BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404820.2.1
(830 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY324384.1| Oryza sativa (japonica cultivar-group) callo... 313 8e-083
ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA 313 8e-083
gb|CB659584.1|CB659584 OSJNEc16L01.r OSJNEc Oryza sativa (j... 311 3e-082
dbj|AK105109.1| Oryza sativa (japonica cultivar-group) cDNA... 305 2e-080
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 208 4e-051
dbj|AP005290.2| Oryza sativa (japonica cultivar-group) geno... 208 4e-051
gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) c... 208 4e-051
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 208 4e-051
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 208 4e-051
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 208 4e-051
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 208 4e-051
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 149 3e-033
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 149 3e-033
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 149 3e-033
gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) c... 149 3e-033
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 149 3e-033
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 149 3e-033
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 149 3e-033
gb|AQ292177.1|AQ292177 nbxb0042J10r CUGI Rice BAC Library O... 48 0.008
dbj|AG024945.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.008
dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chro... 48 0.008
emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC O... 48 0.008
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 48 0.008
gb|AACV01013161.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
gb|AACV01025408.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 48 0.008
dbj|AP007257.2| Oryza sativa (japonica cultivar-group) geno... 48 0.008
dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mito... 48 0.008
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 48 0.008
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.12
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 44 0.12
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 44 0.12
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 44 0.12
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 44 0.12
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.12
>gb|AY324384.1| Oryza sativa (japonica cultivar-group) callose synthase-like protein
mRNA, partial cds
Length = 2727
Score = 313 bits (158), Expect = 8e-083
Identities = 334/395 (84%)
Strand = Plus / Minus
Query: 366 agcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtc 425
|||| |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 2474 agcagaccccagccagttggcatgaaggcaagaatgcaaacaaagatgtcctggactgtc 2415
Query: 426 atgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcagcccc 485
|| || |||||||||||||||||||| || || |||||||| ||||| ||||||| ||||
Sbjct: 2414 atatgagggattgctatcaagattataatgatggagataaatgttataaatatcaacccc 2355
Query: 486 ttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactgataca 545
|| |||| |||||||||||| ||||| || || |||||||||| ||| |||||||| ||
Sbjct: 2354 ttaatcaaccggaacacaagttggaagtccgcgctgaatttccgcctcccaactgacacg 2295
Query: 546 gtcttcatcacgagcaaaatgacaaagattatgacccacgagatgcnntaaaccagaacg 605
||||||||||| |||| ||| |||||||| | ||||| || | || || ||||| ||
Sbjct: 2294 gtcttcatcacaagcagaattacaaagatgacaacccatgacaggcaatagaccaggaca 2235
Query: 606 ctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatactggtaaataaagaag 665
||||| ||||| |||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 2234 ctctttgtgtgtttggttatgttcaagtgataaacaagaccatattggtagataaagaag 2175
Query: 666 cgcaacgaaagcactatttcaagaacagtgccacgctttccagaatgcctaagannctcc 725
||||| | |||||||||||| |||||| | |||||||| ||||||| | | | ||||
Sbjct: 2174 cgcaatgcaagcactatttcgagaacaattccacgcttcccagaatattttataggctcc 2115
Query: 726 tgctctttttcccaccatgactnncancttttctc 760
|||||||| ||||||||||||| || ||||||||
Sbjct: 2114 tgctctttctcccaccatgactcccaacttttctc 2080
Score = 208 bits (105), Expect = 4e-051
Identities = 180/205 (87%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||||| ||| |||||||||||||| ||||| ||||| || || |||||||
Sbjct: 2725 actccttgttccgtgtagctcggtctttcttgtggccgccaaggattcgcgagatctgca 2666
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
||||||| ||||||||||||||||| ||||| || | ||||||||| || ||||||||||
Sbjct: 2665 gacctctgctgaaggcctggttgaagagcattctggtctggaactcggatacaaacggga 2606
Query: 235 accaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcatagcctc 294
||||||||||||| |||||||||||||| | ||| | ||||||||||||||||| || |
Sbjct: 2605 accaagcgaggaacgcgatcggggtgaagagcaggagccccatgatgatctcatatcccc 2546
Query: 295 gggcaagcgccttgaccgatcccca 319
||||||||||||| |||||||||
Sbjct: 2545 tcgcaagcgccttgatcgatcccca 2521
>ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5910
Score = 313 bits (158), Expect = 8e-083
Identities = 334/395 (84%)
Strand = Plus / Minus
Query: 366 agcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtc 425
|||| |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 5657 agcagaccccagccagttggcatgaaggcaagaatgcaaacaaagatgtcctggactgtc 5598
Query: 426 atgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcagcccc 485
|| || |||||||||||||||||||| || || |||||||| ||||| ||||||| ||||
Sbjct: 5597 atatgagggattgctatcaagattataatgatggagataaatgttataaatatcaacccc 5538
Query: 486 ttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactgataca 545
|| |||| |||||||||||| ||||| || || |||||||||| ||| |||||||| ||
Sbjct: 5537 ttaatcaaccggaacacaagttggaagtccgcgctgaatttccgcctcccaactgacacg 5478
Query: 546 gtcttcatcacgagcaaaatgacaaagattatgacccacgagatgcnntaaaccagaacg 605
||||||||||| |||| ||| |||||||| | ||||| || | || || ||||| ||
Sbjct: 5477 gtcttcatcacaagcagaattacaaagatgacaacccatgacaggcaatagaccaggaca 5418
Query: 606 ctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatactggtaaataaagaag 665
||||| ||||| |||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 5417 ctctttgtgtgtttggttatgttcaagtgataaacaagaccatattggtagataaagaag 5358
Query: 666 cgcaacgaaagcactatttcaagaacagtgccacgctttccagaatgcctaagannctcc 725
||||| | |||||||||||| |||||| | |||||||| ||||||| | | | ||||
Sbjct: 5357 cgcaatgcaagcactatttcgagaacaattccacgcttcccagaatattttataggctcc 5298
Query: 726 tgctctttttcccaccatgactnncancttttctc 760
|||||||| ||||||||||||| || ||||||||
Sbjct: 5297 tgctctttctcccaccatgactcccaacttttctc 5263
Score = 208 bits (105), Expect = 4e-051
