BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418861.2.1
(614 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB671826.1|CB671826 OSJNEe05J06.f OSJNEe Oryza sativa (j... 496 e-138
gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloar... 496 e-138
dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA... 496 e-138
ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA 496 e-138
dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA... 480 e-133
gb|CF323745.1|CF323745 HDN--04-K15.g1 OsHDAC1-overexpressin... 458 e-126
gb|C25986.1|C25986 C25986 Rice callus cDNA Oryza sativa (ja... 367 5e-099
gb|AU184519.1|AU184519 AU184519 Rice root Oryza sativa (jap... 313 6e-083
gb|AU032204.1|AU032204 AU032204 Rice root Oryza sativa (jap... 174 4e-041
gb|AACV01015390.1| Oryza sativa (japonica cultivar-group) c... 141 5e-031
dbj|AP003943.3| Oryza sativa (japonica cultivar-group) geno... 141 5e-031
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 141 5e-031
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 141 5e-031
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 141 5e-031
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 141 5e-031
gb|CF329662.1|CF329662 NACL--05-B03.b1 Rice callus plasmid ... 96 3e-017
gb|D24567.1|D24567 RICR2178A Rice root Oryza sativa (japoni... 62 4e-007
ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA 56 2e-005
gb|AACV01016034.1| Oryza sativa (japonica cultivar-group) c... 54 9e-005
dbj|AP003802.2| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 54 9e-005
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
gb|CZ555321.1|CZ555321 M0027188 AS_TRIM_TDNA_B1 Oryza sativ... 52 4e-004
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 52 4e-004
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|AC135599.3| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|AACV01026910.1| Oryza sativa (japonica cultivar-group) C... 42 0.35
>gb|CB671826.1|CB671826 OSJNEe05J06.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05J06 5', mRNA sequence
Length = 670
Score = 496 bits (250), Expect = e-138
Identities = 391/438 (89%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
|||||||||||||||||||| ||||||||||||||||| || || |||||||| ||||||
Sbjct: 92 gtcgatgagtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtcc 151
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 152 aactacacagacatggttaataaatactatgatcttgccaccagcttctatgagtatggt 211
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 212 tggggtgaatccttccactttgctcacagatggaatggagaatccctacgtgaaagcatt 271
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 272 aagcgacatgagcactttcttgcccttcagcttggagtgaaaccaggaatgaaggttttg 331
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
|| || || ||||||||||| |||||||| ||||||||||| | |||||||| |||||
Sbjct: 332 gacgtcggttgtggaataggcggaccactaagagaaattgccaaatttagcttggcttca 391
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
|| || |||||||| ||||| || ||||||||||| |||||||||||||| || || ||
Sbjct: 392 gtcactggattgaacaacaatgagtaccagataactaggggaaaggagcttaatcgggta 451
Query: 537 gcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgat 596
|||||| |||||||||| || || ||||| ||||| |||||||||||||||||||| |
Sbjct: 452 gcaggagttagtggaacttgcgactttgtgaaggcagacttcatgaagatgccgttttct 511
Query: 597 gacaacacttttgatgct 614
|| |||||||||||||||
Sbjct: 512 gataacacttttgatgct 529
>gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloartenol-C24-methyltransferase
mRNA, complete cds
Length = 1629
Score = 496 bits (250), Expect = e-138
Identities = 391/438 (89%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
|||||||||||||||||||| ||||||||||||||||| || || |||||||| ||||||
Sbjct: 253 gtcgatgagtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtcc 312
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 313 aactacacagacatggttaataaatactatgatcttgccaccagcttctatgagtatggt 372
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 373 tggggtgaatccttccactttgctcacagatggaatggagaatccctacgtgaaagcatt 432
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 433 aagcgacatgagcactttcttgcccttcagcttggagtgaaaccaggaatgaaggttttg 492
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
|| || || ||||||||||| |||||||| ||||||||||| | |||||||| |||||
Sbjct: 493 gacgtcggttgtggaataggcggaccactaagagaaattgccaaatttagcttggcttca 552
