BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405110.2.1
(945 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK073357.1| Oryza sativa (japonica cultivar-group) cDNA... 617 e-174
ref|XM_463675.1| Oryza sativa (japonica cultivar-group), p... 615 e-173
gb|AU164467.1|AU164467 AU164467 Rice cDNA from immature lea... 603 e-170
gb|CF335472.1|CF335472 JMT--05-C15.b1 AtJMT-overexpressing ... 498 e-138
gb|AU029250.1|AU029250 AU029250 Rice panicle shorter than 3... 486 e-134
gb|AU031604.1|AU031604 AU031604 Rice cDNA from immature lea... 480 e-133
gb|AU029251.1|AU029251 AU029251 Rice panicle shorter than 3... 454 e-125
gb|CF332651.1|CF332651 JMT--01-D22.g1 AtJMT-overexpressing ... 396 e-108
gb|CV724719.1|CV724719 14Salt--01-H08.b1 Salt treated rice ... 383 e-103
dbj|AP003262.3| Oryza sativa (japonica cultivar-group) geno... 192 2e-046
gb|AACV01002974.1| Oryza sativa (japonica cultivar-group) c... 192 2e-046
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 192 2e-046
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 192 2e-046
dbj|AP004332.3| Oryza sativa (japonica cultivar-group) geno... 192 2e-046
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 192 2e-046
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 192 2e-046
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 192 2e-046
gb|AZ128552.1|AZ128552 OSJNBb0099C06r CUGI Rice BAC Library... 119 3e-024
gb|CF318839.1|CF318839 HD--09-C01.b1 OsHDAC1-overexpressing... 103 2e-019
gb|AU183929.1|AU183929 AU183929 Rice cDNA from immature lea... 56 4e-005
dbj|AK064897.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
dbj|AP003920.3| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
dbj|AP004015.3| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
gb|AACV01018905.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 56 4e-005
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
gb|CF335107.1|CF335107 JMT--04-K13.b1 AtJMT-overexpressing ... 50 0.002
>dbj|AK073357.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027F19, full
insert sequence
Length = 862
Score = 617 bits (311), Expect = e-174
Identities = 518/587 (88%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 677 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 618
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| || || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 617 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcaccttttcttccatgc 558
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | | |||| ||||||||||| |||||||||||||| ||||| | |||||| |
Sbjct: 557 cggtggaggaattctttgcaaaggcctccgtccagtagcgagcagtagcagaaaatgtgg 498
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct: 497 aatagtcacgcaagtactgttgtgcaacgacagcatcctgaggatcatcaggtgcagggg 438
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
||||||||||||||| |||||||| || || |||||||| ||||||||||||||||| |
Sbjct: 437 cagaaagcagagcttggagggaaagcagtgccgtcttcaatgtaagggctgggctccatt 378
Query: 573 gatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccata 632
| || ||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 377 ggtccttcagtatgtccaagcagattgctccgttttggctgctaatgttagggtgccata 318
Query: 633 ctttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggcaggcggatat 692
|||||||||| ||||||||||| |||||||||||||| || ||||| || |||||||| |
Sbjct: 317 ctttggtgataaactgcatcttaggaggctcaaaggggtaaccacctgggaggcggatgt 258
Query: 693 cgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatggtgccggtga 752
|||||||||| ||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 257 cgatgacgaaggtgccgccctcgtagggcgtgccttggggcccggcgatggtgccggtga 198
Query: 753 ggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatacctcccggtcgc 812
||||||||||| ||| ||||||||||||||||||||| || || || ||||||| ||| |
Sbjct: 197 ggtgggagatggtggagccgtcgtggagcgcgatggacaccccggagacctccctgtccc 138
Query: 813 ggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
|||||||||| || |||||||||||||| | ||| ||||||||||||
Sbjct: 137 ggttgcactccgtcagctccttctgcaccctcgacacgtccaccatc 91
>ref|XM_463675.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 588
Score = 615 bits (310), Expect = e-173
Identities = 517/586 (88%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 586 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 527
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| || || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 526 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcaccttttcttccatgc 467
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | | |||| ||||||||||| |||||||||||||| ||||| | |||||| |
Sbjct: 466 cggtggaggaattctttgcaaaggcctccgtccagtagcgagcagtagcagaaaatgtgg 407
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct: 406 aatagtcacgcaagtactgttgtgcaacgacagcatcctgaggatcatcaggtgcagggg 347
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
||||||||||||||| |||||||| || || |||||||| ||||||||||||||||| |
Sbjct: 346 cagaaagcagagcttggagggaaagcagtgccgtcttcaatgtaagggctgggctccatt 287
Query: 573 gatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccata 632
| || ||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 286 ggtccttcagtatgtccaagcagattgctccgttttggctgctaatgttagggtgccata 227
Query: 633 ctttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggcaggcggatat 692
|||||||||| ||||||||||| |||||||||||||| || ||||| || |||||||| |
Sbjct: 226 ctttggtgataaactgcatcttaggaggctcaaaggggtaaccacctgggaggcggatgt 167
