BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405245.2.2
(616 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV723179.1|CV723179 root--02-L17.g1 Rice root lambda pha... 319 1e-084
dbj|AK098880.1| Oryza sativa (japonica cultivar-group) cDNA... 319 1e-084
gb|AC079887.17| Oryza sativa (japonica cultivar-group) chro... 319 1e-084
gb|AACV01007956.1| Oryza sativa (japonica cultivar-group) c... 319 1e-084
ref|XM_469834.1| Oryza sativa (japonica cultivar-group), mRNA 319 1e-084
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 319 1e-084
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 319 1e-084
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 319 1e-084
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 319 1e-084
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 319 1e-084
gb|CF332318.1|CF332318 NACL--08-M12.g1 Rice callus plasmid ... 295 1e-077
gb|CF276274.1|CF276274 14ETL--01-F21.g1 Rice etiolated leaf... 264 5e-068
gb|CF296282.1|CF296282 30DGS--06-J07.b1 Rice leaf plasmid c... 260 8e-067
gb|AQ872471.1|AQ872471 nbeb0048N21f CUGI Rice BAC Library (... 226 1e-056
gb|AU077571.1|AU077571 AU077571 Rice callus Oryza sativa (j... 226 1e-056
gb|CB000151.1|CB000151 S345X_G06 Rice cold stress germinati... 226 1e-056
dbj|AK104003.1| Oryza sativa (japonica cultivar-group) cDNA... 226 1e-056
emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC O... 226 1e-056
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 226 1e-056
gb|AACV01024705.1| Oryza sativa (japonica cultivar-group) c... 226 1e-056
gb|CH401275.1| Oryza sativa (japonica cultivar-group) chrom... 226 1e-056
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 226 1e-056
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 226 1e-056
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 226 1e-056
dbj|AK105768.1| Oryza sativa (japonica cultivar-group) cDNA... 218 3e-054
gb|C91768.1|C91768 C91768 Rice panicle shorter than 3cm Ory... 216 1e-053
dbj|AK099096.1| Oryza sativa (japonica cultivar-group) cDNA... 192 2e-046
dbj|AK103919.1| Oryza sativa (japonica cultivar-group) cDNA... 192 2e-046
gb|CF589243.1|CF589243 EST00G12 Subtracted cDNA library of ... 176 9e-042
gb|AU101434.1|AU101434 AU101434 Rice panicle shorter than 3... 170 6e-040
gb|AU066132.1|AU066132 AU066132 Rice shoot Oryza sativa (ja... 153 1e-034
gb|AC137999.2| Oryza sativa chromosome 3 BAC OSJNBa0020H02 ... 141 5e-031
ref|XM_468764.1| Oryza sativa (japonica cultivar-group), mRNA 141 5e-031
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 141 5e-031
gb|AACV01006954.1| Oryza sativa (japonica cultivar-group) c... 137 8e-030
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 137 8e-030
gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 ... 117 7e-024
gb|AACV01007276.1| Oryza sativa (japonica cultivar-group) c... 117 7e-024
ref|NT_107174.1| Oryza sativa (japonica cultivar-group) 117 7e-024
gb|AU162811.1|AU162811 AU162811 Rice green shoot Oryza sati... 105 3e-020
gb|CF323071.1|CF323071 HDN--02-N13.g1 OsHDAC1-overexpressin... 68 6e-009
gb|D24971.1|D24971 RICR2871A Rice root Oryza sativa (japoni... 62 4e-007
gb|AU033317.1|AU033317 AU033317 Rice shoot Oryza sativa (ja... 50 0.001
gb|CV722232.1|CV722232 YBH--06-O24.b1 Rice before heading y... 48 0.006
gb|AU174850.1|AU174850 AU174850 Rice cDNA from leaf Oryza s... 44 0.088
>gb|CV723179.1|CV723179 root--02-L17.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--02-L17, mRNA sequence
Length = 481
Score = 319 bits (161), Expect = 1e-084
Identities = 243/269 (90%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 426 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 367
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| |||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct: 366 gccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctc 307
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 306 gactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaac 247
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 187
Query: 242 ctcgacgcctggcttaaggacatgcccgc 270
|||||||||||||| ||||||||||||||
Sbjct: 186 ctcgacgcctggctcaaggacatgcccgc 158
>dbj|AK098880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F12, full
insert sequence
Length = 1946
Score = 319 bits (161), Expect = 1e-084
Identities = 243/269 (90%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 1277 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 1336
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| |||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct: 1337 gccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctc 1396
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1397 gactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaac 1456
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 1457 gtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 1516
Query: 242 ctcgacgcctggcttaaggacatgcccgc 270
|||||||||||||| ||||||||||||||
Sbjct: 1517 ctcgacgcctggctcaaggacatgcccgc 1545
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01
genomic sequence, complete sequence
Length = 168759
Score = 319 bits (161), Expect = 1e-084
Identities = 243/269 (90%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 82286 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 82227
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| |||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct: 82226 gccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctc 82167
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 82166 gactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaac 82107
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 82106 gtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 82047
Query: 242 ctcgacgcctggcttaaggacatgcccgc 270
|||||||||||||| ||||||||||||||
Sbjct: 82046 ctcgacgcctggctcaaggacatgcccgc 82018
>gb|AACV01007956.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007956, whole
genome shotgun sequence
Length = 44568
Score = 319 bits (161), Expect = 1e-084
Identities = 243/269 (90%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 35919 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 35978
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| |||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct: 35979 gccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctc 36038
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 36039 gactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaac 36098