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
|| || |||||||| ||||| || ||||||||||| |||||||||||||| || || ||
Sbjct: 553 gtcactggattgaacaacaatgagtaccagataactaggggaaaggagcttaatcgggta 612
Query: 537 gcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgat 596
|||||| |||||||||| || || ||||| ||||| |||||||||||||||||||| |
Sbjct: 613 gcaggagttagtggaacttgcgactttgtgaaggcagacttcatgaagatgccgttttct 672
Query: 597 gacaacacttttgatgct 614
|| |||||||||||||||
Sbjct: 673 gataacacttttgatgct 690
>dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149L23, full
insert sequence
Length = 1526
Score = 496 bits (250), Expect = e-138
Identities = 391/438 (89%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
|||||||||||||||||||| ||||||||||||||||| || || |||||||| ||||||
Sbjct: 179 gtcgatgagtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtcc 238
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 239 aactacacagacatggttaataaatactatgatcttgccaccagcttctatgagtatggt 298
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 299 tggggtgaatccttccactttgctcacagatggaatggagaatccctacgtgaaagcatt 358
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 359 aagcgacatgagcactttcttgcccttcagcttggagtgaaaccaggaatgaaggttttg 418
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
|| || || ||||||||||| |||||||| ||||||||||| | |||||||| |||||
Sbjct: 419 gacgtcggttgtggaataggcggaccactaagagaaattgccaaatttagcttggcttca 478
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
|| || |||||||| ||||| || ||||||||||| |||||||||||||| || || ||
Sbjct: 479 gtcactggattgaacaacaatgagtaccagataactaggggaaaggagcttaatcgggta 538
Query: 537 gcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgat 596
|||||| |||||||||| || || ||||| ||||| |||||||||||||||||||| |
Sbjct: 539 gcaggagttagtggaacttgcgactttgtgaaggcagacttcatgaagatgccgttttct 598
Query: 597 gacaacacttttgatgct 614
|| |||||||||||||||
Sbjct: 599 gataacacttttgatgct 616
>ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1525
Score = 496 bits (250), Expect = e-138
Identities = 391/438 (89%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
|||||||||||||||||||| ||||||||||||||||| || || |||||||| ||||||
Sbjct: 179 gtcgatgagtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtcc 238
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 239 aactacacagacatggttaataaatactatgatcttgccaccagcttctatgagtatggt 298
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 299 tggggtgaatccttccactttgctcacagatggaatggagaatccctacgtgaaagcatt 358
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 359 aagcgacatgagcactttcttgcccttcagcttggagtgaaaccaggaatgaaggttttg 418
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
|| || || ||||||||||| |||||||| ||||||||||| | |||||||| |||||
Sbjct: 419 gacgtcggttgtggaataggcggaccactaagagaaattgccaaatttagcttggcttca 478
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
|| || |||||||| ||||| || ||||||||||| |||||||||||||| || || ||
Sbjct: 479 gtcactggattgaacaacaatgagtaccagataactaggggaaaggagcttaatcgggta 538
Query: 537 gcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgat 596
|||||| |||||||||| || || ||||| ||||| |||||||||||||||||||| |
Sbjct: 539 gcaggagttagtggaacttgcgactttgtgaaggcagacttcatgaagatgccgttttct 598
Query: 597 gacaacacttttgatgct 614
|| |||||||||||||||
Sbjct: 599 gataacacttttgatgct 616
>dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D19, full
insert sequence
Length = 2883
Score = 480 bits (242), Expect = e-133
Identities = 383/430 (89%)
Strand = Plus / Plus
Query: 185 gtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaactatac 244
|||||||||||| ||||||||||||||||| || || |||||||| ||||||||||| ||
Sbjct: 1644 gtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtccaactacac 1703
Query: 245 tgatatggttaataaatactatgatcttgccactagcttctatgagtatggttggggtga 304
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1704 agacatggttaataaatactatgatcttgccaccagcttctatgagtatggttggggtga 1763
Query: 305 atccttccactttgctcacagatggaatggagaatccttacgtgaaagcatcaagcgaca 364
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 1764 atccttccactttgctcacagatggaatggagaatccctacgtgaaagcattaagcgaca 1823
Query: 365 tgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttttagatgtggg 424
|||||| ||||||||||| || ||||| |||||||||||||||||||||| || || ||
Sbjct: 1824 tgagcactttcttgcccttcagcttggagtgaaaccaggaatgaaggttttggacgtcgg 1883
Query: 425 ctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttcagttaccgg 484
