BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.1
(867 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB646770.1|CB646770 OSJNEb09G16.r OSJNEb Oryza sativa (j... 262 3e-067
gb|CB646880.1|CB646880 OSJNEb09J04.r OSJNEb Oryza sativa (j... 262 3e-067
dbj|AK061675.1| Oryza sativa (japonica cultivar-group) cDNA... 262 3e-067
dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA... 262 3e-067
dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA... 262 3e-067
ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Oz... 252 3e-064
gb|AU181264.1|AU181264 AU181264 Rice callus (2001) Oryza sa... 178 3e-042
gb|CO435743.1|CO435743 OsMR809 5MT resistant rice mutant cD... 178 3e-042
gb|CA755466.1|CA755466 BR030021000_PLATE_B11_82_092.ab1 OA ... 176 1e-041
gb|CB663613.1|CB663613 OSJNEd08M21.r OSJNEd Oryza sativa (j... 176 1e-041
dbj|AK060907.1| Oryza sativa (japonica cultivar-group) cDNA... 176 1e-041
dbj|AK065274.1| Oryza sativa (japonica cultivar-group) cDNA... 176 1e-041
dbj|AK104539.1| Oryza sativa (japonica cultivar-group) cDNA... 176 1e-041
dbj|AK119248.1| Oryza sativa (japonica cultivar-group) cDNA... 176 1e-041
dbj|AK122078.1| Oryza sativa (japonica cultivar-group) cDNA... 176 1e-041
gb|C98487.1|C98487 C98487 Rice panicle at flowering stage O... 157 1e-035
gb|AACV01000677.1| Oryza sativa (japonica cultivar-group) c... 139 3e-030
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 139 3e-030
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 139 3e-030
dbj|AP000836.1| Oryza sativa (japonica cultivar-group) geno... 139 3e-030
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 139 3e-030
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 139 3e-030
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 139 3e-030
gb|AU225181.1|AU225181 AU225181 Oryza sativa Koshihikari pi... 137 1e-029
gb|CV733900.1|CV733900 FLO--09-A09.b1 Rice flower lambda ph... 137 1e-029
gb|D23328.1|D23328 RICC2623A Rice callus Oryza sativa (japo... 127 1e-026
gb|CF323377.1|CF323377 HDN--03-L03.g1 OsHDAC1-overexpressin... 100 2e-018
gb|AACV01008615.1| Oryza sativa (japonica cultivar-group) c... 70 2e-009
ref|NT_080056.2| Oryza sativa (japonica cultivar-group) 70 2e-009
gb|CH401184.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromoso... 70 2e-009
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
gb|AQ954566.1|AQ954566 nbeb0071M13r CUGI Rice BAC Library (... 66 3e-008
gb|AACV01000673.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
dbj|AP000837.1| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|CF325923.1|CF325923 JMT1--04-J16.g1 AtJMT-overexpressing... 62 5e-007
gb|CB674255.1|CB674255 OSJNEe09D12.r OSJNEe Oryza sativa (j... 56 3e-005
gb|CB677346.1|CB677346 OSJNEe14C23.f OSJNEe Oryza sativa (j... 56 3e-005
dbj|AK101842.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
gb|AY323483.1| Oryza sativa (japonica cultivar-group) zwill... 56 3e-005
dbj|AP006447.4| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
dbj|AP006465.4| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|AACV01015684.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
ref|XM_477327.1| Oryza sativa (japonica cultivar-group), mRNA 56 3e-005
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|AU068544.1|AU068544 AU068544 Rice callus Oryza sativa (j... 52 5e-004
dbj|AP005727.3| Oryza sativa (japonica cultivar-group) geno... 46 0.032
dbj|AP005892.3| Oryza sativa (japonica cultivar-group) geno... 46 0.032
gb|AACV01019190.1| Oryza sativa (japonica cultivar-group) c... 46 0.032
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 46 0.032
gb|CH401233.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.032
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.032
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 46 0.032
gb|AQ688726.1|AQ688726 nbxb0078O13f CUGI Rice BAC Library O... 44 0.12
gb|AC137607.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
ref|NT_107122.1| Oryza sativa (japonica cultivar-group) 44 0.12
gb|AC137609.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|AACV01011472.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
gb|AACV01022953.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
ref|NT_107228.1| Oryza sativa (japonica cultivar-group) 44 0.12
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CH401198.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.12
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.12
gb|AC135561.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|AC145327.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
>gb|CB646770.1|CB646770 OSJNEb09G16.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09G16 3', mRNA sequence
Length = 678
Score = 262 bits (132), Expect = 3e-067
Identities = 318/380 (83%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct: 498 actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac 439
Query: 265 gctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagataggc 324
|||||||||||||| ||||| ||||| || || ||||| ||||| ||||| |||||||||
Sbjct: 438 gctggaatgattggaactacaaggcctacacattatcatatccttcatgatgagataggc 379
Query: 325 ttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagc 384
||| | |||| || || |||||| |||| ||||| || || || || ||||| ||||||
Sbjct: 378 ttctctgctgacgatcttcaggagttggtccactccctttcctatgtctaccagaggagc 319
Query: 385 acaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggtt 444
|| |||||||||||||| ||||| ||||| |||||||| || || || || || |||||
Sbjct: 318 actacagccatatcagtcgttgcacccatttgctacgcgcatctcgctgctgctcaggtc 259
Query: 445 gggcagttcataaagttcgacgagatgtcggagacttcatctagccatggggggcatacc 504
| |||||||| ||||||||||||||||||||||| || || |||||||| || ||||||
Sbjct: 258 agccagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggccatacc 199
Query: 505 tcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctcc 564
||||||||||||| || || | |||||||| || |||||| | ||||| |||||||||