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 36099 gtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 36158
Query: 242 ctcgacgcctggcttaaggacatgcccgc 270
|||||||||||||| ||||||||||||||
Sbjct: 36159 ctcgacgcctggctcaaggacatgcccgc 36187
>ref|XM_469834.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2058
Score = 319 bits (161), Expect = 1e-084
Identities = 243/269 (90%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 1372 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 1431
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| |||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct: 1432 gccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctc 1491
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1492 gactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaac 1551
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 1552 gtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 1611
Query: 242 ctcgacgcctggcttaaggacatgcccgc 270
|||||||||||||| ||||||||||||||
Sbjct: 1612 ctcgacgcctggctcaaggacatgcccgc 1640
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 319 bits (161), Expect = 1e-084
Identities = 243/269 (90%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 193185 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 193244
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| |||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct: 193245 gccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctc 193304
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 193305 gactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaac 193364
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 193365 gtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 193424
Query: 242 ctcgacgcctggcttaaggacatgcccgc 270
|||||||||||||| ||||||||||||||
Sbjct: 193425 ctcgacgcctggctcaaggacatgcccgc 193453
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 319 bits (161), Expect = 1e-084
Identities = 243/269 (90%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 4658469 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 4658528
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| |||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct: 4658529 gccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctc 4658588
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 4658589 gactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaac 4658648
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 4658649 gtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 4658708
Query: 242 ctcgacgcctggcttaaggacatgcccgc 270
|||||||||||||| ||||||||||||||
Sbjct: 4658709 ctcgacgcctggctcaaggacatgcccgc 4658737
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 319 bits (161), Expect = 1e-084
Identities = 243/269 (90%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 31924632 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 31924691
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| |||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct: 31924692 gccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctc 31924751
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 31924752 gactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaac 31924811
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 31924812 gtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 31924871
Query: 242 ctcgacgcctggcttaaggacatgcccgc 270
|||||||||||||| ||||||||||||||
Sbjct: 31924872 ctcgacgcctggctcaaggacatgcccgc 31924900
Score = 137 bits (69), Expect = 8e-030
Identities = 183/221 (82%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| |||||||| ||| || ||||||||| || |||||||| || |||||||||
Sbjct: 18393288 tgggacgcctacgaggcggccagggccgcccacggcgtctgcatcctcactgagtgggac 18393347
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
||||||| || ||| |||||| || ||||| || ||||||||||| || |||||
Sbjct: 18393348 gagttcaggagcctcgactacgcgaggatctacgggggaatgcagaagccggcgttcgtg 18393407
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
|||||||| |||||| | | ||| | |||||| |||||||||| || ||||||||||||
Sbjct: 18393408 ttcgacgggcgcaacgtggttgacgctgagaagctgagggagattggattcatcgtctac 18393467
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| |||||||| ||||| |||||||| |||||||||||
Sbjct: 18393468 tccattggcaagcctctcgatgcctggctcaaggacatgcc 18393508
Score = 117 bits (59), Expect = 7e-024
Identities = 158/191 (82%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||||| |||||||||||||||||| || ||||||||| ||| | |||| |
Sbjct: 23087965 tgcatcctcaccgagtgggacgagttccgccggctcgactaccagcggatgtacgacgcc 23087906
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
||||| ||||| |||||| ||||||||||||||||| || |||||||||| ||| | |
Sbjct: 23087905 atgcacaagccggccttcctcttcgacggccgcaacgtcgtcgacccggacaagctccgc 23087846
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||||||| ||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 23087845 cgcatcggcttcgtcgtctactccatcggcaagccgctcgaccactggctcagggacatg 23087786
Query: 266 cccgcggtcgc 276
||||| |||||
Sbjct: 23087785 cccgccgtcgc 23087775
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 319 bits (161), Expect = 1e-084
Identities = 243/269 (90%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 31104301 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 31104360
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| |||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct: 31104361 gccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctc 31104420
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 31104421 gactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaac 31104480
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 31104481 gtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 31104540
Query: 242 ctcgacgcctggcttaaggacatgcccgc 270
|||||||||||||| ||||||||||||||
Sbjct: 31104541 ctcgacgcctggctcaaggacatgcccgc 31104569
Score = 141 bits (71), Expect = 5e-031
Identities = 209/255 (81%)
Strand = Plus / Plus
Query: 13 gagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgaggccaccaaggg 72
||||||||||||||| || |||||| | || |||||||| |||||||| ||| ||
Sbjct: 17581769 gagccccacggccatcaagcaggtgtccgtcgcctgggacgcctacgaggcggccagggc 17581828
Query: 73 cgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctggactaccagaa 132
||||||||| || |||||||| || |||||||||||||||| || ||| |||||| ||
Sbjct: 17581829 cgcccacggcgtctgcatcctcactgagtgggacgagttcaggagcctcgactacgcgag 17581888