||||||||||| |||||||| ||||||||||| | |||||||| ||||||| || ||
Sbjct: 1884 ttgtggaataggcggaccactaagagaaattgccaaatttagcttggcttcagtcactgg 1943
Query: 485 attgaataacaacgaataccagataaccaggggaaaggagctcaaccgtttagcaggaat 544
|||||| ||||| || ||||||||||| |||||||||||||| || || |||||||| |
Sbjct: 1944 attgaacaacaatgagtaccagataactaggggaaaggagcttaatcgggtagcaggagt 2003
Query: 545 tagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgatgacaacac 604
||||||||| || || ||||| ||||| |||||||||||||||||||| ||| |||||
Sbjct: 2004 tagtggaacttgcgactttgtgaaggcagacttcatgaagatgccgttttctgataacac 2063
Query: 605 ttttgatgct 614
||||||||||
Sbjct: 2064 ttttgatgct 2073
>gb|CF323745.1|CF323745 HDN--04-K15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-K15, mRNA sequence
Length = 619
Score = 458 bits (231), Expect = e-126
Identities = 364/407 (89%), Gaps = 1/407 (0%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
|||||||||||||||||||| ||||||||||||||||| || || |||||||| ||||||
Sbjct: 213 gtcgatgagtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtcc 272
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatgg- 295
||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 273 aactacacagacatggttaataaatactatgatcttgccaccagcttctatgagtatggg 332
Query: 296 ttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcat 355
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 333 ttggggtgaatccttccactttgctcacagatggaatggagaatccctacgtgaaagcat 392
Query: 356 caagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttt 415
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 393 taagcgacatgagcattttcttgcccttcagcttggagtgaaaccaggaatgaaggtttt 452
Query: 416 agatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttc 475
|| || || ||||||||||| |||||||| ||||||||||| | |||||||| ||||
Sbjct: 453 ggacgtcggttgtggaataggcggaccactaagagaaattgccaaatttagcttggcttc 512
Query: 476 agttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttt 535
||| || |||||||| ||||| || ||||||||||| |||||||||||||| || || |
Sbjct: 513 agtcactggattgaacaacaatgagtaccagataactaggggaaaggagcttaatcgggt 572
Query: 536 agcaggaattagtggaacatgtgattttgtcaaggcggacttcatga 582
||||||| |||||||||| || || ||||| ||||| ||||||||||
Sbjct: 573 agcaggagttagtggaacttgcgactttgtgaaggcagacttcatga 619
>gb|C25986.1|C25986 C25986 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C11423_1A, mRNA sequence
Length = 417
Score = 367 bits (185), Expect = 5e-099
Identities = 329/373 (88%), Gaps = 3/373 (0%)
Strand = Plus / Plus
Query: 222 gaagcaaggaagtccaactatactgatatggttaataaatactatgatcttgccactagc 281
|||||||| ||||||||||| || || ||||||||||||||||||||||||||||| |||
Sbjct: 5 gaagcaagaaagtccaactacacagacatggttaataaatactatgatcttgccaccagc 64
Query: 282 ttctatgagtatggttggggtgaatccttccactttgctcacagatggaatggagaatcc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ttctatgagtatggttggggtgaatccttccactttgctcacagatggaatggagaatcc 124
Query: 342 ttacgtgaaagcatcaagcgacatgagcattttcttgccctgcaacttggtttgaaacca 401
||||||||||||| |||||||||||||| ||||||||||| || ||||| || |||||
Sbjct: 125 ctacgtgaaagcattaagcgacatgagcactttcttgcccttcagcttggagtg-aacca 183
Query: 402 ggaatgaaggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaaga 461
|||||||||||||| || || || ||||||||||| |||||||| ||||||||||| | |
Sbjct: 184 ggaatgaaggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaa 243
Query: 462 tttagctcaacttcagttaccggattgaataacaacgaataccagataacca-ggggaaa 520
||||||| ||||||| || |||||||| ||||| || ||||||||||| | |||||||
Sbjct: 244 tttagcttggcttcagtcactggattgaacaacaatgagtaccagataactagggggaaa 303
Query: 521 ggagctcaaccgttta-gcaggaattagtggaacatgtgattttgtcaaggcggacttca 579
|||||| || || || |||||| ||||||| || || || ||||| ||||| |||||||
Sbjct: 304 ggagcttaatcgggtaggcaggagttagtgggacttgcgactttgttaaggcagacttca 363
Query: 580 tgaagatgccgtt 592
|| ||||||||||
Sbjct: 364 tggagatgccgtt 376
>gb|AU184519.1|AU184519 AU184519 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2709, mRNA sequence
Length = 431
Score = 313 bits (158), Expect = 6e-083
Identities = 194/206 (94%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
|||||||||||||||||||| ||||||||||||||||| || || |||||||| ||||||
Sbjct: 223 gtcgatgagtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtcc 282
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 283 aactacacagacatggttaataaatactatgatcttgccaccagcttctatgagtatggt 342