Sbjct: 198 tcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcaggagctcc 139
Query: 565 atgttcttctgctgagcagc 584
||||||||||||||||||||
Sbjct: 138 atgttcttctgctgagcagc 119
>gb|CB646880.1|CB646880 OSJNEb09J04.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09J04 3', mRNA sequence
Length = 776
Score = 262 bits (132), Expect = 3e-067
Identities = 318/380 (83%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct: 579 actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac 520
Query: 265 gctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagataggc 324
|||||||||||||| ||||| ||||| || || ||||| ||||| ||||| |||||||||
Sbjct: 519 gctggaatgattggaactacaaggcctacacattatcatatccttcatgatgagataggc 460
Query: 325 ttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagc 384
||| | |||| || || |||||| |||| ||||| || || || || ||||| ||||||
Sbjct: 459 ttctctgctgacgatcttcaggagttggtccactccctttcctatgtctaccagaggagc 400
Query: 385 acaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggtt 444
|| |||||||||||||| ||||| ||||| |||||||| || || || || || |||||
Sbjct: 399 actacagccatatcagtcgttgcacccatttgctacgcgcatctcgctgctgctcaggtc 340
Query: 445 gggcagttcataaagttcgacgagatgtcggagacttcatctagccatggggggcatacc 504
| |||||||| ||||||||||||||||||||||| || || |||||||| || ||||||
Sbjct: 339 agccagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggccatacc 280
Query: 505 tcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctcc 564
||||||||||||| || || | |||||||| || |||||| | ||||| |||||||||
Sbjct: 279 tcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcaggagctcc 220
Query: 565 atgttcttctgctgagcagc 584
||||||||||||||||||||
Sbjct: 219 atgttcttctgctgagcagc 200
>dbj|AK061675.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H03, full
insert sequence
Length = 772
Score = 262 bits (132), Expect = 3e-067
Identities = 318/380 (83%)
Strand = Plus / Plus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct: 198 actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac 257
Query: 265 gctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagataggc 324
|||||||||||||| ||||| ||||| || || ||||| ||||| ||||| |||||||||
Sbjct: 258 gctggaatgattggaactacaaggcctacacattatcatatccttcatgatgagataggc 317
Query: 325 ttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagc 384
||| | |||| || || |||||| |||| ||||| || || || || ||||| ||||||
Sbjct: 318 ttctctgctgacgatcttcaggagttggtccactccctttcctatgtctaccagaggagc 377
Query: 385 acaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggtt 444
|| |||||||||||||| ||||| ||||| |||||||| || || || || || |||||
Sbjct: 378 actacagccatatcagtcgttgcacccatttgctacgcgcatctcgctgctgctcaggtc 437
Query: 445 gggcagttcataaagttcgacgagatgtcggagacttcatctagccatggggggcatacc 504
| |||||||| ||||||||||||||||||||||| || || |||||||| || ||||||
Sbjct: 438 agccagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggccatacc 497
Query: 505 tcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctcc 564
||||||||||||| || || | |||||||| || |||||| | ||||| |||||||||
Sbjct: 498 tcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcaggagctcc 557
Query: 565 atgttcttctgctgagcagc 584
||||||||||||||||||||
Sbjct: 558 atgttcttctgctgagcagc 577
>dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E08, full
insert sequence
Length = 3047
Score = 262 bits (132), Expect = 3e-067
Identities = 318/380 (83%)
Strand = Plus / Plus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct: 2499 actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac 2558
Query: 265 gctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagataggc 324
|||||||||||||| ||||| ||||| || || ||||| ||||| ||||| |||||||||
Sbjct: 2559 gctggaatgattggaactacaaggcctacacattatcatatccttcatgatgagataggc 2618
Query: 325 ttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagc 384
||| | |||| || || |||||| |||| ||||| || || || || ||||| ||||||
Sbjct: 2619 ttctctgctgacgatcttcaggagttggtccactccctttcctatgtctaccagaggagc 2678
Query: 385 acaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggtt 444
|| |||||||||||||| ||||| ||||| |||||||| || || || || || |||||
Sbjct: 2679 actacagccatatcagtcgttgcacccatttgctacgcgcatctcgctgctgctcaggtc 2738
Query: 445 gggcagttcataaagttcgacgagatgtcggagacttcatctagccatggggggcatacc 504
| |||||||| ||||||||||||||||||||||| || || |||||||| || ||||||
Sbjct: 2739 agccagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggccatacc 2798
Query: 505 tcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctcc 564
||||||||||||| || || | |||||||| || |||||| | ||||| |||||||||
Sbjct: 2799 tcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcaggagctcc 2858
Query: 565 atgttcttctgctgagcagc 584
||||||||||||||||||||
Sbjct: 2859 atgttcttctgctgagcagc 2878
>dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111L20, full
insert sequence
Length = 3027
Score = 262 bits (132), Expect = 3e-067
Identities = 318/380 (83%)
Strand = Plus / Plus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct: 2489 actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac 2548
Query: 265 gctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagataggc 324
|||||||||||||| ||||| ||||| || || ||||| ||||| ||||| |||||||||
Sbjct: 2549 gctggaatgattggaactacaaggcctacacattatcatatccttcatgatgagataggc 2608
Query: 325 ttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagc 384
||| | |||| || || |||||| |||| ||||| || || || || ||||| ||||||
Sbjct: 2609 ttctctgctgacgatcttcaggagttggtccactccctttcctatgtctaccagaggagc 2668
Query: 385 acaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggtt 444
|| |||||||||||||| ||||| ||||| |||||||| || || || || || |||||
Sbjct: 2669 actacagccatatcagtcgttgcacccatttgctacgcgcatctcgctgctgctcaggtc 2728
Query: 445 gggcagttcataaagttcgacgagatgtcggagacttcatctagccatggggggcatacc 504
| |||||||| ||||||||||||||||||||||| || || |||||||| || ||||||
Sbjct: 2729 agccagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggccatacc 2788
Query: 505 tcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctcc 564
||||||||||||| || || | |||||||| || |||||| | ||||| |||||||||
