BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.1
(932 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_467013.1| Oryza sativa (japonica cultivar-group), mRNA 573 e-161
dbj|AK102431.1| Oryza sativa (japonica cultivar-group) cDNA... 557 e-156
gb|CB663561.1|CB663561 OSJNEd08L01.r OSJNEd Oryza sativa (j... 484 e-134
gb|CB646111.1|CB646111 OSJNEb08F02.r OSJNEb Oryza sativa (j... 458 e-126
dbj|AK108550.1| Oryza sativa (japonica cultivar-group) cDNA... 418 e-114
gb|CF323675.1|CF323675 HDN--04-H15.g1 OsHDAC1-overexpressin... 379 e-102
ref|XM_473336.1| Oryza sativa (japonica cultivar-group), p... 333 1e-088
gb|C27395.1|C27395 C27395 Rice callus cDNA Oryza sativa (ja... 287 5e-075
dbj|AP005291.3| Oryza sativa (japonica cultivar-group) geno... 246 2e-062
gb|AACV01005016.1| Oryza sativa (japonica cultivar-group) c... 246 2e-062
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 246 2e-062
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 246 2e-062
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 246 2e-062
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 246 2e-062
dbj|AG208077.1| Oryza sativa (japonica cultivar-group) DNA,... 167 1e-038
gb|C26452.1|C26452 C26452 Rice callus cDNA Oryza sativa (ja... 167 1e-038
gb|AACV01010199.1| Oryza sativa (japonica cultivar-group) c... 167 1e-038
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 167 1e-038
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 167 1e-038
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 167 1e-038
emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromoso... 167 1e-038
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 167 1e-038
gb|AQ271754.1|AQ271754 nbxb0026L09r CUGI Rice BAC Library O... 159 3e-036
dbj|AK059659.1| Oryza sativa (japonica cultivar-group) cDNA... 103 2e-019
gb|AU092316.2|AU092316 AU092316 Rice callus Oryza sativa (j... 94 2e-016
dbj|AK108496.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.034
>ref|XM_467013.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2113
Score = 573 bits (289), Expect = e-161
Identities = 614/722 (85%), Gaps = 1/722 (0%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
||||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||
Sbjct: 1854 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 1795
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgtcgca 319
|||| || |||||||| | || || ||||||||||| ||||| | || ||||||||||
Sbjct: 1794 tcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgca 1735
Query: 320 tgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtcttt 379
|||| || || |||||||| |||||||||||||| || |||||||| |||||||||| ||
Sbjct: 1734 tgatgggatctgtaagaatattctggatctctggatcctgcatagccttgttctgtcgtt 1675
Query: 380 cttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacc 439
| || | || ||||| | | ||||| ||||||||||||||||||||||| | |||||
Sbjct: 1674 cctgaatctcttcctgagtcaaatcacccctgttggccttgttgatctgttcgatacacc 1615
Query: 440 tcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtagg 499
| || ||||| || ||||||||| |||| ||||| ||||||||||| || |||||||| |
Sbjct: 1614 ttttcacaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaag 1555
Query: 500 tttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtatacc 559
|||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 1554 tttccattgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtatacc 1495
Query: 560 ctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggca 619
|||||| ||||||||| || ||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 1494 ctttggagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggca 1435
Query: 620 tggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggt 679
||||||| |||||||||||||| || ||||||||||| || ||| | || ||||| || |
Sbjct: 1434 tggctcccaacttggtgtagcatgcagccctattgctgtacaccttcgggtccttaggat 1375
Query: 680 ttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaaga 739
||||| ||| |||||| ||||| || |||| || ||||| ||||||||||||||||| |
Sbjct: 1374 ttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgctccttgaaaa 1315
Query: 740 actcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttgttgct 799
|| || |||||||||||||| |||||||| || ||||||||||| ||||||||||||
Sbjct: 1314 gctgattacctttctctctctcttcatctgctaactttggatcatagtactcttgttgct 1255
Query: 800 ctaactctttctttgctttctcagcctcanttaactttttaagagtttctgggttccgat 859
| |||||||||||||| ||||||||||| ||| |||||| ||||| ||||| |||||||
Sbjct: 1254 ccaactctttctttgccctctcagcctcatttagcttttttagagtgtctggattccgat 1195
Query: 860 gcncagtcagagccttctgggaggnctcgatagcaatatca-aatccttagagggcttag 918
|| |||| |||||||||||| | | ||| || ||||| ||| | |||||||||| |||||
Sbjct: 1194 gctcagttagagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttag 1135
Query: 919 ca 920
||
Sbjct: 1134 ca 1133
>dbj|AK102431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093H17, full
insert sequence
Length = 2113
Score = 557 bits (281), Expect = e-156
Identities = 612/722 (84%), Gaps = 1/722 (0%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
||||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||
Sbjct: 1854 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 1795
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgtcgca 319
|||| || |||||||| | || || ||||||||||| ||||| | || ||||||||||
Sbjct: 1794 tcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgca 1735
Query: 320 tgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtcttt 379
|||| || || |||||||| |||||||||||||| || |||||||| |||||||||| ||
Sbjct: 1734 tgatgggatctgtaagaatattctggatctctggatcctgcatagccttgttctgtcgtt 1675
Query: 380 cttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacc 439
| || | || ||||| | | ||||| ||||||||||||||||||||||| | |||||
Sbjct: 1674 cctgaatctcttcctgagtcaaatcacccctgttggccttgttgatctgttcgatacacc 1615
Query: 440 tcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtagg 499
| || ||||| || ||||||||| |||| ||||| |||||||||| || |||||||| |
Sbjct: 1614 ttttcacaccgtccagcagttccgggttattcggaccatgcttcaaaccggcctggtaag 1555
Query: 500 tttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtatacc 559
|||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 1554 tttccattgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtatacc 1495
Query: 560 ctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggca 619
|||||| ||||||||| || ||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 1494 ctttggagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggca 1435
Query: 620 tggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggt 679
||||||| |||||||||||||| || ||||||||||| || ||| | || ||||| || |
Sbjct: 1434 tggctcccaacttggtgtagcatgcagccctattgctgtacaccttcgggtccttaggat 1375
Query: 680 ttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaaga 739
||||| || |||||| ||||| || |||| || ||||| ||||||||||||||||| |
Sbjct: 1374 ttctcccgatagcctcagtgtaatgctttaccgcgtctggatatttttgctccttgaaaa 1315
Query: 740 actcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttgttgct 799
|| || |||||||||||||| |||||||| || ||||||||||| ||||||||||||
Sbjct: 1314 gctgattacctttctctctctcttcatctgctaactttggatcatagtactcttgttgct 1255
Query: 800 ctaactctttctttgctttctcagcctcanttaactttttaagagtttctgggttccgat 859
| |||||||||||||| ||||||||||| ||| |||||| ||||| ||||| |||||||
Sbjct: 1254 ccaactctttctttgccctctcagcctcatttagcttttttagagtgtctggattccgat 1195
Query: 860 gcncagtcagagccttctgggaggnctcgatagcaatatca-aatccttagagggcttag 918
|| |||| |||||||||||| | | ||| || ||||| ||| | |||||||||| |||||
Sbjct: 1194 gctcagttagagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttag 1135
Query: 919 ca 920
||
Sbjct: 1134 ca 1133
>gb|CB663561.1|CB663561 OSJNEd08L01.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08L01 3', mRNA sequence