Query: 133 gatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaacatcatcgaccc 192
||||| || ||||||||||| || ||||| |||||||| |||||| | | ||| |
Sbjct: 17581889 gatctacgggggaatgcagaagccggcgttcgtgttcgacgggcgcaacgtggttgacgc 17581948
Query: 193 ggagaagttgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctg 252
|||||| |||||||||| || ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 17581949 tgagaagctgagggagattggattcatcgtctactccattggcaagcctctcgatgcctg 17582008
Query: 253 gcttaaggacatgcc 267
||| |||||||||||
Sbjct: 17582009 gctcaaggacatgcc 17582023
Score = 117 bits (59), Expect = 7e-024
Identities = 158/191 (82%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||||| |||||||||||||||||| || ||||||||| ||| | |||| |
Sbjct: 22442721 tgcatcctcaccgagtgggacgagttccgccggctcgactaccagcggatgtacgacgcc 22442662
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
||||| ||||| |||||| ||||||||||||||||| || |||||||||| ||| | |
Sbjct: 22442661 atgcacaagccggccttcctcttcgacggccgcaacgtcgtcgacccggacaagctccgc 22442602
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||||||| ||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 22442601 cgcatcggcttcgtcgtctactccatcggcaagccgctcgaccactggctcagggacatg 22442542
Query: 266 cccgcggtcgc 276
||||| |||||
Sbjct: 22442541 cccgccgtcgc 22442531
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 319 bits (161), Expect = 1e-084
Identities = 243/269 (90%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 31013778 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 31013837
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| |||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct: 31013838 gccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctc 31013897
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 31013898 gactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaac 31013957
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 31013958 gtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 31014017
Query: 242 ctcgacgcctggcttaaggacatgcccgc 270
|||||||||||||| ||||||||||||||
Sbjct: 31014018 ctcgacgcctggctcaaggacatgcccgc 31014046
Score = 141 bits (71), Expect = 5e-031
Identities = 209/255 (81%)
Strand = Plus / Plus
Query: 13 gagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgaggccaccaaggg 72
||||||||||||||| || |||||| | || |||||||| |||||||| ||| ||
Sbjct: 17588228 gagccccacggccatcaagcaggtgtccgtcgcctgggacgcctacgaggcggccagggc 17588287
Query: 73 cgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctggactaccagaa 132
||||||||| || |||||||| || |||||||||||||||| || ||| |||||| ||
Sbjct: 17588288 cgcccacggcgtctgcatcctcactgagtgggacgagttcaggagcctcgactacgcgag 17588347
Query: 133 gatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaacatcatcgaccc 192
||||| || ||||||||||| || ||||| |||||||| |||||| | | ||| |
Sbjct: 17588348 gatctacgggggaatgcagaagccggcgttcgtgttcgacgggcgcaacgtggttgacgc 17588407
Query: 193 ggagaagttgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctg 252
|||||| |||||||||| || ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 17588408 tgagaagctgagggagattggattcatcgtctactccattggcaagcctctcgatgcctg 17588467
Query: 253 gcttaaggacatgcc 267
||| |||||||||||
Sbjct: 17588468 gctcaaggacatgcc 17588482
Score = 117 bits (59), Expect = 7e-024
Identities = 158/191 (82%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||||| |||||||||||||||||| || ||||||||| ||| | |||| |
Sbjct: 22449692 tgcatcctcaccgagtgggacgagttccgccggctcgactaccagcggatgtacgacgcc 22449633
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
||||| ||||| |||||| ||||||||||||||||| || |||||||||| ||| | |
Sbjct: 22449632 atgcacaagccggccttcctcttcgacggccgcaacgtcgtcgacccggacaagctccgc 22449573
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||||||| ||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 22449572 cgcatcggcttcgtcgtctactccatcggcaagccgctcgaccactggctcagggacatg 22449513
Query: 266 cccgcggtcgc 276
||||| |||||
Sbjct: 22449512 cccgccgtcgc 22449502
>gb|CF332318.1|CF332318 NACL--08-M12.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--08-M12, mRNA sequence
Length = 523
Score = 295 bits (149), Expect = 1e-077
Identities = 240/269 (89%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 380 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 321
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| | |||| || | |||||||| ||||||||||||||||| ||||| ||
Sbjct: 320 gccaccaagaactcccatggcctttgcatcctcaccgagtgggacgagtttaagacgctc 261
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||||||||||| | |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 260 gactaccagaagatttacgacaacatgcagaagccggcgttcgtcttcgacggccgcaac 201
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 141
Query: 242 ctcgacgcctggcttaaggacatgcccgc 270
|||||||||||||| ||||||||||||||
Sbjct: 140 ctcgacgcctggctcaaggacatgcccgc 112
>gb|CF276274.1|CF276274 14ETL--01-F21.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-F21, mRNA sequence
Length = 399
Score = 264 bits (133), Expect = 5e-068
Identities = 172/185 (92%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||||| ||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct: 398 tgcatcctcaccgagtgggacgagttcaagacgctcgactaccagaagatctacgacaac 339
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
||||||||||| || ||||||||||||||||||||| | |||||||||||||| | |||
Sbjct: 338 atgcagaagccggcgttcgtcttcgacggccgcaacgttgtcgacccggagaagctcagg 279
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 278 gagatcggcttcatcgtttactccatcggcaagccgctcgacgcctggctcaaggacatg 219
Query: 266 cccgc 270
|||||
Sbjct: 218 cccgc 214
>gb|CF296282.1|CF296282 30DGS--06-J07.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--06-J07, mRNA sequence
Length = 499
Score = 260 bits (131), Expect = 8e-067
Identities = 234/267 (87%), Gaps = 1/267 (0%)
Strand = Plus / Minus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 494 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 435
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| |||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct: 434 gccaccaagaacgcccatggcctttgcatcctcaccgagtgggacgagttcaagacgctc 375
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||||||||||| | |||||||||||||||||| || || || || ||||||||||||
Sbjct: 374 gactaccagaagatttacgacaacatgcagaagccggcgtttgtttttgacggccgcaac 315
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
| |||||||||||||| | |||||||||||||||||||| ||||||||||||||||||