Sbjct: 2789 tcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcaggagctcc 2848
Query: 565 atgttcttctgctgagcagc 584
||||||||||||||||||||
Sbjct: 2849 atgttcttctgctgagcagc 2868
>ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Ozsa8518 predicted mRNA
Length = 2715
Score = 252 bits (127), Expect = 3e-064
Identities = 313/375 (83%)
Strand = Plus / Plus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct: 2341 actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac 2400
Query: 265 gctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagataggc 324
|||||||||||||| ||||| ||||| || || ||||| ||||| ||||| |||||||||
Sbjct: 2401 gctggaatgattggaactacaaggcctacacattatcatatccttcatgatgagataggc 2460
Query: 325 ttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagc 384
||| | |||| || || |||||| |||| ||||| || || || || ||||| ||||||
Sbjct: 2461 ttctctgctgacgatcttcaggagttggtccactccctttcctatgtctaccagaggagc 2520
Query: 385 acaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggtt 444
|| |||||||||||||| ||||| ||||| |||||||| || || || || || |||||
Sbjct: 2521 actacagccatatcagtcgttgcacccatttgctacgcgcatctcgctgctgctcaggtc 2580
Query: 445 gggcagttcataaagttcgacgagatgtcggagacttcatctagccatggggggcatacc 504
| |||||||| ||||||||||||||||||||||| || || |||||||| || ||||||
Sbjct: 2581 agccagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggccatacc 2640
Query: 505 tcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctcc 564
||||||||||||| || || | |||||||| || |||||| | ||||| |||||||||
Sbjct: 2641 tcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcaggagctcc 2700
Query: 565 atgttcttctgctga 579
|||||||||||||||
Sbjct: 2701 atgttcttctgctga 2715
>gb|AU181264.1|AU181264 AU181264 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C11152, mRNA sequence
Length = 446
Score = 178 bits (90), Expect = 3e-042
Identities = 204/242 (84%)
Strand = Plus / Plus
Query: 343 caggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcagtt 402
|||||| |||| ||||| || || || || ||||| |||||||| ||||||||||||||
Sbjct: 13 caggagttggtccactccctttcctatgtctaccagaggagcactacagccatatcagtc 72
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttc 462
||||| ||||| |||||||| || || || || || ||||| | |||||||| ||||||
Sbjct: 73 gttgcacccatttgctacgcgcatctcgctgctgctcaggtcagccagttcatcaagttc 132
Query: 463 gacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccct 522
||||||||||||||||| || || |||||||| || ||||||||||||||||||| ||
Sbjct: 133 gacgagatgtcggagacgtcgtcgagccatggtggccatacctcggcgggcagcgctccg 192
Query: 523 gtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagca 582
|| | |||||||| || |||||| | ||||| |||||||||||||||||||||||||||
Sbjct: 193 gtgcccgagctgcctcgcctgcataacaaagtcaggagctccatgttcttctgctgagca 252
Query: 583 gc 584
||
Sbjct: 253 gc 254
>gb|CO435743.1|CO435743 OsMR809 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 689
Score = 178 bits (90), Expect = 3e-042
Identities = 255/312 (81%)
Strand = Plus / Minus
Query: 273 gattgggactaccaggccaactcactatcacatcctgcatgacgagataggcttcaatcc 332
|||||| | ||| ||||| || || ||||| ||||| ||||| ||||||||||| | |
Sbjct: 569 gattggaantacaaggcctacacattatcatatccttcatgatgagataggcttntctgc 510
Query: 333 tgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagc 392
||| || || |||||| |||| ||||| || || || || ||||| |||||||| |||||
Sbjct: 509 tgacgatcttcaggagttggtccactccctttcctatgtntaccagaggagcactacagc 450
Query: 393 catatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagtt 452
||||||||| ||||| ||||| |||||||| || || || || || ||||| | |||||
Sbjct: 449 catatcagtcgttgcacccatttgctacgcgcatctcgctgctgctcaggtcagccagtt 390
Query: 453 cataaagttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcggg 512
||| ||||| ||||||||||||||||| || || |||||||| || ||||||||||||||
Sbjct: 389 catcaagttngacgagatgtcggagacgtcgtcgagccatggtggccatacctcggcggg 330
Query: 513 cagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttctt 572
||||| || || | |||||||| || |||||| | ||||| |||||||||||||| ||
Sbjct: 329 cagcgctccggtgcccgagctgcctcgcctgcataacaaagtcaggagctccatgttntt 270
Query: 573 ctgctgagcagc 584
|||||||||||
Sbjct: 269 ntgctgagcagc 258
>gb|CA755466.1|CA755466 BR030021000_PLATE_B11_82_092.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030021000_PLATE_B11_82_092.ab1 similar to ESTs
AU068544(C30430),C98487(E0325),D23445(C2825),, mRNA
sequence
Length = 634
Score = 176 bits (89), Expect = 1e-041
Identities = 256/309 (82%), Gaps = 2/309 (0%)
Strand = Plus / Plus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaattttt-cattcctggaaa 182
||||||||| |||| |||| ||||||||||| || || |||||||| || || ||||
Sbjct: 165 aagttcacagtgattgttgctcagaagaatcatcataccaaattttttcagtc-tggatc 223
Query: 183 gccagataatgttccagccggcactgttgttgacaacaaagtctgtcatccaaggaactt 242
|||||||||||||| | || |||||||| ||||| |||| || ||||||||||| |
Sbjct: 224 tccagataatgttccgccaggtactgttgtggacaaacaagtgtgccatccaaggaatta 283
Query: 243 cgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcactatca 302
|| |||||||||||| | ||||||||||||||||| || || |||||||| || |||||
Sbjct: 284 tgacttctacatgtgtgctcatgctggaatgattggaacgacgaggccaacacattatca 343
Query: 303 catcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgct 362
| ||||| || |||||||| ||| |||||||| ||||||||||| |||||||| ||
Sbjct: 344 tgttctgcacgatgagataggtttctcccctgatgatctgcaggagctagtgcactcact 403
Query: 363 ctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctacgc 422
|||||| ||||| || || ||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 404 ctcttatgtgtatcagagaagcacaacagccatatcagttgttgctccgatttgctatgc 463
Query: 423 ccaccttgc 431
||| |||||
Sbjct: 464 ccatcttgc 472
Score = 46.1 bits (23), Expect = 0.032
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||| ||||||||||||||| | |||||||||
Sbjct: 570 gagctgcctcgcctccatgagaa-gtgaggagctccatggttttctgctga 619
>gb|CB663613.1|CB663613 OSJNEd08M21.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08M21 3', mRNA sequence
Length = 814
Score = 176 bits (89), Expect = 1e-041