Length = 746
Score = 484 bits (244), Expect = e-134
Identities = 523/616 (84%)
Strand = Plus / Plus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
||||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||
Sbjct: 126 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 185
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgtcgca 319
|||| || |||||||| || || ||||||||||| ||||| | || ||||||||||
Sbjct: 186 tcttaagatgctcctgaaaagccctagggttctcctgcaaatcgaccagtacctgtcgca 245
Query: 320 tgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtcttt 379
|||| || || |||| ||| |||||||||||||| || |||||||| |||||||||| ||
Sbjct: 246 tgatgggatctgtaaaaatattctggatctctggatcctgcatagccttgttctgtcgtt 305
Query: 380 cttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacc 439
| || | || ||||| | | ||||| ||||||||||||||||||||||| | |||||
Sbjct: 306 cctgaatctcttcctgagtcaaatcacccctgttggccttgttgatctgttcgatacacc 365
Query: 440 tcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtagg 499
| || ||||| || ||||||||| |||| ||||| ||||||||||| || |||||| | |
Sbjct: 366 ttttcacaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggaaag 425
Query: 500 tttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtatacc 559
|||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 426 tttccattgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtatacc 485
Query: 560 ctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggca 619
|||||| ||||||||| || ||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 486 ctttggagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggca 545
Query: 620 tggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggt 679
||||||| |||||||||||||| || ||||||||||| || ||| | || ||||| || |
Sbjct: 546 tggctcccaacttggtgtagcatgcagccctattgctgtacaccttcgggtccttaggat 605
Query: 680 ttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaaga 739
||||| ||| |||||| ||||| || |||| || ||||| ||||||||||||||||| |
Sbjct: 606 ttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgctccttgaaaa 665
Query: 740 actcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttgttgct 799
|| || |||||||||||||| |||||||| || ||||||||||| ||||||||||||
Sbjct: 666 gctgattacctttctctctctcttcatctgctaactttggatcatagtactcttgttgct 725
Query: 800 ctaactctttctttgc 815
| ||||||||||||||
Sbjct: 726 ccaactctttctttgc 741
>gb|CB646111.1|CB646111 OSJNEb08F02.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08F02 3', mRNA sequence
Length = 847
Score = 458 bits (231), Expect = e-126
Identities = 495/583 (84%)
Strand = Plus / Plus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
||||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||
Sbjct: 265 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 324
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgtcgca 319
|||| || |||||||| | || || ||||||||||| ||||| | || ||||||||||
Sbjct: 325 tcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgca 384
Query: 320 tgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtcttt 379
|||| || || |||||||| |||||||||||||| || |||||||| |||||||||| ||
Sbjct: 385 tgatgggatctgtaagaatattctggatctctggatcctgcatagccttgttctgtcgtt 444
Query: 380 cttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacc 439
| || | || ||||| | | ||||| ||||||||||||||||||||||| | |||||
Sbjct: 445 cctgaatctcttcctgagtcaaatcacccctgttggccttgttgatctgttcgatacacc 504
Query: 440 tcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtagg 499
| || ||||| || ||||||||| |||| ||||| ||||||||||| || |||||||| |
Sbjct: 505 ttttcacaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaag 564
Query: 500 tttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtatacc 559
|||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 565 tttccattgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtatacc 624
Query: 560 ctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggca 619
|||||| ||||||||| || ||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 625 ctttggagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggca 684
Query: 620 tggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggt 679
||||||| |||||||||||||| || ||||||||||| || ||| | || ||||| || |
Sbjct: 685 tggctcccaacttggtgtagcatgcagccctattgctgtacaccttcgggtccttaggat 744
Query: 680 ttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaaga 739
||||| ||| |||||| ||||| || |||| || ||||| ||||||||||||||||| |
Sbjct: 745 ttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgctccttgaaaa 804
Query: 740 actcgttgcctttctctctctcctcatctgccaattttggatc 782
|| | |||||||||||||| |||||||| || ||||||||
Sbjct: 805 gctgaatacctttctctctctcttcatctgctaactttggatc 847
>dbj|AK108550.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E04, full
insert sequence
Length = 1963
Score = 418 bits (211), Expect = e-114
Identities = 551/665 (82%)
Strand = Plus / Minus
Query: 211 actatcccagcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgc 270
|||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 1811 actatccctgcacttactagcttctggatcttctgcatcactccggggttcttgagatgc 1752
Query: 271 tcctgggccgcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcg 330
|||| || || | || ||||||||||| || | | ||||| |||||||||| ||
Sbjct: 1751 gcctgagcagccttcggattctcctggaagtcggtcaacacctgctgcatgataggatcc 1692
Query: 331 gtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcg 390
| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct: 1691 ttcagaatgttctggatttctgggtcctgcatagccttgttctgtctttcttgcaattcc 1632
Query: 391 tcctggcttatttcacctctgttggccttgttgatctgttcaacacacctcttaacacca 450
|||||||| | ||| |||||| | |||||||||||| | | ||||| ||| ||||||||
Sbjct: 1631 tcctggctcagttcccctctgctagccttgttgatccgctggacacatctcctaacacca 1572
Query: 451 tcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggcc 510
||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||| ||
Sbjct: 1571 tcaagcaactcctggttgttcgggtcatgctttaagccggcctgataggtttccagtgct 1512
Query: 511 ttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttggtgaag 570
|||||||||||||||||||| || || |||||||||||||| || || || |||| |||
Sbjct: 1511 ttgtcatattctttcatgaaaaattggattgcacctttccttgtgtatcccttggagaat 1452
Query: 571 gtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggctcctaac 630
|| || || ||||||| || ||||| || ||||| |||||||||||||| ||||| | |
Sbjct: 1451 gtaggatctagttcaatgcatttttcagcatctttgagaccttcaggcattgctccaagc 1392
Query: 631 ttggtgtagcaggcggccctattgctataaaccctaggatccttcgggtttctcttgaga 690
||||| || ||||||||||| ||||| || ||||| |||||||| ||||||||| |||||
Sbjct: 1391 ttggtataacaggcggccctgttgctgtatacccttggatccttggggtttctcctgaga 1332
Query: 691 gcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgttgcct 750
|| || |||| || || | ||||||||||||||| |||| ||||||||| || || |||
Sbjct: 1331 gcttcactgtaatgcttcactgcttctgggtatttctgctgcttgaagaattcattacct 1272
Query: 751 ttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactctttc 810
||||||| ||||||||| || | |||||||||||| ||||||| ||||||| ||| |||
Sbjct: 1271 ttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctccttc 1212
Query: 811 tttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtcaga 870
|||||| | ||||| ||| | | || || || || |||||||| | ||| ||||||||
Sbjct: 1211 tttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtcaga 1152
Query: 871 gcctt 875
|||||
Sbjct: 1151 gcctt 1147
>gb|CF323675.1|CF323675 HDN--04-H15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-H15, mRNA sequence
Length = 516
Score = 379 bits (191), Expect = e-102
Identities = 399/467 (85%), Gaps = 3/467 (0%)
Strand = Plus / Minus
Query: 457 agttcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtca 516
|||||| |||| ||||| ||||||||||| || |||||||| ||||||| |||||||||
Sbjct: 516 agttccgggttattcggatcatgcttcaaaccggcctggtaagtttccattgccttgtca 457