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 343 tggggtgaatccttccactttgctcacagatggaatggagaatccctacgtgaaagcatt 402
Query: 357 aagcgacatgagcattttcttgccct 382
|||||||||||||| |||||||||||
Sbjct: 403 aagcgacatgagcactttcttgccct 428
>gb|AU032204.1|AU032204 AU032204 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3690_1A, mRNA sequence
Length = 362
Score = 174 bits (88), Expect = 4e-041
Identities = 181/212 (85%)
Strand = Plus / Plus
Query: 403 gaatgaaggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagat 462
||||||||||||| || || || ||||||||||| |||||||| ||||||||||| | ||
Sbjct: 4 gaatgaaggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaat 63
Query: 463 ttagctcaacttcagttaccggattgaataacaacgaataccagataaccaggggaaagg 522
|||||| ||||||| || |||||||| ||||| || ||||||||||| ||||||||||
Sbjct: 64 ttagcttggcttcagtcactggattgaacaacaatgagtaccagataactaggggaaagg 123
Query: 523 agctcaaccgtttagcaggaattagtggaacatgtgattttgtcaaggcggacttcatga 582
|||| || || |||||||| |||||||||| || || ||||| ||||| ||||||||||
Sbjct: 124 agcttaatcgggtagcaggagttagtggaacttgcgactttgtgaaggcagacttcatga 183
Query: 583 agatgccgttcgatgacaacacttttgatgct 614
|||||||||| ||| |||||||||||||||
Sbjct: 184 agatgccgttttctgataacacttttgatgct 215
>gb|AACV01015390.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015390, whole
genome shotgun sequence
Length = 10237
Score = 141 bits (71), Expect = 5e-031
Identities = 74/75 (98%)
Strand = Plus / Minus
Query: 251 ggttaataaatactatgatcttgccactagcttctatgagtatggttggggtgaatcctt 310
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 8311 ggttaataaatactatgatcttgccaccagcttctatgagtatggttggggtgaatcctt 8252
Query: 311 ccactttgctcacag 325
|||||||||||||||
Sbjct: 8251 ccactttgctcacag 8237
Score = 123 bits (62), Expect = 1e-025
Identities = 83/90 (92%)
Strand = Plus / Minus
Query: 324 agatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccctg 383
|||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct: 8119 agatggaatggagaatccctacgtgaaagcattaagcgacatgagcactttcttgccctt 8060
Query: 384 caacttggtttgaaaccaggaatgaaggtt 413
|| ||||| ||||||||||||||||||||
Sbjct: 8059 cagcttggagtgaaaccaggaatgaaggtt 8030
Score = 73.8 bits (37), Expect = 1e-010
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 185 gtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaacta 241
|||||||||||| ||||||||||||||||| || || |||||||| |||||||||||
Sbjct: 8911 gtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtccaacta 8855
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 472 cttcagttaccggattgaataacaacgaataccagataaccaggggaaagg 522
||||||| || |||||||| ||||| || ||||||||||| ||||||||||
Sbjct: 7510 cttcagtcactggattgaacaacaatgagtaccagataactaggggaaagg 7460
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 568 aggcggacttcatgaagatgccgttcgatgacaacacttttgatgct 614
|||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 7022 aggcagacttcatgaagatgccgttttctgataacacttttgatgct 6976
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 409 aggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttag 466
||||||| || || || ||||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 7939 aggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaatttag 7882
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1119_B04
Length = 151721
Score = 141 bits (71), Expect = 5e-031
Identities = 74/75 (98%)
Strand = Plus / Minus
Query: 251 ggttaataaatactatgatcttgccactagcttctatgagtatggttggggtgaatcctt 310
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 93587 ggttaataaatactatgatcttgccaccagcttctatgagtatggttggggtgaatcctt 93528
Query: 311 ccactttgctcacag 325
|||||||||||||||
Sbjct: 93527 ccactttgctcacag 93513
Score = 123 bits (62), Expect = 1e-025
Identities = 83/90 (92%)
Strand = Plus / Minus
Query: 324 agatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccctg 383
|||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct: 93395 agatggaatggagaatccctacgtgaaagcattaagcgacatgagcactttcttgccctt 93336
Query: 384 caacttggtttgaaaccaggaatgaaggtt 413
|| ||||| ||||||||||||||||||||
Sbjct: 93335 cagcttggagtgaaaccaggaatgaaggtt 93306
Score = 73.8 bits (37), Expect = 1e-010
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 185 gtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaacta 241
|||||||||||| ||||||||||||||||| || || |||||||| |||||||||||