Identities = 256/309 (82%), Gaps = 2/309 (0%)
Strand = Plus / Minus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaattttt-cattcctggaaa 182
||||||||| |||| |||| ||||||||||| || || |||||||| || || ||||
Sbjct: 804 aagttcacagtgattgttgctcagaagaatcatcataccaaattttttcagtc-tggatc 746
Query: 183 gccagataatgttccagccggcactgttgttgacaacaaagtctgtcatccaaggaactt 242
|||||||||||||| | || |||||||| ||||| |||| || ||||||||||| |
Sbjct: 745 tccagataatgttccgccaggtactgttgtggacaaacaagtgtgccatccaaggaatta 686
Query: 243 cgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcactatca 302
|| |||||||||||| | ||||||||||||||||| || || |||||||| || |||||
Sbjct: 685 tgacttctacatgtgtgctcatgctggaatgattggaacgacgaggccaacacattatca 626
Query: 303 catcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgct 362
| ||||| || |||||||| ||| |||||||| ||||||||||| |||||||| ||
Sbjct: 625 tgttctgcacgatgagataggtttctcccctgatgatctgcaggagctagtgcactcact 566
Query: 363 ctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctacgc 422
|||||| ||||| || || ||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 565 ctcttatgtgtatcagagaagcacaacagccatatcagttgttgctccgatttgctatgc 506
Query: 423 ccaccttgc 431
||| |||||
Sbjct: 505 ccatcttgc 497
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 399 gagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgctga 349
>dbj|AK060907.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F07, full
insert sequence
Length = 1196
Score = 176 bits (89), Expect = 1e-041
Identities = 256/309 (82%), Gaps = 2/309 (0%)
Strand = Plus / Plus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaattttt-cattcctggaaa 182
||||||||| |||| |||| ||||||||||| || || |||||||| || || ||||
Sbjct: 441 aagttcacagtgattgttgctcagaagaatcatcataccaaattttttcagtc-tggatc 499
Query: 183 gccagataatgttccagccggcactgttgttgacaacaaagtctgtcatccaaggaactt 242
|||||||||||||| | || |||||||| ||||| |||| || ||||||||||| |
Sbjct: 500 tccagataatgttccgccaggtactgttgtggacaaacaagtgtgccatccaaggaatta 559
Query: 243 cgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcactatca 302
|| |||||||||||| | ||||||||||||||||| || || |||||||| || |||||
Sbjct: 560 tgacttctacatgtgtgctcatgctggaatgattggaacgacgaggccaacacattatca 619
Query: 303 catcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgct 362
| ||||| || |||||||| ||| |||||||| ||||||||||| |||||||| ||
Sbjct: 620 tgttctgcacgatgagataggtttctcccctgatgatctgcaggagctagtgcactcact 679
Query: 363 ctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctacgc 422
|||||| ||||| || || ||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 680 ctcttatgtgtatcagagaagcacaacagccatatcagttgttgctccgatttgctatgc 739
Query: 423 ccaccttgc 431
||| |||||
Sbjct: 740 ccatcttgc 748
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 846 gagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgctga 896
>dbj|AK065274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L10, full
insert sequence
Length = 3178
Score = 176 bits (89), Expect = 1e-041
Identities = 256/309 (82%), Gaps = 2/309 (0%)
Strand = Plus / Plus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaattttt-cattcctggaaa 182
||||||||| |||| |||| ||||||||||| || || |||||||| || || ||||
Sbjct: 2400 aagttcacagtgattgttgctcagaagaatcatcataccaaattttttcagtc-tggatc 2458
Query: 183 gccagataatgttccagccggcactgttgttgacaacaaagtctgtcatccaaggaactt 242
|||||||||||||| | || |||||||| ||||| |||| || ||||||||||| |
Sbjct: 2459 tccagataatgttccgccaggtactgttgtggacaaacaagtgtgccatccaaggaatta 2518
Query: 243 cgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcactatca 302
|| |||||||||||| | ||||||||||||||||| || || |||||||| || |||||
Sbjct: 2519 tgacttctacatgtgtgctcatgctggaatgattggaacgacgaggccaacacattatca 2578
Query: 303 catcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgct 362
| ||||| || |||||||| ||| |||||||| ||||||||||| |||||||| ||
Sbjct: 2579 tgttctgcacgatgagataggtttctcccctgatgatctgcaggagctagtgcactcact 2638
Query: 363 ctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctacgc 422
|||||| ||||| || || ||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 2639 ctcttatgtgtatcagagaagcacaacagccatatcagttgttgctccgatttgctatgc 2698
Query: 423 ccaccttgc 431
||| |||||
Sbjct: 2699 ccatcttgc 2707
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 2805 gagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgctga 2855
>dbj|AK104539.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H02, full
insert sequence
Length = 1196
Score = 176 bits (89), Expect = 1e-041
Identities = 256/309 (82%), Gaps = 2/309 (0%)
Strand = Plus / Plus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaattttt-cattcctggaaa 182
||||||||| |||| |||| ||||||||||| || || |||||||| || || ||||
Sbjct: 441 aagttcacagtgattgttgctcagaagaatcatcataccaaattttttcagtc-tggatc 499
Query: 183 gccagataatgttccagccggcactgttgttgacaacaaagtctgtcatccaaggaactt 242
|||||||||||||| | || |||||||| ||||| |||| || ||||||||||| |
Sbjct: 500 tccagataatgttccgccaggtactgttgtggacaaacaagtgtgccatccaaggaatta 559
Query: 243 cgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcactatca 302
|| |||||||||||| | ||||||||||||||||| || || |||||||| || |||||
Sbjct: 560 tgacttctacatgtgtgctcatgctggaatgattggaacgacgaggccaacacattatca 619
Query: 303 catcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgct 362
| ||||| || |||||||| ||| |||||||| ||||||||||| |||||||| ||
Sbjct: 620 tgttctgcacgatgagataggtttctcccctgatgatctgcaggagctagtgcactcact 679
Query: 363 ctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctacgc 422
|||||| ||||| || || ||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 680 ctcttatgtgtatcagagaagcacaacagccatatcagttgttgctccgatttgctatgc 739
Query: 423 ccaccttgc 431
||| |||||
Sbjct: 740 ccatcttgc 748
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 846 gagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgctga 896
>dbj|AK119248.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C06, full
insert sequence
Length = 1885
Score = 176 bits (89), Expect = 1e-041