Sbjct: 314 gttgtcgacccggagaagctcagggagatcggcttcatcgtttactccatcggcaagccg 255
Query: 242 ctcgacgcctggcttaaggacatgccc 268
|| ||||||||||| ||||||||||||
Sbjct: 254 cttgacgcctggctcaaggacatgccc 228
>gb|AQ872471.1|AQ872471 nbeb0048N21f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0048N21f, DNA sequence
Length = 763
Score = 226 bits (114), Expect = 1e-056
Identities = 201/230 (87%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||||| ||||| || || |||||||| |||||||||
Sbjct: 541 gtgtgggatgcatatgaggccaccaagggggcccatggtgtctgcatcctcaccgagtgg 482
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 481 gacgagttcaagaccttggactaccagaagatctttgacaacatgcagaagcctgcattc 422
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||| || || ||||| | |||| | |||||| | |||||||| || |||||||||
Sbjct: 421 gtctttgatgggcgcaatgtggtcgatgccgagaagctcagggagattgggttcatcgtc 362
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggt 273
|||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 361 tactccatcggcaagccgcttgatgcctggctcaaggacatgcccgcggt 312
>gb|AU077571.1|AU077571 AU077571 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2433_2Z, mRNA sequence
Length = 698
Score = 226 bits (114), Expect = 1e-056
Identities = 201/230 (87%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||||| ||||| || || |||||||| |||||||||
Sbjct: 150 gtgtgggatgcatatgaggccaccaagggggcccatggtgtctgcatcctcaccgagtgg 209
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 210 gacgagttcaagaccttggactaccagaagatctttgacaacatgcagaagcctgcattc 269
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||| || || ||||| | |||| | |||||| | |||||||| || |||||||||
Sbjct: 270 gtctttgatgggcgcaatgtggtcgatgccgagaagctcagggagattgggttcatcgtc 329
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggt 273
|||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 330 tactccatcggcaagccgcttgatgcctggctcaaggacatgcccgcggt 379
>gb|CB000151.1|CB000151 S345X_G06 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 598
Score = 226 bits (114), Expect = 1e-056
Identities = 201/230 (87%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||||| ||||| || || |||||||| |||||||||
Sbjct: 182 gtgtgggatgcatatgaggccaccaagggggcccatggtgtctgcatcctcaccgagtgg 241
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 242 gacgagttcaagaccttggactaccagaagatctttgacaacatgcagaagcctgcattc 301
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||| || || ||||| | |||| | |||||| | |||||||| || |||||||||
Sbjct: 302 gtctttgatgggcgcaatgtggtcgatgccgagaagctcagggagattgggttcatcgtc 361
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggt 273
|||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 362 tactccatcggcaagccgcttgatgcctggctcaaggacatgcccgcggt 411
>dbj|AK104003.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H11, full
insert sequence
Length = 1852
Score = 226 bits (114), Expect = 1e-056
Identities = 201/230 (87%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||||| ||||| || || |||||||| |||||||||
Sbjct: 1327 gtgtgggatgcatatgaggccaccaagggggcccatggtgtctgcatcctcaccgagtgg 1386
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 1387 gacgagttcaagaccttggactaccagaagatctttgacaacatgcagaagcctgcattc 1446
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||| || || ||||| | |||| | |||||| | |||||||| || |||||||||
Sbjct: 1447 gtctttgatgggcgcaatgtggtcgatgccgagaagctcagggagattgggttcatcgtc 1506
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggt 273
|||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 1507 tactccatcggcaagccgcttgatgcctggctcaaggacatgcccgcggt 1556
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 174521
Score = 226 bits (114), Expect = 1e-056
Identities = 201/230 (87%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||||| ||||| || || |||||||| |||||||||
Sbjct: 147645 gtgtgggatgcatatgaggccaccaagggggcccatggtgtctgcatcctcaccgagtgg 147586
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 147585 gacgagttcaagaccttggactaccagaagatctttgacaacatgcagaagcctgcattc 147526
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||| || || ||||| | |||| | |||||| | |||||||| || |||||||||
Sbjct: 147525 gtctttgatgggcgcaatgtggtcgatgccgagaagctcagggagattgggttcatcgtc 147466
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggt 273
|||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 147465 tactccatcggcaagccgcttgatgcctggctcaaggacatgcccgcggt 147416
Score = 192 bits (97), Expect = 2e-046
Identities = 202/237 (85%)
Strand = Plus / Minus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
||||| ||||| |||||||||||||| ||||| || |||||||||| || |||||||||
Sbjct: 141766 tgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggac 141707
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||||| |||||||||||| |||||| |||||||||||||| || || || |||
Sbjct: 141706 gagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtc 141647
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || ||||| | |||| || |||||| | |||||||| |||||||| ||||||
Sbjct: 141646 ttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctac 141587
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattc 283
|| |||||||||||||| || || ||||| || |||||||||||||| || ||||||
Sbjct: 141586 tctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataattc 141530
>ref|NT_107148.1| Oryza sativa (japonica cultivar-group)
Length = 1822333
Score = 226 bits (114), Expect = 1e-056
Identities = 201/230 (87%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||||| ||||| || || |||||||| |||||||||
Sbjct: 1249864 gtgtgggatgcatatgaggccaccaagggggcccatggtgtctgcatcctcaccgagtgg 1249923
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 1249924 gacgagttcaagaccttggactaccagaagatctttgacaacatgcagaagcctgcattc 1249983
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||| || || ||||| | |||| | |||||| | |||||||| || |||||||||
Sbjct: 1249984 gtctttgatgggcgcaatgtggtcgatgccgagaagctcagggagattgggttcatcgtc 1250043
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggt 273
|||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 1250044 tactccatcggcaagccgcttgatgcctggctcaaggacatgcccgcggt 1250093
Score = 192 bits (97), Expect = 2e-046
Identities = 202/237 (85%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
||||| ||||| |||||||||||||| ||||| || |||||||||| || |||||||||
Sbjct: 1255743 tgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggac 1255802
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||||| |||||||||||| |||||| |||||||||||||| || || || |||