Query: 517 tattctttcatgaagaactgaattgcaccttt--cctcgtataccctttggtgaaggtgg 574
|||||||||||||| |||||||||||||| || ||| ||||||||||||| ||||||||
Sbjct: 456 tattctttcatgaaaaactgaattgcaccctttcccttgtataccctttggagaaggtgg 397
Query: 575 ggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggctcctaacttgg 634
| || ||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct: 396 gatctagttcaatgcacttctctgcatctttaagaccttcaggcatggctcccaacttgg 337
Query: 635 tgtagcaggcggccctattgctataaaccctaggatccttcgggtttctcttgagagcct 694
||||||| || ||||||||||| || ||| | || ||||| || |||||| ||| |||||
Sbjct: 336 tgtagcatgcagccctattgctgtacaccttcgggtccttaggatttctcctgatagcct 277
Query: 695 ccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgttgcctttct 754
| ||||| || |||| || ||||| ||||||||||||||||| | || || |||||||
Sbjct: 276 cagtgtaatgctttaccgcgtctggatatttttgctccttgaaaagctgattacctttct 217
Query: 755 ctctctcctcatctgccaattttggatcataaaactcttgttgctctaactctttctttg 814
||||||| |||||||| || ||||||||||| ||||||||||||| |||||||||||||
Sbjct: 216 ctctctcttcatctgctaactttggatcatagtactcttgttgctccaactctttctttg 157
Query: 815 ctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtcagagcct 874
| ||||||||||| ||| |||||| ||||| ||||| ||||||||| |||| |||||||
Sbjct: 156 ccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagttagagcct 97
Query: 875 tctgggaggnctcgatagcaatatca-aatccttagagggcttagca 920
||||| | | ||| || ||||| ||| | |||||||||| |||||||
Sbjct: 96 tctggaaagtctcaatggcaatgtcatagtccttagaggtcttagca 50
>ref|XM_473336.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2241
Score = 333 bits (168), Expect = 1e-088
Identities = 426/512 (83%)
Strand = Plus / Minus
Query: 229 agcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggccgcacttggg 288
|||||||| ||||||||||| || ||||||||||| || ||| |||| || || | ||
Sbjct: 2228 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 2169
Query: 289 ttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatgttctggatc 348
||||||||||| || | | ||||| |||||||||| || | ||||||||||||||
Sbjct: 2168 ttctcctggaagtcggtcaacacctgctgcatgataggatccttcagaatgttctggatt 2109
Query: 349 tctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggcttatttcacct 408
|||||||| |||||||| ||||||||||||||||||||||| |||||||| | ||| |||
Sbjct: 2108 tctgggtcctgcatagccttgttctgtctttcttgcaattcctcctggctcagttcccct 2049
Query: 409 ctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttg 468
||| | |||||||||||| | | ||||| ||| ||||||||||||||| |||||||||
Sbjct: 2048 ctgctagccttgttgatccgctggacacatctcctaacaccatcaagcaactcctggttg 1989
Query: 469 ttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttcatg 528
|||||||||||||| | ||| ||||| |||||||||| || ||||||||||||||||||
Sbjct: 1988 ttcgggtcatgctttaggccggcctgataggtttccagtgctttgtcatattctttcatg 1929
Query: 529 aagaactgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttcaaga 588
|| || || |||||||||||||| || || || |||| ||| || || || |||||||
Sbjct: 1928 aaaaattggattgcacctttccttgtgtatcccttggagaatgtaggatctagttcaatg 1869
Query: 589 cacttttctgcgtctttaagaccttcaggcatggctcctaacttggtgtagcaggcggcc 648
|| ||||| || ||||| |||||||||||||| ||||| | |||||| || |||||||||
Sbjct: 1868 catttttcagcatctttgagaccttcaggcattgctccaagcttggtataacaggcggcc 1809
Query: 649 ctattgctataaaccctaggatccttcgggtttctcttgagagcctccgtgtagtgtttt 708
|| ||||| || ||||| |||||||| ||||||||| ||||||| || |||| || ||
Sbjct: 1808 ctgttgctgtatacccttggatccttggggtttctcctgagagcttcactgtaatgcttc 1749
Query: 709 attgcttctgggtatttttgctccttgaagaa 740
| ||||||||||||||| |||| |||||||||
Sbjct: 1748 actgcttctgggtatttctgctgcttgaagaa 1717
Score = 67.9 bits (34), Expect = 9e-009
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||||| ||||||||| || | |||||||||||| ||||||| ||||||| |||
Sbjct: 1664 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 1605
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
||||||||| | ||||| ||| | | || || || || |||||||| | ||| |||||
Sbjct: 1604 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 1545
Query: 868 agagcctt 875
||||||||
Sbjct: 1544 agagcctt 1537
>gb|C27395.1|C27395 C27395 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C51776_1A, mRNA sequence
Length = 382
Score = 287 bits (145), Expect = 5e-075
Identities = 260/299 (86%)
Strand = Plus / Plus
Query: 403 tcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagttcc 462
||||| ||||||||||||||||||||||| | |||||| || ||||| || |||||||||
Sbjct: 39 tcacccctgttggccttgttgatctgttcgatacaccttttcacaccgtccagcagttcc 98
Query: 463 tggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatattct 522
|||| ||||| ||||||||||| || |||||||| ||||||| |||||||||||||||
Sbjct: 99 gggttattcggatcatgcttcaaaccggcctggtaagtttccattgccttgtcatattct 158
Query: 523 ttcatgaagaactgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagt 582
||||||| |||||||||||||||||||| ||||||||||||| ||||||||| || |||
Sbjct: 159 ntcatgaaaaactgaattgcacctttccttgtataccctttggagaaggtgggatctagt 218
Query: 583 tcaagacacttttctgcgtctttaagaccttcaggcatggctcctaacttggtgtagcag 642
|||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 219 tcaatgcacttctctgcatctttaagaccttcaggcatggctcccaacttggtgtagcat 278
Query: 643 gcggccctattgctataaaccctaggatccttcgggtttctcttgagagcctccgtgta 701
|| ||||||||||| || | | | || ||||| || |||||| ||| |||||| |||||
Sbjct: 279 gcagccctattgctgtacancttcgggtccttaggatttctcctgatagcctcagtgta 337
>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_H11
Length = 143314
Score = 246 bits (124), Expect = 2e-062
Identities = 190/212 (89%)
Strand = Plus / Minus
Query: 445 acaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttcc 504
||||| || ||||||||| |||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 68825 acaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttcc 68766
Query: 505 acggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttg 564
| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 68765 attgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtataccctttg 68706
Query: 565 gtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggct 624
| ||||||||| || ||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct: 68705 gagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggcatggct 68646
Query: 625 cctaacttggtgtagcaggcggccctattgct 656
|| |||||||||||||| || |||||||||||
Sbjct: 68645 cccaacttggtgtagcatgcagccctattgct 68614
Score = 153 bits (77), Expect = 2e-034
Identities = 150/174 (86%), Gaps = 1/174 (0%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||||||||| |||||||| || ||||||||||| ||||||||||||| ||||||
Sbjct: 68041 cctttctctctctcttcatctgctaactttggatcatagtactcttgttgctccaactct 67982
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
|||||||| ||||||||||| ||| |||||| ||||| ||||| ||||||||| ||||
Sbjct: 67981 ttctttgccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagtt 67922
Query: 868 agagccttctgggaggnctcgatagcaatatca-aatccttagagggcttagca 920
|||||||||||| | | ||| || ||||| ||| | |||||||||| |||||||
Sbjct: 67921 agagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttagca 67868
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
||||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||
Sbjct: 69447 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 69388
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaaatc 302
|||| || |||||||| | || || ||||||||||| |||||
Sbjct: 69387 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 69345
Score = 71.9 bits (36), Expect = 6e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 310 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 369
|||||||||||||| || || |||||||| |||||||||||||| || |||||||| |||
Sbjct: 69232 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagccttg 69173
Query: 370 ttct 373
||||
Sbjct: 69172 ttct 69169