Query: 693 cgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatggtgccggtga 752
|||||||||| ||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 166 cgatgacgaaggtgccgccctcgtagggcgtgccttggggcccggcgatggtgccggtga 107
Query: 753 ggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatacctcccggtcgc 812
||||||||||| ||| ||||||||||||||||||||| || || || ||||||| ||| |
Sbjct: 106 ggtgggagatggtggagccgtcgtggagcgcgatggacaccccggagacctccctgtccc 47
Query: 813 ggttgcactcggtgagctccttctgcacgcgcgagacgtccaccat 858
|||||||||| || |||||||||||||| | ||| |||||||||||
Sbjct: 46 ggttgcactccgtcagctccttctgcaccctcgacacgtccaccat 1
>gb|AU164467.1|AU164467 AU164467 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61952, mRNA sequence
Length = 703
Score = 603 bits (304), Expect = e-170
Identities = 518/588 (88%), Gaps = 1/588 (0%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 667 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 608
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| || || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 607 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcaccttttcttccatgc 548
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | | |||| ||||||||||| |||||||||||||| ||||| | |||||| |
Sbjct: 547 cggtggaggaattctttgcaaaggcctccgtccagtagcgagcagtagcagaaaatgtgg 488
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct: 487 aatagtcacgcaagtactgttgtgcaacgacagcatcctgaggatcatcaggtgcagggg 428
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
||||||||||||||| |||||||| || || |||||||| ||||||||||||||||| |
Sbjct: 427 cagaaagcagagcttggagggaaagcagtgccgtcttcaatgtaagggctgggctccatt 368
Query: 573 gatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccata 632
| || ||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 367 ggtccttcagtatgtccaagcagattgctccgttttggctgctaatgttagggtgccata 308
Query: 633 ctttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggcaggcggatat 692
|||||||||| ||||||||||| |||||||||||||| || ||||| || |||||||| |
Sbjct: 307 ctttggtgataaactgcatcttaggaggctcaaaggggtaaccacctgggaggcggatgt 248
Query: 693 cgatgacgaacgtg-ccgccctcgtaggggctgtcggcgggcccggcgatggtgccggtg 751
|||||||||| ||| |||||||||||||| || | ||||||||||||||||||||||
Sbjct: 247 cgatgacgaaggtgcccgccctcgtagggcgtgccttggggcccggcgatggtgccggtg 188
Query: 752 aggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatacctcccggtcg 811
|||||||||||| ||| ||||||||||||||||||||| || || || ||||||| |||
Sbjct: 187 aggtgggagatggtggagccgtcgtggagcgcgatggacaccccggagacctccctgtcc 128
Query: 812 cggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
||||||||||| || |||||||||||||| | ||| ||||||||||||
Sbjct: 127 cggttgcactccgtcagctccttctgcaccctcgacacgtccaccatc 80
>gb|CF335472.1|CF335472 JMT--05-C15.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--05-C15, mRNA sequence
Length = 561
Score = 498 bits (251), Expect = e-138
Identities = 404/455 (88%)
Strand = Plus / Minus
Query: 405 tcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttggatagtcacgca 464
|||| ||||||||||| |||||||||||||| ||||| | |||||| | |||||||||||
Sbjct: 542 tctttgcaaaggcctccgtccagtagcgagcagtagcagaaaatgtggaatagtcacgca 483
Query: 465 ggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagag 524
||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 482 agtactgttgtgcaacgacagcatcctgaggatcatcaggtgcaggggcagaaagcagag 423
Query: 525 cttgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaa 584
|||| |||||||| || || |||||||| ||||||||||||||||| || || ||||| |
Sbjct: 422 cttggagggaaagcagtgccgtcttcaatgtaagggctgggctccattggtccttcagta 363
Query: 585 tgtccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatga 644
|||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct: 362 tgtccaagcagattgctccgttttggctgctaatgttagggtgccatactttggtgataa 303
Query: 645 actgcatcttcggaggctcaaagggatatccaccgggcaggcggatatcgatgacgaacg 704
|||||||||| |||||||||||||| || ||||| || |||||||| ||||||||||| |
Sbjct: 302 actgcatcttaggaggctcaaaggggtaaccacctgggaggcggatgtcgatgacgaagg 243
Query: 705 tgccgccctcgtaggggctgtcggcgggcccggcgatggtgccggtgaggtgggagatgt 764
|||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct: 242 tgccgccctcgtagggcgtgccttggggcccggcgatggtgccggtgaggtgggagatgg 183
Query: 765 tggcgccgtcgtggagcgcgatggagacgcccgatacctcccggtcgcggttgcactcgg 824
||| ||||||||||||||||||||| || || || ||||||| ||| ||||||||||| |
Sbjct: 182 tggagccgtcgtggagcgcgatggacaccccggagacctccctgtcccggttgcactccg 123
Query: 825 tgagctccttctgcacgcgcgagacgtccaccatc 859
| |||||||||||||| | ||| ||||||||||||
Sbjct: 122 tcagctccttctgcaccctcgacacgtccaccatc 88
>gb|AU029250.1|AU029250 AU029250 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30014_5A, mRNA sequence
Length = 480
Score = 486 bits (245), Expect = e-134
Identities = 397/448 (88%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 454 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 395
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| || || |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 394 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcaccttttcttccatnc 335
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | | |||| ||||||||||| |||||||||||||| ||||| | |||||| |
Sbjct: 334 cggtggaggaattctttgcaaaggcctccgtccagtagcgagcagtagcagaaaatgtgg 275
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct: 274 aatagtcacgcaagtactgttgtgcaacgacagcatcctgaggatcatcaggtgcagggg 215
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
