BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405010.2.1
(1644 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070623.1| Oryza sativa (japonica cultivar-group) cDNA... 1310 0.0
ref|NM_189435.1| Oryza sativa (japonica cultivar-group), p... 1308 0.0
gb|AU223128.1|AU223128 AU223128 Rice shoot Oryza sativa (ja... 353 2e-094
gb|AACV01003101.1| Oryza sativa (japonica cultivar-group) c... 339 3e-090
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 339 3e-090
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 339 3e-090
dbj|AP003448.3| Oryza sativa (japonica cultivar-group) geno... 339 3e-090
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 339 3e-090
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 339 3e-090
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 339 3e-090
gb|CA999404.1|CA999404 S234H_C07 Rice cold stress germinati... 246 3e-062
gb|CF328962.1|CF328962 NACL--04-B17.g1 Rice callus plasmid ... 232 5e-058
gb|AU161543.1|AU161543 AU161543 Rice shoot Oryza sativa (ja... 230 2e-057
gb|D41064.1|D41064 RICS3328A Rice shoot Oryza sativa (japon... 194 1e-046
gb|D40622.1|D40622 RICS2706A Rice shoot Oryza sativa (japon... 180 2e-042
gb|AU161544.1|AU161544 AU161544 Rice shoot Oryza sativa (ja... 155 9e-035
gb|CF328961.1|CF328961 NACL--04-B17.b1 Rice callus plasmid ... 125 8e-026
gb|AU101957.1|AU101957 AU101957 Rice shoot Oryza sativa (ja... 109 5e-021
gb|AC123974.6| Oryza sativa chromosome 3 BAC OSJNBb0021P10 ... 54 2e-004
gb|AACV01007699.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 54 2e-004
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
>dbj|AK070623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063F13, full
insert sequence
Length = 1823
Score = 1310 bits (661), Expect = 0.0
Identities = 1030/1153 (89%)
Strand = Plus / Minus
Query: 313 tctaagtcgacgctgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgt 372
||||| |||||||||||||||| |||||||||||||| | |||||||||||| |||||||
Sbjct: 1366 tctaactcgacgctgaagcctgtgacatttgccttttgatagcttctttgtaagtcttgt 1307
Query: 373 gctgatacgtcagcgttgtctccagcagatccttgagaggcgtctttgggttccaaccta 432
|||| || |||| ||||||||||||| |||||||||||| ||||| || |||||||| |
Sbjct: 1306 gctggtaggtcaatgttgtctccagcaaatccttgagaggggtcttcggattccaaccaa 1247
Query: 433 gctgcttgttgattatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcgc 492
|||||||||||||||| |||||||| || |||||||| || |||||||| |||||||| |
Sbjct: 1246 gctgcttgttgattatggtcatgtcaggaatcctcttatcactatcatcatatccttcac 1187
Query: 493 cgtagaactgactcgagctcacgtcaatcatgggctcatccagcggtgcctctcctgaga 552
| |||||||| |||| |||||||||||||| || |||||||| |||| |||||||||||
Sbjct: 1186 catagaactgcttcgaactcacgtcaatcataggttcatccagtggtggctctcctgaga 1127
Query: 553 catttgcgtagacctctgtcatcatttgggccaactccctaacggtaacttcattgttcg 612
||||||| ||||||||||||||||||| ||||| | |||||| || ||||||||||| |
Sbjct: 1126 catttgcatagacctctgtcatcatttcagccaattgcctaacagtgacttcattgttag 1067
Query: 613 gattcccaacattgaagatgtggccattggctcgagcaggattttcaatcatcagcacta 672
||||||| ||||||||||| || |||||||| |||||||||||||||||||||| |
Sbjct: 1066 gattcccgacattgaagatttgaccattggcacgagcaggattttcaatcatcaagtgaa 1007
Query: 673 cagcttcgatagcatccttgatgtagacaaaggttctctgagactgacccccatcaacaa 732
||||||| || |||||||| ||||| ||||| |||||||| ||||| || ||||||||||
Sbjct: 1006 cagcttcaatggcatccttaatgtaaacaaaagttctctgggactggccaccatcaacaa 947
Query: 733 gcttcaagggctctctccggagcagattgttactgaagcaagccaaaacccgaggcacac 792
| |||| |||||| | || || |||||||||||||| || |||||||||||||| ||||
Sbjct: 946 gtttcaggggctcccgacgcaggagattgttactgaaacatgccaaaacccgaggaacac 887
Query: 793 cctcgctaggaccatcgacaccaggaatgaaatccatccttggcccaatccaattaaaag 852
|||| ||||||||||| ||||||||||| || ||||| ||||| ||||||||||| ||||
Sbjct: 886 cctcactaggaccatcaacaccaggaataaagtccattcttggtccaatccaattgaaag 827
Query: 853 gtctcacgattgtgaattcaaggccattttctgcaccttcagcaaatacaagcctctcaa 912
||||||| |||||||| ||||||||||||||||| ||||||||||| | |||||||||||
Sbjct: 826 gtctcacaattgtgaactcaaggccattttctgctccttcagcaaaaataagcctctcaa 767
Query: 913 taagttgcttcgcgcaagcataggaccatctttgtttcacgattggaccaaaaatacagg 972
|||| |||||||| || ||||| ||||||| |||||||| |||||||||||||| ||||
Sbjct: 766 taagctgcttcgcacatgcataagaccatcgctgtttcacaattggaccaaaaatgcagg 707
Query: 973 gcgactcatcttctttaagaacataaaattcaggttccttgcggagcgggtggtctttgg 1032
| || ||||||||||| || |||||||||||||||||||||||||| |||||||| |||
Sbjct: 706 gggattcatcttctttcagtacataaaattcaggttccttgcggagagggtggtcggtgg 647
Query: 1033 ggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatgagacgct 1092
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 646 ggaggaagctgccgatggtcttgccgtagacctcgcacgtggagaagtggatgagacgct 587
Query: 1093 tgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctgtagatgg 1152
|| ||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 586 tgttgttctcagagcagtacttgaccacagggagcgcgtcgatgaagttgctgtagatgg 527
Query: 1153 tgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttgatggtca 1212
|||| |||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct: 526 tgtcgagggggcgcgtgttgtagtcggccggcgtgcagatcgccgccaggttgatcgtca 467
Query: 1213 gatcggccatcttgatgagcccctcgagcctggagtcattcttgatgttaaggcggtgga 1272
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 466 gatcggccatcttgatgaggccctcgagcctggagtcgttcttgatgttgaggcggtgga 407
Query: 1273 aggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatcgc 1332
|||||||||| || |||||| || || |||||||||||||||||||||||||| ||||
Sbjct: 406 aggagatgcggccatggaggtggggaggggcggggtcgacgaggtggcggatcttgtcgc 347
Query: 1333 agtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagcttctcgcagaggt 1392
|||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||||
Sbjct: 346 agtagacgtcgacggcgtagacgacgtgggcggtctcggccatgagcttctcgcagaggt 287
Query: 1393 gggagccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgacggagttgc 1452
||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct: 286 gggagccgatgaagccgccggcgccgatcatgcagatggtgaggggcgcgatggggttgc 227
Query: 1453 cgtccagatccag 1465
|||||||||||||
Sbjct: 226 cgtccagatccag 214
>ref|NM_189435.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1197
Score = 1308 bits (660), Expect = 0.0
Identities = 1029/1152 (89%)
Strand = Plus / Minus
Query: 314 ctaagtcgacgctgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgtg 373
|||| |||||||||||||||| |||||||||||||| | |||||||||||| ||||||||
Sbjct: 1197 ctaactcgacgctgaagcctgtgacatttgccttttgatagcttctttgtaagtcttgtg 1138
Query: 374 ctgatacgtcagcgttgtctccagcagatccttgagaggcgtctttgggttccaacctag 433
||| || |||| ||||||||||||| |||||||||||| ||||| || |||||||| ||
Sbjct: 1137 ctggtaggtcaatgttgtctccagcaaatccttgagaggggtcttcggattccaaccaag 1078
Query: 434 ctgcttgttgattatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcgcc 493
||||||||||||||| |||||||| || |||||||| || |||||||| |||||||| ||
Sbjct: 1077 ctgcttgttgattatggtcatgtcaggaatcctcttatcactatcatcatatccttcacc 1018
Query: 494 gtagaactgactcgagctcacgtcaatcatgggctcatccagcggtgcctctcctgagac 553
|||||||| |||| |||||||||||||| || |||||||| |||| ||||||||||||
Sbjct: 1017 atagaactgcttcgaactcacgtcaatcataggttcatccagtggtggctctcctgagac 958
Query: 554 atttgcgtagacctctgtcatcatttgggccaactccctaacggtaacttcattgttcgg 613
|||||| ||||||||||||||||||| ||||| | |||||| || ||||||||||| ||