Identities = 180/205 (87%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||||| ||| |||||||||||||| ||||| ||||| || || |||||||
Sbjct: 5908 actccttgttccgtgtagctcggtctttcttgtggccgccaaggattcgcgagatctgca 5849
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
||||||| ||||||||||||||||| ||||| || | ||||||||| || ||||||||||
Sbjct: 5848 gacctctgctgaaggcctggttgaagagcattctggtctggaactcggatacaaacggga 5789
Query: 235 accaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcatagcctc 294
||||||||||||| |||||||||||||| | ||| | ||||||||||||||||| || |
Sbjct: 5788 accaagcgaggaacgcgatcggggtgaagagcaggagccccatgatgatctcatatcccc 5729
Query: 295 gggcaagcgccttgaccgatcccca 319
||||||||||||| |||||||||
Sbjct: 5728 tcgcaagcgccttgatcgatcccca 5704
>gb|CB659584.1|CB659584 OSJNEc16L01.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16L01 3', mRNA sequence
Length = 760
Score = 311 bits (157), Expect = 3e-082
Identities = 333/394 (84%)
Strand = Plus / Plus
Query: 366 agcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtc 425
|||| |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 367 agcagaccccagccagttggcatgaaggcaagaatgcaaacaaagatgtcctggactgtc 426
Query: 426 atgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcagcccc 485
|| || |||||||||||||||||||| || || |||||||| ||||| ||||||| ||||
Sbjct: 427 atatgagggattgctatcaagattataatgatggagataaatgttataaatatcaacccc 486
Query: 486 ttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactgataca 545
|| |||| |||||||||||| ||||| || || |||||||||| ||| |||||||| ||
Sbjct: 487 ttaatcaaccggaacacaagttggaagtccgcgctgaatttccgcctcccaactgacacg 546
Query: 546 gtcttcatcacgagcaaaatgacaaagattatgacccacgagatgcnntaaaccagaacg 605
||||||||||| |||| ||| |||||||| | ||||| || | || || ||||| ||
Sbjct: 547 gtcttcatcacaagcagaattacaaagatgacaacccatgacaggcaatagaccaggaca 606
Query: 606 ctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatactggtaaataaagaag 665
||||| ||||| |||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 607 ctctttgtgtgtttggttatgttcaagtgataaacaagaccatattggtagataaagaag 666
Query: 666 cgcaacgaaagcactatttcaagaacagtgccacgctttccagaatgcctaagannctcc 725
||||| | |||||||||||| |||||| | |||||||| ||||||| | | | ||||
Sbjct: 667 cgcaatgcaagcactatttcgagaacaattccacgcttcccagaatattttataggctcc 726
Query: 726 tgctctttttcccaccatgactnncancttttct 759
|||||||| ||||||||||||| || |||||||
Sbjct: 727 tgctctttctcccaccatgactcccaacttttct 760
Score = 208 bits (105), Expect = 4e-051
Identities = 180/205 (87%)
Strand = Plus / Plus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||||| ||| |||||||||||||| ||||| ||||| || || |||||||
Sbjct: 116 actccttgttccgtgtagctcggtctttcttgtggccgccaaggattcgcgagatctgca 175
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
||||||| ||||||||||||||||| ||||| || | ||||||||| || ||||||||||
Sbjct: 176 gacctctgctgaaggcctggttgaagagcattctggtctggaactcggatacaaacggga 235
Query: 235 accaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcatagcctc 294
||||||||||||| |||||||||||||| | ||| | ||||||||||||||||| || |
Sbjct: 236 accaagcgaggaacgcgatcggggtgaagagcaggagccccatgatgatctcatatcccc 295
Query: 295 gggcaagcgccttgaccgatcccca 319
||||||||||||| |||||||||
Sbjct: 296 tcgcaagcgccttgatcgatcccca 320
>dbj|AK105109.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F07, full
insert sequence
Length = 1292
Score = 305 bits (154), Expect = 2e-080
Identities = 333/395 (84%)
Strand = Plus / Minus
Query: 366 agcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtc 425
|||| |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 684 agcagaccccagccagttggcatgaaggcaagaatgcaaacaaagatgtcctggactgtc 625
Query: 426 atgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcagcccc 485
|| || ||||||| |||||||||||| || || |||||||| ||||| ||||||| ||||
Sbjct: 624 atatgagggattgttatcaagattataatgatggagataaatgttataaatatcaacccc 565
Query: 486 ttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactgataca 545
|| |||| |||||||||||| ||||| || || |||||||||| ||| |||||||| ||
Sbjct: 564 ttaatcaaccggaacacaagttggaagtccgcgctgaatttccgcctcccaactgacacg 505
Query: 546 gtcttcatcacgagcaaaatgacaaagattatgacccacgagatgcnntaaaccagaacg 605
||||||||||| |||| ||| |||||||| | ||||| || | || || ||||| ||
Sbjct: 504 gtcttcatcacaagcagaattacaaagatgacaacccatgacaggcaatagaccaggaca 445
Query: 606 ctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatactggtaaataaagaag 665
||||| ||||| |||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 444 ctctttgtgtgtttggttatgttcaagtgataaacaagaccatattggtagataaagaag 385
Query: 666 cgcaacgaaagcactatttcaagaacagtgccacgctttccagaatgcctaagannctcc 725
||||| | |||||||||||| |||||| | |||||||| ||||||| | | | ||||
Sbjct: 384 cgcaatgcaagcactatttcgagaacaattccacgcttcccagaatattttataggctcc 325
Query: 726 tgctctttttcccaccatgactnncancttttctc 760
|||||||| ||||||||||||| || ||||||||
Sbjct: 324 tgctctttctcccaccatgactcccaacttttctc 290
Score = 208 bits (105), Expect = 4e-051
Identities = 180/205 (87%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||||| ||| |||||||||||||| ||||| ||||| || || |||||||
Sbjct: 935 actccttgttccgtgtagctcggtctttcttgtggccgccaaggattcgcgagatctgca 876
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
||||||| ||||||||||||||||| ||||| || | ||||||||| || ||||||||||
Sbjct: 875 gacctctgctgaaggcctggttgaagagcattctggtctggaactcggatacaaacggga 816
Query: 235 accaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcatagcctc 294
||||||||||||| |||||||||||||| | ||| | ||||||||||||||||| || |
Sbjct: 815 accaagcgaggaacgcgatcggggtgaagagcaggagccccatgatgatctcatatcccc 756
Query: 295 gggcaagcgccttgaccgatcccca 319
||||||||||||| |||||||||
Sbjct: 755 tcgcaagcgccttgatcgatcccca 731
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1149_C12
Length = 120743
Score = 208 bits (105), Expect = 4e-051
Identities = 180/205 (87%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||||| ||| |||||||||||||| ||||| ||||| || || |||||||
Sbjct: 93346 actccttgttccgtgtagctcggtctttcttgtggccgccaaggattcgcgagatctgca 93287
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
||||||| ||||||||||||||||| ||||| || | ||||||||| || ||||||||||
Sbjct: 93286 gacctctgctgaaggcctggttgaagagcattctggtctggaactcggatacaaacggga 93227
Query: 235 accaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcatagcctc 294
||||||||||||| |||||||||||||| | ||| | ||||||||||||||||| || |
Sbjct: 93226 accaagcgaggaacgcgatcggggtgaagagcaggagccccatgatgatctcatatcccc 93167
Query: 295 gggcaagcgccttgaccgatcccca 319
||||||||||||| |||||||||
Sbjct: 93166 tcgcaagcgccttgatcgatcccca 93142
Score = 182 bits (92), Expect = 2e-043
Identities = 155/176 (88%)
Strand = Plus / Minus