||||||||||||||| |||||||| || || |||||||| ||||||||||||||||| |
Sbjct: 214 cagaaagcagagcttggagggaaagcagtgccgtcttcaatgtaagggctgggctccatt 155
Query: 573 gatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccata 632
| || ||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 154 ggtccttcagtatgtccaagcagattgctccgttttggctgctaatgttagggtgccata 95
Query: 633 ctttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggcaggcggatat 692
|||||||||| ||||||||||| |||||||||||||| || ||||| || |||||||| |
Sbjct: 94 ctttggtgataaactgcatcttaggaggctcaaaggggtaaccacctgggaggcggatgt 35
Query: 693 cgatgacgaacgtgccgccctcgtaggg 720
|||||||||| |||||||||||||||||
Sbjct: 34 cgatgacgaaggtgccgccctcgtaggg 7
>gb|AU031604.1|AU031604 AU031604 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61952_2Z, mRNA sequence
Length = 710
Score = 480 bits (242), Expect = e-133
Identities = 427/488 (87%), Gaps = 1/488 (0%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 490 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 431
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| || || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 430 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcaccttttcttccatgc 371
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | | |||| ||||||||||| |||||||||||||| ||||| | |||||| |
Sbjct: 370 cggtggaggaattctttgcaaaggcctccgtccagtagcgagcagtagcagaaaatgtgg 311
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct: 310 aatagtcacgcaagtactgttgtgcaacgacagcatcctgaggatcatcaggtgcagggg 251
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
||||||||||||||| |||||||| || || |||||||| ||||||||||||||||| |
Sbjct: 250 cagaaagcagagcttggagggaaagcagtgccgtcttcaatgtaagggctgggctccatt 191
Query: 573 gatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccata 632
| || ||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 190 ggtccttcagtatgtccaagcagattgctccgttttggctgctaatgttagggtgccata 131
Query: 633 ctttggtgatgaactgcatcttcggaggctcaaagggatatccacc-gggcaggcggata 691
|||||||||| ||||||||||| |||| ||||||| || ||||| ||| ||||||||
Sbjct: 130 ctttggtgataaactgcatcttaggagctccaaaggggtaaccacctggggaggcggatg 71
Query: 692 tcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatggtgccggtg 751
||||||||||| ||||||||||||||||| || | ||||||||||||||| ||||||
Sbjct: 70 tcgatgacgaaggtgccgccctcgtagggngtgccttggggcccggcgatggtnccggtg 11
Query: 752 aggtggga 759
| ||||||
Sbjct: 10 aagtggga 3
>gb|AU029251.1|AU029251 AU029251 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30014_6Z, mRNA sequence
Length = 563
Score = 454 bits (229), Expect = e-125
Identities = 393/448 (87%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 462 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 403
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| || || ||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 402 ttctcaccatgtcttcagggaagcccatctcaaccancttctgcaccttttcttccatgc 343
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | | |||| ||||||||||| |||||||||||||| ||||| | |||||| |
Sbjct: 342 cggtggaggaattctttgcaaaggcctccgtccagtagcgagcagtagcagaaaatgtgg 283
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct: 282 aatagtcacgcaagtactgttgtgcaacgacagcatcctgaggatcatcaggtgcagggg 223
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
||||||||||||||| |||||||| || || |||||||| |||||||||||| |||| |
Sbjct: 222 nagaaagcagagcttggagggaaagcagtgccgtcttcaatgtaagggctgggntccatt 163
Query: 573 gatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccata 632
| || ||||| ||||||||||| |||||||| ||||||||||| |||||||||||||| |
Sbjct: 162 ggtccttcagtatgtccaagcagattgctccgttttggctgctaatgttagggtgccana 103
Query: 633 ctttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggcaggcggatat 692
|||||| ||| ||||| ||||| |||||||||||||| || ||||| || |||||||| |
Sbjct: 102 ctttggggataaactgnatcttaggaggctcaaaggggtaaccacctgggaggcggatgt 43
Query: 693 cgatgacgaacgtgccgccctcgtaggg 720
|||||||||| |||||||||||||||||
Sbjct: 42 cgatgacgaa-gtgccgccctcgtaggg 16
>gb|CF332651.1|CF332651 JMT--01-D22.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--01-D22, mRNA sequence
Length = 481
Score = 396 bits (200), Expect = e-108
Identities = 323/364 (88%)
Strand = Plus / Minus
Query: 496 atcatcaggtgcaggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggt 555
||||||||||||||| | ||||||||||||||| |||||||| || || |||||||| ||
Sbjct: 481 atcatcaggtgcaggggcagaaagcagagcttggagggaaagcagtgccgtcttcaatgt 422
Query: 556 aagggctgggctccactgatctttcagaatgtccaagcaaattgctccattttggctgct 615
||||||||||||||| || || ||||| ||||||||||| |||||||| |||||||||||
Sbjct: 421 aagggctgggctccattggtccttcagtatgtccaagcagattgctccgttttggctgct 362
Query: 616 gatgttagggtgccatactttggtgatgaactgcatcttcggaggctcaaagggatatcc 675
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||
Sbjct: 361 aatgttagggtgccatactttggtgataaactgcatcttaggaggctcaaaggggtaacc 302
Query: 676 accgggcaggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggccc 735
||| || |||||||| ||||||||||| ||||||||||||||||| || | ||||||
Sbjct: 301 acctgggaggcggatgtcgatgacgaaggtgccgccctcgtagggcgtgccttggggccc 242
Query: 736 ggcgatggtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgcc 795
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||| || ||
Sbjct: 241 ggcgatggtgccggtgaggtgggagatggtggagccgtcgtggagcgcgatggacacccc 182
Query: 796 cgatacctcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccac 855