Identities = 256/309 (82%), Gaps = 2/309 (0%)
Strand = Plus / Plus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaattttt-cattcctggaaa 182
||||||||| |||| |||| ||||||||||| || || |||||||| || || ||||
Sbjct: 1130 aagttcacagtgattgttgctcagaagaatcatcataccaaattttttcagtc-tggatc 1188
Query: 183 gccagataatgttccagccggcactgttgttgacaacaaagtctgtcatccaaggaactt 242
|||||||||||||| | || |||||||| ||||| |||| || ||||||||||| |
Sbjct: 1189 tccagataatgttccgccaggtactgttgtggacaaacaagtgtgccatccaaggaatta 1248
Query: 243 cgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcactatca 302
|| |||||||||||| | ||||||||||||||||| || || |||||||| || |||||
Sbjct: 1249 tgacttctacatgtgtgctcatgctggaatgattggaacgacgaggccaacacattatca 1308
Query: 303 catcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgct 362
| ||||| || |||||||| ||| |||||||| ||||||||||| |||||||| ||
Sbjct: 1309 tgttctgcacgatgagataggtttctcccctgatgatctgcaggagctagtgcactcact 1368
Query: 363 ctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctacgc 422
|||||| ||||| || || ||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 1369 ctcttatgtgtatcagagaagcacaacagccatatcagttgttgctccgatttgctatgc 1428
Query: 423 ccaccttgc 431
||| |||||
Sbjct: 1429 ccatcttgc 1437
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 1535 gagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgctga 1585
>dbj|AK122078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119H08, full
insert sequence
Length = 3385
Score = 176 bits (89), Expect = 1e-041
Identities = 256/309 (82%), Gaps = 2/309 (0%)
Strand = Plus / Plus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaattttt-cattcctggaaa 182
||||||||| |||| |||| ||||||||||| || || |||||||| || || ||||
Sbjct: 2582 aagttcacagtgattgttgctcagaagaatcatcataccaaattttttcagtc-tggatc 2640
Query: 183 gccagataatgttccagccggcactgttgttgacaacaaagtctgtcatccaaggaactt 242
|||||||||||||| | || |||||||| ||||| |||| || ||||||||||| |
Sbjct: 2641 tccagataatgttccgccaggtactgttgtggacaaacaagtgtgccatccaaggaatta 2700
Query: 243 cgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcactatca 302
|| |||||||||||| | ||||||||||||||||| || || |||||||| || |||||
Sbjct: 2701 tgacttctacatgtgtgctcatgctggaatgattggaacgacgaggccaacacattatca 2760
Query: 303 catcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgct 362
| ||||| || |||||||| ||| |||||||| ||||||||||| |||||||| ||
Sbjct: 2761 tgttctgcacgatgagataggtttctcccctgatgatctgcaggagctagtgcactcact 2820
Query: 363 ctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctacgc 422
|||||| ||||| || || ||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 2821 ctcttatgtgtatcagagaagcacaacagccatatcagttgttgctccgatttgctatgc 2880
Query: 423 ccaccttgc 431
||| |||||
Sbjct: 2881 ccatcttgc 2889
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 2987 gagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgctga 3037
>gb|C98487.1|C98487 C98487 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0325_6Z, mRNA sequence
Length = 552
Score = 157 bits (79), Expect = 1e-035
Identities = 174/206 (84%)
Strand = Plus / Plus
Query: 379 aggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcc 438
|||||||| |||||||||||||| ||||| ||||| | ||||| || || || || ||
Sbjct: 183 aggagcactacagccatatcagtcgttgcacccattttntacgcgcatctcgctgctgct 242
Query: 439 caggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatgggggg 498
||||| | |||||||| ||||||||||||||||||||||| || || |||||||| ||
Sbjct: 243 caggtcagccagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggc 302
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
||||||||||||||||||| || || | |||||||| || |||||| | ||||| |||
Sbjct: 303 catacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcagg 362
Query: 559 agctccatgttcttctgctgagcagc 584
||||||||||||||||||||||||||
Sbjct: 363 agctccatgttcttctgctgagcagc 388
>gb|AACV01000677.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000677, whole
genome shotgun sequence
Length = 43096
Score = 139 bits (70), Expect = 3e-030
Identities = 154/182 (84%)
Strand = Plus / Minus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttc 462
||||| ||||| |||||||| || || || || || ||||| | |||||||| ||||||
Sbjct: 9118 gttgcacccatttgctacgcgcatctcgctgctgctcaggtcagccagttcatcaagttc 9059
Query: 463 gacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccct 522
||||||||||||||||| || || |||||||| || ||||||||||||||||||| ||
Sbjct: 9058 gacgagatgtcggagacgtcgtcgagccatggtggccatacctcggcgggcagcgctccg 8999
Query: 523 gtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagca 582
|| | |||||||| || |||||| | ||||| |||||||||||||||||||||||||||
Sbjct: 8998 gtgcccgagctgcctcgcctgcataacaaagtcaggagctccatgttcttctgctgagca 8939
Query: 583 gc 584
||
Sbjct: 8938 gc 8937
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct: 10076 actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac 10017
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 10016 gctggaatgattg 10004
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 373 taccaaaggagcacaacagccatatcagt 401
||||| |||||||| ||||||||||||||
Sbjct: 9240 taccagaggagcactacagccatatcagt 9212
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 139 bits (70), Expect = 3e-030
Identities = 154/182 (84%)
Strand = Plus / Minus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttc 462
||||| ||||| |||||||| || || || || || ||||| | |||||||| ||||||
Sbjct: 9628464 gttgcacccatttgctacgcgcatctcgctgctgctcaggtcagccagttcatcaagttc 9628405
Query: 463 gacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccct 522
||||||||||||||||| || || |||||||| || ||||||||||||||||||| ||
Sbjct: 9628404 gacgagatgtcggagacgtcgtcgagccatggtggccatacctcggcgggcagcgctccg 9628345
Query: 523 gtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagca 582
|| | |||||||| || |||||| | ||||| |||||||||||||||||||||||||||
Sbjct: 9628344 gtgcccgagctgcctcgcctgcataacaaagtcaggagctccatgttcttctgctgagca 9628285
Query: 583 gc 584
||
Sbjct: 9628284 gc 9628283
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct: 9629422 actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac 9629363