Query: 366 agcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtc 425
|||| |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 93017 agcagaccccagccagttggcatgaaggcaagaatgcaaacaaagatgtcctggactgtc 92958
Query: 426 atgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcagcccc 485
|| || |||||||||||||||||||| || || |||||||| ||||| ||||||| ||||
Sbjct: 92957 atatgagggattgctatcaagattataatgatggagataaatgttataaatatcaacccc 92898
Query: 486 ttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|| |||| |||||||||||| ||||| || || |||||||||| ||| ||||||||
Sbjct: 92897 ttaatcaaccggaacacaagttggaagtccgcgctgaatttccgcctcccaactga 92842
Score = 129 bits (65), Expect = 3e-027
Identities = 138/164 (84%)
Strand = Plus / Minus
Query: 597 accagaacgctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatactggtaa 656
||||| || ||||| ||||| |||| |||||||| ||||||||||||||||| |||||
Sbjct: 92393 accaggacactctttgtgtgtttggttatgttcaagtgataaacaagaccatattggtag 92334
Query: 657 ataaagaagcgcaacgaaagcactatttcaagaacagtgccacgctttccagaatgccta 716
|||||||||||||| | |||||||||||| |||||| | |||||||| ||||||| |
Sbjct: 92333 ataaagaagcgcaatgcaagcactatttcgagaacaattccacgcttcccagaatatttt 92274
Query: 717 agannctcctgctctttttcccaccatgactnncancttttctc 760
| | |||||||||||| ||||||||||||| || ||||||||
Sbjct: 92273 ataggctcctgctctttctcccaccatgactcccaacttttctc 92230
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_E10
Length = 107284
Score = 208 bits (105), Expect = 4e-051
Identities = 180/205 (87%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||||| ||| |||||||||||||| ||||| ||||| || || |||||||
Sbjct: 13177 actccttgttccgtgtagctcggtctttcttgtggccgccaaggattcgcgagatctgca 13118
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
||||||| ||||||||||||||||| ||||| || | ||||||||| || ||||||||||
Sbjct: 13117 gacctctgctgaaggcctggttgaagagcattctggtctggaactcggatacaaacggga 13058
Query: 235 accaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcatagcctc 294
||||||||||||| |||||||||||||| | ||| | ||||||||||||||||| || |
Sbjct: 13057 accaagcgaggaacgcgatcggggtgaagagcaggagccccatgatgatctcatatcccc 12998
Query: 295 gggcaagcgccttgaccgatcccca 319
||||||||||||| |||||||||
Sbjct: 12997 tcgcaagcgccttgatcgatcccca 12973
Score = 182 bits (92), Expect = 2e-043
Identities = 155/176 (88%)
Strand = Plus / Minus
Query: 366 agcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtc 425
|||| |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 12848 agcagaccccagccagttggcatgaaggcaagaatgcaaacaaagatgtcctggactgtc 12789
Query: 426 atgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcagcccc 485
|| || |||||||||||||||||||| || || |||||||| ||||| ||||||| ||||
Sbjct: 12788 atatgagggattgctatcaagattataatgatggagataaatgttataaatatcaacccc 12729
Query: 486 ttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|| |||| |||||||||||| ||||| || || |||||||||| ||| ||||||||
Sbjct: 12728 ttaatcaaccggaacacaagttggaagtccgcgctgaatttccgcctcccaactga 12673
Score = 129 bits (65), Expect = 3e-027
Identities = 138/164 (84%)
Strand = Plus / Minus
Query: 597 accagaacgctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatactggtaa 656
||||| || ||||| ||||| |||| |||||||| ||||||||||||||||| |||||
Sbjct: 12224 accaggacactctttgtgtgtttggttatgttcaagtgataaacaagaccatattggtag 12165
Query: 657 ataaagaagcgcaacgaaagcactatttcaagaacagtgccacgctttccagaatgccta 716
|||||||||||||| | |||||||||||| |||||| | |||||||| ||||||| |
Sbjct: 12164 ataaagaagcgcaatgcaagcactatttcgagaacaattccacgcttcccagaatatttt 12105
Query: 717 agannctcctgctctttttcccaccatgactnncancttttctc 760
| | |||||||||||| ||||||||||||| || ||||||||
Sbjct: 12104 ataggctcctgctctttctcccaccatgactcccaacttttctc 12061
>gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005686, whole
genome shotgun sequence
Length = 38041
Score = 208 bits (105), Expect = 4e-051
Identities = 180/205 (87%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||||| ||| |||||||||||||| ||||| ||||| || || |||||||
Sbjct: 7701 actccttgttccgtgtagctcggtctttcttgtggccgccaaggattcgcgagatctgca 7642
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
||||||| ||||||||||||||||| ||||| || | ||||||||| || ||||||||||
Sbjct: 7641 gacctctgctgaaggcctggttgaagagcattctggtctggaactcggatacaaacggga 7582
Query: 235 accaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcatagcctc 294
||||||||||||| |||||||||||||| | ||| | ||||||||||||||||| || |
Sbjct: 7581 accaagcgaggaacgcgatcggggtgaagagcaggagccccatgatgatctcatatcccc 7522
Query: 295 gggcaagcgccttgaccgatcccca 319
||||||||||||| |||||||||
Sbjct: 7521 tcgcaagcgccttgatcgatcccca 7497
Score = 182 bits (92), Expect = 2e-043
Identities = 155/176 (88%)
Strand = Plus / Minus
Query: 366 agcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtc 425
|||| |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 7372 agcagaccccagccagttggcatgaaggcaagaatgcaaacaaagatgtcctggactgtc 7313
Query: 426 atgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcagcccc 485
|| || |||||||||||||||||||| || || |||||||| ||||| ||||||| ||||
Sbjct: 7312 atatgagggattgctatcaagattataatgatggagataaatgttataaatatcaacccc 7253
Query: 486 ttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|| |||| |||||||||||| ||||| || || |||||||||| ||| ||||||||
Sbjct: 7252 ttaatcaaccggaacacaagttggaagtccgcgctgaatttccgcctcccaactga 7197
Score = 129 bits (65), Expect = 3e-027
Identities = 138/164 (84%)
Strand = Plus / Minus
Query: 597 accagaacgctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatactggtaa 656
||||| || ||||| ||||| |||| |||||||| ||||||||||||||||| |||||
Sbjct: 6748 accaggacactctttgtgtgtttggttatgttcaagtgataaacaagaccatattggtag 6689
Query: 657 ataaagaagcgcaacgaaagcactatttcaagaacagtgccacgctttccagaatgccta 716
|||||||||||||| | |||||||||||| |||||| | |||||||| ||||||| |
Sbjct: 6688 ataaagaagcgcaatgcaagcactatttcgagaacaattccacgcttcccagaatatttt 6629
Query: 717 agannctcctgctctttttcccaccatgactnncancttttctc 760
| | |||||||||||| ||||||||||||| || ||||||||
Sbjct: 6628 ataggctcctgctctttctcccaccatgactcccaacttttctc 6585
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 208 bits (105), Expect = 4e-051
Identities = 180/205 (87%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||||| ||| |||||||||||||| ||||| ||||| || || |||||||
Sbjct: 1657904 actccttgttccgtgtagctcggtctttcttgtggccgccaaggattcgcgagatctgca 1657845
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
||||||| ||||||||||||||||| ||||| || | ||||||||| || ||||||||||
Sbjct: 1657844 gacctctgctgaaggcctggttgaagagcattctggtctggaactcggatacaaacggga 1657785
Query: 235 accaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcatagcctc 294