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 403 tcacctctgttggccttgttgatctgttcaacacacct 440
||||| ||||||||||||||||||||||| | ||||||
Sbjct: 69050 tcacccctgttggccttgttgatctgttcgatacacct 69013
Score = 48.1 bits (24), Expect = 0.009
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 670 tccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 729
||||| || |||||| ||| |||||| ||||| || |||| || ||||| |||||||||
Sbjct: 68283 tccttaggatttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgc 68224
Query: 730 tccttgaa 737
||||||||
Sbjct: 68223 tccttgaa 68216
>gb|AACV01005016.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005016, whole
genome shotgun sequence
Length = 29067
Score = 246 bits (124), Expect = 2e-062
Identities = 190/212 (89%)
Strand = Plus / Minus
Query: 445 acaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttcc 504
||||| || ||||||||| |||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 23047 acaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttcc 22988
Query: 505 acggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttg 564
| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 22987 attgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtataccctttg 22928
Query: 565 gtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggct 624
| ||||||||| || ||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct: 22927 gagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggcatggct 22868
Query: 625 cctaacttggtgtagcaggcggccctattgct 656
|| |||||||||||||| || |||||||||||
Sbjct: 22867 cccaacttggtgtagcatgcagccctattgct 22836
Score = 153 bits (77), Expect = 2e-034
Identities = 150/174 (86%), Gaps = 1/174 (0%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||||||||| |||||||| || ||||||||||| ||||||||||||| ||||||
Sbjct: 22263 cctttctctctctcttcatctgctaactttggatcatagtactcttgttgctccaactct 22204
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
|||||||| ||||||||||| ||| |||||| ||||| ||||| ||||||||| ||||
Sbjct: 22203 ttctttgccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagtt 22144
Query: 868 agagccttctgggaggnctcgatagcaatatca-aatccttagagggcttagca 920
|||||||||||| | | ||| || ||||| ||| | |||||||||| |||||||
Sbjct: 22143 agagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttagca 22090
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
||||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||
Sbjct: 23669 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 23610
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaaatc 302
|||| || |||||||| | || || ||||||||||| |||||
Sbjct: 23609 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 23567
Score = 71.9 bits (36), Expect = 6e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 310 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 369
|||||||||||||| || || |||||||| |||||||||||||| || |||||||| |||
Sbjct: 23454 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagccttg 23395
Query: 370 ttct 373
||||
Sbjct: 23394 ttct 23391
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 403 tcacctctgttggccttgttgatctgttcaacacacct 440
||||| ||||||||||||||||||||||| | ||||||
Sbjct: 23272 tcacccctgttggccttgttgatctgttcgatacacct 23235
Score = 48.1 bits (24), Expect = 0.009
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 670 tccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 729
||||| || |||||| ||| |||||| ||||| || |||| || ||||| |||||||||
Sbjct: 22505 tccttaggatttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgc 22446
Query: 730 tccttgaa 737
||||||||
Sbjct: 22445 tccttgaa 22438
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 246 bits (124), Expect = 2e-062
Identities = 190/212 (89%)
Strand = Plus / Minus
Query: 445 acaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttcc 504
||||| || ||||||||| |||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 1082483 acaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttcc 1082424
Query: 505 acggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttg 564
| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 1082423 attgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtataccctttg 1082364
Query: 565 gtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggct 624
| ||||||||| || ||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct: 1082363 gagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggcatggct 1082304
Query: 625 cctaacttggtgtagcaggcggccctattgct 656
|| |||||||||||||| || |||||||||||
Sbjct: 1082303 cccaacttggtgtagcatgcagccctattgct 1082272
Score = 153 bits (77), Expect = 2e-034
Identities = 150/174 (86%), Gaps = 1/174 (0%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||||||||| |||||||| || ||||||||||| ||||||||||||| ||||||
Sbjct: 1081699 cctttctctctctcttcatctgctaactttggatcatagtactcttgttgctccaactct 1081640
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
|||||||| ||||||||||| ||| |||||| ||||| ||||| ||||||||| ||||
Sbjct: 1081639 ttctttgccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagtt 1081580
Query: 868 agagccttctgggaggnctcgatagcaatatca-aatccttagagggcttagca 920
|||||||||||| | | ||| || ||||| ||| | |||||||||| |||||||
Sbjct: 1081579 agagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttagca 1081526
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
||||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||
Sbjct: 1083105 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 1083046
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaaatc 302
|||| || |||||||| | || || ||||||||||| |||||
Sbjct: 1083045 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 1083003
Score = 71.9 bits (36), Expect = 6e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 310 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 369
|||||||||||||| || || |||||||| |||||||||||||| || |||||||| |||
Sbjct: 1082890 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagccttg 1082831
Query: 370 ttct 373
||||
Sbjct: 1082830 ttct 1082827
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 403 tcacctctgttggccttgttgatctgttcaacacacct 440
||||| ||||||||||||||||||||||| | ||||||
Sbjct: 1082708 tcacccctgttggccttgttgatctgttcgatacacct 1082671
Score = 48.1 bits (24), Expect = 0.009
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 670 tccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 729
||||| || |||||| ||| |||||| ||||| || |||| || ||||| |||||||||
Sbjct: 1081941 tccttaggatttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgc 1081882
Query: 730 tccttgaa 737
||||||||
Sbjct: 1081881 tccttgaa 1081874
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 246 bits (124), Expect = 2e-062
Identities = 190/212 (89%)
Strand = Plus / Minus
Query: 445 acaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttcc 504
||||| || ||||||||| |||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 12295412 acaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttcc 12295353
Query: 505 acggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttg 564
| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 12295352 attgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtataccctttg 12295293
Query: 565 gtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggct 624
| ||||||||| || ||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct: 12295292 gagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggcatggct 12295233
Query: 625 cctaacttggtgtagcaggcggccctattgct 656
|| |||||||||||||| || |||||||||||
Sbjct: 12295232 cccaacttggtgtagcatgcagccctattgct 12295201
Score = 153 bits (77), Expect = 2e-034
Identities = 150/174 (86%), Gaps = 1/174 (0%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||||||||| |||||||| || ||||||||||| ||||||||||||| ||||||
