaaggct 196
Query: 1163 ttcacgtaaggattctccattccatctg 1190
||| ||||| | |||||| | |||||||
Sbjct: 195 ttcgcgtaaagtttctccttgccatctg 168
>gb|AACV01016034.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016034, whole
genome shotgun sequence
Length = 15851
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1136 aagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctg 1190
|||||| |||||||||| ||||||||||||||| | |||| ||||||| |||||
Sbjct: 13640 aagaaagtgctcatgtcacttgatgctttcacgcagggatcatccattctatctg 13586
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1047_A06
Length = 111673
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1136 aagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctg 1190
|||||| |||||||||| ||||||||||||||| | |||| ||||||| |||||
Sbjct: 106471 aagaaagtgctcatgtcacttgatgctttcacgcagggatcatccattctatctg 106417
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1136 aagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctg 1190
|||||| |||||||||| ||||||||||||||| | |||| ||||||| |||||
Sbjct: 3022547 aagaaagtgctcatgtcacttgatgctttcacgcagggatcatccattctatctg 3022493
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1136 aagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctg 1190
|||||| |||||||||| ||||||||||||||| | |||| ||||||| |||||
Sbjct: 1058523 aagaaagtgctcatgtcacttgatgctttcacgcagggatcatccattctatctg 1058469
>gb|AQ509533.1|AQ509533 nbxb0096D15f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0096D15f, DNA sequence
Length = 545
Score = 52.0 bits (26), Expect = 0.001
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
|||||| ||||| | |||||||||||| ||||||||||| ||||||
Sbjct: 185 aggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttc 230
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
sequence
Length = 154555
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||| ||| |||||||||||||| ||||| | |||||| ||||| | |||||| | |
Sbjct: 43417 agttgcaaggccagaaaatgctcatgacgcttaaggctttcgcgtaaagtttctccttgc 43358
Query: 1185 catctg 1190
||||||
Sbjct: 43357 catctg 43352
Score = 48.1 bits (24), Expect = 0.015
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
|||| ||| |||||||| ||||||| | |||| ||||||||||||| | || ||||||
Sbjct: 42531 tactgatccacggccgatttgacttgctcctttctgatcttccctcctaatcctgaagca 42472
Query: 1386 agatccag 1393
||||||||
Sbjct: 42471 agatccag 42464
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||||||| ||||||||||| | ||||| | |||||| ||||| | |||||||| |
Sbjct: 8085 agttgcagggccagaaaatgctcccggcgcttaaggctttcgcgtaaagtttctccatgc 8144
Query: 1185 catctg 1190
||||||
Sbjct: 8145 catctg 8150
>gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008131, whole
genome shotgun sequence
Length = 26815
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||| ||| |||||||||||||| ||||| | |||||| ||||| | |||||| | |
Sbjct: 7053 agttgcaaggccagaaaatgctcatgacgcttaaggctttcgcgtaaagtttctccttgc 6994
Query: 1185 catctg 1190
||||||
Sbjct: 6993 catctg 6988
Score = 48.1 bits (24), Expect = 0.015
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
|||| ||| |||||||| ||||||| | |||| ||||||||||||| | || ||||||
Sbjct: 6167 tactgatccacggccgatttgacttgctcctttctgatcttccctcctaatcctgaagca 6108
Query: 1386 agatccag 1393
||||||||
Sbjct: 6107 agatccag 6100
>gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022880, whole
genome shotgun sequence
Length = 10770
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||||||| ||||||||||| | ||||| | |||||| ||||| | |||||||| |
Sbjct: 2180 agttgcagggccagaaaatgctcccggcgcttaaggctttcgcgtaaagtttctccatgc 2121
Query: 1185 catctg 1190
||||||
Sbjct: 2120 catctg 2115
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||| ||| |||||||||||||| ||||| | |||||| ||||| | |||||| | |
Sbjct: 111139 agttgcaaggccagaaaatgctcatgacgcttaaggctttcgcgtaaagtttctccttgc 111198
Query: 1185 catctg 1190
||||||
Sbjct: 111199 catctg 111204
Score = 48.1 bits (24), Expect = 0.015
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
|||| ||| |||||||| ||||||| | |||| ||||||||||||| | || ||||||
Sbjct: 112025 tactgatccacggccgatttgacttgctcctttctgatcttccctcctaatcctgaagca 112084
Query: 1386 agatccag 1393
||||||||
Sbjct: 112085 agatccag 112092
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||||||| ||||||||||| | ||||| | |||||| ||||| | |||||||| |
Sbjct: 1964239 agttgcagggccagaaaatgctcccggcgcttaaggctttcgcgtaaagtttctccatgc 1964298
Query: 1185 catctg 1190
||||||
Sbjct: 1964299 catctg 1964304
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||| ||| |||||||||||||| ||||| | |||||| ||||| | |||||| | |
Sbjct: 7170617 agttgcaaggccagaaaatgctcatgacgcttaaggctttcgcgtaaagtttctccttgc 7170676
Query: 1185 catctg 1190
||||||
Sbjct: 7170677 catctg 7170682
Score = 48.1 bits (24), Expect = 0.015
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
|||| ||| |||||||| ||||||| | |||| ||||||||||||| | || ||||||
Sbjct: 7171503 tactgatccacggccgatttgacttgctcctttctgatcttccctcctaatcctgaagca 7171562
Query: 1386 agatccag 1393
||||||||
Sbjct: 7171563 agatccag 7171570
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||||||| ||||||||||| | ||||| | |||||| ||||| | |||||||| |