Sbjct: 957 atttgcatagacctctgtcatcatttcagccaattgcctaacagtgacttcattgttagg 898
Query: 614 attcccaacattgaagatgtggccattggctcgagcaggattttcaatcatcagcactac 673
|||||| ||||||||||| || |||||||| |||||||||||||||||||||| ||
Sbjct: 897 attcccgacattgaagatttgaccattggcacgagcaggattttcaatcatcaagtgaac 838
Query: 674 agcttcgatagcatccttgatgtagacaaaggttctctgagactgacccccatcaacaag 733
|||||| || |||||||| ||||| ||||| |||||||| ||||| || |||||||||||
Sbjct: 837 agcttcaatggcatccttaatgtaaacaaaagttctctgggactggccaccatcaacaag 778
Query: 734 cttcaagggctctctccggagcagattgttactgaagcaagccaaaacccgaggcacacc 793
|||| |||||| | || || |||||||||||||| || |||||||||||||| |||||
Sbjct: 777 tttcaggggctcccgacgcaggagattgttactgaaacatgccaaaacccgaggaacacc 718
Query: 794 ctcgctaggaccatcgacaccaggaatgaaatccatccttggcccaatccaattaaaagg 853
||| ||||||||||| ||||||||||| || ||||| ||||| ||||||||||| |||||
Sbjct: 717 ctcactaggaccatcaacaccaggaataaagtccattcttggtccaatccaattgaaagg 658
Query: 854 tctcacgattgtgaattcaaggccattttctgcaccttcagcaaatacaagcctctcaat 913
|||||| |||||||| ||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct: 657 tctcacaattgtgaactcaaggccattttctgctccttcagcaaaaataagcctctcaat 598
Query: 914 aagttgcttcgcgcaagcataggaccatctttgtttcacgattggaccaaaaatacaggg 973
||| |||||||| || ||||| ||||||| |||||||| |||||||||||||| |||||
Sbjct: 597 aagctgcttcgcacatgcataagaccatcgctgtttcacaattggaccaaaaatgcaggg 538
Query: 974 cgactcatcttctttaagaacataaaattcaggttccttgcggagcgggtggtctttggg 1033
|| ||||||||||| || |||||||||||||||||||||||||| |||||||| ||||
Sbjct: 537 ggattcatcttctttcagtacataaaattcaggttccttgcggagagggtggtcggtggg 478
Query: 1034 gaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatgagacgctt 1093
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 477 gaggaagctgccgatggtcttgccgtagacctcgcacgtggagaagtggatgagacgctt 418
Query: 1094 gctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctgtagatggt 1153
| ||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 417 gttgttctcagagcagtacttgaccacagggagcgcgtcgatgaagttgctgtagatggt 358
Query: 1154 gtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttgatggtcag 1213
||| |||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 357 gtcgagggggcgcgtgttgtagtcggccggcgtgcagatcgccgccaggttgatcgtcag 298
Query: 1214 atcggccatcttgatgagcccctcgagcctggagtcattcttgatgttaaggcggtggaa 1273
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 297 atcggccatcttgatgaggccctcgagcctggagtcgttcttgatgttgaggcggtggaa 238
Query: 1274 ggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatcgca 1333
||||||||| || |||||| || || |||||||||||||||||||||||||| |||||
Sbjct: 237 ggagatgcggccatggaggtggggaggggcggggtcgacgaggtggcggatcttgtcgca 178
Query: 1334 gtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagcttctcgcagaggtg 1393
||| |||||||||||| |||||| ||| |||||||||||||||||||||||||||||
Sbjct: 177 gtagacgtcgacggcgtagacgacgtgggcggtctcggccatgagcttctcgcagaggtg 118
Query: 1394 ggagccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgacggagttgcc 1453
|||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||
Sbjct: 117 ggagccgatgaagccgccggcgccgatcatgcagatggtgaggggcgcgatggggttgcc 58
Query: 1454 gtccagatccag 1465
||||||||||||
Sbjct: 57 gtccagatccag 46
>gb|AU223128.1|AU223128 AU223128 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S3905, mRNA sequence
Length = 475
Score = 353 bits (178), Expect = 2e-094
Identities = 244/266 (91%)
Strand = Plus / Minus
Query: 1200 aggttgatggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgatg 1259
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 475 aggttgatcgtcagatcggccatcttgatgaggccctcgagcctggagtcgttcttgatg 416
Query: 1260 ttaaggcggtggaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtgg 1319
|| |||||||||||||||||||| || |||||| || || ||||||||||||||||||
Sbjct: 415 ttgaggcggtggaaggagatgcggccatggaggtggggaggggcggggtcgacgaggtgg 356
Query: 1320 cggatcttatcgcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagc 1379
|||||||| |||||||| |||||||||||| |||||| ||| |||||||||||||||
Sbjct: 355 cggatcttgtcgcagtagacgtcgacggcgtagacgacgtgggcggtctcggccatgagc 296
Query: 1380 ttctcgcagaggtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggggc 1439
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 295 ttctcgcagaggtgggagccgatgaagccgccggcgccgatcatgcagatggtgaggggc 236
Query: 1440 gcgacggagttgccgtccagatccag 1465
|||| || ||||||||||||||||||
Sbjct: 235 gcgatggggttgccgtccagatccag 210
>gb|AACV01003101.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003101, whole
genome shotgun sequence
Length = 6719
Score = 339 bits (171), Expect = 3e-090
Identities = 234/255 (91%)
Strand = Plus / Minus
Query: 1211 cagatcggccatcttgatgagcccctcgagcctggagtcattcttgatgttaaggcggtg 1270
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct: 1859 cagatcggccatcttgatgaggccctcgagcctggagtcgttcttgatgttgaggcggtg 1800
Query: 1271 gaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatc 1330
|||||||||||| || |||||| || || |||||||||||||||||||||||||| ||
Sbjct: 1799 gaaggagatgcggccatggaggtggggaggggcggggtcgacgaggtggcggatcttgtc 1740
Query: 1331 gcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagcttctcgcagag 1390
|||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 1739 gcagtagacgtcgacggcgtagacgacgtgggcggtctcggccatgagcttctcgcagag 1680
Query: 1391 gtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgacggagtt 1450
||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 1679 gtgggagccgatgaagccgccggcgccgatcatgcagatggtgaggggcgcgatggggtt 1620
Query: 1451 gccgtccagatccag 1465
|||||||||||||||
Sbjct: 1619 gccgtccagatccag 1605
Score = 170 bits (86), Expect = 2e-039
Identities = 104/110 (94%)
Strand = Plus / Minus
Query: 1009 ccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcgc 1068
|||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 2234 ccttgcggagagggtggtcggtggggaggaagctgccgatggtcttgccgtagacctcgc 2175
Query: 1069 acgtggagaagtggatgagacgcttgctgttctcggagcagtacttgacc 1118
|||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 2174 acgtggagaagtggatgagacgcttgttgttctcagagcagtacttgacc 2125
Score = 165 bits (83), Expect = 9e-038
Identities = 122/135 (90%)
Strand = Plus / Minus
Query: 761 gttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcgacaccaggaat 820
||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 3542 gttactgaaacatgccaaaacccgaggaacaccctcactaggaccatcaacaccaggaat 3483
Query: 821 gaaatccatccttggcccaatccaattaaaaggtctcacgattgtgaattcaaggccatt 880
|| ||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 3482 aaagtccattcttggtccaatccaattgaaaggtctcacaattgtgaactcaaggccatt 3423
Query: 881 ttctgcaccttcagc 895
|||||| ||||||||
Sbjct: 3422 ttctgctccttcagc 3408
Score = 143 bits (72), Expect = 3e-031
Identities = 120/136 (88%)
Strand = Plus / Minus
Query: 432 agctgcttgttgattatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcg 491
||||||||||||||||| |||||||| || |||||||| || |||||||| ||||||||
Sbjct: 4132 agctgcttgttgattatggtcatgtcaggaatcctcttatcactatcatcatatccttca 4073
Query: 492 ccgtagaactgactcgagctcacgtcaatcatgggctcatccagcggtgcctctcctgag 551
|| |||||||| |||| |||||||||||||| || |||||||| |||| ||||||||||
Sbjct: 4072 ccatagaactgcttcgaactcacgtcaatcataggttcatccagtggtggctctcctgag 4013
Query: 552 acatttgcgtagacct 567
|||||||| |||||||
Sbjct: 4012 acatttgcatagacct 3997