Sbjct: 12294628 cctttctctctctcttcatctgctaactttggatcatagtactcttgttgctccaactct 12294569
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
|||||||| ||||||||||| ||| |||||| ||||| ||||| ||||||||| ||||
Sbjct: 12294568 ttctttgccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagtt 12294509
Query: 868 agagccttctgggaggnctcgatagcaatatca-aatccttagagggcttagca 920
|||||||||||| | | ||| || ||||| ||| | |||||||||| |||||||
Sbjct: 12294508 agagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttagca 12294455
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
||||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||
Sbjct: 12296034 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 12295975
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaaatc 302
|||| || |||||||| | || || ||||||||||| |||||
Sbjct: 12295974 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 12295932
Score = 71.9 bits (36), Expect = 6e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 310 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 369
|||||||||||||| || || |||||||| |||||||||||||| || |||||||| |||
Sbjct: 12295819 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagccttg 12295760
Query: 370 ttct 373
||||
Sbjct: 12295759 ttct 12295756
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 403 tcacctctgttggccttgttgatctgttcaacacacct 440
||||| ||||||||||||||||||||||| | ||||||
Sbjct: 12295637 tcacccctgttggccttgttgatctgttcgatacacct 12295600
Score = 48.1 bits (24), Expect = 0.009
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 670 tccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 729
||||| || |||||| ||| |||||| ||||| || |||| || ||||| |||||||||
Sbjct: 12294870 tccttaggatttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgc 12294811
Query: 730 tccttgaa 737
||||||||
Sbjct: 12294810 tccttgaa 12294803
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 246 bits (124), Expect = 2e-062
Identities = 190/212 (89%)
Strand = Plus / Minus
Query: 445 acaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttcc 504
||||| || ||||||||| |||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 25748476 acaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttcc 25748417
Query: 505 acggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttg 564
| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 25748416 attgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtataccctttg 25748357
Query: 565 gtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggct 624
| ||||||||| || ||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct: 25748356 gagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggcatggct 25748297
Query: 625 cctaacttggtgtagcaggcggccctattgct 656
|| |||||||||||||| || |||||||||||
Sbjct: 25748296 cccaacttggtgtagcatgcagccctattgct 25748265
Score = 153 bits (77), Expect = 2e-034
Identities = 150/174 (86%), Gaps = 1/174 (0%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||||||||| |||||||| || ||||||||||| ||||||||||||| ||||||
Sbjct: 25747692 cctttctctctctcttcatctgctaactttggatcatagtactcttgttgctccaactct 25747633
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
|||||||| ||||||||||| ||| |||||| ||||| ||||| ||||||||| ||||
Sbjct: 25747632 ttctttgccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagtt 25747573
Query: 868 agagccttctgggaggnctcgatagcaatatca-aatccttagagggcttagca 920
|||||||||||| | | ||| || ||||| ||| | |||||||||| |||||||
Sbjct: 25747572 agagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttagca 25747519
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
||||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||
Sbjct: 25749098 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 25749039
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaaatc 302
|||| || |||||||| | || || ||||||||||| |||||
Sbjct: 25749038 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 25748996
Score = 71.9 bits (36), Expect = 6e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 310 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 369
|||||||||||||| || || |||||||| |||||||||||||| || |||||||| |||
Sbjct: 25748883 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagccttg 25748824
Query: 370 ttct 373
||||
Sbjct: 25748823 ttct 25748820
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 403 tcacctctgttggccttgttgatctgttcaacacacct 440
||||| ||||||||||||||||||||||| | ||||||
Sbjct: 25748701 tcacccctgttggccttgttgatctgttcgatacacct 25748664
Score = 48.1 bits (24), Expect = 0.009
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 670 tccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 729
||||| || |||||| ||| |||||| ||||| || |||| || ||||| |||||||||
Sbjct: 25747934 tccttaggatttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgc 25747875
Query: 730 tccttgaa 737
||||||||
Sbjct: 25747874 tccttgaa 25747867
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 246 bits (124), Expect = 2e-062
Identities = 190/212 (89%)
Strand = Plus / Minus
Query: 445 acaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttcc 504
||||| || ||||||||| |||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 25917484 acaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttcc 25917425
Query: 505 acggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttg 564
| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 25917424 attgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtataccctttg 25917365
Query: 565 gtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggct 624
| ||||||||| || ||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct: 25917364 gagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggcatggct 25917305
Query: 625 cctaacttggtgtagcaggcggccctattgct 656
|| |||||||||||||| || |||||||||||
Sbjct: 25917304 cccaacttggtgtagcatgcagccctattgct 25917273
Score = 153 bits (77), Expect = 2e-034
Identities = 150/174 (86%), Gaps = 1/174 (0%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||||||||| |||||||| || ||||||||||| ||||||||||||| ||||||
Sbjct: 25916700 cctttctctctctcttcatctgctaactttggatcatagtactcttgttgctccaactct 25916641
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
|||||||| ||||||||||| ||| |||||| ||||| ||||| ||||||||| ||||
Sbjct: 25916640 ttctttgccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagtt 25916581
Query: 868 agagccttctgggaggnctcgatagcaatatca-aatccttagagggcttagca 920
|||||||||||| | | ||| || ||||| ||| | |||||||||| |||||||
Sbjct: 25916580 agagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttagca 25916527
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
||||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||
Sbjct: 25918106 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 25918047
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaaatc 302
|||| || |||||||| | || || ||||||||||| |||||
Sbjct: 25918046 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 25918004
Score = 71.9 bits (36), Expect = 6e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 310 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 369
|||||||||||||| || || |||||||| |||||||||||||| || |||||||| |||
Sbjct: 25917891 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagccttg 25917832
Query: 370 ttct 373
||||
Sbjct: 25917831 ttct 25917828
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 403 tcacctctgttggccttgttgatctgttcaacacacct 440
||||| ||||||||||||||||||||||| | ||||||
Sbjct: 25917709 tcacccctgttggccttgttgatctgttcgatacacct 25917672
Score = 48.1 bits (24), Expect = 0.009
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 670 tccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 729