Sbjct: 9819283 agttgcagggccagaaaatgctcccggcgcttaaggctttcgcgtaaagtttctccatgc 9819342
Query: 1185 catctg 1190
||||||
Sbjct: 9819343 catctg 9819348
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||| ||| |||||||||||||| ||||| | |||||| ||||| | |||||| | |
Sbjct: 34436780 agttgcaaggccagaaaatgctcatgacgcttaaggctttcgcgtaaagtttctccttgc 34436839
Query: 1185 catctg 1190
||||||
Sbjct: 34436840 catctg 34436845
Score = 48.1 bits (24), Expect = 0.015
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
|||| ||| |||||||| ||||||| | |||| ||||||||||||| | || ||||||
Sbjct: 34437666 tactgatccacggccgatttgacttgctcctttctgatcttccctcctaatcctgaagca 34437725
Query: 1386 agatccag 1393
||||||||
Sbjct: 34437726 agatccag 34437733
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||| ||| |||||||||||||| ||||| | |||||| ||||| | |||||| | |
Sbjct: 33545204 agttgcaaggccagaaaatgctcatgacgcttaaggctttcgcgtaaagtttctccttgc 33545263
Query: 1185 catctg 1190
||||||
Sbjct: 33545264 catctg 33545269
Score = 48.1 bits (24), Expect = 0.015
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
|||| ||| |||||||| ||||||| | |||| ||||||||||||| | || ||||||
Sbjct: 33546090 tactgatccacggccgatttgacttgctcctttctgatcttccctcctaatcctgaagca 33546149
Query: 1386 agatccag 1393
||||||||
Sbjct: 33546150 agatccag 33546157
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||||||| ||||||||||| | ||||| | |||||| ||||| | |||||||| |
Sbjct: 10818565 agttgcagggccagaaaatgctcccggcgcttaaggctttcgcgtaaagtttctccatgc 10818624
Query: 1185 catctg 1190
||||||
Sbjct: 10818625 catctg 10818630
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||| ||| |||||||||||||| ||||| | |||||| ||||| | |||||| | |
Sbjct: 33454694 agttgcaaggccagaaaatgctcatgacgcttaaggctttcgcgtaaagtttctccttgc 33454753
Query: 1185 catctg 1190
||||||
Sbjct: 33454754 catctg 33454759
Score = 48.1 bits (24), Expect = 0.015
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
|||| ||| |||||||| ||||||| | |||| ||||||||||||| | || ||||||
Sbjct: 33455580 tactgatccacggccgatttgacttgctcctttctgatcttccctcctaatcctgaagca 33455639
Query: 1386 agatccag 1393
||||||||
Sbjct: 33455640 agatccag 33455647
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0045P14, complete sequence
Length = 121894
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||||||| ||||||||||| | ||||| | |||||| ||||| | |||||||| |
Sbjct: 8085 agttgcagggccagaaaatgctcccggcgcttaaggctttcgcgtaaagtttctccatgc 8144
Query: 1185 catctg 1190
||||||
Sbjct: 8145 catctg 8150
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 52.0 bits (26), Expect = 0.001
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1125 agttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattc 1184
||||||||||| ||||||||||| | ||||| | |||||| ||||| | |||||||| |
Sbjct: 10897754 agttgcagggccagaaaatgctcccggcgcttaaggctttcgcgtaaagtttctccatgc 10897813
Query: 1185 catctg 1190
||||||
Sbjct: 10897814 catctg 10897819
>gb|AU173325.1|AU173325 AU173325 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2178, mRNA sequence
Length = 457
Score = 46.1 bits (23), Expect = 0.060
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagat 427
|||||| ||||| | |||||||||||| |||||||||||
Sbjct: 43 aggcttgcgaaccaaaaagaagtacatcggcgtgaagat 5
>gb|AU184520.1|AU184520 AU184520 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2709, mRNA sequence
Length = 455
Score = 46.1 bits (23), Expect = 0.060
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 389 aggcttccgaacaagaaagaagtacattggcgtgaagat 427
|||||| ||||| | |||||||||||| |||||||||||
Sbjct: 41 aggcttgcgaaccaaaaagaagtacatcggcgtgaagat 3
>dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0408D11, ***
SEQUENCING IN PROGRESS ***
Length = 138934
Score = 46.1 bits (23), Expect = 0.060
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1564 gcggtggtgggagacgacgaggtggaggtggtggt 1598
|||||||||| |||||||||| ||||||||||||
Sbjct: 38832 gcggtggtggaggacgacgaggcggaggtggtggt 38866
>dbj|AK108621.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-D04, full
insert sequence
Length = 1399
Score = 46.1 bits (23), Expect = 0.060
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1564 gcggtggtgggagacgacgaggtggaggtggtggt 1598
|||||||||| |||||||||| ||||||||||||
Sbjct: 665 gcggtggtggaggacgacgaggcggaggtggtggt 631
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G03
Length = 106401
Score = 46.1 bits (23), Expect = 0.060
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1564 gcggtggtgggagacgacgaggtggaggtggtggt 1598
|||||||||| |||||||||| ||||||||||||
Sbjct: 45160 gcggtggtggaggacgacgaggcggaggtggtggt 45126
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,355,488
Number of Sequences: 438736
Number of extensions: 2355488
Number of successful extensions: 14946
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14231
Number of HSP's gapped (non-prelim): 700
length of query: 1617
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1595
effective length of database: 2,790,767,724
effective search space: 4451274519780
effective search space used: 4451274519780
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)