||||||||||||| |||||||||||||| | ||| | ||||||||||||||||| || |
Sbjct: 1657784 accaagcgaggaacgcgatcggggtgaagagcaggagccccatgatgatctcatatcccc 1657725
Query: 295 gggcaagcgccttgaccgatcccca 319
||||||||||||| |||||||||
Sbjct: 1657724 tcgcaagcgccttgatcgatcccca 1657700
Score = 182 bits (92), Expect = 2e-043
Identities = 155/176 (88%)
Strand = Plus / Minus
Query: 366 agcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtc 425
|||| |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 1657575 agcagaccccagccagttggcatgaaggcaagaatgcaaacaaagatgtcctggactgtc 1657516
Query: 426 atgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcagcccc 485
|| || |||||||||||||||||||| || || |||||||| ||||| ||||||| ||||
Sbjct: 1657515 atatgagggattgctatcaagattataatgatggagataaatgttataaatatcaacccc 1657456
Query: 486 ttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|| |||| |||||||||||| ||||| || || |||||||||| ||| ||||||||
Sbjct: 1657455 ttaatcaaccggaacacaagttggaagtccgcgctgaatttccgcctcccaactga 1657400
Score = 129 bits (65), Expect = 3e-027
Identities = 138/164 (84%)
Strand = Plus / Minus
Query: 597 accagaacgctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatactggtaa 656
||||| || ||||| ||||| |||| |||||||| ||||||||||||||||| |||||
Sbjct: 1656951 accaggacactctttgtgtgtttggttatgttcaagtgataaacaagaccatattggtag 1656892
Query: 657 ataaagaagcgcaacgaaagcactatttcaagaacagtgccacgctttccagaatgccta 716
|||||||||||||| | |||||||||||| |||||| | |||||||| ||||||| |
Sbjct: 1656891 ataaagaagcgcaatgcaagcactatttcgagaacaattccacgcttcccagaatatttt 1656832
Query: 717 agannctcctgctctttttcccaccatgactnncancttttctc 760
| | |||||||||||| ||||||||||||| || ||||||||
Sbjct: 1656831 ataggctcctgctctttctcccaccatgactcccaacttttctc 1656788
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 208 bits (105), Expect = 4e-051
Identities = 180/205 (87%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||||| ||| |||||||||||||| ||||| ||||| || || |||||||
Sbjct: 22451810 actccttgttccgtgtagctcggtctttcttgtggccgccaaggattcgcgagatctgca 22451751
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
||||||| ||||||||||||||||| ||||| || | ||||||||| || ||||||||||
Sbjct: 22451750 gacctctgctgaaggcctggttgaagagcattctggtctggaactcggatacaaacggga 22451691
Query: 235 accaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcatagcctc 294
||||||||||||| |||||||||||||| | ||| | ||||||||||||||||| || |
Sbjct: 22451690 accaagcgaggaacgcgatcggggtgaagagcaggagccccatgatgatctcatatcccc 22451631
Query: 295 gggcaagcgccttgaccgatcccca 319
||||||||||||| |||||||||
Sbjct: 22451630 tcgcaagcgccttgatcgatcccca 22451606
Score = 182 bits (92), Expect = 2e-043
Identities = 155/176 (88%)
Strand = Plus / Minus
Query: 366 agcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtc 425
|||| |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 22451481 agcagaccccagccagttggcatgaaggcaagaatgcaaacaaagatgtcctggactgtc 22451422
Query: 426 atgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcagcccc 485
|| || |||||||||||||||||||| || || |||||||| ||||| ||||||| ||||
Sbjct: 22451421 atatgagggattgctatcaagattataatgatggagataaatgttataaatatcaacccc 22451362
Query: 486 ttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|| |||| |||||||||||| ||||| || || |||||||||| ||| ||||||||
Sbjct: 22451361 ttaatcaaccggaacacaagttggaagtccgcgctgaatttccgcctcccaactga 22451306
Score = 129 bits (65), Expect = 3e-027
Identities = 138/164 (84%)
Strand = Plus / Minus
Query: 597 accagaacgctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatactggtaa 656
||||| || ||||| ||||| |||| |||||||| ||||||||||||||||| |||||
Sbjct: 22450857 accaggacactctttgtgtgtttggttatgttcaagtgataaacaagaccatattggtag 22450798
Query: 657 ataaagaagcgcaacgaaagcactatttcaagaacagtgccacgctttccagaatgccta 716
|||||||||||||| | |||||||||||| |||||| | |||||||| ||||||| |
Sbjct: 22450797 ataaagaagcgcaatgcaagcactatttcgagaacaattccacgcttcccagaatatttt 22450738
Query: 717 agannctcctgctctttttcccaccatgactnncancttttctc 760
| | |||||||||||| ||||||||||||| || ||||||||
Sbjct: 22450737 ataggctcctgctctttctcccaccatgactcccaacttttctc 22450694
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 208 bits (105), Expect = 4e-051
Identities = 180/205 (87%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||||| ||| |||||||||||||| ||||| ||||| || || |||||||
Sbjct: 35904874 actccttgttccgtgtagctcggtctttcttgtggccgccaaggattcgcgagatctgca 35904815
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
||||||| ||||||||||||||||| ||||| || | ||||||||| || ||||||||||
Sbjct: 35904814 gacctctgctgaaggcctggttgaagagcattctggtctggaactcggatacaaacggga 35904755
Query: 235 accaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcatagcctc 294
||||||||||||| |||||||||||||| | ||| | ||||||||||||||||| || |
Sbjct: 35904754 accaagcgaggaacgcgatcggggtgaagagcaggagccccatgatgatctcatatcccc 35904695
Query: 295 gggcaagcgccttgaccgatcccca 319
||||||||||||| |||||||||
Sbjct: 35904694 tcgcaagcgccttgatcgatcccca 35904670
Score = 182 bits (92), Expect = 2e-043
Identities = 155/176 (88%)
Strand = Plus / Minus
Query: 366 agcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtc 425
|||| |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 35904545 agcagaccccagccagttggcatgaaggcaagaatgcaaacaaagatgtcctggactgtc 35904486
Query: 426 atgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcagcccc 485
|| || |||||||||||||||||||| || || |||||||| ||||| ||||||| ||||
Sbjct: 35904485 atatgagggattgctatcaagattataatgatggagataaatgttataaatatcaacccc 35904426
Query: 486 ttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|| |||| |||||||||||| ||||| || || |||||||||| ||| ||||||||
Sbjct: 35904425 ttaatcaaccggaacacaagttggaagtccgcgctgaatttccgcctcccaactga 35904370
Score = 129 bits (65), Expect = 3e-027
Identities = 138/164 (84%)
Strand = Plus / Minus
Query: 597 accagaacgctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatactggtaa 656
||||| || ||||| ||||| |||| |||||||| ||||||||||||||||| |||||
Sbjct: 35903921 accaggacactctttgtgtgtttggttatgttcaagtgataaacaagaccatattggtag 35903862
Query: 657 ataaagaagcgcaacgaaagcactatttcaagaacagtgccacgctttccagaatgccta 716
|||||||||||||| | |||||||||||| |||||| | |||||||| ||||||| |
Sbjct: 35903861 ataaagaagcgcaatgcaagcactatttcgagaacaattccacgcttcccagaatatttt 35903802
Query: 717 agannctcctgctctttttcccaccatgactnncancttttctc 760
| | |||||||||||| ||||||||||||| || ||||||||
Sbjct: 35903801 ataggctcctgctctttctcccaccatgactcccaacttttctc 35903758
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 208 bits (105), Expect = 4e-051
Identities = 180/205 (87%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||||| ||| |||||||||||||| ||||| ||||| || || |||||||