||||| || |||||| ||| |||||| ||||| || |||| || ||||| |||||||||
Sbjct: 25916942 tccttaggatttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgc 25916883
Query: 730 tccttgaa 737
||||||||
Sbjct: 25916882 tccttgaa 25916875
>dbj|AG208077.1| Oryza sativa (japonica cultivar-group) DNA, clone:T12882T, 3'
flanking sequence of Tos17 insertion in rice strain
NE1501, genomic survey sequence
Length = 730
Score = 167 bits (84), Expect = 1e-038
Identities = 186/220 (84%)
Strand = Plus / Plus
Query: 437 acctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggt 496
||||| ||||||||||||||| ||||||||||||||||||||||| | ||| ||||| |
Sbjct: 171 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 230
Query: 497 aggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtat 556
||||||||| || |||||||||||||||||||| || || |||||||||||||| || |
Sbjct: 231 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 290
Query: 557 accctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcag 616
| || |||| ||| || || || ||||||| || ||||| || ||||| ||||||||||
Sbjct: 291 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 350
Query: 617 gcatggctcctaacttggtgtagcaggcggccctattgct 656
|||| ||||| | |||||| || ||||||||||| |||||
Sbjct: 351 gcattgctccaagcttggtataacaggcggccctgttgct 390
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 372 ctgtctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatc 426
|||||||||||||||||| |||||||| | ||| |||||| | ||||||||||||
Sbjct: 20 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgttgatc 74
>gb|C26452.1|C26452 C26452 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C12349_1A, mRNA sequence
Length = 445
Score = 167 bits (84), Expect = 1e-038
Identities = 231/277 (83%), Gaps = 4/277 (1%)
Strand = Plus / Minus
Query: 604 ttaagaccttcaggcatggctcctaacttggtgtagcaggcggccctattgctataaacc 663
|||||||||| |||||||||||| ||||||||| |||| || ||||||||||| || ||
Sbjct: 444 ttaagacctt-aggcatggctccnaacttggtgnagcatgcagccctattgctgtacacn 386
Query: 664 ctaggatccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtat 723
| || ||||| || || | | ||| |||||| ||||| || |||| || |||| |||
Sbjct: 385 -tcgggtccttaggatt-cncctgatagcctcagtgtaatgctttaccgcgcctggatat 328
Query: 724 ttttgctccttgaagaactcgttgcctttctctctctcct-catctgccaattttggatc 782
|||||||||||||| | || || |||||||||||||||| ||||||| || ||||||||
Sbjct: 327 ttttgctccttgaaaagctgattacctttctctctctccttcatctgctaactttggatc 268
Query: 783 ataaaactcttgttgctctaactctttctttgctttctcagcctcanttaactttttaag 842
||| ||||||||||||| |||||||||||||| ||||||||| | ||| |||||| ||
Sbjct: 267 atagtactcttgttgctccaactctttctttgccctctcagcctnatttagcttttttag 208
Query: 843 agtttctgggttccgatgcncagtcagagccttctgg 879
||| ||||| ||||||||| |||| ||||||||||||
Sbjct: 207 agtgtctggattccgatgctcagttagagccttctgg 171
>gb|AACV01010199.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010199, whole
genome shotgun sequence
Length = 11181
Score = 167 bits (84), Expect = 1e-038
Identities = 186/220 (84%)
Strand = Plus / Minus
Query: 437 acctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggt 496
||||| ||||||||||||||| ||||||||||||||||||||||| | ||| ||||| |
Sbjct: 5419 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 5360
Query: 497 aggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtat 556
||||||||| || |||||||||||||||||||| || || |||||||||||||| || |
Sbjct: 5359 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 5300
Query: 557 accctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcag 616
| || |||| ||| || || || ||||||| || ||||| || ||||| ||||||||||
Sbjct: 5299 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 5240
Query: 617 gcatggctcctaacttggtgtagcaggcggccctattgct 656
|||| ||||| | |||||| || ||||||||||| |||||
Sbjct: 5239 gcattgctccaagcttggtataacaggcggccctgttgct 5200
Score = 67.9 bits (34), Expect = 9e-009
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||||| ||||||||| || | |||||||||||| ||||||| ||||||| |||
Sbjct: 4766 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 4707
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
||||||||| | ||||| ||| | | || || || || |||||||| | ||| |||||
Sbjct: 4706 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 4647
Query: 868 agagcctt 875
||||||||
Sbjct: 4646 agagcctt 4639
Score = 65.9 bits (33), Expect = 4e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 211 actatcccagcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgc 270
|||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 6280 actatccctgcacttactagcttctggatcttctgcatcactccggggttcttgagatgc 6221
Query: 271 tcctgggccgcacttgggttctcctggaa 299
|||| || || | || |||||||||||
Sbjct: 6220 gcctgagcagccttcggattctcctggaa 6192
Score = 63.9 bits (32), Expect = 1e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 661 accctaggatccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctggg 720
||||| |||||||| ||||||||| ||||||| || |||| || || | ||||||||||
Sbjct: 4944 acccttggatccttggggtttctcctgagagcttcactgtaatgcttcactgcttctggg 4885
Query: 721 tatttttgctccttgaagaa 740
||||| |||| |||||||||
Sbjct: 4884 tatttctgctgcttgaagaa 4865
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 372 ctgtctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatc 426
|||||||||||||||||| |||||||| | ||| |||||| | ||||||||||||
Sbjct: 5570 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgttgatc 5516
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 317 gcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 374
|||||||||| || | |||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 6082 gcatgataggatccttcagaatgttctggatttctgggtcctgcatagccttgttctg 6025
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 167 bits (84), Expect = 1e-038
Identities = 186/220 (84%)
Strand = Plus / Minus
Query: 437 acctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggt 496
||||| ||||||||||||||| ||||||||||||||||||||||| | ||| ||||| |
Sbjct: 665679 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 665620
Query: 497 aggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtat 556
||||||||| || |||||||||||||||||||| || || |||||||||||||| || |
Sbjct: 665619 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 665560
Query: 557 accctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcag 616
| || |||| ||| || || || ||||||| || ||||| || ||||| ||||||||||
Sbjct: 665559 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 665500
Query: 617 gcatggctcctaacttggtgtagcaggcggccctattgct 656
|||| ||||| | |||||| || ||||||||||| |||||
Sbjct: 665499 gcattgctccaagcttggtataacaggcggccctgttgct 665460
Score = 67.9 bits (34), Expect = 9e-009
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||||| ||||||||| || | |||||||||||| ||||||| ||||||| |||
Sbjct: 665026 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 664967
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
||||||||| | ||||| ||| | | || || || || |||||||| | ||| |||||
Sbjct: 664966 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 664907
Query: 868 agagcctt 875
||||||||
Sbjct: 664906 agagcctt 664899
Score = 65.9 bits (33), Expect = 4e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 211 actatcccagcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgc 270
|||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 666540 actatccctgcacttactagcttctggatcttctgcatcactccggggttcttgagatgc 666481
Query: 271 tcctgggccgcacttgggttctcctggaa 299
|||| || || | || |||||||||||
Sbjct: 666480 gcctgagcagccttcggattctcctggaa 666452
Score = 63.9 bits (32), Expect = 1e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 661 accctaggatccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctggg 720
||||| |||||||| ||||||||| ||||||| || |||| || || | ||||||||||