|| ||||||| ||| ||||||||||| || |||||||||||||| | ||| ||||||||
Sbjct: 181 ggagacctccctgtcccggttgcactccgtcagctccttctgcaccctcgacacgtccac 122
Query: 856 catc 859
||||
Sbjct: 121 catc 118
>gb|CV724719.1|CV724719 14Salt--01-H08.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--01-H08, mRNA sequence
Length = 545
Score = 383 bits (193), Expect = e-103
Identities = 316/357 (88%)
Strand = Plus / Minus
Query: 503 ggtgcaggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggct 562
|||||||| | ||||||||||||||| |||||||| || || |||||||| |||||||||
Sbjct: 545 ggtgcaggggcagaaagcagagcttggagggaaagcagtgccgtcttcaatgtaagggct 486
Query: 563 gggctccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgtta 622
|||||||| || || ||||| ||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 485 gggctccattggtccttcagtatgtccaagcagattgctccgttttggctgctaatgtta 426
Query: 623 gggtgccatactttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggc 682
|||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| ||
Sbjct: 425 gggtgccatactttggtgataaactgcatcttaggaggctcaaaggggtaaccacctggg 366
Query: 683 aggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatg 742
|||||||| ||||||||||| ||||||||||||||||| || | |||||||||||||
Sbjct: 365 aggcggatgtcgatgacgaaggtgccgccctcgtagggcgtgccttggggcccggcgatg 306
Query: 743 gtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatacc 802
||||||||||||||||||||| ||| ||||||||||||||||||||| || || || |||
Sbjct: 305 gtgccggtgaggtgggagatggtggagccgtcgtggagcgcgatggacaccccggagacc 246
Query: 803 tcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
|||| ||| ||||||||||| || |||||||||||||| | ||| ||||||||||||
Sbjct: 245 tccctgtcccggttgcactccgtcagctccttctgcaccctcgacacgtccaccatc 189
>dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0482D04
Length = 144583
Score = 192 bits (97), Expect = 2e-046
Identities = 145/161 (90%)
Strand = Plus / Plus
Query: 469 ctgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttg 528
|||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 69981 ctgttgtgcaacgacagcatcctgaggatcatcaggtgcaggggcagaaagcagagcttg 70040
Query: 529 aagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtc 588
|||||||| || || |||||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 70041 gagggaaagcagtgccgtcttcaatgtaagggctgggctccattggtccttcagtatgtc 70100
Query: 589 caagcaaattgctccattttggctgctgatgttagggtgcc 629
|||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 70101 caagcagattgctccgttttggctgctaatgttagggtgcc 70141
Score = 184 bits (93), Expect = 6e-044
Identities = 156/177 (88%)
Strand = Plus / Plus
Query: 683 aggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatg 742
|||||||| ||||||||||| ||||||||||||||||| || | |||||||||||||
Sbjct: 71178 aggcggatgtcgatgacgaaggtgccgccctcgtagggcgtgccttggggcccggcgatg 71237
Query: 743 gtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatacc 802
||||||||||||||||||||| ||| ||||||||||||||||||||| || || || |||
Sbjct: 71238 gtgccggtgaggtgggagatggtggagccgtcgtggagcgcgatggacaccccggagacc 71297
Query: 803 tcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
|||| ||| ||||||||||| || |||||||||||||| | ||| ||||||||||||
Sbjct: 71298 tccctgtcccggttgcactccgtcagctccttctgcaccctcgacacgtccaccatc 71354
Score = 119 bits (60), Expect = 3e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 68628 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 68687
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcacct 380
|||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 68688 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcacct 68735
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 377 accttctcttccatgcccgttgatgcactcttcgcaaaggcctctgtccagtagcgagcc 436
||||| ||||||||||| || || | | |||| ||||||||||| ||||||||||||||
Sbjct: 68825 accttttcttccatgccggtggaggaattctttgcaaaggcctccgtccagtagcgagca 68884
Query: 437 gtagcggcaaatgttggatagtcacgcaggtactg 471
||||| | |||||| | ||||||||||| ||||||
Sbjct: 68885 gtagcagaaaatgtggaatagtcacgcaagtactg 68919
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 628 ccatactttggtgatgaactgcatcttcggaggctcaaagggatatccacc 678
||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 70561 ccatactttggtgataaactgcatcttaggaggctcaaaggggtaaccacc 70611
>gb|AACV01002974.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002974, whole
genome shotgun sequence
Length = 29145
Score = 192 bits (97), Expect = 2e-046
Identities = 145/161 (90%)
Strand = Plus / Minus
Query: 469 ctgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttg 528
|||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 8543 ctgttgtgcaacgacagcatcctgaggatcatcaggtgcaggggcagaaagcagagcttg 8484
Query: 529 aagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtc 588
|||||||| || || |||||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 8483 gagggaaagcagtgccgtcttcaatgtaagggctgggctccattggtccttcagtatgtc 8424
Query: 589 caagcaaattgctccattttggctgctgatgttagggtgcc 629
|||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 8423 caagcagattgctccgttttggctgctaatgttagggtgcc 8383
Score = 184 bits (93), Expect = 6e-044
Identities = 156/177 (88%)
Strand = Plus / Minus
Query: 683 aggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatg 742
|||||||| ||||||||||| ||||||||||||||||| || | |||||||||||||
Sbjct: 7346 aggcggatgtcgatgacgaaggtgccgccctcgtagggcgtgccttggggcccggcgatg 7287
Query: 743 gtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatacc 802
||||||||||||||||||||| ||| ||||||||||||||||||||| || || || |||