Score = 137 bits (69), Expect = 2e-029
Identities = 108/121 (89%)
Strand = Plus / Minus
Query: 313 tctaagtcgacgctgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgt 372
||||| |||||||||||||||| |||||||||||||| | |||||||||||| |||||||
Sbjct: 4345 tctaactcgacgctgaagcctgtgacatttgccttttgatagcttctttgtaagtcttgt 4286
Query: 373 gctgatacgtcagcgttgtctccagcagatccttgagaggcgtctttgggttccaaccta 432
|||| || |||| ||||||||||||| |||||||||||| ||||| || ||||||||||
Sbjct: 4285 gctggtaggtcaatgttgtctccagcaaatccttgagaggggtcttcggattccaaccta 4226
Query: 433 g 433
|
Sbjct: 4225 g 4225
Score = 127 bits (64), Expect = 2e-026
Identities = 85/92 (92%)
Strand = Plus / Minus
Query: 1116 accactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtag 1175
||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 2037 accacagggagcgcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttgtag 1978
Query: 1176 tccgccggcgtgcagatagccgccaggttgat 1207
|| |||||||||||||| ||||||||||||||
Sbjct: 1977 tcggccggcgtgcagatcgccgccaggttgat 1946
Score = 123 bits (62), Expect = 3e-025
Identities = 98/110 (89%)
Strand = Plus / Minus
Query: 902 aagcctctcaataagttgcttcgcgcaagcataggaccatctttgtttcacgattggacc 961
||||||||||||||| |||||||| || ||||| ||||||| |||||||| ||||||||
Sbjct: 3325 aagcctctcaataagctgcttcgcacatgcataagaccatcgctgtttcacaattggacc 3266
Query: 962 aaaaatacagggcgactcatcttctttaagaacataaaattcaggttcct 1011
|||||| ||||| || ||||||||||| || |||||||||||||||||||
Sbjct: 3265 aaaaatgcagggggattcatcttctttcagtacataaaattcaggttcct 3216
Score = 101 bits (51), Expect = 1e-018
Identities = 84/95 (88%)
Strand = Plus / Minus
Query: 564 acctctgtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaaca 623
|||||||||||||||| ||||| | |||||| || ||||||||||| |||||||| |||
Sbjct: 3921 acctctgtcatcatttcagccaattgcctaacagtgacttcattgttaggattcccgaca 3862
Query: 624 ttgaagatgtggccattggctcgagcaggattttc 658
|||||||| || |||||||| ||||||||||||||
Sbjct: 3861 ttgaagatttgaccattggcacgagcaggattttc 3827
Score = 67.9 bits (34), Expect = 2e-008
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 672 acagcttcgatagcatccttgatgtagacaaaggttctctgagactgacccccatcaaca 731
|||||||| || |||||||| ||||| ||||| |||||||| ||||| || |||||||||
Sbjct: 3723 acagcttcaatggcatccttaatgtaaacaaaagttctctgggactggccaccatcaaca 3664
Query: 732 agcttcaagggctc 745
|| |||| ||||||
Sbjct: 3663 agtttcaggggctc 3650
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 339 bits (171), Expect = 3e-090
Identities = 234/255 (91%)
Strand = Plus / Plus
Query: 1211 cagatcggccatcttgatgagcccctcgagcctggagtcattcttgatgttaaggcggtg 1270
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct: 42814736 cagatcggccatcttgatgaggccctcgagcctggagtcgttcttgatgttgaggcggtg 42814795
Query: 1271 gaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatc 1330
|||||||||||| || |||||| || || |||||||||||||||||||||||||| ||
Sbjct: 42814796 gaaggagatgcggccatggaggtggggaggggcggggtcgacgaggtggcggatcttgtc 42814855
Query: 1331 gcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagcttctcgcagag 1390
|||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 42814856 gcagtagacgtcgacggcgtagacgacgtgggcggtctcggccatgagcttctcgcagag 42814915
Query: 1391 gtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgacggagtt 1450
||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 42814916 gtgggagccgatgaagccgccggcgccgatcatgcagatggtgaggggcgcgatggggtt 42814975
Query: 1451 gccgtccagatccag 1465
|||||||||||||||
Sbjct: 42814976 gccgtccagatccag 42814990
Score = 170 bits (86), Expect = 2e-039
Identities = 104/110 (94%)
Strand = Plus / Plus
Query: 1009 ccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcgc 1068
|||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 42814361 ccttgcggagagggtggtcggtggggaggaagctgccgatggtcttgccgtagacctcgc 42814420
Query: 1069 acgtggagaagtggatgagacgcttgctgttctcggagcagtacttgacc 1118
|||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 42814421 acgtggagaagtggatgagacgcttgttgttctcagagcagtacttgacc 42814470
Score = 165 bits (83), Expect = 9e-038
Identities = 122/135 (90%)
Strand = Plus / Plus
Query: 761 gttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcgacaccaggaat 820
||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 42813053 gttactgaaacatgccaaaacccgaggaacaccctcactaggaccatcaacaccaggaat 42813112
Query: 821 gaaatccatccttggcccaatccaattaaaaggtctcacgattgtgaattcaaggccatt 880
|| ||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 42813113 aaagtccattcttggtccaatccaattgaaaggtctcacaattgtgaactcaaggccatt 42813172
Query: 881 ttctgcaccttcagc 895
|||||| ||||||||
Sbjct: 42813173 ttctgctccttcagc 42813187
Score = 143 bits (72), Expect = 3e-031
Identities = 120/136 (88%)
Strand = Plus / Plus
Query: 432 agctgcttgttgattatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcg 491
||||||||||||||||| |||||||| || |||||||| || |||||||| ||||||||
Sbjct: 42812463 agctgcttgttgattatggtcatgtcaggaatcctcttatcactatcatcatatccttca 42812522
Query: 492 ccgtagaactgactcgagctcacgtcaatcatgggctcatccagcggtgcctctcctgag 551
|| |||||||| |||| |||||||||||||| || |||||||| |||| ||||||||||
Sbjct: 42812523 ccatagaactgcttcgaactcacgtcaatcataggttcatccagtggtggctctcctgag 42812582
Query: 552 acatttgcgtagacct 567
|||||||| |||||||
Sbjct: 42812583 acatttgcatagacct 42812598
Score = 137 bits (69), Expect = 2e-029
Identities = 108/121 (89%)
Strand = Plus / Plus
Query: 313 tctaagtcgacgctgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgt 372
||||| |||||||||||||||| |||||||||||||| | |||||||||||| |||||||
Sbjct: 42812250 tctaactcgacgctgaagcctgtgacatttgccttttgatagcttctttgtaagtcttgt 42812309
Query: 373 gctgatacgtcagcgttgtctccagcagatccttgagaggcgtctttgggttccaaccta 432
|||| || |||| ||||||||||||| |||||||||||| ||||| || ||||||||||
Sbjct: 42812310 gctggtaggtcaatgttgtctccagcaaatccttgagaggggtcttcggattccaaccta 42812369
Query: 433 g 433
|
Sbjct: 42812370 g 42812370
Score = 127 bits (64), Expect = 2e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 1116 accactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtag 1175
||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 42814558 accacagggagcgcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttgtag 42814617
Query: 1176 tccgccggcgtgcagatagccgccaggttgat 1207
|| |||||||||||||| ||||||||||||||
Sbjct: 42814618 tcggccggcgtgcagatcgccgccaggttgat 42814649
Score = 123 bits (62), Expect = 3e-025
Identities = 98/110 (89%)
Strand = Plus / Plus
Query: 902 aagcctctcaataagttgcttcgcgcaagcataggaccatctttgtttcacgattggacc 961
||||||||||||||| |||||||| || ||||| ||||||| |||||||| ||||||||
Sbjct: 42813270 aagcctctcaataagctgcttcgcacatgcataagaccatcgctgtttcacaattggacc 42813329
Query: 962 aaaaatacagggcgactcatcttctttaagaacataaaattcaggttcct 1011
|||||| ||||| || ||||||||||| || |||||||||||||||||||
Sbjct: 42813330 aaaaatgcagggggattcatcttctttcagtacataaaattcaggttcct 42813379
Score = 101 bits (51), Expect = 1e-018
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 564 acctctgtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaaca 623
|||||||||||||||| ||||| | |||||| || ||||||||||| |||||||| |||
Sbjct: 42812674 acctctgtcatcatttcagccaattgcctaacagtgacttcattgttaggattcccgaca 42812733
Query: 624 ttgaagatgtggccattggctcgagcaggattttc 658
|||||||| || |||||||| ||||||||||||||