Sbjct: 1255803 gagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtc 1255862
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || ||||| | |||| || |||||| | |||||||| |||||||| ||||||
Sbjct: 1255863 ttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctac 1255922
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattc 283
|| |||||||||||||| || || ||||| || |||||||||||||| || ||||||
Sbjct: 1255923 tctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataattc 1255979
>gb|AACV01024705.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024705, whole
genome shotgun sequence
Length = 64049
Score = 226 bits (114), Expect = 1e-056
Identities = 201/230 (87%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||||| ||||| || || |||||||| |||||||||
Sbjct: 37619 gtgtgggatgcatatgaggccaccaagggggcccatggtgtctgcatcctcaccgagtgg 37678
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 37679 gacgagttcaagaccttggactaccagaagatctttgacaacatgcagaagcctgcattc 37738
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||| || || ||||| | |||| | |||||| | |||||||| || |||||||||
Sbjct: 37739 gtctttgatgggcgcaatgtggtcgatgccgagaagctcagggagattgggttcatcgtc 37798
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggt 273
|||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 37799 tactccatcggcaagccgcttgatgcctggctcaaggacatgcccgcggt 37848
Score = 192 bits (97), Expect = 2e-046
Identities = 202/237 (85%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
||||| ||||| |||||||||||||| ||||| || |||||||||| || |||||||||
Sbjct: 43498 tgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggac 43557
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||||| |||||||||||| |||||| |||||||||||||| || || || |||
Sbjct: 43558 gagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtc 43617
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || ||||| | |||| || |||||| | |||||||| |||||||| ||||||
Sbjct: 43618 ttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctac 43677
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattc 283
|| |||||||||||||| || || ||||| || |||||||||||||| || ||||||
Sbjct: 43678 tctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataattc 43734
>gb|CH401275.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000112
genomic scaffold, whole genome shotgun sequence
Length = 845600
Score = 226 bits (114), Expect = 1e-056
Identities = 201/230 (87%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||||| ||||| || || |||||||| |||||||||
Sbjct: 388804 gtgtgggatgcatatgaggccaccaagggggcccatggtgtctgcatcctcaccgagtgg 388863
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 388864 gacgagttcaagaccttggactaccagaagatctttgacaacatgcagaagcctgcattc 388923
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||| || || ||||| | |||| | |||||| | |||||||| || |||||||||
Sbjct: 388924 gtctttgatgggcgcaatgtggtcgatgccgagaagctcagggagattgggttcatcgtc 388983
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggt 273
|||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 388984 tactccatcggcaagccgcttgatgcctggctcaaggacatgcccgcggt 389033
Score = 192 bits (97), Expect = 2e-046
Identities = 202/237 (85%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
||||| ||||| |||||||||||||| ||||| || |||||||||| || |||||||||
Sbjct: 394683 tgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggac 394742
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||||| |||||||||||| |||||| |||||||||||||| || || || |||
Sbjct: 394743 gagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtc 394802
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || ||||| | |||| || |||||| | |||||||| |||||||| ||||||
Sbjct: 394803 ttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctac 394862
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattc 283
|| |||||||||||||| || || ||||| || |||||||||||||| || ||||||
Sbjct: 394863 tctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataattc 394919
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 226 bits (114), Expect = 1e-056
Identities = 201/230 (87%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||||| ||||| || || |||||||| |||||||||
Sbjct: 12421863 gtgtgggatgcatatgaggccaccaagggggcccatggtgtctgcatcctcaccgagtgg 12421922
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 12421923 gacgagttcaagaccttggactaccagaagatctttgacaacatgcagaagcctgcattc 12421982
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||| || || ||||| | |||| | |||||| | |||||||| || |||||||||
Sbjct: 12421983 gtctttgatgggcgcaatgtggtcgatgccgagaagctcagggagattgggttcatcgtc 12422042
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggt 273
|||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 12422043 tactccatcggcaagccgcttgatgcctggctcaaggacatgcccgcggt 12422092
Score = 192 bits (97), Expect = 2e-046
Identities = 202/237 (85%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
||||| ||||| |||||||||||||| ||||| || |||||||||| || |||||||||
Sbjct: 12427742 tgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggac 12427801
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||||| |||||||||||| |||||| |||||||||||||| || || || |||
Sbjct: 12427802 gagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtc 12427861
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || ||||| | |||| || |||||| | |||||||| |||||||| ||||||
Sbjct: 12427862 ttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctac 12427921
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattc 283
|| |||||||||||||| || || ||||| || |||||||||||||| || ||||||
Sbjct: 12427922 tctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataattc 12427978
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 226 bits (114), Expect = 1e-056
Identities = 201/230 (87%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||||| ||||| || || |||||||| |||||||||
Sbjct: 14934202 gtgtgggatgcatatgaggccaccaagggggcccatggtgtctgcatcctcaccgagtgg 14934261
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 14934262 gacgagttcaagaccttggactaccagaagatctttgacaacatgcagaagcctgcattc 14934321
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||| || || ||||| | |||| | |||||| | |||||||| || |||||||||
Sbjct: 14934322 gtctttgatgggcgcaatgtggtcgatgccgagaagctcagggagattgggttcatcgtc 14934381
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggt 273
|||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 14934382 tactccatcggcaagccgcttgatgcctggctcaaggacatgcccgcggt 14934431
Score = 192 bits (97), Expect = 2e-046
Identities = 202/237 (85%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