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 9629362 gctggaatgattg 9629350
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||||||||| | |||||||||| ||||||| ||||||||||||||| | |||
Sbjct: 9611909 actgttgttgacaaaggaatctgtcatcccaggaactgtgatttctacatgtgtgctcat 9611850
Query: 265 gctggaatgattg 277
||||| |||||||
Sbjct: 9611849 gctgggatgattg 9611837
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 373 taccaaaggagcacaacagccatatcagt 401
||||| |||||||| ||||||||||||||
Sbjct: 9628586 taccagaggagcactacagccatatcagt 9628558
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 139 bits (70), Expect = 3e-030
Identities = 154/182 (84%)
Strand = Plus / Minus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttc 462
||||| ||||| |||||||| || || || || || ||||| | |||||||| ||||||
Sbjct: 9628304 gttgcacccatttgctacgcgcatctcgctgctgctcaggtcagccagttcatcaagttc 9628245
Query: 463 gacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccct 522
||||||||||||||||| || || |||||||| || ||||||||||||||||||| ||
Sbjct: 9628244 gacgagatgtcggagacgtcgtcgagccatggtggccatacctcggcgggcagcgctccg 9628185
Query: 523 gtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagca 582
|| | |||||||| || |||||| | ||||| |||||||||||||||||||||||||||
Sbjct: 9628184 gtgcccgagctgcctcgcctgcataacaaagtcaggagctccatgttcttctgctgagca 9628125
Query: 583 gc 584
||
Sbjct: 9628124 gc 9628123
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct: 9629262 actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac 9629203
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 9629202 gctggaatgattg 9629190
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||||||||| | |||||||||| ||||||| ||||||||||||||| | |||
Sbjct: 9611749 actgttgttgacaaaggaatctgtcatcccaggaactgtgatttctacatgtgtgctcat 9611690
Query: 265 gctggaatgattg 277
||||| |||||||
Sbjct: 9611689 gctgggatgattg 9611677
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 373 taccaaaggagcacaacagccatatcagt 401
||||| |||||||| ||||||||||||||
Sbjct: 9628426 taccagaggagcactacagccatatcagt 9628398
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0038F12
Length = 190014
Score = 139 bits (70), Expect = 3e-030
Identities = 154/182 (84%)
Strand = Plus / Minus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttc 462
||||| ||||| |||||||| || || || || || ||||| | |||||||| ||||||
Sbjct: 68685 gttgcacccatttgctacgcgcatctcgctgctgctcaggtcagccagttcatcaagttc 68626
Query: 463 gacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccct 522
||||||||||||||||| || || |||||||| || ||||||||||||||||||| ||
Sbjct: 68625 gacgagatgtcggagacgtcgtcgagccatggtggccatacctcggcgggcagcgctccg 68566
Query: 523 gtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagca 582
|| | |||||||| || |||||| | ||||| |||||||||||||||||||||||||||
Sbjct: 68565 gtgcccgagctgcctcgcctgcataacaaagtcaggagctccatgttcttctgctgagca 68506
Query: 583 gc 584
||
Sbjct: 68505 gc 68504
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct: 69643 actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac 69584
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 69583 gctggaatgattg 69571
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||||||||| | |||||||||| ||||||| ||||||||||||||| | |||
Sbjct: 52130 actgttgttgacaaaggaatctgtcatcccaggaactgtgatttctacatgtgtgctcat 52071
Query: 265 gctggaatgattg 277
||||| |||||||
Sbjct: 52070 gctgggatgattg 52058
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 373 taccaaaggagcacaacagccatatcagt 401
||||| |||||||| ||||||||||||||
Sbjct: 68807 taccagaggagcactacagccatatcagt 68779
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 139 bits (70), Expect = 3e-030
Identities = 154/182 (84%)
Strand = Plus / Minus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttc 462
||||| ||||| |||||||| || || || || || ||||| | |||||||| ||||||
Sbjct: 9666374 gttgcacccatttgctacgcgcatctcgctgctgctcaggtcagccagttcatcaagttc 9666315
Query: 463 gacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccct 522
||||||||||||||||| || || |||||||| || ||||||||||||||||||| ||
Sbjct: 9666314 gacgagatgtcggagacgtcgtcgagccatggtggccatacctcggcgggcagcgctccg 9666255
Query: 523 gtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagca 582
|| | |||||||| || |||||| | ||||| |||||||||||||||||||||||||||
Sbjct: 9666254 gtgcccgagctgcctcgcctgcataacaaagtcaggagctccatgttcttctgctgagca 9666195
Query: 583 gc 584
||
Sbjct: 9666194 gc 9666193
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct: 9667332 actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac 9667273
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 9667272 gctggaatgattg 9667260
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||||||||| | |||||||||| ||||||| ||||||||||||||| | |||
Sbjct: 9648720 actgttgttgacaaaggaatctgtcatcccaggaactgtgatttctacatgtgtgctcat 9648661
Query: 265 gctggaatgattg 277
||||| |||||||
Sbjct: 9648660 gctgggatgattg 9648648
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 373 taccaaaggagcacaacagccatatcagt 401
||||| |||||||| ||||||||||||||
Sbjct: 9666496 taccagaggagcactacagccatatcagt 9666468
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 139 bits (70), Expect = 3e-030
Identities = 154/182 (84%)
Strand = Plus / Minus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttc 462
||||| ||||| |||||||| || || || || || ||||| | |||||||| ||||||
Sbjct: 9666374 gttgcacccatttgctacgcgcatctcgctgctgctcaggtcagccagttcatcaagttc 9666315
Query: 463 gacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccct 522
||||||||||||||||| || || |||||||| || ||||||||||||||||||| ||
Sbjct: 9666314 gacgagatgtcggagacgtcgtcgagccatggtggccatacctcggcgggcagcgctccg 9666255
Query: 523 gtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagca 582
|| | |||||||| || |||||| | ||||| |||||||||||||||||||||||||||
Sbjct: 9666254 gtgcccgagctgcctcgcctgcataacaaagtcaggagctccatgttcttctgctgagca 9666195
Query: 583 gc 584
||
Sbjct: 9666194 gc 9666193