Sbjct: 42812734 ttgaagatttgaccattggcacgagcaggattttc 42812768
Score = 67.9 bits (34), Expect = 2e-008
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 672 acagcttcgatagcatccttgatgtagacaaaggttctctgagactgacccccatcaaca 731
|||||||| || |||||||| ||||| ||||| |||||||| ||||| || |||||||||
Sbjct: 42812872 acagcttcaatggcatccttaatgtaaacaaaagttctctgggactggccaccatcaaca 42812931
Query: 732 agcttcaagggctc 745
|| |||| ||||||
Sbjct: 42812932 agtttcaggggctc 42812945
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 339 bits (171), Expect = 3e-090
Identities = 234/255 (91%)
Strand = Plus / Plus
Query: 1211 cagatcggccatcttgatgagcccctcgagcctggagtcattcttgatgttaaggcggtg 1270
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct: 2443030 cagatcggccatcttgatgaggccctcgagcctggagtcgttcttgatgttgaggcggtg 2443089
Query: 1271 gaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatc 1330
|||||||||||| || |||||| || || |||||||||||||||||||||||||| ||
Sbjct: 2443090 gaaggagatgcggccatggaggtggggaggggcggggtcgacgaggtggcggatcttgtc 2443149
Query: 1331 gcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagcttctcgcagag 1390
|||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 2443150 gcagtagacgtcgacggcgtagacgacgtgggcggtctcggccatgagcttctcgcagag 2443209
Query: 1391 gtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgacggagtt 1450
||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 2443210 gtgggagccgatgaagccgccggcgccgatcatgcagatggtgaggggcgcgatggggtt 2443269
Query: 1451 gccgtccagatccag 1465
|||||||||||||||
Sbjct: 2443270 gccgtccagatccag 2443284
Score = 170 bits (86), Expect = 2e-039
Identities = 104/110 (94%)
Strand = Plus / Plus
Query: 1009 ccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcgc 1068
|||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 2442655 ccttgcggagagggtggtcggtggggaggaagctgccgatggtcttgccgtagacctcgc 2442714
Query: 1069 acgtggagaagtggatgagacgcttgctgttctcggagcagtacttgacc 1118
|||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 2442715 acgtggagaagtggatgagacgcttgttgttctcagagcagtacttgacc 2442764
Score = 165 bits (83), Expect = 9e-038
Identities = 122/135 (90%)
Strand = Plus / Plus
Query: 761 gttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcgacaccaggaat 820
||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 2441347 gttactgaaacatgccaaaacccgaggaacaccctcactaggaccatcaacaccaggaat 2441406
Query: 821 gaaatccatccttggcccaatccaattaaaaggtctcacgattgtgaattcaaggccatt 880
|| ||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 2441407 aaagtccattcttggtccaatccaattgaaaggtctcacaattgtgaactcaaggccatt 2441466
Query: 881 ttctgcaccttcagc 895
|||||| ||||||||
Sbjct: 2441467 ttctgctccttcagc 2441481
Score = 143 bits (72), Expect = 3e-031
Identities = 120/136 (88%)
Strand = Plus / Plus
Query: 432 agctgcttgttgattatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcg 491
||||||||||||||||| |||||||| || |||||||| || |||||||| ||||||||
Sbjct: 2440757 agctgcttgttgattatggtcatgtcaggaatcctcttatcactatcatcatatccttca 2440816
Query: 492 ccgtagaactgactcgagctcacgtcaatcatgggctcatccagcggtgcctctcctgag 551
|| |||||||| |||| |||||||||||||| || |||||||| |||| ||||||||||
Sbjct: 2440817 ccatagaactgcttcgaactcacgtcaatcataggttcatccagtggtggctctcctgag 2440876
Query: 552 acatttgcgtagacct 567
|||||||| |||||||
Sbjct: 2440877 acatttgcatagacct 2440892
Score = 137 bits (69), Expect = 2e-029
Identities = 108/121 (89%)
Strand = Plus / Plus
Query: 313 tctaagtcgacgctgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgt 372
||||| |||||||||||||||| |||||||||||||| | |||||||||||| |||||||
Sbjct: 2440544 tctaactcgacgctgaagcctgtgacatttgccttttgatagcttctttgtaagtcttgt 2440603
Query: 373 gctgatacgtcagcgttgtctccagcagatccttgagaggcgtctttgggttccaaccta 432
|||| || |||| ||||||||||||| |||||||||||| ||||| || ||||||||||
Sbjct: 2440604 gctggtaggtcaatgttgtctccagcaaatccttgagaggggtcttcggattccaaccta 2440663
Query: 433 g 433
|
Sbjct: 2440664 g 2440664
Score = 127 bits (64), Expect = 2e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 1116 accactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtag 1175
||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 2442852 accacagggagcgcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttgtag 2442911
Query: 1176 tccgccggcgtgcagatagccgccaggttgat 1207
|| |||||||||||||| ||||||||||||||
Sbjct: 2442912 tcggccggcgtgcagatcgccgccaggttgat 2442943
Score = 123 bits (62), Expect = 3e-025
Identities = 98/110 (89%)
Strand = Plus / Plus
Query: 902 aagcctctcaataagttgcttcgcgcaagcataggaccatctttgtttcacgattggacc 961
||||||||||||||| |||||||| || ||||| ||||||| |||||||| ||||||||
Sbjct: 2441564 aagcctctcaataagctgcttcgcacatgcataagaccatcgctgtttcacaattggacc 2441623
Query: 962 aaaaatacagggcgactcatcttctttaagaacataaaattcaggttcct 1011
|||||| ||||| || ||||||||||| || |||||||||||||||||||
Sbjct: 2441624 aaaaatgcagggggattcatcttctttcagtacataaaattcaggttcct 2441673
Score = 101 bits (51), Expect = 1e-018
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 564 acctctgtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaaca 623
|||||||||||||||| ||||| | |||||| || ||||||||||| |||||||| |||
Sbjct: 2440968 acctctgtcatcatttcagccaattgcctaacagtgacttcattgttaggattcccgaca 2441027
Query: 624 ttgaagatgtggccattggctcgagcaggattttc 658
|||||||| || |||||||| ||||||||||||||
Sbjct: 2441028 ttgaagatttgaccattggcacgagcaggattttc 2441062
Score = 67.9 bits (34), Expect = 2e-008
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 672 acagcttcgatagcatccttgatgtagacaaaggttctctgagactgacccccatcaaca 731
|||||||| || |||||||| ||||| ||||| |||||||| ||||| || |||||||||
Sbjct: 2441166 acagcttcaatggcatccttaatgtaaacaaaagttctctgggactggccaccatcaaca 2441225
Query: 732 agcttcaagggctc 745
|| |||| ||||||
Sbjct: 2441226 agtttcaggggctc 2441239
>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1656_A11
Length = 148887
Score = 339 bits (171), Expect = 3e-090
Identities = 234/255 (91%)
Strand = Plus / Plus
Query: 1211 cagatcggccatcttgatgagcccctcgagcctggagtcattcttgatgttaaggcggtg 1270
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct: 66831 cagatcggccatcttgatgaggccctcgagcctggagtcgttcttgatgttgaggcggtg 66890
Query: 1271 gaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatc 1330
|||||||||||| || |||||| || || |||||||||||||||||||||||||| ||
Sbjct: 66891 gaaggagatgcggccatggaggtggggaggggcggggtcgacgaggtggcggatcttgtc 66950
Query: 1331 gcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagcttctcgcagag 1390
|||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 66951 gcagtagacgtcgacggcgtagacgacgtgggcggtctcggccatgagcttctcgcagag 67010
Query: 1391 gtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgacggagtt 1450
||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 67011 gtgggagccgatgaagccgccggcgccgatcatgcagatggtgaggggcgcgatggggtt 67070
Query: 1451 gccgtccagatccag 1465
|||||||||||||||
Sbjct: 67071 gccgtccagatccag 67085
Score = 170 bits (86), Expect = 2e-039
Identities = 104/110 (94%)
Strand = Plus / Plus
Query: 1009 ccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcgc 1068
|||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 66456 ccttgcggagagggtggtcggtggggaggaagctgccgatggtcttgccgtagacctcgc 66515
Query: 1069 acgtggagaagtggatgagacgcttgctgttctcggagcagtacttgacc 1118