||||| ||||| |||||||||||||| ||||| || |||||||||| || |||||||||
Sbjct: 14940081 tgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggac 14940140
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||||| |||||||||||| |||||| |||||||||||||| || || || |||
Sbjct: 14940141 gagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtc 14940200
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || ||||| | |||| || |||||| | |||||||| |||||||| ||||||
Sbjct: 14940201 ttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctac 14940260
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattc 283
|| |||||||||||||| || || ||||| || |||||||||||||| || ||||||
Sbjct: 14940261 tctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataattc 14940317
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 226 bits (114), Expect = 1e-056
Identities = 201/230 (87%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||||| ||||| || || |||||||| |||||||||
Sbjct: 14888485 gtgtgggatgcatatgaggccaccaagggggcccatggtgtctgcatcctcaccgagtgg 14888544
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 14888545 gacgagttcaagaccttggactaccagaagatctttgacaacatgcagaagcctgcattc 14888604
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||| || || ||||| | |||| | |||||| | |||||||| || |||||||||
Sbjct: 14888605 gtctttgatgggcgcaatgtggtcgatgccgagaagctcagggagattgggttcatcgtc 14888664
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggt 273
|||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 14888665 tactccatcggcaagccgcttgatgcctggctcaaggacatgcccgcggt 14888714
Score = 192 bits (97), Expect = 2e-046
Identities = 202/237 (85%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
||||| ||||| |||||||||||||| ||||| || |||||||||| || |||||||||
Sbjct: 14894364 tgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggac 14894423
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||||| |||||||||||| |||||| |||||||||||||| || || || |||
Sbjct: 14894424 gagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtc 14894483
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || ||||| | |||| || |||||| | |||||||| |||||||| ||||||
Sbjct: 14894484 ttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctac 14894543
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattc 283
|| |||||||||||||| || || ||||| || |||||||||||||| || ||||||
Sbjct: 14894544 tctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataattc 14894600
>dbj|AK105768.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E05, full
insert sequence
Length = 1865
Score = 218 bits (110), Expect = 3e-054
Identities = 200/230 (86%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||||| ||||| || || |||||||| |||||||||
Sbjct: 1327 gtgtgggatgcatatgaggccaccaagggggcccatggtgtctgcatcctcaccgagtgg 1386
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 1387 gacgagttcaagaccttggactaccagaagatctttgacaacatgcagaagcctgcattc 1446
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||| || || ||||| | |||| | |||| | | |||||||| || |||||||||
Sbjct: 1447 gtctttgatgggcgcaatgtggtcgatgccgagaggctcagggagattgggttcatcgtc 1506
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggt 273
|||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 1507 tactccatcggcaagccgcttgatgcctggctcaaggacatgcccgcggt 1556
>gb|C91768.1|C91768 C91768 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31507_1A, mRNA sequence
Length = 449
Score = 216 bits (109), Expect = 1e-053
Identities = 199/225 (88%), Gaps = 4/225 (1%)
Strand = Plus / Minus
Query: 49 ggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctg-accgagtgggacg 107
|||||| |||||||||||||||| | |||| || | |||||||| |||||||||||||
Sbjct: 435 ggacgcntacgaggccaccaaggacccccatggcttctgcatccttcaccgagtgggacg 376
Query: 108 agttcaagaccctggactaccagaa-gat-cttcgacaacatgcagaagcccgccttcgt 165
||||||| || || ||||||||||| ||| || |||||||||||||||||| || ||
Sbjct: 375 agttcaanacgctcgactaccagaaagattctacgacaacatgcagaagccggcgtttn- 317
Query: 166 cttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtcta 225
|||| ||||||||||| || |||||||||||||| | |||||||||||||||||||||||
Sbjct: 316 cttcnacggccgcaacgtcgtcgacccggagaagctcagggagatcggcttcatcgtcta 257
Query: 226 ctccatcggcaagccgctcgacgcctggcttaaggacatgcccgc 270
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 256 ctccatcggcaagccgctcgacgcctggctcaaggacatgcccgc 212
>dbj|AK099096.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023C02, full
insert sequence
Length = 1824
Score = 192 bits (97), Expect = 2e-046
Identities = 202/237 (85%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
||||| ||||| |||||||||||||| ||||| || |||||||||| || |||||||||
Sbjct: 1445 tgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggac 1504
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||||| |||||||||||| |||||| |||||||||||||| || || || |||
Sbjct: 1505 gagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtc 1564
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || ||||| | |||| || |||||| | |||||||| |||||||| ||||||
Sbjct: 1565 ttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctac 1624
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattc 283
|| |||||||||||||| || || ||||| || |||||||||||||| || ||||||
Sbjct: 1625 tctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataattc 1681
>dbj|AK103919.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-A09, full
insert sequence
Length = 1774
Score = 192 bits (97), Expect = 2e-046
Identities = 202/237 (85%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
||||| ||||| |||||||||||||| ||||| || |||||||||| || |||||||||
Sbjct: 1316 tgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggac 1375
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||||| |||||||||||| |||||| |||||||||||||| || || || |||
Sbjct: 1376 gagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtc 1435
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || ||||| | |||| || |||||| | |||||||| |||||||| ||||||
Sbjct: 1436 ttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctac 1495
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattc 283
|| |||||||||||||| || || ||||| || |||||||||||||| || ||||||
Sbjct: 1496 tctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataattc 1552
>gb|CF589243.1|CF589243 EST00G12 Subtracted cDNA library of JA/BTH-treated rice leaf Oryza
sativa (japonica cultivar-group) cDNA clone JBI110, mRNA
sequence
Length = 733
Score = 176 bits (89), Expect = 9e-042