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct: 9667332 actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac 9667273
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 9667272 gctggaatgattg 9667260
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||||||||| | |||||||||| ||||||| ||||||||||||||| | |||
Sbjct: 9648720 actgttgttgacaaaggaatctgtcatcccaggaactgtgatttctacatgtgtgctcat 9648661
Query: 265 gctggaatgattg 277
||||| |||||||
Sbjct: 9648660 gctgggatgattg 9648648
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 373 taccaaaggagcacaacagccatatcagt 401
||||| |||||||| ||||||||||||||
Sbjct: 9666496 taccagaggagcactacagccatatcagt 9666468
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 139 bits (70), Expect = 3e-030
Identities = 154/182 (84%)
Strand = Plus / Minus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttc 462
||||| ||||| |||||||| || || || || || ||||| | |||||||| ||||||
Sbjct: 9630682 gttgcacccatttgctacgcgcatctcgctgctgctcaggtcagccagttcatcaagttc 9630623
Query: 463 gacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccct 522
||||||||||||||||| || || |||||||| || ||||||||||||||||||| ||
Sbjct: 9630622 gacgagatgtcggagacgtcgtcgagccatggtggccatacctcggcgggcagcgctccg 9630563
Query: 523 gtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagca 582
|| | |||||||| || |||||| | ||||| |||||||||||||||||||||||||||
Sbjct: 9630562 gtgcccgagctgcctcgcctgcataacaaagtcaggagctccatgttcttctgctgagca 9630503
Query: 583 gc 584
||
Sbjct: 9630502 gc 9630501
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct: 9631640 actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac 9631581
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 9631580 gctggaatgattg 9631568
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||||||||| | |||||||||| ||||||| ||||||||||||||| | |||
Sbjct: 9614127 actgttgttgacaaaggaatctgtcatcccaggaactgtgatttctacatgtgtgctcat 9614068
Query: 265 gctggaatgattg 277
||||| |||||||
Sbjct: 9614067 gctgggatgattg 9614055
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 373 taccaaaggagcacaacagccatatcagt 401
||||| |||||||| ||||||||||||||
Sbjct: 9630804 taccagaggagcactacagccatatcagt 9630776
>gb|AU225181.1|AU225181 AU225181 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0114, mRNA sequence
Length = 365
Score = 137 bits (69), Expect = 1e-029
Identities = 120/137 (87%)
Strand = Plus / Minus
Query: 448 cagttcataaagttcgacgagatgtcggagacttcatctagccatggggggcatacctcg 507
|||||||| ||||||||||||||||||||||| || || |||||||| || |||||||||
Sbjct: 319 cagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggccatacctcg 260
Query: 508 gcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatg 567
|||||||||| || || | |||||||| || |||||| | ||||| ||||||||||||
Sbjct: 259 gcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcaggagctccatg 200
Query: 568 ttcttctgctgagcagc 584
|||||||||||||||||
Sbjct: 199 ttcttctgctgagcagc 183
>gb|CV733900.1|CV733900 FLO--09-A09.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--09-A09,
mRNA sequence
Length = 404
Score = 137 bits (69), Expect = 1e-029
Identities = 120/137 (87%)
Strand = Plus / Plus
Query: 448 cagttcataaagttcgacgagatgtcggagacttcatctagccatggggggcatacctcg 507
|||||||| ||||||||||||||||||||||| || || |||||||| || |||||||||
Sbjct: 72 cagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggccatacctcg 131
Query: 508 gcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatg 567
|||||||||| || || | |||||||| || |||||| | ||||| ||||||||||||
Sbjct: 132 gcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcaggagctccatg 191
Query: 568 ttcttctgctgagcagc 584
|||||||||||||||||
Sbjct: 192 ttcttctgctgagcagc 208
>gb|D23328.1|D23328 RICC2623A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2623_1A, mRNA sequence
Length = 276
Score = 127 bits (64), Expect = 1e-026
Identities = 149/179 (83%)
Strand = Plus / Plus
Query: 253 atgtgttcacatgctggaatgattgggactaccaggccaactcactatcacatcctgcat 312
|||||| | ||||||||||||||||| || || |||||||| || ||||| | |||||
Sbjct: 1 atgtgtgctcatgctggaatgattggaacgacgaggccaacacattatcatgttctgcac 60
Query: 313 gacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtg 372
|| |||||||| || |||||||| |||||||||| |||||||| |||||||| |||
Sbjct: 61 gatgagataggtttntnccctgatgatctgcaggagcnagtgcactcactctcttatgtg 120
Query: 373 taccaaaggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgc 431
|| || | ||||||||||||||||||||||||||||| || ||||| ||||| |||||
Sbjct: 121 tatcananaagcacaacagccatatcagttgttgctccgatttgctatgcccatcttgc 179
>gb|CF323377.1|CF323377 HDN--03-L03.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--03-L03, mRNA sequence
Length = 601
Score = 99.6 bits (50), Expect = 2e-018
Identities = 104/122 (85%)
Strand = Plus / Plus
Query: 206 ctgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatg 265
||||||| |||||| ||||||||||||||||||| || |||||||||||| | || |
Sbjct: 473 ctgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcacg 532
Query: 266 ctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagataggct 325
||||||||||||| ||||| ||||| || || ||||| ||||| ||||| ||||||||||
Sbjct: 533 ctggaatgattggaactacaaggcctacacattatcatatccttcatgatgagataggct 592
Query: 326 tc 327
||
Sbjct: 593 tc 594
>gb|AACV01008615.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008615, whole
genome shotgun sequence
Length = 37475
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 11672 gagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgctga 11622
Score = 58.0 bits (29), Expect = 8e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| ||||| |||| || ||||||||||| | || |||||||||||| | |||
Sbjct: 12275 actgttgtggacaaacaagtgtgccatccaaggaattatgacttctacatgtgtgctcat 12216
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 12215 gctggaatgattg 12203
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 286 aggccaactcactatcacatcctgcatgacgagataggcttcaatcctgatgacctgcag 345
|||||||| || ||||| | ||||| || |||||||| ||| |||||||| ||||||
Sbjct: 12095 aggccaacacattatcatgttctgcacgatgagataggtttctcccctgatgatctgcag 12036