|||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 66516 acgtggagaagtggatgagacgcttgttgttctcagagcagtacttgacc 66565
Score = 165 bits (83), Expect = 9e-038
Identities = 122/135 (90%)
Strand = Plus / Plus
Query: 761 gttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcgacaccaggaat 820
||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 65148 gttactgaaacatgccaaaacccgaggaacaccctcactaggaccatcaacaccaggaat 65207
Query: 821 gaaatccatccttggcccaatccaattaaaaggtctcacgattgtgaattcaaggccatt 880
|| ||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 65208 aaagtccattcttggtccaatccaattgaaaggtctcacaattgtgaactcaaggccatt 65267
Query: 881 ttctgcaccttcagc 895
|||||| ||||||||
Sbjct: 65268 ttctgctccttcagc 65282
Score = 143 bits (72), Expect = 3e-031
Identities = 120/136 (88%)
Strand = Plus / Plus
Query: 432 agctgcttgttgattatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcg 491
||||||||||||||||| |||||||| || |||||||| || |||||||| ||||||||
Sbjct: 64558 agctgcttgttgattatggtcatgtcaggaatcctcttatcactatcatcatatccttca 64617
Query: 492 ccgtagaactgactcgagctcacgtcaatcatgggctcatccagcggtgcctctcctgag 551
|| |||||||| |||| |||||||||||||| || |||||||| |||| ||||||||||
Sbjct: 64618 ccatagaactgcttcgaactcacgtcaatcataggttcatccagtggtggctctcctgag 64677
Query: 552 acatttgcgtagacct 567
|||||||| |||||||
Sbjct: 64678 acatttgcatagacct 64693
Score = 137 bits (69), Expect = 2e-029
Identities = 108/121 (89%)
Strand = Plus / Plus
Query: 313 tctaagtcgacgctgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgt 372
||||| |||||||||||||||| |||||||||||||| | |||||||||||| |||||||
Sbjct: 64345 tctaactcgacgctgaagcctgtgacatttgccttttgatagcttctttgtaagtcttgt 64404
Query: 373 gctgatacgtcagcgttgtctccagcagatccttgagaggcgtctttgggttccaaccta 432
|||| || |||| ||||||||||||| |||||||||||| ||||| || ||||||||||
Sbjct: 64405 gctggtaggtcaatgttgtctccagcaaatccttgagaggggtcttcggattccaaccta 64464
Query: 433 g 433
|
Sbjct: 64465 g 64465
Score = 127 bits (64), Expect = 2e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 1116 accactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtag 1175
||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 66653 accacagggagcgcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttgtag 66712
Query: 1176 tccgccggcgtgcagatagccgccaggttgat 1207
|| |||||||||||||| ||||||||||||||
Sbjct: 66713 tcggccggcgtgcagatcgccgccaggttgat 66744
Score = 123 bits (62), Expect = 3e-025
Identities = 98/110 (89%)
Strand = Plus / Plus
Query: 902 aagcctctcaataagttgcttcgcgcaagcataggaccatctttgtttcacgattggacc 961
||||||||||||||| |||||||| || ||||| ||||||| |||||||| ||||||||
Sbjct: 65365 aagcctctcaataagctgcttcgcacatgcataagaccatcgctgtttcacaattggacc 65424
Query: 962 aaaaatacagggcgactcatcttctttaagaacataaaattcaggttcct 1011
|||||| ||||| || ||||||||||| || |||||||||||||||||||
Sbjct: 65425 aaaaatgcagggggattcatcttctttcagtacataaaattcaggttcct 65474
Score = 101 bits (51), Expect = 1e-018
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 564 acctctgtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaaca 623
|||||||||||||||| ||||| | |||||| || ||||||||||| |||||||| |||
Sbjct: 64769 acctctgtcatcatttcagccaattgcctaacagtgacttcattgttaggattcccgaca 64828
Query: 624 ttgaagatgtggccattggctcgagcaggattttc 658
|||||||| || |||||||| ||||||||||||||
Sbjct: 64829 ttgaagatttgaccattggcacgagcaggattttc 64863
Score = 67.9 bits (34), Expect = 2e-008
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 672 acagcttcgatagcatccttgatgtagacaaaggttctctgagactgacccccatcaaca 731
|||||||| || |||||||| ||||| ||||| |||||||| ||||| || |||||||||
Sbjct: 64967 acagcttcaatggcatccttaatgtaaacaaaagttctctgggactggccaccatcaaca 65026
Query: 732 agcttcaagggctc 745
|| |||| ||||||
Sbjct: 65027 agtttcaggggctc 65040
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 339 bits (171), Expect = 3e-090
Identities = 234/255 (91%)
Strand = Plus / Plus
Query: 1211 cagatcggccatcttgatgagcccctcgagcctggagtcattcttgatgttaaggcggtg 1270
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct: 16925874 cagatcggccatcttgatgaggccctcgagcctggagtcgttcttgatgttgaggcggtg 16925933
Query: 1271 gaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatc 1330
|||||||||||| || |||||| || || |||||||||||||||||||||||||| ||
Sbjct: 16925934 gaaggagatgcggccatggaggtggggaggggcggggtcgacgaggtggcggatcttgtc 16925993
Query: 1331 gcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagcttctcgcagag 1390
|||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 16925994 gcagtagacgtcgacggcgtagacgacgtgggcggtctcggccatgagcttctcgcagag 16926053
Query: 1391 gtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgacggagtt 1450
||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 16926054 gtgggagccgatgaagccgccggcgccgatcatgcagatggtgaggggcgcgatggggtt 16926113
Query: 1451 gccgtccagatccag 1465
|||||||||||||||
Sbjct: 16926114 gccgtccagatccag 16926128
Score = 170 bits (86), Expect = 2e-039
Identities = 104/110 (94%)
Strand = Plus / Plus
Query: 1009 ccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcgc 1068
|||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 16925499 ccttgcggagagggtggtcggtggggaggaagctgccgatggtcttgccgtagacctcgc 16925558
Query: 1069 acgtggagaagtggatgagacgcttgctgttctcggagcagtacttgacc 1118
|||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 16925559 acgtggagaagtggatgagacgcttgttgttctcagagcagtacttgacc 16925608
Score = 165 bits (83), Expect = 9e-038
Identities = 122/135 (90%)
Strand = Plus / Plus
Query: 761 gttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcgacaccaggaat 820
||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 16924191 gttactgaaacatgccaaaacccgaggaacaccctcactaggaccatcaacaccaggaat 16924250
Query: 821 gaaatccatccttggcccaatccaattaaaaggtctcacgattgtgaattcaaggccatt 880
|| ||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 16924251 aaagtccattcttggtccaatccaattgaaaggtctcacaattgtgaactcaaggccatt 16924310
Query: 881 ttctgcaccttcagc 895
|||||| ||||||||
Sbjct: 16924311 ttctgctccttcagc 16924325
Score = 143 bits (72), Expect = 3e-031
Identities = 120/136 (88%)
Strand = Plus / Plus
Query: 432 agctgcttgttgattatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcg 491
||||||||||||||||| |||||||| || |||||||| || |||||||| ||||||||
Sbjct: 16923601 agctgcttgttgattatggtcatgtcaggaatcctcttatcactatcatcatatccttca 16923660
Query: 492 ccgtagaactgactcgagctcacgtcaatcatgggctcatccagcggtgcctctcctgag 551
|| |||||||| |||| |||||||||||||| || |||||||| |||| ||||||||||
Sbjct: 16923661 ccatagaactgcttcgaactcacgtcaatcataggttcatccagtggtggctctcctgag 16923720
Query: 552 acatttgcgtagacct 567
|||||||| |||||||
Sbjct: 16923721 acatttgcatagacct 16923736
Score = 137 bits (69), Expect = 2e-029
Identities = 108/121 (89%)
Strand = Plus / Plus
Query: 313 tctaagtcgacgctgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgt 372
||||| |||||||||||||||| |||||||||||||| | |||||||||||| |||||||
Sbjct: 16923388 tctaactcgacgctgaagcctgtgacatttgccttttgatagcttctttgtaagtcttgt 16923447
Query: 373 gctgatacgtcagcgttgtctccagcagatccttgagaggcgtctttgggttccaaccta 432
|||| || |||| ||||||||||||| |||||||||||| ||||| || ||||||||||
Sbjct: 16923448 gctggtaggtcaatgttgtctccagcaaatccttgagaggggtcttcggattccaaccta 16923507
Query: 433 g 433
|
Sbjct: 16923508 g 16923508