Sbjct: 7286 gtgccggtgaggtgggagatggtggagccgtcgtggagcgcgatggacaccccggagacc 7227
Query: 803 tcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
|||| ||| ||||||||||| || |||||||||||||| | ||| ||||||||||||
Sbjct: 7226 tccctgtcccggttgcactccgtcagctccttctgcaccctcgacacgtccaccatc 7170
Score = 119 bits (60), Expect = 3e-024
Identities = 96/108 (88%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 9896 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 9837
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcacct 380
|||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 9836 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcacct 9789
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 377 accttctcttccatgcccgttgatgcactcttcgcaaaggcctctgtccagtagcgagcc 436
||||| ||||||||||| || || | | |||| ||||||||||| ||||||||||||||
Sbjct: 9699 accttttcttccatgccggtggaggaattctttgcaaaggcctccgtccagtagcgagca 9640
Query: 437 gtagcggcaaatgttggatagtcacgcaggtactg 471
||||| | |||||| | ||||||||||| ||||||
Sbjct: 9639 gtagcagaaaatgtggaatagtcacgcaagtactg 9605
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 628 ccatactttggtgatgaactgcatcttcggaggctcaaagggatatccacc 678
||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 7963 ccatactttggtgataaactgcatcttaggaggctcaaaggggtaaccacc 7913
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 192 bits (97), Expect = 2e-046
Identities = 145/161 (90%)
Strand = Plus / Plus
Query: 469 ctgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttg 528
|||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 40670636 ctgttgtgcaacgacagcatcctgaggatcatcaggtgcaggggcagaaagcagagcttg 40670695
Query: 529 aagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtc 588
|||||||| || || |||||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 40670696 gagggaaagcagtgccgtcttcaatgtaagggctgggctccattggtccttcagtatgtc 40670755
Query: 589 caagcaaattgctccattttggctgctgatgttagggtgcc 629
|||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 40670756 caagcagattgctccgttttggctgctaatgttagggtgcc 40670796
Score = 184 bits (93), Expect = 6e-044
Identities = 156/177 (88%)
Strand = Plus / Plus
Query: 683 aggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatg 742
|||||||| ||||||||||| ||||||||||||||||| || | |||||||||||||
Sbjct: 40671833 aggcggatgtcgatgacgaaggtgccgccctcgtagggcgtgccttggggcccggcgatg 40671892
Query: 743 gtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatacc 802
||||||||||||||||||||| ||| ||||||||||||||||||||| || || || |||
Sbjct: 40671893 gtgccggtgaggtgggagatggtggagccgtcgtggagcgcgatggacaccccggagacc 40671952
Query: 803 tcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
|||| ||| ||||||||||| || |||||||||||||| | ||| ||||||||||||
Sbjct: 40671953 tccctgtcccggttgcactccgtcagctccttctgcaccctcgacacgtccaccatc 40672009
Score = 119 bits (60), Expect = 3e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 40669283 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 40669342
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcacct 380
|||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 40669343 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcacct 40669390
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 377 accttctcttccatgcccgttgatgcactcttcgcaaaggcctctgtccagtagcgagcc 436
||||| ||||||||||| || || | | |||| ||||||||||| ||||||||||||||
Sbjct: 40669480 accttttcttccatgccggtggaggaattctttgcaaaggcctccgtccagtagcgagca 40669539
Query: 437 gtagcggcaaatgttggatagtcacgcaggtactg 471
||||| | |||||| | ||||||||||| ||||||
Sbjct: 40669540 gtagcagaaaatgtggaatagtcacgcaagtactg 40669574
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 628 ccatactttggtgatgaactgcatcttcggaggctcaaagggatatccacc 678
||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 40671216 ccatactttggtgataaactgcatcttaggaggctcaaaggggtaaccacc 40671266
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 192 bits (97), Expect = 2e-046
Identities = 145/161 (90%)
Strand = Plus / Plus
Query: 469 ctgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttg 528
|||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 298930 ctgttgtgcaacgacagcatcctgaggatcatcaggtgcaggggcagaaagcagagcttg 298989
Query: 529 aagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtc 588
|||||||| || || |||||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 298990 gagggaaagcagtgccgtcttcaatgtaagggctgggctccattggtccttcagtatgtc 299049
Query: 589 caagcaaattgctccattttggctgctgatgttagggtgcc 629
|||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 299050 caagcagattgctccgttttggctgctaatgttagggtgcc 299090
Score = 184 bits (93), Expect = 6e-044
Identities = 156/177 (88%)
Strand = Plus / Plus
Query: 683 aggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatg 742
|||||||| ||||||||||| ||||||||||||||||| || | |||||||||||||
Sbjct: 300127 aggcggatgtcgatgacgaaggtgccgccctcgtagggcgtgccttggggcccggcgatg 300186
Query: 743 gtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatacc 802
||||||||||||||||||||| ||| ||||||||||||||||||||| || || || |||
Sbjct: 300187 gtgccggtgaggtgggagatggtggagccgtcgtggagcgcgatggacaccccggagacc 300246
Query: 803 tcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
|||| ||| ||||||||||| || |||||||||||||| | ||| ||||||||||||
Sbjct: 300247 tccctgtcccggttgcactccgtcagctccttctgcaccctcgacacgtccaccatc 300303
Score = 119 bits (60), Expect = 3e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 297577 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 297636