Sbjct: 35822631 actccttgttccgtgtagctcggtctttcttgtggccgccaaggattcgcgagatctgca 35822572
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
||||||| ||||||||||||||||| ||||| || | ||||||||| || ||||||||||
Sbjct: 35822571 gacctctgctgaaggcctggttgaagagcattctggtctggaactcggatacaaacggga 35822512
Query: 235 accaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcatagcctc 294
||||||||||||| |||||||||||||| | ||| | ||||||||||||||||| || |
Sbjct: 35822511 accaagcgaggaacgcgatcggggtgaagagcaggagccccatgatgatctcatatcccc 35822452
Query: 295 gggcaagcgccttgaccgatcccca 319
||||||||||||| |||||||||
Sbjct: 35822451 tcgcaagcgccttgatcgatcccca 35822427
Score = 182 bits (92), Expect = 2e-043
Identities = 155/176 (88%)
Strand = Plus / Minus
Query: 366 agcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtc 425
|||| |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 35822302 agcagaccccagccagttggcatgaaggcaagaatgcaaacaaagatgtcctggactgtc 35822243
Query: 426 atgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcagcccc 485
|| || |||||||||||||||||||| || || |||||||| ||||| ||||||| ||||
Sbjct: 35822242 atatgagggattgctatcaagattataatgatggagataaatgttataaatatcaacccc 35822183
Query: 486 ttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|| |||| |||||||||||| ||||| || || |||||||||| ||| ||||||||
Sbjct: 35822182 ttaatcaaccggaacacaagttggaagtccgcgctgaatttccgcctcccaactga 35822127
Score = 129 bits (65), Expect = 3e-027
Identities = 138/164 (84%)
Strand = Plus / Minus
Query: 597 accagaacgctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatactggtaa 656
||||| || ||||| ||||| |||| |||||||| ||||||||||||||||| |||||
Sbjct: 35821678 accaggacactctttgtgtgtttggttatgttcaagtgataaacaagaccatattggtag 35821619
Query: 657 ataaagaagcgcaacgaaagcactatttcaagaacagtgccacgctttccagaatgccta 716
|||||||||||||| | |||||||||||| |||||| | |||||||| ||||||| |
Sbjct: 35821618 ataaagaagcgcaatgcaagcactatttcgagaacaattccacgcttcccagaatatttt 35821559
Query: 717 agannctcctgctctttttcccaccatgactnncancttttctc 760
| | |||||||||||| ||||||||||||| || ||||||||
Sbjct: 35821558 ataggctcctgctctttctcccaccatgactcccaacttttctc 35821515
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 149 bits (75), Expect = 3e-033
Identities = 162/191 (84%)
Strand = Plus / Plus
Query: 135 cggtctttcttgtgtccgcctaggatacgagaaatctgcagacctctactgaaggcctgg 194
|||||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||||
Sbjct: 155223 cggtctttcttgtgcccgccaaggatacgggagatctgcagacctctgctgaaggcctgg 155282
Query: 195 ttgaacagcatccttggctggaactccgaaacaaacgggaaccaagcgaggaatgcgatc 254
||||| |||||||| | ||||||||| || || || || |||||||| ||||| || ||
Sbjct: 155283 ttgaagagcatcctggtctggaactcggacacgaaaggaaaccaagcaaggaacgctatg 155342
Query: 255 ggggtgaacaacagcaagcccatgatgatctcatagcctcgggcaagcgccttgaccgat 314
|| ||||| ||||| | ||||| | |||||||||||| |||||||| ||||||| |||
Sbjct: 155343 ggtgtgaataacaggagtcccattaggatctcatagccccgggcaagagccttgattgat 155402
Query: 315 ccccatagccc 325
||||| |||||
Sbjct: 155403 ccccaaagccc 155413
Score = 143 bits (72), Expect = 2e-031
Identities = 159/188 (84%)
Strand = Plus / Plus
Query: 362 cagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaac 421
||||||||| |||||||||||||||||||| |||||||||||||| ||||| || ||||
Sbjct: 155548 cagaagcaagccccatccagttggcatgaaagcaaggatgcaaacgaagatatcaagaac 155607
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
||||||||| ||||| || || || || | | ||| | || ||| ||||||||||| ||
Sbjct: 155608 tgtcatgtgagggatggcaattaatatcacaacaatggcgacaaatgttatgaatataag 155667
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|||||||||| |||||| |||||||||||||| |||||||| ||||||| || |||||
Sbjct: 155668 gcccttgatcaaccggaagacaagctggaactccgcactgaacctcctcctaccgactga 155727
Query: 542 tacagtct 549
|||||||
Sbjct: 155728 aacagtct 155735
Score = 105 bits (53), Expect = 4e-020
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 627 ttcaaatgataaacaagaccatactggtaaataaagaagcgcaacgaaagcactatttca 686
||||||||||| ||||| ||||| ||||| | |||||||||||||| |||| ||||||
Sbjct: 156047 ttcaaatgatacacaagcccatattggtagacaaagaagcgcaacgcgagcagaatttca 156106
Query: 687 agaacagtgccacgctttccagaatgcctaagannctcctgctctttttcccaccatga 745
|||| ||| |||||||||||||| | | |||| ||||||||||||||||||||||||
Sbjct: 156107 agaatagtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatga 156165
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 149 bits (75), Expect = 3e-033
Identities = 162/191 (84%)
Strand = Plus / Plus
Query: 135 cggtctttcttgtgtccgcctaggatacgagaaatctgcagacctctactgaaggcctgg 194
|||||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||||
Sbjct: 155223 cggtctttcttgtgcccgccaaggatacgggagatctgcagacctctgctgaaggcctgg 155282
Query: 195 ttgaacagcatccttggctggaactccgaaacaaacgggaaccaagcgaggaatgcgatc 254
||||| |||||||| | ||||||||| || || || || |||||||| ||||| || ||
Sbjct: 155283 ttgaagagcatcctggtctggaactcggacacgaaaggaaaccaagcaaggaacgctatg 155342
Query: 255 ggggtgaacaacagcaagcccatgatgatctcatagcctcgggcaagcgccttgaccgat 314
|| ||||| ||||| | ||||| | |||||||||||| |||||||| ||||||| |||
Sbjct: 155343 ggtgtgaataacaggagtcccattaggatctcatagccccgggcaagagccttgattgat 155402
Query: 315 ccccatagccc 325
||||| |||||
Sbjct: 155403 ccccaaagccc 155413
Score = 143 bits (72), Expect = 2e-031
Identities = 159/188 (84%)
Strand = Plus / Plus
Query: 362 cagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaac 421
||||||||| |||||||||||||||||||| |||||||||||||| ||||| || ||||
Sbjct: 155548 cagaagcaagccccatccagttggcatgaaagcaaggatgcaaacgaagatatcaagaac 155607
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
||||||||| ||||| || || || || | | ||| | || ||| ||||||||||| ||
Sbjct: 155608 tgtcatgtgagggatggcaattaatatcacaacaatggcgacaaatgttatgaatataag 155667
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|||||||||| |||||| |||||||||||||| |||||||| ||||||| || |||||
Sbjct: 155668 gcccttgatcaaccggaagacaagctggaactccgcactgaacctcctcctaccgactga 155727
Query: 542 tacagtct 549
|||||||
Sbjct: 155728 aacagtct 155735
Score = 105 bits (53), Expect = 4e-020
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 627 ttcaaatgataaacaagaccatactggtaaataaagaagcgcaacgaaagcactatttca 686
||||||||||| ||||| ||||| ||||| | |||||||||||||| |||| ||||||
Sbjct: 156047 ttcaaatgatacacaagcccatattggtagacaaagaagcgcaacgcgagcagaatttca 156106
Query: 687 agaacagtgccacgctttccagaatgcctaagannctcctgctctttttcccaccatga 745
|||| ||| |||||||||||||| | | |||| ||||||||||||||||||||||||
Sbjct: 156107 agaatagtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatga 156165
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0069C14