Sbjct: 94187 gtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtccaacta 94131
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 472 cttcagttaccggattgaataacaacgaataccagataaccaggggaaagg 522
||||||| || |||||||| ||||| || ||||||||||| ||||||||||
Sbjct: 92786 cttcagtcactggattgaacaacaatgagtaccagataactaggggaaagg 92736
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 568 aggcggacttcatgaagatgccgttcgatgacaacacttttgatgct 614
|||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 92298 aggcagacttcatgaagatgccgttttctgataacacttttgatgct 92252
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 409 aggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttag 466
||||||| || || || ||||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 93215 aggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaatttag 93158
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 141 bits (71), Expect = 5e-031
Identities = 74/75 (98%)
Strand = Plus / Minus
Query: 251 ggttaataaatactatgatcttgccactagcttctatgagtatggttggggtgaatcctt 310
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5742631 ggttaataaatactatgatcttgccaccagcttctatgagtatggttggggtgaatcctt 5742572
Query: 311 ccactttgctcacag 325
|||||||||||||||
Sbjct: 5742571 ccactttgctcacag 5742557
Score = 123 bits (62), Expect = 1e-025
Identities = 83/90 (92%)
Strand = Plus / Minus
Query: 324 agatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccctg 383
|||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct: 5742439 agatggaatggagaatccctacgtgaaagcattaagcgacatgagcactttcttgccctt 5742380
Query: 384 caacttggtttgaaaccaggaatgaaggtt 413
|| ||||| ||||||||||||||||||||
Sbjct: 5742379 cagcttggagtgaaaccaggaatgaaggtt 5742350
Score = 73.8 bits (37), Expect = 1e-010
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 185 gtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaacta 241
|||||||||||| ||||||||||||||||| || || |||||||| |||||||||||
Sbjct: 5743231 gtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtccaacta 5743175
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 472 cttcagttaccggattgaataacaacgaataccagataaccaggggaaagg 522
||||||| || |||||||| ||||| || ||||||||||| ||||||||||
Sbjct: 5741830 cttcagtcactggattgaacaacaatgagtaccagataactaggggaaagg 5741780
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 568 aggcggacttcatgaagatgccgttcgatgacaacacttttgatgct 614
|||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 5741342 aggcagacttcatgaagatgccgttttctgataacacttttgatgct 5741296
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 409 aggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttag 466
||||||| || || || ||||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 5742259 aggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaatttag 5742202
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 141 bits (71), Expect = 5e-031
Identities = 74/75 (98%)
Strand = Plus / Minus
Query: 251 ggttaataaatactatgatcttgccactagcttctatgagtatggttggggtgaatcctt 310
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2877410 ggttaataaatactatgatcttgccaccagcttctatgagtatggttggggtgaatcctt 2877351
Query: 311 ccactttgctcacag 325
|||||||||||||||
Sbjct: 2877350 ccactttgctcacag 2877336
Score = 123 bits (62), Expect = 1e-025
Identities = 83/90 (92%)
Strand = Plus / Minus
Query: 324 agatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccctg 383
|||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct: 2877218 agatggaatggagaatccctacgtgaaagcattaagcgacatgagcactttcttgccctt 2877159
Query: 384 caacttggtttgaaaccaggaatgaaggtt 413
|| ||||| ||||||||||||||||||||
Sbjct: 2877158 cagcttggagtgaaaccaggaatgaaggtt 2877129
Score = 73.8 bits (37), Expect = 1e-010
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 185 gtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaacta 241
|||||||||||| ||||||||||||||||| || || |||||||| |||||||||||
Sbjct: 2878010 gtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtccaacta 2877954
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 472 cttcagttaccggattgaataacaacgaataccagataaccaggggaaagg 522
||||||| || |||||||| ||||| || ||||||||||| ||||||||||
Sbjct: 2876609 cttcagtcactggattgaacaacaatgagtaccagataactaggggaaagg 2876559
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 568 aggcggacttcatgaagatgccgttcgatgacaacacttttgatgct 614
|||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 2876121 aggcagacttcatgaagatgccgttttctgataacacttttgatgct 2876075