Sbjct: 665204 acccttggatccttggggtttctcctgagagcttcactgtaatgcttcactgcttctggg 665145
Query: 721 tatttttgctccttgaagaa 740
||||| |||| |||||||||
Sbjct: 665144 tatttctgctgcttgaagaa 665125
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 372 ctgtctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatc 426
|||||||||||||||||| |||||||| | ||| |||||| | ||||||||||||
Sbjct: 665830 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgttgatc 665776
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 317 gcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 374
|||||||||| || | |||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 666342 gcatgataggatccttcagaatgttctggatttctgggtcctgcatagccttgttctg 666285
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 167 bits (84), Expect = 1e-038
Identities = 186/220 (84%)
Strand = Plus / Minus
Query: 437 acctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggt 496
||||| ||||||||||||||| ||||||||||||||||||||||| | ||| ||||| |
Sbjct: 4710392 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 4710333
Query: 497 aggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtat 556
||||||||| || |||||||||||||||||||| || || |||||||||||||| || |
Sbjct: 4710332 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 4710273
Query: 557 accctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcag 616
| || |||| ||| || || || ||||||| || ||||| || ||||| ||||||||||
Sbjct: 4710272 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 4710213
Query: 617 gcatggctcctaacttggtgtagcaggcggccctattgct 656
|||| ||||| | |||||| || ||||||||||| |||||
Sbjct: 4710212 gcattgctccaagcttggtataacaggcggccctgttgct 4710173
Score = 67.9 bits (34), Expect = 9e-009
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||||| ||||||||| || | |||||||||||| ||||||| ||||||| |||
Sbjct: 4709739 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 4709680
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
||||||||| | ||||| ||| | | || || || || |||||||| | ||| |||||
Sbjct: 4709679 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 4709620
Query: 868 agagcctt 875
||||||||
Sbjct: 4709619 agagcctt 4709612
Score = 65.9 bits (33), Expect = 4e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 211 actatcccagcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgc 270
|||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 4711253 actatccctgcacttactagcttctggatcttctgcatcactccggggttcttgagatgc 4711194
Query: 271 tcctgggccgcacttgggttctcctggaa 299
|||| || || | || |||||||||||
Sbjct: 4711193 gcctgagcagccttcggattctcctggaa 4711165
Score = 63.9 bits (32), Expect = 1e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 661 accctaggatccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctggg 720
||||| |||||||| ||||||||| ||||||| || |||| || || | ||||||||||
Sbjct: 4709917 acccttggatccttggggtttctcctgagagcttcactgtaatgcttcactgcttctggg 4709858
Query: 721 tatttttgctccttgaagaa 740
||||| |||| |||||||||
Sbjct: 4709857 tatttctgctgcttgaagaa 4709838
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 372 ctgtctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatc 426
|||||||||||||||||| |||||||| | ||| |||||| | ||||||||||||
Sbjct: 4710543 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgttgatc 4710489
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 317 gcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 374
|||||||||| || | |||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 4711055 gcatgataggatccttcagaatgttctggatttctgggtcctgcatagccttgttctg 4710998
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 167 bits (84), Expect = 1e-038
Identities = 186/220 (84%)
Strand = Plus / Minus
Query: 437 acctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggt 496
||||| ||||||||||||||| ||||||||||||||||||||||| | ||| ||||| |
Sbjct: 23854491 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 23854432
Query: 497 aggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtat 556
||||||||| || |||||||||||||||||||| || || |||||||||||||| || |
Sbjct: 23854431 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 23854372
Query: 557 accctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcag 616
| || |||| ||| || || || ||||||| || ||||| || ||||| ||||||||||
Sbjct: 23854371 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 23854312
Query: 617 gcatggctcctaacttggtgtagcaggcggccctattgct 656
|||| ||||| | |||||| || ||||||||||| |||||
Sbjct: 23854311 gcattgctccaagcttggtataacaggcggccctgttgct 23854272
Score = 67.9 bits (34), Expect = 9e-009
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||||| ||||||||| || | |||||||||||| ||||||| ||||||| |||
Sbjct: 23853838 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 23853779
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
||||||||| | ||||| ||| | | || || || || |||||||| | ||| |||||
Sbjct: 23853778 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 23853719
Query: 868 agagcctt 875
||||||||
Sbjct: 23853718 agagcctt 23853711
Score = 65.9 bits (33), Expect = 4e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 211 actatcccagcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgc 270
|||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 23855352 actatccctgcacttactagcttctggatcttctgcatcactccggggttcttgagatgc 23855293
Query: 271 tcctgggccgcacttgggttctcctggaa 299
|||| || || | || |||||||||||
Sbjct: 23855292 gcctgagcagccttcggattctcctggaa 23855264
Score = 63.9 bits (32), Expect = 1e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 661 accctaggatccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctggg 720
||||| |||||||| ||||||||| ||||||| || |||| || || | ||||||||||
Sbjct: 23854016 acccttggatccttggggtttctcctgagagcttcactgtaatgcttcactgcttctggg 23853957
Query: 721 tatttttgctccttgaagaa 740
||||| |||| |||||||||
Sbjct: 23853956 tatttctgctgcttgaagaa 23853937
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 372 ctgtctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatc 426
|||||||||||||||||| |||||||| | ||| |||||| | ||||||||||||
Sbjct: 23854642 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgttgatc 23854588
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 317 gcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 374
|||||||||| || | |||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 23855154 gcatgataggatccttcagaatgttctggatttctgggtcctgcatagccttgttctg 23855097
>emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091D06,
complete sequence
Length = 174570
Score = 167 bits (84), Expect = 1e-038
Identities = 186/220 (84%)
Strand = Plus / Minus
Query: 437 acctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggt 496
||||| ||||||||||||||| ||||||||||||||||||||||| | ||| ||||| |
Sbjct: 110195 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 110136
Query: 497 aggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtat 556
||||||||| || |||||||||||||||||||| || || |||||||||||||| || |
Sbjct: 110135 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 110076
Query: 557 accctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcag 616
| || |||| ||| || || || ||||||| || ||||| || ||||| ||||||||||
Sbjct: 110075 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 110016
Query: 617 gcatggctcctaacttggtgtagcaggcggccctattgct 656
|||| ||||| | |||||| || ||||||||||| |||||
Sbjct: 110015 gcattgctccaagcttggtataacaggcggccctgttgct 109976
Score = 67.9 bits (34), Expect = 9e-009
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||||| ||||||||| || | |||||||||||| ||||||| ||||||| |||
Sbjct: 109542 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 109483
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
||||||||| | ||||| ||| | | || || || || |||||||| | ||| |||||