Length = 150579
Score = 149 bits (75), Expect = 3e-033
Identities = 162/191 (84%)
Strand = Plus / Plus
Query: 135 cggtctttcttgtgtccgcctaggatacgagaaatctgcagacctctactgaaggcctgg 194
|||||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||||
Sbjct: 16425 cggtctttcttgtgcccgccaaggatacgggagatctgcagacctctgctgaaggcctgg 16484
Query: 195 ttgaacagcatccttggctggaactccgaaacaaacgggaaccaagcgaggaatgcgatc 254
||||| |||||||| | ||||||||| || || || || |||||||| ||||| || ||
Sbjct: 16485 ttgaagagcatcctggtctggaactcggacacgaaaggaaaccaagcaaggaacgctatg 16544
Query: 255 ggggtgaacaacagcaagcccatgatgatctcatagcctcgggcaagcgccttgaccgat 314
|| ||||| ||||| | ||||| | |||||||||||| |||||||| ||||||| |||
Sbjct: 16545 ggtgtgaataacaggagtcccattaggatctcatagccccgggcaagagccttgattgat 16604
Query: 315 ccccatagccc 325
||||| |||||
Sbjct: 16605 ccccaaagccc 16615
Score = 143 bits (72), Expect = 2e-031
Identities = 159/188 (84%)
Strand = Plus / Plus
Query: 362 cagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaac 421
||||||||| |||||||||||||||||||| |||||||||||||| ||||| || ||||
Sbjct: 16750 cagaagcaagccccatccagttggcatgaaagcaaggatgcaaacgaagatatcaagaac 16809
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
||||||||| ||||| || || || || | | ||| | || ||| ||||||||||| ||
Sbjct: 16810 tgtcatgtgagggatggcaattaatatcacaacaatggcgacaaatgttatgaatataag 16869
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|||||||||| |||||| |||||||||||||| |||||||| ||||||| || |||||
Sbjct: 16870 gcccttgatcaaccggaagacaagctggaactccgcactgaacctcctcctaccgactga 16929
Query: 542 tacagtct 549
|||||||
Sbjct: 16930 aacagtct 16937
Score = 105 bits (53), Expect = 4e-020
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 627 ttcaaatgataaacaagaccatactggtaaataaagaagcgcaacgaaagcactatttca 686
||||||||||| ||||| ||||| ||||| | |||||||||||||| |||| ||||||
Sbjct: 17249 ttcaaatgatacacaagcccatattggtagacaaagaagcgcaacgcgagcagaatttca 17308
Query: 687 agaacagtgccacgctttccagaatgcctaagannctcctgctctttttcccaccatga 745
|||| ||| |||||||||||||| | | |||| ||||||||||||||||||||||||
Sbjct: 17309 agaatagtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatga 17367
>gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014975, whole
genome shotgun sequence
Length = 9397
Score = 149 bits (75), Expect = 3e-033
Identities = 162/191 (84%)
Strand = Plus / Minus
Query: 135 cggtctttcttgtgtccgcctaggatacgagaaatctgcagacctctactgaaggcctgg 194
|||||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||||
Sbjct: 5294 cggtctttcttgtgcccgccaaggatacgggagatctgcagacctctgctgaaggcctgg 5235
Query: 195 ttgaacagcatccttggctggaactccgaaacaaacgggaaccaagcgaggaatgcgatc 254
||||| |||||||| | ||||||||| || || || || |||||||| ||||| || ||
Sbjct: 5234 ttgaagagcatcctggtctggaactcggacacgaaaggaaaccaagcaaggaacgctatg 5175
Query: 255 ggggtgaacaacagcaagcccatgatgatctcatagcctcgggcaagcgccttgaccgat 314
|| ||||| ||||| | ||||| | |||||||||||| |||||||| ||||||| |||
Sbjct: 5174 ggtgtgaataacaggagtcccattaggatctcatagccccgggcaagagccttgattgat 5115
Query: 315 ccccatagccc 325
||||| |||||
Sbjct: 5114 ccccaaagccc 5104
Score = 143 bits (72), Expect = 2e-031
Identities = 159/188 (84%)
Strand = Plus / Minus
Query: 362 cagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaac 421
||||||||| |||||||||||||||||||| |||||||||||||| ||||| || ||||
Sbjct: 4969 cagaagcaagccccatccagttggcatgaaagcaaggatgcaaacgaagatatcaagaac 4910
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
||||||||| ||||| || || || || | | ||| | || ||| ||||||||||| ||
Sbjct: 4909 tgtcatgtgagggatggcaattaatatcacaacaatggcgacaaatgttatgaatataag 4850
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|||||||||| |||||| |||||||||||||| |||||||| ||||||| || |||||
Sbjct: 4849 gcccttgatcaaccggaagacaagctggaactccgcactgaacctcctcctaccgactga 4790
Query: 542 tacagtct 549
|||||||
Sbjct: 4789 aacagtct 4782
Score = 105 bits (53), Expect = 4e-020
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 627 ttcaaatgataaacaagaccatactggtaaataaagaagcgcaacgaaagcactatttca 686
||||||||||| ||||| ||||| ||||| | |||||||||||||| |||| ||||||
Sbjct: 4470 ttcaaatgatacacaagcccatattggtagacaaagaagcgcaacgcgagcagaatttca 4411
Query: 687 agaacagtgccacgctttccagaatgcctaagannctcctgctctttttcccaccatga 745
|||| ||| |||||||||||||| | | |||| ||||||||||||||||||||||||
Sbjct: 4410 agaatagtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatga 4352
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 149 bits (75), Expect = 3e-033
Identities = 162/191 (84%)
Strand = Plus / Plus
Query: 135 cggtctttcttgtgtccgcctaggatacgagaaatctgcagacctctactgaaggcctgg 194
|||||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||||
Sbjct: 11849881 cggtctttcttgtgcccgccaaggatacgggagatctgcagacctctgctgaaggcctgg 11849940
Query: 195 ttgaacagcatccttggctggaactccgaaacaaacgggaaccaagcgaggaatgcgatc 254
||||| |||||||| | ||||||||| || || || || |||||||| ||||| || ||
Sbjct: 11849941 ttgaagagcatcctggtctggaactcggacacgaaaggaaaccaagcaaggaacgctatg 11850000
Query: 255 ggggtgaacaacagcaagcccatgatgatctcatagcctcgggcaagcgccttgaccgat 314
|| ||||| ||||| | ||||| | |||||||||||| |||||||| ||||||| |||
Sbjct: 11850001 ggtgtgaataacaggagtcccattaggatctcatagccccgggcaagagccttgattgat 11850060
Query: 315 ccccatagccc 325
||||| |||||
Sbjct: 11850061 ccccaaagccc 11850071
Score = 143 bits (72), Expect = 2e-031
Identities = 159/188 (84%)
Strand = Plus / Plus
Query: 362 cagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaac 421
||||||||| |||||||||||||||||||| |||||||||||||| ||||| || ||||
Sbjct: 11850206 cagaagcaagccccatccagttggcatgaaagcaaggatgcaaacgaagatatcaagaac 11850265
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
||||||||| ||||| || || || || | | ||| | || ||| ||||||||||| ||
Sbjct: 11850266 tgtcatgtgagggatggcaattaatatcacaacaatggcgacaaatgttatgaatataag 11850325
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|||||||||| |||||| |||||||||||||| |||||||| ||||||| || |||||
Sbjct: 11850326 gcccttgatcaaccggaagacaagctggaactccgcactgaacctcctcctaccgactga 11850385
Query: 542 tacagtct 549
|||||||
Sbjct: 11850386 aacagtct 11850393
Score = 105 bits (53), Expect = 4e-020
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 627 ttcaaatgataaacaagaccatactggtaaataaagaagcgcaacgaaagcactatttca 686
||||||||||| ||||| ||||| ||||| | |||||||||||||| |||| ||||||
Sbjct: 11850705 ttcaaatgatacacaagcccatattggtagacaaagaagcgcaacgcgagcagaatttca 11850764
Query: 687 agaacagtgccacgctttccagaatgcctaagannctcctgctctttttcccaccatga 745
|||| ||| |||||||||||||| | | |||| ||||||||||||||||||||||||
Sbjct: 11850765 agaatagtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatga 11850823