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 409 aggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttag 466
||||||| || || || ||||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 2877038 aggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaatttag 2876981
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 141 bits (71), Expect = 5e-031
Identities = 74/75 (98%)
Strand = Plus / Minus
Query: 251 ggttaataaatactatgatcttgccactagcttctatgagtatggttggggtgaatcctt 310
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5694159 ggttaataaatactatgatcttgccaccagcttctatgagtatggttggggtgaatcctt 5694100
Query: 311 ccactttgctcacag 325
|||||||||||||||
Sbjct: 5694099 ccactttgctcacag 5694085
Score = 123 bits (62), Expect = 1e-025
Identities = 83/90 (92%)
Strand = Plus / Minus
Query: 324 agatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccctg 383
|||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct: 5693967 agatggaatggagaatccctacgtgaaagcattaagcgacatgagcactttcttgccctt 5693908
Query: 384 caacttggtttgaaaccaggaatgaaggtt 413
|| ||||| ||||||||||||||||||||
Sbjct: 5693907 cagcttggagtgaaaccaggaatgaaggtt 5693878
Score = 73.8 bits (37), Expect = 1e-010
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 185 gtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaacta 241
|||||||||||| ||||||||||||||||| || || |||||||| |||||||||||
Sbjct: 5694759 gtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtccaacta 5694703
Score = 54.0 bits (27), Expect = 9e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttctt 377
||||| ||||||| |||| | ||||||||||||||| |||||||||| ||||||
Sbjct: 14457908 cagatagaatggatgatccctgcgtgaaagcatcaagtgacatgagcactttctt 14457962
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 472 cttcagttaccggattgaataacaacgaataccagataaccaggggaaagg 522
||||||| || |||||||| ||||| || ||||||||||| ||||||||||
Sbjct: 5693358 cttcagtcactggattgaacaacaatgagtaccagataactaggggaaagg 5693308
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 568 aggcggacttcatgaagatgccgttcgatgacaacacttttgatgct 614
|||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 5692870 aggcagacttcatgaagatgccgttttctgataacacttttgatgct 5692824
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 409 aggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttag 466
||||||| || || || ||||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 5693787 aggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaatttag 5693730
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 141 bits (71), Expect = 5e-031
Identities = 74/75 (98%)
Strand = Plus / Minus
Query: 251 ggttaataaatactatgatcttgccactagcttctatgagtatggttggggtgaatcctt 310
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5786559 ggttaataaatactatgatcttgccaccagcttctatgagtatggttggggtgaatcctt 5786500
Query: 311 ccactttgctcacag 325
|||||||||||||||
Sbjct: 5786499 ccactttgctcacag 5786485
Score = 123 bits (62), Expect = 1e-025
Identities = 83/90 (92%)
Strand = Plus / Minus
Query: 324 agatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccctg 383
|||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct: 5786367 agatggaatggagaatccctacgtgaaagcattaagcgacatgagcactttcttgccctt 5786308
Query: 384 caacttggtttgaaaccaggaatgaaggtt 413
|| ||||| ||||||||||||||||||||
Sbjct: 5786307 cagcttggagtgaaaccaggaatgaaggtt 5786278
Score = 73.8 bits (37), Expect = 1e-010
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 185 gtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaacta 241
|||||||||||| ||||||||||||||||| || || |||||||| |||||||||||
Sbjct: 5787159 gtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtccaacta 5787103
Score = 54.0 bits (27), Expect = 9e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttctt 377
||||| ||||||| |||| | ||||||||||||||| |||||||||| ||||||
Sbjct: 15399418 cagatagaatggatgatccctgcgtgaaagcatcaagtgacatgagcactttctt 15399472
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 472 cttcagttaccggattgaataacaacgaataccagataaccaggggaaagg 522
||||||| || |||||||| ||||| || ||||||||||| ||||||||||
Sbjct: 5785758 cttcagtcactggattgaacaacaatgagtaccagataactaggggaaagg 5785708
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 568 aggcggacttcatgaagatgccgttcgatgacaacacttttgatgct 614
|||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 5785270 aggcagacttcatgaagatgccgttttctgataacacttttgatgct 5785224