Sbjct: 109482 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 109423
Query: 868 agagcctt 875
||||||||
Sbjct: 109422 agagcctt 109415
Score = 65.9 bits (33), Expect = 4e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 211 actatcccagcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgc 270
|||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 111056 actatccctgcacttactagcttctggatcttctgcatcactccggggttcttgagatgc 110997
Query: 271 tcctgggccgcacttgggttctcctggaa 299
|||| || || | || |||||||||||
Sbjct: 110996 gcctgagcagccttcggattctcctggaa 110968
Score = 63.9 bits (32), Expect = 1e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 661 accctaggatccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctggg 720
||||| |||||||| ||||||||| ||||||| || |||| || || | ||||||||||
Sbjct: 109720 acccttggatccttggggtttctcctgagagcttcactgtaatgcttcactgcttctggg 109661
Query: 721 tatttttgctccttgaagaa 740
||||| |||| |||||||||
Sbjct: 109660 tatttctgctgcttgaagaa 109641
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 372 ctgtctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatc 426
|||||||||||||||||| |||||||| | ||| |||||| | ||||||||||||
Sbjct: 110346 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgttgatc 110292
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 317 gcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 374
|||||||||| || | |||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 110858 gcatgataggatccttcagaatgttctggatttctgggtcctgcatagccttgttctg 110801
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 167 bits (84), Expect = 1e-038
Identities = 186/220 (84%)
Strand = Plus / Minus
Query: 437 acctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggt 496
||||| ||||||||||||||| ||||||||||||||||||||||| | ||| ||||| |
Sbjct: 26889135 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 26889076
Query: 497 aggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtat 556
||||||||| || |||||||||||||||||||| || || |||||||||||||| || |
Sbjct: 26889075 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 26889016
Query: 557 accctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcag 616
| || |||| ||| || || || ||||||| || ||||| || ||||| ||||||||||
Sbjct: 26889015 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 26888956
Query: 617 gcatggctcctaacttggtgtagcaggcggccctattgct 656
|||| ||||| | |||||| || ||||||||||| |||||
Sbjct: 26888955 gcattgctccaagcttggtataacaggcggccctgttgct 26888916
Score = 67.9 bits (34), Expect = 9e-009
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||||| ||||||||| || | |||||||||||| ||||||| ||||||| |||
Sbjct: 26888482 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 26888423
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
||||||||| | ||||| ||| | | || || || || |||||||| | ||| |||||
Sbjct: 26888422 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 26888363
Query: 868 agagcctt 875
||||||||
Sbjct: 26888362 agagcctt 26888355
Score = 65.9 bits (33), Expect = 4e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 211 actatcccagcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgc 270
|||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 26889996 actatccctgcacttactagcttctggatcttctgcatcactccggggttcttgagatgc 26889937
Query: 271 tcctgggccgcacttgggttctcctggaa 299
|||| || || | || |||||||||||
Sbjct: 26889936 gcctgagcagccttcggattctcctggaa 26889908
Score = 63.9 bits (32), Expect = 1e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 661 accctaggatccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctggg 720
||||| |||||||| ||||||||| ||||||| || |||| || || | ||||||||||
Sbjct: 26888660 acccttggatccttggggtttctcctgagagcttcactgtaatgcttcactgcttctggg 26888601
Query: 721 tatttttgctccttgaagaa 740
||||| |||| |||||||||
Sbjct: 26888600 tatttctgctgcttgaagaa 26888581
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 372 ctgtctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatc 426
|||||||||||||||||| |||||||| | ||| |||||| | ||||||||||||
Sbjct: 26889286 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgttgatc 26889232
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 317 gcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 374
|||||||||| || | |||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 26889798 gcatgataggatccttcagaatgttctggatttctgggtcctgcatagccttgttctg 26889741
>gb|AQ271754.1|AQ271754 nbxb0026L09r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0026L09r, DNA sequence
Length = 837
Score = 159 bits (80), Expect = 3e-036
Identities = 185/220 (84%)
Strand = Plus / Minus
Query: 437 acctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggt 496
||||| ||||||||||||||| ||||||||||||||||||||||| | ||| ||||| |
Sbjct: 249 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 190
Query: 497 aggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtat 556
||||||||| || |||||||||||||||||||| || || |||||||||||||| || |
Sbjct: 189 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 130
Query: 557 accctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcag 616
| || |||| ||| || || || ||||||| || ||||| || ||||| ||||||||||
Sbjct: 129 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 70
Query: 617 gcatggctcctaacttggtgtagcaggcggccctattgct 656
|||| ||||| | ||||| || ||||||||||| |||||
Sbjct: 69 gcattgctccaagattggtataacaggcggccctgttgct 30
Score = 61.9 bits (31), Expect = 6e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 372 ctgtctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatc 426
|||||||||||||||||| |||||||| | ||| |||||| | ||||||||||||
Sbjct: 400 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgttgatc 346
>dbj|AK059659.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D09, full
insert sequence
Length = 418
Score = 103 bits (52), Expect = 2e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
||||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||
Sbjct: 139 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 80
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgtcgca 319
|||| || |||||||| | || || ||||||||||| ||||| | || ||||||||||
Sbjct: 79 tcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgca 20
Query: 320 tgat 323
||||
Sbjct: 19 tgat 16
>gb|AU092316.2|AU092316 AU092316 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12349, mRNA sequence
Length = 381
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
||||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||
Sbjct: 109 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 50
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaaatc 302
|||| || |||||||| | || || ||||||||||| |||||
Sbjct: 49 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 7
>dbj|AK108496.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G10, full
insert sequence
Length = 871
Score = 46.1 bits (23), Expect = 0.034
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 229 agcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggccgcacttggg 288
|||||||| ||||||||||| || ||||||||||| || ||| |||| || || | ||
Sbjct: 94 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 35
Query: 289 ttctcctggaa 299
|||||||||||
Sbjct: 34 ttctcctggaa 24
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,392,678
Number of Sequences: 438736
Number of extensions: 1392678
Number of successful extensions: 8548
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8325
Number of HSP's gapped (non-prelim): 217
length of query: 932
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 911
effective length of database: 2,791,206,460
effective search space: 2542789085060
effective search space used: 2542789085060
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)