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcacct 380
|||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 297637 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcacct 297684
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 377 accttctcttccatgcccgttgatgcactcttcgcaaaggcctctgtccagtagcgagcc 436
||||| ||||||||||| || || | | |||| ||||||||||| ||||||||||||||
Sbjct: 297774 accttttcttccatgccggtggaggaattctttgcaaaggcctccgtccagtagcgagca 297833
Query: 437 gtagcggcaaatgttggatagtcacgcaggtactg 471
||||| | |||||| | ||||||||||| ||||||
Sbjct: 297834 gtagcagaaaatgtggaatagtcacgcaagtactg 297868
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 628 ccatactttggtgatgaactgcatcttcggaggctcaaagggatatccacc 678
||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 299510 ccatactttggtgataaactgcatcttaggaggctcaaaggggtaaccacc 299560
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0093F16
Length = 160925
Score = 192 bits (97), Expect = 2e-046
Identities = 145/161 (90%)
Strand = Plus / Plus
Query: 469 ctgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttg 528
|||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 31944 ctgttgtgcaacgacagcatcctgaggatcatcaggtgcaggggcagaaagcagagcttg 32003
Query: 529 aagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtc 588
|||||||| || || |||||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 32004 gagggaaagcagtgccgtcttcaatgtaagggctgggctccattggtccttcagtatgtc 32063
Query: 589 caagcaaattgctccattttggctgctgatgttagggtgcc 629
|||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 32064 caagcagattgctccgttttggctgctaatgttagggtgcc 32104
Score = 184 bits (93), Expect = 6e-044
Identities = 156/177 (88%)
Strand = Plus / Plus
Query: 683 aggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatg 742
|||||||| ||||||||||| ||||||||||||||||| || | |||||||||||||
Sbjct: 33141 aggcggatgtcgatgacgaaggtgccgccctcgtagggcgtgccttggggcccggcgatg 33200
Query: 743 gtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatacc 802
||||||||||||||||||||| ||| ||||||||||||||||||||| || || || |||
Sbjct: 33201 gtgccggtgaggtgggagatggtggagccgtcgtggagcgcgatggacaccccggagacc 33260
Query: 803 tcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
|||| ||| ||||||||||| || |||||||||||||| | ||| ||||||||||||
Sbjct: 33261 tccctgtcccggttgcactccgtcagctccttctgcaccctcgacacgtccaccatc 33317
Score = 119 bits (60), Expect = 3e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 30591 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 30650
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcacct 380
|||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 30651 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcacct 30698
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 377 accttctcttccatgcccgttgatgcactcttcgcaaaggcctctgtccagtagcgagcc 436
||||| ||||||||||| || || | | |||| ||||||||||| ||||||||||||||
Sbjct: 30788 accttttcttccatgccggtggaggaattctttgcaaaggcctccgtccagtagcgagca 30847
Query: 437 gtagcggcaaatgttggatagtcacgcaggtactg 471
||||| | |||||| | ||||||||||| ||||||
Sbjct: 30848 gtagcagaaaatgtggaatagtcacgcaagtactg 30882
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 628 ccatactttggtgatgaactgcatcttcggaggctcaaagggatatccacc 678
||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 32524 ccatactttggtgataaactgcatcttaggaggctcaaaggggtaaccacc 32574
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 192 bits (97), Expect = 2e-046
Identities = 145/161 (90%)
Strand = Plus / Plus
Query: 469 ctgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttg 528
|||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 14868115 ctgttgtgcaacgacagcatcctgaggatcatcaggtgcaggggcagaaagcagagcttg 14868174
Query: 529 aagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtc 588
|||||||| || || |||||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 14868175 gagggaaagcagtgccgtcttcaatgtaagggctgggctccattggtccttcagtatgtc 14868234
Query: 589 caagcaaattgctccattttggctgctgatgttagggtgcc 629
|||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 14868235 caagcagattgctccgttttggctgctaatgttagggtgcc 14868275
Score = 184 bits (93), Expect = 6e-044
Identities = 156/177 (88%)
Strand = Plus / Plus
Query: 683 aggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatg 742
|||||||| ||||||||||| ||||||||||||||||| || | |||||||||||||
Sbjct: 14869312 aggcggatgtcgatgacgaaggtgccgccctcgtagggcgtgccttggggcccggcgatg 14869371
Query: 743 gtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatacc 802
||||||||||||||||||||| ||| ||||||||||||||||||||| || || || |||
Sbjct: 14869372 gtgccggtgaggtgggagatggtggagccgtcgtggagcgcgatggacaccccggagacc 14869431
Query: 803 tcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
|||| ||| ||||||||||| || |||||||||||||| | ||| ||||||||||||
Sbjct: 14869432 tccctgtcccggttgcactccgtcagctccttctgcaccctcgacacgtccaccatc 14869488
Score = 119 bits (60), Expect = 3e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 14866762 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 14866821
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcacct 380
|||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 14866822 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcacct 14866869
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 377 accttctcttccatgcccgttgatgcactcttcgcaaaggcctctgtccagtagcgagcc 436