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 409 aggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttag 466
||||||| || || || ||||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 5786187 aggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaatttag 5786130
>gb|CF329662.1|CF329662 NACL--05-B03.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--05-B03, mRNA sequence
Length = 560
Score = 95.6 bits (48), Expect = 3e-017
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 507 ataaccaggggaaaggagctcaaccgtttagcaggaattagtggaacatgtgattttgtc 566
||||| |||||||||||||| || || |||||||| |||||||||| || || |||||
Sbjct: 25 ataactaggggaaaggagcttaatcgggtagcaggagttagtggaacttgcgactttgtg 84
Query: 567 aaggcggacttcatgaagatgccgttcgatgacaacacttttgatgct 614
||||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 85 aaggcagacttcatgaagatgccgttttctgataacacttttgatgct 132
>gb|D24567.1|D24567 RICR2178A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2178_1A, mRNA sequence
Length = 259
Score = 61.9 bits (31), Expect = 4e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagg 214
|||||||||||| ||||||| |||||||||||||||||
Sbjct: 219 gtcgatgagtatnagaaataccatggatactatggagg 256
>ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 993
Score = 56.0 bits (28), Expect = 2e-005
Identities = 163/208 (78%)
Strand = Plus / Plus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| | |||||| | ||||| |||||| | ||||| |||||||||||||| ||| |
Sbjct: 168 cagatggcaaggagaaactttacgcgaaagccttaagcgtcatgagcattttctggcctt 227
Query: 383 gcaacttggtttgaaaccaggaatgaaggttttagatgtgggctgtggaataggtggacc 442
|||||| || | || || |||||||| |||| ||||| ||||| || || |||||
Sbjct: 228 gcaactcggcctcaagaagggcatgaaggtcctagacgtggggtgtggcattggaggacc 287
Query: 443 actgagagaaattgcaagatttagctcaacttcagttaccggattgaataacaacgaata 502
||||||| ||||| ||||| |||||| | || || || ||| |||| ||||| | ||
Sbjct: 288 cttgagagagattgccagattcagctcagcatcggtgactggactgaacaacaatgcgta 347
Query: 503 ccagataaccaggggaaaggagctcaac 530
||||||| | ||||| ||||| ||||||
Sbjct: 348 ccagatatcaaggggcaaggaactcaac 375
Score = 42.1 bits (21), Expect = 0.35
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 561 tttgtcaaggcggacttcatgaagatgcc 589
||||||||||| ||||||||||| |||||
Sbjct: 406 tttgtcaaggctgacttcatgaacatgcc 434
>gb|AACV01016034.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016034, whole
genome shotgun sequence
Length = 15851
Score = 54.0 bits (27), Expect = 9e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttctt 377
||||| ||||||| |||| | ||||||||||||||| |||||||||| ||||||
Sbjct: 13586 cagatagaatggatgatccctgcgtgaaagcatcaagtgacatgagcactttctt 13640
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1047_A06
Length = 111673
Score = 54.0 bits (27), Expect = 9e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttctt 377
||||| ||||||| |||| | ||||||||||||||| |||||||||| ||||||
Sbjct: 106417 cagatagaatggatgatccctgcgtgaaagcatcaagtgacatgagcactttctt 106471
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 54.0 bits (27), Expect = 9e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttctt 377
||||| ||||||| |||| | ||||||||||||||| |||||||||| ||||||
Sbjct: 3022493 cagatagaatggatgatccctgcgtgaaagcatcaagtgacatgagcactttctt 3022547
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 54.0 bits (27), Expect = 9e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttctt 377
||||| ||||||| |||| | ||||||||||||||| |||||||||| ||||||
Sbjct: 1058469 cagatagaatggatgatccctgcgtgaaagcatcaagtgacatgagcactttctt 1058523
>gb|CZ555321.1|CZ555321 M0027188 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0027188, DNA sequence
Length = 452
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 573 gacttcatgaagatgccgttcgatgacaacacttttgatgct 614
|||||||||||||||||||| ||| |||||||||||||||
Sbjct: 386 gacttcatgaagatgccgttttctgataacacttttgatgct 345
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
sequence
Length = 154555
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| | |||||| | ||||| |||||| | ||||| |||||||||||||| ||| |
Sbjct: 43352 cagatggcaaggagaaactttacgcgaaagccttaagcgtcatgagcattttctggcctt 43411
Query: 383 gcaact 388
||||||
Sbjct: 43412 gcaact 43417
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| |||||||| | ||||| |||||| | ||||| | ||||||||||| |||||
Sbjct: 8150 cagatggcatggagaaactttacgcgaaagccttaagcgccgggagcattttctggccct 8091