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 149 bits (75), Expect = 3e-033
Identities = 162/191 (84%)
Strand = Plus / Plus
Query: 135 cggtctttcttgtgtccgcctaggatacgagaaatctgcagacctctactgaaggcctgg 194
|||||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||||
Sbjct: 29548618 cggtctttcttgtgcccgccaaggatacgggagatctgcagacctctgctgaaggcctgg 29548677
Query: 195 ttgaacagcatccttggctggaactccgaaacaaacgggaaccaagcgaggaatgcgatc 254
||||| |||||||| | ||||||||| || || || || |||||||| ||||| || ||
Sbjct: 29548678 ttgaagagcatcctggtctggaactcggacacgaaaggaaaccaagcaaggaacgctatg 29548737
Query: 255 ggggtgaacaacagcaagcccatgatgatctcatagcctcgggcaagcgccttgaccgat 314
|| ||||| ||||| | ||||| | |||||||||||| |||||||| ||||||| |||
Sbjct: 29548738 ggtgtgaataacaggagtcccattaggatctcatagccccgggcaagagccttgattgat 29548797
Query: 315 ccccatagccc 325
||||| |||||
Sbjct: 29548798 ccccaaagccc 29548808
Score = 143 bits (72), Expect = 2e-031
Identities = 159/188 (84%)
Strand = Plus / Plus
Query: 362 cagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaac 421
||||||||| |||||||||||||||||||| |||||||||||||| ||||| || ||||
Sbjct: 29548943 cagaagcaagccccatccagttggcatgaaagcaaggatgcaaacgaagatatcaagaac 29549002
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
||||||||| ||||| || || || || | | ||| | || ||| ||||||||||| ||
Sbjct: 29549003 tgtcatgtgagggatggcaattaatatcacaacaatggcgacaaatgttatgaatataag 29549062
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|||||||||| |||||| |||||||||||||| |||||||| ||||||| || |||||
Sbjct: 29549063 gcccttgatcaaccggaagacaagctggaactccgcactgaacctcctcctaccgactga 29549122
Query: 542 tacagtct 549
|||||||
Sbjct: 29549123 aacagtct 29549130
Score = 105 bits (53), Expect = 4e-020
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 627 ttcaaatgataaacaagaccatactggtaaataaagaagcgcaacgaaagcactatttca 686
||||||||||| ||||| ||||| ||||| | |||||||||||||| |||| ||||||
Sbjct: 29549442 ttcaaatgatacacaagcccatattggtagacaaagaagcgcaacgcgagcagaatttca 29549501
Query: 687 agaacagtgccacgctttccagaatgcctaagannctcctgctctttttcccaccatga 745
|||| ||| |||||||||||||| | | |||| ||||||||||||||||||||||||
Sbjct: 29549502 agaatagtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatga 29549560
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 492 agccggaacacaagctggaactctgcactgaatttc 527
|||||||||| |||||||| |||||||||||||||
Sbjct: 3912358 agccggaacatcagctggaagtctgcactgaatttc 3912393
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||||||||| |||| ||| | ||||||||| || || || ||||||||
Sbjct: 3910637 ctgaaggcctggttgaagagcagcctcgtctggaactcggagacgaaggggaacca 3910692
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 149 bits (75), Expect = 3e-033
Identities = 162/191 (84%)
Strand = Plus / Plus
Query: 135 cggtctttcttgtgtccgcctaggatacgagaaatctgcagacctctactgaaggcctgg 194
|||||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||||
Sbjct: 30517862 cggtctttcttgtgcccgccaaggatacgggagatctgcagacctctgctgaaggcctgg 30517921
Query: 195 ttgaacagcatccttggctggaactccgaaacaaacgggaaccaagcgaggaatgcgatc 254
||||| |||||||| | ||||||||| || || || || |||||||| ||||| || ||
Sbjct: 30517922 ttgaagagcatcctggtctggaactcggacacgaaaggaaaccaagcaaggaacgctatg 30517981
Query: 255 ggggtgaacaacagcaagcccatgatgatctcatagcctcgggcaagcgccttgaccgat 314
|| ||||| ||||| | ||||| | |||||||||||| |||||||| ||||||| |||
Sbjct: 30517982 ggtgtgaataacaggagtcccattaggatctcatagccccgggcaagagccttgattgat 30518041
Query: 315 ccccatagccc 325
||||| |||||
Sbjct: 30518042 ccccaaagccc 30518052
Score = 143 bits (72), Expect = 2e-031
Identities = 159/188 (84%)
Strand = Plus / Plus
Query: 362 cagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaac 421
||||||||| |||||||||||||||||||| |||||||||||||| ||||| || ||||
Sbjct: 30518187 cagaagcaagccccatccagttggcatgaaagcaaggatgcaaacgaagatatcaagaac 30518246
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
||||||||| ||||| || || || || | | ||| | || ||| ||||||||||| ||
Sbjct: 30518247 tgtcatgtgagggatggcaattaatatcacaacaatggcgacaaatgttatgaatataag 30518306
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|||||||||| |||||| |||||||||||||| |||||||| ||||||| || |||||
Sbjct: 30518307 gcccttgatcaaccggaagacaagctggaactccgcactgaacctcctcctaccgactga 30518366
Query: 542 tacagtct 549
|||||||
Sbjct: 30518367 aacagtct 30518374
Score = 105 bits (53), Expect = 4e-020
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 627 ttcaaatgataaacaagaccatactggtaaataaagaagcgcaacgaaagcactatttca 686
||||||||||| ||||| ||||| ||||| | |||||||||||||| |||| ||||||
Sbjct: 30518686 ttcaaatgatacacaagcccatattggtagacaaagaagcgcaacgcgagcagaatttca 30518745
Query: 687 agaacagtgccacgctttccagaatgcctaagannctcctgctctttttcccaccatga 745
|||| ||| |||||||||||||| | | |||| ||||||||||||||||||||||||
Sbjct: 30518746 agaatagtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatga 30518804
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 492 agccggaacacaagctggaactctgcactgaatttc 527
|||||||||| |||||||| |||||||||||||||
Sbjct: 4079779 agccggaacatcagctggaagtctgcactgaatttc 4079814
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||||||||| |||| ||| | ||||||||| || || || ||||||||
Sbjct: 4077985 ctgaaggcctggttgaagagcagcctcgtctggaactcggagacgaaggggaacca 4078040
>gb|AQ292177.1|AQ292177 nbxb0042J10r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0042J10r, DNA sequence
Length = 800
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||| ||||| |||| |||| |||||||| ||| ||||| ||||||||
Sbjct: 290 ctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaacca 345
>dbj|AG024945.1| Oryza sativa (japonica cultivar-group) DNA, clone:T04020T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0563, genomic survey sequence
Length = 242
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 492 agccggaacacaagctggaactctgcactgaatttc 527
|||||||||| |||||||| |||||||||||||||
Sbjct: 81 agccggaacatcagctggaagtctgcactgaatttc 46
>dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0499E08, ***
SEQUENCING IN PROGRESS ***
Length = 85150
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 492 agccggaacacaagctggaactctgcactgaatttc 527
|||||||||| |||||||| |||||||||||||||
Sbjct: 40569 agccggaacatcagctggaagtctgcactgaatttc 40604
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||||||||| |||| ||| | ||||||||| || || || ||||||||
Sbjct: 38775 ctgaaggcctggttgaagagcagcctcgtctggaactcggagacgaaggggaacca 38830
>emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 140383
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||| ||||| |||| |||| |||||||| ||| ||||| ||||||||
Sbjct: 24707 ctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaacca 24762