||||| ||||||||||| || || | | |||| ||||||||||| ||||||||||||||
Sbjct: 14866959 accttttcttccatgccggtggaggaattctttgcaaaggcctccgtccagtagcgagca 14867018
Query: 437 gtagcggcaaatgttggatagtcacgcaggtactg 471
||||| | |||||| | ||||||||||| ||||||
Sbjct: 14867019 gtagcagaaaatgtggaatagtcacgcaagtactg 14867053
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 628 ccatactttggtgatgaactgcatcttcggaggctcaaagggatatccacc 678
||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 14868695 ccatactttggtgataaactgcatcttaggaggctcaaaggggtaaccacc 14868745
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 192 bits (97), Expect = 2e-046
Identities = 145/161 (90%)
Strand = Plus / Plus
Query: 469 ctgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttg 528
|||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 40069836 ctgttgtgcaacgacagcatcctgaggatcatcaggtgcaggggcagaaagcagagcttg 40069895
Query: 529 aagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtc 588
|||||||| || || |||||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 40069896 gagggaaagcagtgccgtcttcaatgtaagggctgggctccattggtccttcagtatgtc 40069955
Query: 589 caagcaaattgctccattttggctgctgatgttagggtgcc 629
|||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 40069956 caagcagattgctccgttttggctgctaatgttagggtgcc 40069996
Score = 184 bits (93), Expect = 6e-044
Identities = 156/177 (88%)
Strand = Plus / Plus
Query: 683 aggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatg 742
|||||||| ||||||||||| ||||||||||||||||| || | |||||||||||||
Sbjct: 40071033 aggcggatgtcgatgacgaaggtgccgccctcgtagggcgtgccttggggcccggcgatg 40071092
Query: 743 gtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatacc 802
||||||||||||||||||||| ||| ||||||||||||||||||||| || || || |||
Sbjct: 40071093 gtgccggtgaggtgggagatggtggagccgtcgtggagcgcgatggacaccccggagacc 40071152
Query: 803 tcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
|||| ||| ||||||||||| || |||||||||||||| | ||| ||||||||||||
Sbjct: 40071153 tccctgtcccggttgcactccgtcagctccttctgcaccctcgacacgtccaccatc 40071209
Score = 119 bits (60), Expect = 3e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 40068483 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 40068542
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcacct 380
|||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 40068543 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcacct 40068590
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 377 accttctcttccatgcccgttgatgcactcttcgcaaaggcctctgtccagtagcgagcc 436
||||| ||||||||||| || || | | |||| ||||||||||| ||||||||||||||
Sbjct: 40068680 accttttcttccatgccggtggaggaattctttgcaaaggcctccgtccagtagcgagca 40068739
Query: 437 gtagcggcaaatgttggatagtcacgcaggtactg 471
||||| | |||||| | ||||||||||| ||||||
Sbjct: 40068740 gtagcagaaaatgtggaatagtcacgcaagtactg 40068774
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 628 ccatactttggtgatgaactgcatcttcggaggctcaaagggatatccacc 678
||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 40070416 ccatactttggtgataaactgcatcttaggaggctcaaaggggtaaccacc 40070466
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 192 bits (97), Expect = 2e-046
Identities = 145/161 (90%)
Strand = Plus / Plus
Query: 469 ctgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttg 528
|||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 40589966 ctgttgtgcaacgacagcatcctgaggatcatcaggtgcaggggcagaaagcagagcttg 40590025
Query: 529 aagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtc 588
|||||||| || || |||||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 40590026 gagggaaagcagtgccgtcttcaatgtaagggctgggctccattggtccttcagtatgtc 40590085
Query: 589 caagcaaattgctccattttggctgctgatgttagggtgcc 629
|||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 40590086 caagcagattgctccgttttggctgctaatgttagggtgcc 40590126
Score = 184 bits (93), Expect = 6e-044
Identities = 156/177 (88%)
Strand = Plus / Plus
Query: 683 aggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatg 742
|||||||| ||||||||||| ||||||||||||||||| || | |||||||||||||
Sbjct: 40591163 aggcggatgtcgatgacgaaggtgccgccctcgtagggcgtgccttggggcccggcgatg 40591222
Query: 743 gtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatacc 802
||||||||||||||||||||| ||| ||||||||||||||||||||| || || || |||
Sbjct: 40591223 gtgccggtgaggtgggagatggtggagccgtcgtggagcgcgatggacaccccggagacc 40591282
Query: 803 tcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
|||| ||| ||||||||||| || |||||||||||||| | ||| ||||||||||||
Sbjct: 40591283 tccctgtcccggttgcactccgtcagctccttctgcaccctcgacacgtccaccatc 40591339
Score = 119 bits (60), Expect = 3e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 40588613 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 40588672
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcacct 380
|||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 40588673 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcacct 40588720
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 377 accttctcttccatgcccgttgatgcactcttcgcaaaggcctctgtccagtagcgagcc 436
||||| ||||||||||| || || | | |||| ||||||||||| ||||||||||||||
Sbjct: 40588810 accttttcttccatgccggtggaggaattctttgcaaaggcctccgtccagtagcgagca 40588869
Query: 437 gtagcggcaaatgttggatagtcacgcaggtactg 471
||||| | |||||| | ||||||||||| ||||||
Sbjct: 40588870 gtagcagaaaatgtggaatagtcacgcaagtactg 40588904