Score = 127 bits (64), Expect = 2e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 1116 accactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtag 1175
||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 16925696 accacagggagcgcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttgtag 16925755
Query: 1176 tccgccggcgtgcagatagccgccaggttgat 1207
|| |||||||||||||| ||||||||||||||
Sbjct: 16925756 tcggccggcgtgcagatcgccgccaggttgat 16925787
Score = 123 bits (62), Expect = 3e-025
Identities = 98/110 (89%)
Strand = Plus / Plus
Query: 902 aagcctctcaataagttgcttcgcgcaagcataggaccatctttgtttcacgattggacc 961
||||||||||||||| |||||||| || ||||| ||||||| |||||||| ||||||||
Sbjct: 16924408 aagcctctcaataagctgcttcgcacatgcataagaccatcgctgtttcacaattggacc 16924467
Query: 962 aaaaatacagggcgactcatcttctttaagaacataaaattcaggttcct 1011
|||||| ||||| || ||||||||||| || |||||||||||||||||||
Sbjct: 16924468 aaaaatgcagggggattcatcttctttcagtacataaaattcaggttcct 16924517
Score = 101 bits (51), Expect = 1e-018
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 564 acctctgtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaaca 623
|||||||||||||||| ||||| | |||||| || ||||||||||| |||||||| |||
Sbjct: 16923812 acctctgtcatcatttcagccaattgcctaacagtgacttcattgttaggattcccgaca 16923871
Query: 624 ttgaagatgtggccattggctcgagcaggattttc 658
|||||||| || |||||||| ||||||||||||||
Sbjct: 16923872 ttgaagatttgaccattggcacgagcaggattttc 16923906
Score = 67.9 bits (34), Expect = 2e-008
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 672 acagcttcgatagcatccttgatgtagacaaaggttctctgagactgacccccatcaaca 731
|||||||| || |||||||| ||||| ||||| |||||||| ||||| || |||||||||
Sbjct: 16924010 acagcttcaatggcatccttaatgtaaacaaaagttctctgggactggccaccatcaaca 16924069
Query: 732 agcttcaagggctc 745
|| |||| ||||||
Sbjct: 16924070 agtttcaggggctc 16924083
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 339 bits (171), Expect = 3e-090
Identities = 234/255 (91%)
Strand = Plus / Plus
Query: 1211 cagatcggccatcttgatgagcccctcgagcctggagtcattcttgatgttaaggcggtg 1270
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct: 42127595 cagatcggccatcttgatgaggccctcgagcctggagtcgttcttgatgttgaggcggtg 42127654
Query: 1271 gaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatc 1330
|||||||||||| || |||||| || || |||||||||||||||||||||||||| ||
Sbjct: 42127655 gaaggagatgcggccatggaggtggggaggggcggggtcgacgaggtggcggatcttgtc 42127714
Query: 1331 gcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagcttctcgcagag 1390
|||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 42127715 gcagtagacgtcgacggcgtagacgacgtgggcggtctcggccatgagcttctcgcagag 42127774
Query: 1391 gtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgacggagtt 1450
||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 42127775 gtgggagccgatgaagccgccggcgccgatcatgcagatggtgaggggcgcgatggggtt 42127834
Query: 1451 gccgtccagatccag 1465
|||||||||||||||
Sbjct: 42127835 gccgtccagatccag 42127849
Score = 170 bits (86), Expect = 2e-039
Identities = 104/110 (94%)
Strand = Plus / Plus
Query: 1009 ccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcgc 1068
|||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 42127220 ccttgcggagagggtggtcggtggggaggaagctgccgatggtcttgccgtagacctcgc 42127279
Query: 1069 acgtggagaagtggatgagacgcttgctgttctcggagcagtacttgacc 1118
|||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 42127280 acgtggagaagtggatgagacgcttgttgttctcagagcagtacttgacc 42127329
Score = 165 bits (83), Expect = 9e-038
Identities = 122/135 (90%)
Strand = Plus / Plus
Query: 761 gttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcgacaccaggaat 820
||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 42125912 gttactgaaacatgccaaaacccgaggaacaccctcactaggaccatcaacaccaggaat 42125971
Query: 821 gaaatccatccttggcccaatccaattaaaaggtctcacgattgtgaattcaaggccatt 880
|| ||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 42125972 aaagtccattcttggtccaatccaattgaaaggtctcacaattgtgaactcaaggccatt 42126031
Query: 881 ttctgcaccttcagc 895
|||||| ||||||||
Sbjct: 42126032 ttctgctccttcagc 42126046
Score = 143 bits (72), Expect = 3e-031
Identities = 120/136 (88%)
Strand = Plus / Plus
Query: 432 agctgcttgttgattatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcg 491
||||||||||||||||| |||||||| || |||||||| || |||||||| ||||||||
Sbjct: 42125322 agctgcttgttgattatggtcatgtcaggaatcctcttatcactatcatcatatccttca 42125381
Query: 492 ccgtagaactgactcgagctcacgtcaatcatgggctcatccagcggtgcctctcctgag 551
|| |||||||| |||| |||||||||||||| || |||||||| |||| ||||||||||
Sbjct: 42125382 ccatagaactgcttcgaactcacgtcaatcataggttcatccagtggtggctctcctgag 42125441
Query: 552 acatttgcgtagacct 567
|||||||| |||||||
Sbjct: 42125442 acatttgcatagacct 42125457
Score = 137 bits (69), Expect = 2e-029
Identities = 108/121 (89%)
Strand = Plus / Plus
Query: 313 tctaagtcgacgctgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgt 372
||||| |||||||||||||||| |||||||||||||| | |||||||||||| |||||||
Sbjct: 42125109 tctaactcgacgctgaagcctgtgacatttgccttttgatagcttctttgtaagtcttgt 42125168
Query: 373 gctgatacgtcagcgttgtctccagcagatccttgagaggcgtctttgggttccaaccta 432
|||| || |||| ||||||||||||| |||||||||||| ||||| || ||||||||||
Sbjct: 42125169 gctggtaggtcaatgttgtctccagcaaatccttgagaggggtcttcggattccaaccta 42125228
Query: 433 g 433
|
Sbjct: 42125229 g 42125229
Score = 127 bits (64), Expect = 2e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 1116 accactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtag 1175
||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 42127417 accacagggagcgcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttgtag 42127476
Query: 1176 tccgccggcgtgcagatagccgccaggttgat 1207
|| |||||||||||||| ||||||||||||||
Sbjct: 42127477 tcggccggcgtgcagatcgccgccaggttgat 42127508
Score = 123 bits (62), Expect = 3e-025
Identities = 98/110 (89%)
Strand = Plus / Plus
Query: 902 aagcctctcaataagttgcttcgcgcaagcataggaccatctttgtttcacgattggacc 961
||||||||||||||| |||||||| || ||||| ||||||| |||||||| ||||||||
Sbjct: 42126129 aagcctctcaataagctgcttcgcacatgcataagaccatcgctgtttcacaattggacc 42126188
Query: 962 aaaaatacagggcgactcatcttctttaagaacataaaattcaggttcct 1011
|||||| ||||| || ||||||||||| || |||||||||||||||||||
Sbjct: 42126189 aaaaatgcagggggattcatcttctttcagtacataaaattcaggttcct 42126238
Score = 101 bits (51), Expect = 1e-018
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 564 acctctgtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaaca 623
|||||||||||||||| ||||| | |||||| || ||||||||||| |||||||| |||
Sbjct: 42125533 acctctgtcatcatttcagccaattgcctaacagtgacttcattgttaggattcccgaca 42125592
Query: 624 ttgaagatgtggccattggctcgagcaggattttc 658
|||||||| || |||||||| ||||||||||||||
Sbjct: 42125593 ttgaagatttgaccattggcacgagcaggattttc 42125627
Score = 67.9 bits (34), Expect = 2e-008
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 672 acagcttcgatagcatccttgatgtagacaaaggttctctgagactgacccccatcaaca 731
|||||||| || |||||||| ||||| ||||| |||||||| ||||| || |||||||||
Sbjct: 42125731 acagcttcaatggcatccttaatgtaaacaaaagttctctgggactggccaccatcaaca 42125790
Query: 732 agcttcaagggctc 745
|| |||| ||||||
Sbjct: 42125791 agtttcaggggctc 42125804
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 339 bits (171), Expect = 3e-090
Identities = 234/255 (91%)
Strand = Plus / Plus