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||| ||||| |||| |||| |||||||| ||| ||||| ||||||||
Sbjct: 889136 ctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaacca 889191
>gb|AACV01013161.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013161, whole
genome shotgun sequence
Length = 8989
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||||||||| |||| ||| | ||||||||| || || || ||||||||
Sbjct: 1406 ctgaaggcctggttgaagagcagcctcgtctggaactcggagacgaaggggaacca 1351
>gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013162, whole
genome shotgun sequence
Length = 37554
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 492 agccggaacacaagctggaactctgcactgaatttc 527
|||||||||| |||||||| |||||||||||||||
Sbjct: 37289 agccggaacatcagctggaagtctgcactgaatttc 37254
>gb|AACV01025408.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025408, whole
genome shotgun sequence
Length = 3895
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||| ||||| |||| |||| |||||||| ||| ||||| ||||||||
Sbjct: 2616 ctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaacca 2561
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
Length = 136159
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 492 agccggaacacaagctggaactctgcactgaatttc 527
|||||||||| |||||||| |||||||||||||||
Sbjct: 13038 agccggaacatcagctggaagtctgcactgaatttc 13073
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||||||||| |||| ||| | ||||||||| || || || ||||||||
Sbjct: 11244 ctgaaggcctggttgaagagcagcctcgtctggaactcggagacgaaggggaacca 11299
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0019L07
Length = 131650
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 492 agccggaacacaagctggaactctgcactgaatttc 527
|||||||||| |||||||| |||||||||||||||
Sbjct: 123432 agccggaacatcagctggaagtctgcactgaatttc 123467
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||||||||| |||| ||| | ||||||||| || || || ||||||||
Sbjct: 121638 ctgaaggcctggttgaagagcagcctcgtctggaactcggagacgaaggggaacca 121693
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome
Length = 490520
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||| ||||| |||| || | |||||||||||| ||||| ||||||||
Sbjct: 454607 ctgaaggcctgattgaatagcaatctcgtctggaactccgagacaaatgggaacca 454552
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||| ||||| |||| || | |||||||||||| ||||| ||||||||
Sbjct: 373520 ctgaaggcctgattgaatagcaatctcgtctggaactccgagacaaatgggaacca 373465
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||| ||||| |||| |||| |||||||| ||| ||||| ||||||||
Sbjct: 1716347 ctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaacca 1716402
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 492 agccggaacacaagctggaactctgcactgaatttc 527
|||||||||| |||||||| |||||||||||||||
Sbjct: 3912358 agccggaacatcagctggaagtctgcactgaatttc 3912393
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||||||||| |||| ||| | ||||||||| || || || ||||||||
Sbjct: 3910637 ctgaaggcctggttgaagagcagcctcgtctggaactcggagacgaaggggaacca 3910692
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||| ||||| |||| |||| |||||||| ||| ||||| ||||||||
Sbjct: 20899993 ctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaacca 20900048
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||| ||||| |||| |||| |||||||| ||| ||||| ||||||||
Sbjct: 24717550 ctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaacca 24717605
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaacca 238
||||||||||| ||||| |||| |||| |||||||| ||| ||||| ||||||||
Sbjct: 24645756 ctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaacca 24645811
>dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F01, full
insert sequence
Length = 1923
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 630 aaatgataaacaagaccatactggtaaataaagaagcg 667
||||||||||||| |||||| ||||| || ||||||||
Sbjct: 1077 aaatgataaacaataccatattggtatatcaagaagcg 1040
>gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001413, whole
genome shotgun sequence
Length = 32302
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 630 aaatgataaacaagaccatactggtaaataaagaagcg 667
||||||||||||| |||||| ||||| || ||||||||
Sbjct: 7588 aaatgataaacaataccatattggtatatcaagaagcg 7625
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 630 aaatgataaacaagaccatactggtaaataaagaagcg 667
||||||||||||| |||||| ||||| || ||||||||
Sbjct: 19379340 aaatgataaacaataccatattggtatatcaagaagcg 19379377
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 630 aaatgataaacaagaccatactggtaaataaagaagcg 667
||||||||||||| |||||| ||||| || ||||||||
Sbjct: 5126 aaatgataaacaataccatattggtatatcaagaagcg 5089
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 630 aaatgataaacaagaccatactggtaaataaagaagcg 667
||||||||||||| |||||| ||||| || ||||||||
Sbjct: 2297572 aaatgataaacaataccatattggtatatcaagaagcg 2297609
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1619_F12
Length = 133028
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 630 aaatgataaacaagaccatactggtaaataaagaagcg 667
||||||||||||| |||||| ||||| || ||||||||
Sbjct: 120244 aaatgataaacaataccatattggtatatcaagaagcg 120281
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1029_F04
Length = 141834
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 630 aaatgataaacaagaccatactggtaaataaagaagcg 667
||||||||||||| |||||| ||||| || ||||||||
Sbjct: 28628 aaatgataaacaataccatattggtatatcaagaagcg 28665
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 630 aaatgataaacaagaccatactggtaaataaagaagcg 667
||||||||||||| |||||| ||||| || ||||||||
Sbjct: 2431003 aaatgataaacaataccatattggtatatcaagaagcg 2431040
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 630 aaatgataaacaagaccatactggtaaataaagaagcg 667
||||||||||||| |||||| ||||| || ||||||||
Sbjct: 19056126 aaatgataaacaataccatattggtatatcaagaagcg 19056163
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 630 aaatgataaacaagaccatactggtaaataaagaagcg 667
||||||||||||| |||||| ||||| || ||||||||
Sbjct: 19300623 aaatgataaacaataccatattggtatatcaagaagcg 19300660
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 856,352
Number of Sequences: 438736
Number of extensions: 856352
Number of successful extensions: 4090
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3842
Number of HSP's gapped (non-prelim): 244
length of query: 830
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 809
effective length of database: 2,791,206,460
effective search space: 2258086026140
effective search space used: 2258086026140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)