Identities = 158/180 (87%), Gaps = 1/180 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 552 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 611
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| |||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct: 612 gccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctc 671
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||||||||||||| |||| ||||||||||||| || |||||||||||||||||||||
Sbjct: 672 gactaccagaagatctacgacnacatgcagaagccggcgttcgtcttcgacggccgcaac 731
>gb|AU101434.1|AU101434 AU101434 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31507, mRNA sequence
Length = 320
Score = 170 bits (86), Expect = 6e-040
Identities = 101/106 (95%)
Strand = Plus / Plus
Query: 165 tcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtct 224
||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||
Sbjct: 4 tcttcgacggccgcaacgtcgtcgacccggagaagctcagggagatcggcttcatcgtct 63
Query: 225 actccatcggcaagccgctcgacgcctggcttaaggacatgcccgc 270
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 64 actccatcggcaagccgctcgacgcctggctcaaggacatgcccgc 109
>gb|AU066132.1|AU066132 AU066132 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5140_1A, mRNA sequence
Length = 350
Score = 153 bits (77), Expect = 1e-034
Identities = 143/164 (87%), Gaps = 1/164 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 187 ctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgag 246
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||| |||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct: 247 gccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctc 306
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgt 165
|||||||||||||||| |||||||||||||||||| || |||||
Sbjct: 307 gactaccagaagatctacgacaacatgcagaagccngcgttcgt 350
>gb|AC137999.2| Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete
sequence
Length = 97152
Score = 141 bits (71), Expect = 5e-031
Identities = 209/255 (81%)
Strand = Plus / Minus
Query: 13 gagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgaggccaccaaggg 72
||||||||||||||| || |||||| | || |||||||| |||||||| ||| ||
Sbjct: 66849 gagccccacggccatcaagcaggtgtccgtcgcctgggacgcctacgaggcggccagggc 66790
Query: 73 cgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctggactaccagaa 132
||||||||| || |||||||| || |||||||||||||||| || ||| |||||| ||
Sbjct: 66789 cgcccacggcgtctgcatcctcactgagtgggacgagttcaggagcctcgactacgcgag 66730
Query: 133 gatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaacatcatcgaccc 192
||||| || ||||||||||| || ||||| |||||||| |||||| | | ||| |
Sbjct: 66729 gatctacgggggaatgcagaagccggcgttcgtgttcgacgggcgcaacgtggttgacgc 66670
Query: 193 ggagaagttgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctg 252
|||||| |||||||||| || ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 66669 tgagaagctgagggagattggattcatcgtctactccattggcaagcctctcgatgcctg 66610
Query: 253 gcttaaggacatgcc 267
||| |||||||||||
Sbjct: 66609 gctcaaggacatgcc 66595
>ref|XM_468764.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1446
Score = 141 bits (71), Expect = 5e-031
Identities = 209/255 (81%)
Strand = Plus / Plus
Query: 13 gagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgaggccaccaaggg 72
||||||||||||||| || |||||| | || |||||||| |||||||| ||| ||
Sbjct: 1179 gagccccacggccatcaagcaggtgtccgtcgcctgggacgcctacgaggcggccagggc 1238
Query: 73 cgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctggactaccagaa 132
||||||||| || |||||||| || |||||||||||||||| || ||| |||||| ||
Sbjct: 1239 cgcccacggcgtctgcatcctcactgagtgggacgagttcaggagcctcgactacgcgag 1298
Query: 133 gatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaacatcatcgaccc 192
||||| || ||||||||||| || ||||| |||||||| |||||| | | ||| |
Sbjct: 1299 gatctacgggggaatgcagaagccggcgttcgtgttcgacgggcgcaacgtggttgacgc 1358
Query: 193 ggagaagttgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctg 252
|||||| |||||||||| || ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1359 tgagaagctgagggagattggattcatcgtctactccattggcaagcctctcgatgcctg 1418
Query: 253 gcttaaggacatgcc 267
||| |||||||||||
Sbjct: 1419 gctcaaggacatgcc 1433
>ref|NT_079921.2| Oryza sativa (japonica cultivar-group)
Length = 1595909
Score = 141 bits (71), Expect = 5e-031
Identities = 209/255 (81%)
Strand = Plus / Plus
Query: 13 gagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgaggccaccaaggg 72
||||||||||||||| || |||||| | || |||||||| |||||||| ||| ||
Sbjct: 1067937 gagccccacggccatcaagcaggtgtccgtcgcctgggacgcctacgaggcggccagggc 1067996
Query: 73 cgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctggactaccagaa 132
||||||||| || |||||||| || |||||||||||||||| || ||| |||||| ||
Sbjct: 1067997 cgcccacggcgtctgcatcctcactgagtgggacgagttcaggagcctcgactacgcgag 1068056
Query: 133 gatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaacatcatcgaccc 192
||||| || ||||||||||| || ||||| |||||||| |||||| | | ||| |
Sbjct: 1068057 gatctacgggggaatgcagaagccggcgttcgtgttcgacgggcgcaacgtggttgacgc 1068116
Query: 193 ggagaagttgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctg 252
|||||| |||||||||| || ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1068117 tgagaagctgagggagattggattcatcgtctactccattggcaagcctctcgatgcctg 1068176
Query: 253 gcttaaggacatgcc 267
||| |||||||||||
Sbjct: 1068177 gctcaaggacatgcc 1068191
>gb|AACV01006954.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006954, whole
genome shotgun sequence
Length = 2085
Score = 137 bits (69), Expect = 8e-030
Identities = 183/221 (82%)
Strand = Plus / Minus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| |||||||| ||| || ||||||||| || |||||||| || |||||||||
Sbjct: 1017 tgggacgcctacgaggcggccagggccgcccacggcgtctgcatcctcactgagtgggac 958
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
||||||| || ||| |||||| || ||||| || ||||||||||| || |||||
Sbjct: 957 gagttcaggagcctcgactacgcgaggatctacgggggaatgcagaagccggcgttcgtg 898
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
|||||||| |||||| | | ||| | |||||| |||||||||| || ||||||||||||
Sbjct: 897 ttcgacgggcgcaacgtggttgacgctgagaagctgagggagattggattcatcgtctac 838
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| |||||||| ||||| |||||||| |||||||||||
Sbjct: 837 tccattggcaagcctctcgatgcctggctcaaggacatgcc 797
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 137 bits (69), Expect = 8e-030
Identities = 183/221 (82%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| |||||||| ||| || ||||||||| || |||||||| || |||||||||
Sbjct: 4342581 tgggacgcctacgaggcggccagggccgcccacggcgtctgcatcctcactgagtgggac 4342640