Query: 1211 cagatcggccatcttgatgagcccctcgagcctggagtcattcttgatgttaaggcggtg 1270
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct: 42734066 cagatcggccatcttgatgaggccctcgagcctggagtcgttcttgatgttgaggcggtg 42734125
Query: 1271 gaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatc 1330
|||||||||||| || |||||| || || |||||||||||||||||||||||||| ||
Sbjct: 42734126 gaaggagatgcggccatggaggtggggaggggcggggtcgacgaggtggcggatcttgtc 42734185
Query: 1331 gcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagcttctcgcagag 1390
|||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 42734186 gcagtagacgtcgacggcgtagacgacgtgggcggtctcggccatgagcttctcgcagag 42734245
Query: 1391 gtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgacggagtt 1450
||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 42734246 gtgggagccgatgaagccgccggcgccgatcatgcagatggtgaggggcgcgatggggtt 42734305
Query: 1451 gccgtccagatccag 1465
|||||||||||||||
Sbjct: 42734306 gccgtccagatccag 42734320
Score = 170 bits (86), Expect = 2e-039
Identities = 104/110 (94%)
Strand = Plus / Plus
Query: 1009 ccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcgc 1068
|||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 42733691 ccttgcggagagggtggtcggtggggaggaagctgccgatggtcttgccgtagacctcgc 42733750
Query: 1069 acgtggagaagtggatgagacgcttgctgttctcggagcagtacttgacc 1118
|||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 42733751 acgtggagaagtggatgagacgcttgttgttctcagagcagtacttgacc 42733800
Score = 165 bits (83), Expect = 9e-038
Identities = 122/135 (90%)
Strand = Plus / Plus
Query: 761 gttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcgacaccaggaat 820
||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 42732383 gttactgaaacatgccaaaacccgaggaacaccctcactaggaccatcaacaccaggaat 42732442
Query: 821 gaaatccatccttggcccaatccaattaaaaggtctcacgattgtgaattcaaggccatt 880
|| ||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 42732443 aaagtccattcttggtccaatccaattgaaaggtctcacaattgtgaactcaaggccatt 42732502
Query: 881 ttctgcaccttcagc 895
|||||| ||||||||
Sbjct: 42732503 ttctgctccttcagc 42732517
Score = 143 bits (72), Expect = 3e-031
Identities = 120/136 (88%)
Strand = Plus / Plus
Query: 432 agctgcttgttgattatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcg 491
||||||||||||||||| |||||||| || |||||||| || |||||||| ||||||||
Sbjct: 42731793 agctgcttgttgattatggtcatgtcaggaatcctcttatcactatcatcatatccttca 42731852
Query: 492 ccgtagaactgactcgagctcacgtcaatcatgggctcatccagcggtgcctctcctgag 551
|| |||||||| |||| |||||||||||||| || |||||||| |||| ||||||||||
Sbjct: 42731853 ccatagaactgcttcgaactcacgtcaatcataggttcatccagtggtggctctcctgag 42731912
Query: 552 acatttgcgtagacct 567
|||||||| |||||||
Sbjct: 42731913 acatttgcatagacct 42731928
Score = 137 bits (69), Expect = 2e-029
Identities = 108/121 (89%)
Strand = Plus / Plus
Query: 313 tctaagtcgacgctgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgt 372
||||| |||||||||||||||| |||||||||||||| | |||||||||||| |||||||
Sbjct: 42731580 tctaactcgacgctgaagcctgtgacatttgccttttgatagcttctttgtaagtcttgt 42731639
Query: 373 gctgatacgtcagcgttgtctccagcagatccttgagaggcgtctttgggttccaaccta 432
|||| || |||| ||||||||||||| |||||||||||| ||||| || ||||||||||
Sbjct: 42731640 gctggtaggtcaatgttgtctccagcaaatccttgagaggggtcttcggattccaaccta 42731699
Query: 433 g 433
|
Sbjct: 42731700 g 42731700
Score = 127 bits (64), Expect = 2e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 1116 accactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtag 1175
||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 42733888 accacagggagcgcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttgtag 42733947
Query: 1176 tccgccggcgtgcagatagccgccaggttgat 1207
|| |||||||||||||| ||||||||||||||
Sbjct: 42733948 tcggccggcgtgcagatcgccgccaggttgat 42733979
Score = 123 bits (62), Expect = 3e-025
Identities = 98/110 (89%)
Strand = Plus / Plus
Query: 902 aagcctctcaataagttgcttcgcgcaagcataggaccatctttgtttcacgattggacc 961
||||||||||||||| |||||||| || ||||| ||||||| |||||||| ||||||||
Sbjct: 42732600 aagcctctcaataagctgcttcgcacatgcataagaccatcgctgtttcacaattggacc 42732659
Query: 962 aaaaatacagggcgactcatcttctttaagaacataaaattcaggttcct 1011
|||||| ||||| || ||||||||||| || |||||||||||||||||||
Sbjct: 42732660 aaaaatgcagggggattcatcttctttcagtacataaaattcaggttcct 42732709
Score = 101 bits (51), Expect = 1e-018
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 564 acctctgtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaaca 623
|||||||||||||||| ||||| | |||||| || ||||||||||| |||||||| |||
Sbjct: 42732004 acctctgtcatcatttcagccaattgcctaacagtgacttcattgttaggattcccgaca 42732063
Query: 624 ttgaagatgtggccattggctcgagcaggattttc 658
|||||||| || |||||||| ||||||||||||||
Sbjct: 42732064 ttgaagatttgaccattggcacgagcaggattttc 42732098
Score = 67.9 bits (34), Expect = 2e-008
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 672 acagcttcgatagcatccttgatgtagacaaaggttctctgagactgacccccatcaaca 731
|||||||| || |||||||| ||||| ||||| |||||||| ||||| || |||||||||
Sbjct: 42732202 acagcttcaatggcatccttaatgtaaacaaaagttctctgggactggccaccatcaaca 42732261
Query: 732 agcttcaagggctc 745
|| |||| ||||||
Sbjct: 42732262 agtttcaggggctc 42732275
>gb|CA999404.1|CA999404 S234H_C07 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 285
Score = 246 bits (124), Expect = 3e-062
Identities = 235/272 (86%)
Strand = Plus / Minus
Query: 474 ctatcatcgtatccttcgccgtagaactgactcgagctcacgtcaatcatgggctcatcc 533
|||||||| |||||||| || |||||||| |||| |||||||||||||| || ||||||
Sbjct: 281 ctatcatcatatccttcaccatagaactgcttcgaactcacgtcaatcataggttcatcc 222
Query: 534 agcggtgcctctcctgagacatttgcgtagacctctgtcatcatttgggccaactcccta 593
|| |||| |||||||||||||||||| ||||||||||||||||||| ||||| | ||||
Sbjct: 221 agtggtggctctcctgagacatttgcatagacctctgtcatcatttcagccaattgccta 162
Query: 594 acggtaacttcattgttcggattcccaacattgaagatgtggccattggctcgagcagga 653
|| || ||||||||||| |||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 161 acagtgacttcattgttaggattcccgacattgaagatttgaccattggcacgagcagga 102
Query: 654 ttttcaatcatcagcactacagcttcgatagcatccttgatgtagacaaaggttctctga 713
||||||||||||| |||||||| || |||||||| ||||| ||||| ||||||||
Sbjct: 101 ttttcaatcatcaagtgaacagcttcaatggcatccttaatgtaaacaaaagttctctgg 42
Query: 714 gactgacccccatcaacaagcttcaagggctc 745
||||| || ||||||||||| |||| ||||||
Sbjct: 41 gactggccaccatcaacaagtttcaggggctc 10
>gb|CF328962.1|CF328962 NACL--04-B17.g1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--04-B17, mRNA
sequence
Length = 268
Score = 232 bits (117), Expect = 5e-058
Identities = 162/177 (91%)
Strand = Plus / Minus
Query: 918 tgcttcgcgcaagcataggaccatctttgtttcacgattggaccaaaaatacagggcgac 977
|||||||| || ||||| ||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 181 tgcttcgcacatgcataagaccatcgctgtttcacaattggaccaaaaatgcagggggat 122
Query: 978 tcatcttctttaagaacataaaattcaggttccttgcggagcgggtggtctttggggagg 1037
||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 121 tcatcttctttcagtacataaaattcaggttccttgcggagagggtggtcggtggggagg 62
Query: 1038 aagctgccgatggtcttgccatagacctcgcacgtggagaagtggatgagacgcttg 1094
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagctgccgatggtcttgccgtagacctcgcacgtggagaagtggatgagacgcttg 5
>gb|AU161543.1|AU161543 AU161543 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S0612, mRNA sequence