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 628 ccatactttggtgatgaactgcatcttcggaggctcaaagggatatccacc 678
||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 40590546 ccatactttggtgataaactgcatcttaggaggctcaaaggggtaaccacc 40590596
>gb|AZ128552.1|AZ128552 OSJNBb0099C06r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0099C06r, DNA
sequence
Length = 506
Score = 119 bits (60), Expect = 3e-024
Identities = 96/108 (88%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| || |||||||||||||||||||||| || |||||||| |||
Sbjct: 214 agccagagcagagcttctcaagagccatgttctcgtcgccattgacactcttcagaacac 155
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcacct 380
|||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 154 ttctcaccatgtcttcagggaagcccatctcaaccagcttctgcacct 107
>gb|CF318839.1|CF318839 HD--09-C01.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--09-C01, mRNA sequence
Length = 301
Score = 103 bits (52), Expect = 2e-019
Identities = 58/60 (96%)
Strand = Plus / Minus
Query: 730 gggcccggcgatggtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatgga 789
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 270 gggcccggcgatggtgccggtgaggtgggagatggtggagccgtcgtggagcgcgatgga 211
>gb|AU183929.1|AU183929 AU183929 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61468, mRNA sequence
Length = 366
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 276 cagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcacttc 335
|||||||||||||||| ||| ||||||||||||||| || || ||||||| ||||| |
Sbjct: 240 cagagcagagcttttcaagaatcatgttctcgtcgccgtcgacaatcttcagagcactcc 181
Query: 336 tcac 339
||||
Sbjct: 180 tcac 177
>dbj|AK064897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L10, full
insert sequence
Length = 2314
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 276 cagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcacttc 335
|||||||||||||||| ||| ||||||||||||||| || || ||||||| ||||| |
Sbjct: 2108 cagagcagagcttttcaagaatcatgttctcgtcgccgtcgacaatcttcagagcactcc 2049
Query: 336 tcac 339
||||
Sbjct: 2048 tcac 2045
>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1789_C07
Length = 138944
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 276 cagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcacttc 335
|||||||||||||||| ||| ||||||||||||||| || || ||||||| ||||| |
Sbjct: 73237 cagagcagagcttttcaagaatcatgttctcgtcgccgtcgacaatcttcagagcactcc 73296
Query: 336 tcac 339
||||
Sbjct: 73297 tcac 73300
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1770_H02
Length = 170648
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 276 cagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcacttc 335
|||||||||||||||| ||| ||||||||||||||| || || ||||||| ||||| |
Sbjct: 153266 cagagcagagcttttcaagaatcatgttctcgtcgccgtcgacaatcttcagagcactcc 153325
Query: 336 tcac 339
||||
Sbjct: 153326 tcac 153329
>gb|AACV01018905.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018905, whole
genome shotgun sequence
Length = 66192
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 276 cagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcacttc 335
|||||||||||||||| ||| ||||||||||||||| || || ||||||| ||||| |
Sbjct: 14850 cagagcagagcttttcaagaatcatgttctcgtcgccgtcgacaatcttcagagcactcc 14909
Query: 336 tcac 339
||||
Sbjct: 14910 tcac 14913
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 276 cagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcacttc 335
|||||||||||||||| ||| ||||||||||||||| || || ||||||| ||||| |
Sbjct: 26185598 cagagcagagcttttcaagaatcatgttctcgtcgccgtcgacaatcttcagagcactcc 26185657
Query: 336 tcac 339
||||
Sbjct: 26185658 tcac 26185661
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 276 cagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcacttc 335
|||||||||||||||| ||| ||||||||||||||| || || ||||||| ||||| |
Sbjct: 17652737 cagagcagagcttttcaagaatcatgttctcgtcgccgtcgacaatcttcagagcactcc 17652796
Query: 336 tcac 339
||||
Sbjct: 17652797 tcac 17652800
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 276 cagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcacttc 335
|||||||||||||||| ||| ||||||||||||||| || || ||||||| ||||| |
Sbjct: 25254743 cagagcagagcttttcaagaatcatgttctcgtcgccgtcgacaatcttcagagcactcc 25254802
Query: 336 tcac 339
||||
Sbjct: 25254803 tcac 25254806
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 276 cagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcacttc 335
|||||||||||||||| ||| ||||||||||||||| || || ||||||| ||||| |
Sbjct: 26423685 cagagcagagcttttcaagaatcatgttctcgtcgccgtcgacaatcttcagagcactcc 26423744
Query: 336 tcac 339
||||
Sbjct: 26423745 tcac 26423748
>gb|CF335107.1|CF335107 JMT--04-K13.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--04-K13, mRNA sequence
Length = 303
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 276 cagagcagagcttttcgagagccatgttctcgtcgcc 312
|||||||||||||||| ||| |||||||||||||||
Sbjct: 54 cagagcagagcttttcaagaatcatgttctcgtcgcc 18
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,387,237
Number of Sequences: 438736
Number of extensions: 1387237
Number of successful extensions: 9969
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9714
Number of HSP's gapped (non-prelim): 238
length of query: 945
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 924
effective length of database: 2,791,206,460
effective search space: 2579074769040
effective search space used: 2579074769040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)