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
||||||| || ||| |||||| || ||||| || ||||||||||| || |||||
Sbjct: 4342641 gagttcaggagcctcgactacgcgaggatctacgggggaatgcagaagccggcgttcgtg 4342700
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
|||||||| |||||| | | ||| | |||||| |||||||||| || ||||||||||||
Sbjct: 4342701 ttcgacgggcgcaacgtggttgacgctgagaagctgagggagattggattcatcgtctac 4342760
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| |||||||| ||||| |||||||| |||||||||||
Sbjct: 4342761 tccattggcaagcctctcgatgcctggctcaaggacatgcc 4342801
Score = 117 bits (59), Expect = 7e-024
Identities = 158/191 (82%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||||| |||||||||||||||||| || ||||||||| ||| | |||| |
Sbjct: 9037258 tgcatcctcaccgagtgggacgagttccgccggctcgactaccagcggatgtacgacgcc 9037199
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
||||| ||||| |||||| ||||||||||||||||| || |||||||||| ||| | |
Sbjct: 9037198 atgcacaagccggccttcctcttcgacggccgcaacgtcgtcgacccggacaagctccgc 9037139
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||||||| ||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 9037138 cgcatcggcttcgtcgtctactccatcggcaagccgctcgaccactggctcagggacatg 9037079
Query: 266 cccgcggtcgc 276
||||| |||||
Sbjct: 9037078 cccgccgtcgc 9037068
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
sequence
Length = 145590
Score = 117 bits (59), Expect = 7e-024
Identities = 158/191 (82%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||||| |||||||||||||||||| || ||||||||| ||| | |||| |
Sbjct: 44939 tgcatcctcaccgagtgggacgagttccgccggctcgactaccagcggatgtacgacgcc 44880
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
||||| ||||| |||||| ||||||||||||||||| || |||||||||| ||| | |
Sbjct: 44879 atgcacaagccggccttcctcttcgacggccgcaacgtcgtcgacccggacaagctccgc 44820
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||||||| ||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 44819 cgcatcggcttcgtcgtctactccatcggcaagccgctcgaccactggctcagggacatg 44760
Query: 266 cccgcggtcgc 276
||||| |||||
Sbjct: 44759 cccgccgtcgc 44749
>gb|AACV01007276.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007276, whole
genome shotgun sequence
Length = 14197
Score = 117 bits (59), Expect = 7e-024
Identities = 158/191 (82%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||||| |||||||||||||||||| || ||||||||| ||| | |||| |
Sbjct: 3823 tgcatcctcaccgagtgggacgagttccgccggctcgactaccagcggatgtacgacgcc 3764
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
||||| ||||| |||||| ||||||||||||||||| || |||||||||| ||| | |
Sbjct: 3763 atgcacaagccggccttcctcttcgacggccgcaacgtcgtcgacccggacaagctccgc 3704
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||||||| ||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 3703 cgcatcggcttcgtcgtctactccatcggcaagccgctcgaccactggctcagggacatg 3644
Query: 266 cccgcggtcgc 276
||||| |||||
Sbjct: 3643 cccgccgtcgc 3633
>ref|NT_107174.1| Oryza sativa (japonica cultivar-group)
Length = 4376475
Score = 117 bits (59), Expect = 7e-024
Identities = 158/191 (82%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||||| |||||||||||||||||| || ||||||||| ||| | |||| |
Sbjct: 3037796 tgcatcctcaccgagtgggacgagttccgccggctcgactaccagcggatgtacgacgcc 3037737
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
||||| ||||| |||||| ||||||||||||||||| || |||||||||| ||| | |
Sbjct: 3037736 atgcacaagccggccttcctcttcgacggccgcaacgtcgtcgacccggacaagctccgc 3037677
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||||||| ||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 3037676 cgcatcggcttcgtcgtctactccatcggcaagccgctcgaccactggctcagggacatg 3037617
Query: 266 cccgcggtcgc 276
||||| |||||
Sbjct: 3037616 cccgccgtcgc 3037606
>gb|AU162811.1|AU162811 AU162811 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10677, mRNA sequence
Length = 293
Score = 105 bits (53), Expect = 3e-020
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 211 cggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatgcccgc 270
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 1 cggcttcatcgtctactccatcggcaanccgctcgacgcctggctcaaggacatgcccgc 60
>gb|CF323071.1|CF323071 HDN--02-N13.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--02-N13, mRNA sequence
Length = 520
Score = 67.9 bits (34), Expect = 6e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
||||| ||||| |||||||||||||| ||||| || |||||||||| || |||||||||
Sbjct: 455 tgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggac 514
Query: 107 gagttc 112
||||||
Sbjct: 515 gagttc 520
>gb|D24971.1|D24971 RICR2871A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2871_1A, mRNA sequence
Length = 433
Score = 61.9 bits (31), Expect = 4e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 236 aagccgctcgacgcctggcttaaggacatgcccgc 270
|||||||||||||||||||| ||||||||||||||
Sbjct: 433 aagccgctcgacgcctggctcaaggacatgcccgc 399
>gb|AU033317.1|AU033317 AU033317 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6595_1A, mRNA sequence
Length = 267
Score = 50.1 bits (25), Expect = 0.001
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 12 cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgaggccaccaag 70
||||||||||||| | || ||||||| | ||||||||||||||| |||||||||||
Sbjct: 198 cgagccccacggcgttcaagcaggtgagcntggtgtgggacgcgtacnaggccaccaag 256
>gb|CV722232.1|CV722232 YBH--06-O24.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--06-O24, mRNA sequence
Length = 412
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 238 gccgctcgacgcctggcttaaggacatgcccgcggt 273
|||||| || |||||||| |||||||||||||||||
Sbjct: 358 gccgcttgatgcctggctcaaggacatgcccgcggt 323
>gb|AU174850.1|AU174850 AU174850 Rice cDNA from leaf Oryza sativa (japonica cultivar-group)
cDNA clone F10458, mRNA sequence
Length = 317
Score = 44.1 bits (22), Expect = 0.088
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 245 gacgcctggcttaaggacatgcccgc 270
||||||||||| ||||||||||||||
Sbjct: 1 gacgcctggctcaaggacatgcccgc 26
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 733,723
Number of Sequences: 438736
Number of extensions: 733723
Number of successful extensions: 15526
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14931
Number of HSP's gapped (non-prelim): 567
length of query: 616
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 595
effective length of database: 2,791,206,460
effective search space: 1660767843700
effective search space used: 1660767843700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)