Length = 312
Score = 230 bits (116), Expect = 2e-057
Identities = 151/163 (92%)
Strand = Plus / Minus
Query: 1302 gcggggtcgacgaggtggcggatcttatcgcagtatacgtcgacggcgaggacgacatgg 1361
|||| ||||||||||||||||||||| |||||||| |||||||||||| |||||| |||
Sbjct: 306 gcggngtcgacgaggtggcggatcttgtcgcagtagacgtcgacggcgtagacgacgtgg 247
Query: 1362 cgcgtctcggccatgagcttctcgcagaggtgggagccgatgaagccgccggcgccaatc 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 246 gcggtctcggccatgagcttctcgcagaggtgggagccgatgaagccgccggcgccgatc 187
Query: 1422 atgcagatggtgaggggcgcgacggagttgccgtccagatcca 1464
|||||||||||||||||||||| || |||||||||||||||||
Sbjct: 186 atgcagatggtgaggggcgcgatggggttgccgtccagatcca 144
>gb|D41064.1|D41064 RICS3328A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 380
Score = 194 bits (98), Expect = 1e-046
Identities = 136/150 (90%)
Strand = Plus / Minus
Query: 1313 gaggtggcggatcttatcgcagtatacgtcgacggcgaggacgacatggcgcgtctcggc 1372
||| ||||||||||| |||||||| ||||||||| || |||||| ||| ||||||||
Sbjct: 361 gagntggcggatcttgtcgcagtagacgtcgacgncgtagacgacgtggncggtctcggc 302
Query: 1373 catgagcttctcgcagaggtgggagccgatgaagccgccggcgccaatcatgcagatggt 1432
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 301 catgagcttctcgcagaggtgggagccgatgaagccgccggcgccgatcatgcagatggt 242
Query: 1433 gaggggcgcgacggagttgccgtccagatc 1462
||||| ||||| || |||||||||||||||
Sbjct: 241 gagggncgcgatggggttgccgtccagatc 212
>gb|D40622.1|D40622 RICS2706A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 354
Score = 180 bits (91), Expect = 2e-042
Identities = 130/143 (90%)
Strand = Plus / Minus
Query: 1320 cggatcttatcgcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagc 1379
|||||||| ||| |||| ||||||||| || |||||| ||| |||||||||||||||
Sbjct: 354 cggatcttgtcgaagtagacgtcgacgtcgtagacgacgtggacggtctcggccatgagc 295
Query: 1380 ttctcgcagaggtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggggc 1439
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 294 ttctcgcagaggtgggagccgatgaagccgccggcgccgatcatgcagatggtgaggggc 235
Query: 1440 gcgacggagttgccgtccagatc 1462
|||| || |||||||||||||||
Sbjct: 234 gcgatggggttgccgtccagatc 212
>gb|AU161544.1|AU161544 AU161544 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S0612, mRNA sequence
Length = 669
Score = 155 bits (78), Expect = 9e-035
Identities = 163/191 (85%), Gaps = 1/191 (0%)
Strand = Plus / Minus
Query: 313 tctaagtcgacgctgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgt 372
||||| |||||||||||||||| |||||||||||||| | |||||||||||| |||||||
Sbjct: 192 tctaactcgacgctgaagcctgtgacatttgccttttgatagcttctttgtaagtcttgt 133
Query: 373 gctgatacgtcagcgttgtctccagcagatccttgagaggcgtctttgggttccaaccta 432
|||| || |||| ||||||||||||| || | ||||||| ||||| || |||||||| |
Sbjct: 132 gctggtaggtcaatgttgtctccagcaaatncntgagaggggtcttcggattccaaccaa 73
Query: 433 gctgcttgttgattat-agtcatgtcggggatcctcttgtcgctatcatcgtatccttcg 491
|||||||||||| ||| |||||||| || |||||| | || ||| |||| ||||||||
Sbjct: 72 gctgcttgttgaatatgggtcatgtcaggaatcctcctatcactancatcatatccttca 13
Query: 492 ccgtagaactg 502
|| ||||||||
Sbjct: 12 ccatagaactg 2
>gb|CF328961.1|CF328961 NACL--04-B17.b1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--04-B17, mRNA
sequence
Length = 259
Score = 125 bits (63), Expect = 8e-026
Identities = 154/183 (84%), Gaps = 1/183 (0%)
Strand = Plus / Plus
Query: 918 tgcttcgcgcaagcataggaccatctttgtttcacgattggacca-aaaatacagggcga 976
|||||||| || ||||| |||||| |||||||| ||||||||| ||||| ||||| ||
Sbjct: 49 tgcttcgcacatgcataaaaccatcgctgtttcacaattggaccacaaaatgcaggggga 108
Query: 977 ctcatcttctttaagaacataaaattcaggttccttgcggagcgggtggtctttggggag 1036
||||||||||| | ||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 109 ttcatcttctttcaatacataaaattcaggttccttgcggaaagggtggtcggtggggaa 168
Query: 1037 gaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatgagacgcttgct 1096
||| ||||| ||||||||||| || ||||| |||||||| || ||||||| || |||| |
Sbjct: 169 gaaactgcccatggtcttgccgtaaacctcccacgtggaaaaatggatgaaacccttggt 228
Query: 1097 gtt 1099
|||
Sbjct: 229 gtt 231
>gb|AU101957.1|AU101957 AU101957 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2706, mRNA sequence
Length = 464
Score = 109 bits (55), Expect = 5e-021
Identities = 85/95 (89%)
Strand = Plus / Minus
Query: 313 tctaagtcgacgctgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgt 372
||||| |||||||||||||||| |||||||||||||| | |||||||||||| |||||||
Sbjct: 108 tctaactcgacgctgaagcctgtgacatttgccttttgatagcttctttgtaagtcttgt 49
Query: 373 gctgatacgtcagcgttgtctccagcagatccttg 407
|||| || |||| ||||||||||||| |||||||
Sbjct: 48 gctggtaggtcaatgttgtctccagcaaatccttg 14
>gb|AC123974.6| Oryza sativa chromosome 3 BAC OSJNBb0021P10 genomic sequence, complete
sequence
Length = 136982
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1030 tggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggat 1084
||||||||||||||||||| |||| || |||| ||| || ||||||||||||||
Sbjct: 23211 tggggaggaagctgccgattgtctggcagtagagctcacatgtggagaagtggat 23157
>gb|AACV01007699.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007699, whole
genome shotgun sequence
Length = 18928
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1030 tggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggat 1084
||||||||||||||||||| |||| || |||| ||| || ||||||||||||||
Sbjct: 18048 tggggaggaagctgccgattgtctggcagtagagctcacatgtggagaagtggat 17994
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1030 tggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggat 1084
||||||||||||||||||| |||| || |||| ||| || ||||||||||||||
Sbjct: 883234 tggggaggaagctgccgattgtctggcagtagagctcacatgtggagaagtggat 883180
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1030 tggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggat 1084
||||||||||||||||||| |||| || |||| ||| || ||||||||||||||
Sbjct: 1326456 tggggaggaagctgccgattgtctggcagtagagctcacatgtggagaagtggat 1326402
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1030 tggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggat 1084
||||||||||||||||||| |||| || |||| ||| || ||||||||||||||
Sbjct: 28592619 tggggaggaagctgccgattgtctggcagtagagctcacatgtggagaagtggat 28592565
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1030 tggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggat 1084
||||||||||||||||||| |||| || |||| ||| || ||||||||||||||
Sbjct: 27672837 tggggaggaagctgccgattgtctggcagtagagctcacatgtggagaagtggat 27672783
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1030 tggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggat 1084
||||||||||||||||||| |||| || |||| ||| || ||||||||||||||
Sbjct: 27581514 tggggaggaagctgccgattgtctggcagtagagctcacatgtggagaagtggat 27581460
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,341,481
Number of Sequences: 438736
Number of extensions: 2341481
Number of successful extensions: 14301
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14020
Number of HSP's gapped (non-prelim): 278
length of query: 1644
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1622
effective length of database: 2,790,767,724
effective search space: 4526625248328
effective search space used: 4526625248328
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)