Query: 383 gcaact 388
||||||
Sbjct: 8090 gcaact 8085
>gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008131, whole
genome shotgun sequence
Length = 26815
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| | |||||| | ||||| |||||| | ||||| |||||||||||||| ||| |
Sbjct: 6988 cagatggcaaggagaaactttacgcgaaagccttaagcgtcatgagcattttctggcctt 7047
Query: 383 gcaact 388
||||||
Sbjct: 7048 gcaact 7053
>gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022880, whole
genome shotgun sequence
Length = 10770
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| |||||||| | ||||| |||||| | ||||| | ||||||||||| |||||
Sbjct: 2115 cagatggcatggagaaactttacgcgaaagccttaagcgccgggagcattttctggccct 2174
Query: 383 gcaact 388
||||||
Sbjct: 2175 gcaact 2180
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| | |||||| | ||||| |||||| | ||||| |||||||||||||| ||| |
Sbjct: 111204 cagatggcaaggagaaactttacgcgaaagccttaagcgtcatgagcattttctggcctt 111145
Query: 383 gcaact 388
||||||
Sbjct: 111144 gcaact 111139
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| |||||||| | ||||| |||||| | ||||| | ||||||||||| |||||
Sbjct: 1964304 cagatggcatggagaaactttacgcgaaagccttaagcgccgggagcattttctggccct 1964245
Query: 383 gcaact 388
||||||
Sbjct: 1964244 gcaact 1964239
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| | |||||| | ||||| |||||| | ||||| |||||||||||||| ||| |
Sbjct: 7170682 cagatggcaaggagaaactttacgcgaaagccttaagcgtcatgagcattttctggcctt 7170623
Query: 383 gcaact 388
||||||
Sbjct: 7170622 gcaact 7170617
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| |||||||| | ||||| |||||| | ||||| | ||||||||||| |||||
Sbjct: 9819348 cagatggcatggagaaactttacgcgaaagccttaagcgccgggagcattttctggccct 9819289
Query: 383 gcaact 388
||||||
Sbjct: 9819288 gcaact 9819283
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| | |||||| | ||||| |||||| | ||||| |||||||||||||| ||| |
Sbjct: 34436845 cagatggcaaggagaaactttacgcgaaagccttaagcgtcatgagcattttctggcctt 34436786
Query: 383 gcaact 388
||||||
Sbjct: 34436785 gcaact 34436780
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| | |||||| | ||||| |||||| | ||||| |||||||||||||| ||| |
Sbjct: 33545269 cagatggcaaggagaaactttacgcgaaagccttaagcgtcatgagcattttctggcctt 33545210
Query: 383 gcaact 388
||||||
Sbjct: 33545209 gcaact 33545204
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| |||||||| | ||||| |||||| | ||||| | ||||||||||| |||||
Sbjct: 10818630 cagatggcatggagaaactttacgcgaaagccttaagcgccgggagcattttctggccct 10818571
Query: 383 gcaact 388
||||||
Sbjct: 10818570 gcaact 10818565
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| | |||||| | ||||| |||||| | ||||| |||||||||||||| ||| |
Sbjct: 33454759 cagatggcaaggagaaactttacgcgaaagccttaagcgtcatgagcattttctggcctt 33454700
Query: 383 gcaact 388
||||||
Sbjct: 33454699 gcaact 33454694
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0045P14, complete sequence
Length = 121894
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| |||||||| | ||||| |||||| | ||||| | ||||||||||| |||||
Sbjct: 8150 cagatggcatggagaaactttacgcgaaagccttaagcgccgggagcattttctggccct 8091
Query: 383 gcaact 388
||||||
Sbjct: 8090 gcaact 8085
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 52.0 bits (26), Expect = 4e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 323 cagatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccct 382
||||||| |||||||| | ||||| |||||| | ||||| | ||||||||||| |||||
Sbjct: 10897819 cagatggcatggagaaactttacgcgaaagccttaagcgccgggagcattttctggccct 10897760
Query: 383 gcaact 388
||||||
Sbjct: 10897759 gcaact 10897754
>gb|AACV01026910.1| Oryza sativa (japonica cultivar-group) Ctg026910, whole genome
shotgun sequence
Length = 9829
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 34 ccaccaccgccgagcgcgagc 54
|||||||||||||||||||||
Sbjct: 1936 ccaccaccgccgagcgcgagc 1956
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 945,560
Number of Sequences: 438736
Number of extensions: 945560
Number of successful extensions: 22532
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21755
Number of HSP's gapped (non-prelim): 775
length of query: 614
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 593
effective length of database: 2,791,206,460
effective search space: 1655185430780
effective search space used: 1655185430780
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)