Query: 346 gagctggtgcactcgctctcttacgtgta 374
||||| |||||||| |||||||| |||||
Sbjct: 12035 gagctagtgcactcactctcttatgtgta 12007
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 382 agcacaacagccatatcagttg 403
||||||||||||||||||||||
Sbjct: 11916 agcacaacagccatatcagttg 11895
>ref|NT_080056.2| Oryza sativa (japonica cultivar-group)
Length = 253647
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 121826 gagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgctga 121776
Score = 58.0 bits (29), Expect = 8e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| ||||| |||| || ||||||||||| | || |||||||||||| | |||
Sbjct: 122429 actgttgtggacaaacaagtgtgccatccaaggaattatgacttctacatgtgtgctcat 122370
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 122369 gctggaatgattg 122357
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 286 aggccaactcactatcacatcctgcatgacgagataggcttcaatcctgatgacctgcag 345
|||||||| || ||||| | ||||| || |||||||| ||| |||||||| ||||||
Sbjct: 122249 aggccaacacattatcatgttctgcacgatgagataggtttctcccctgatgatctgcag 122190
Query: 346 gagctggtgcactcgctctcttacgtgta 374
||||| |||||||| |||||||| |||||
Sbjct: 122189 gagctagtgcactcactctcttatgtgta 122161
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 382 agcacaacagccatatcagttg 403
||||||||||||||||||||||
Sbjct: 122070 agcacaacagccatatcagttg 122049
>gb|CH401184.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000021 genomic
scaffold, whole genome shotgun sequence
Length = 2817894
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 1472339 gagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgctga 1472289
Score = 58.0 bits (29), Expect = 8e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| ||||| |||| || ||||||||||| | || |||||||||||| | |||
Sbjct: 1472942 actgttgtggacaaacaagtgtgccatccaaggaattatgacttctacatgtgtgctcat 1472883
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 1472882 gctggaatgattg 1472870
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 286 aggccaactcactatcacatcctgcatgacgagataggcttcaatcctgatgacctgcag 345
|||||||| || ||||| | ||||| || |||||||| ||| |||||||| ||||||
Sbjct: 1472762 aggccaacacattatcatgttctgcacgatgagataggtttctcccctgatgatctgcag 1472703
Query: 346 gagctggtgcactcgctctcttacgtgta 374
||||| |||||||| |||||||| |||||
Sbjct: 1472702 gagctagtgcactcactctcttatgtgta 1472674
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 382 agcacaacagccatatcagttg 403
||||||||||||||||||||||
Sbjct: 1472583 agcacaacagccatatcagttg 1472562
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 2958244 gagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgctga 2958194
Score = 58.0 bits (29), Expect = 8e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| ||||| |||| || ||||||||||| | || |||||||||||| | |||
Sbjct: 2958847 actgttgtggacaaacaagtgtgccatccaaggaattatgacttctacatgtgtgctcat 2958788
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 2958787 gctggaatgattg 2958775
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 286 aggccaactcactatcacatcctgcatgacgagataggcttcaatcctgatgacctgcag 345
|||||||| || ||||| | ||||| || |||||||| ||| |||||||| ||||||
Sbjct: 2958667 aggccaacacattatcatgttctgcacgatgagataggtttctcccctgatgatctgcag 2958608
Query: 346 gagctggtgcactcgctctcttacgtgta 374
||||| |||||||| |||||||| |||||
Sbjct: 2958607 gagctagtgcactcactctcttatgtgta 2958579
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 382 agcacaacagccatatcagttg 403
||||||||||||||||||||||
Sbjct: 2958488 agcacaacagccatatcagttg 2958467
>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11,
complete sequence
Length = 127419
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 121826 gagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgctga 121776
Score = 58.0 bits (29), Expect = 8e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| ||||| |||| || ||||||||||| | || |||||||||||| | |||
Sbjct: 122429 actgttgtggacaaacaagtgtgccatccaaggaattatgacttctacatgtgtgctcat 122370
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 122369 gctggaatgattg 122357
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 286 aggccaactcactatcacatcctgcatgacgagataggcttcaatcctgatgacctgcag 345
|||||||| || ||||| | ||||| || |||||||| ||| |||||||| ||||||
Sbjct: 122249 aggccaacacattatcatgttctgcacgatgagataggtttctcccctgatgatctgcag 122190
Query: 346 gagctggtgcactcgctctcttacgtgta 374
||||| |||||||| |||||||| |||||
Sbjct: 122189 gagctagtgcactcactctcttatgtgta 122161
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 382 agcacaacagccatatcagttg 403
||||||||||||||||||||||
Sbjct: 122070 agcacaacagccatatcagttg 122049
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 3532531 gagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgctga 3532481
Score = 58.0 bits (29), Expect = 8e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| ||||| |||| || ||||||||||| | || |||||||||||| | |||
Sbjct: 3533134 actgttgtggacaaacaagtgtgccatccaaggaattatgacttctacatgtgtgctcat 3533075
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 3533074 gctggaatgattg 3533062
Score = 58.0 bits (29), Expect = 8e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 286 aggccaactcactatcacatcctgcatgacgagataggcttcaatcctgatgacctgcag 345
|||||||| || ||||| | ||||| || |||||||| ||| |||||||| ||||||
Sbjct: 3532954 aggccaacacattatcatgttctgcacgatgagataggtttctcccctgatgatctgcag 3532895
Query: 346 gagctggtgcactcgctctcttacgtgta 374
||||| |||||||| |||||||| |||||
Sbjct: 3532894 gagctagtgcactcactctcttatgtgta 3532866
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 382 agcacaacagccatatcagttg 403
||||||||||||||||||||||
Sbjct: 3532775 agcacaacagccatatcagttg 3532754
>gb|AQ954566.1|AQ954566 nbeb0071M13r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0071M13r, DNA
sequence
Length = 376
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||||||||| | |||||||||| ||||||| ||||||||||||||| | |||
Sbjct: 94 actgttgttgacaaaggaatctgtcatcccaggaactgtgatttctacatgtgtgctcat 35
Query: 265 gctggaatgattg 277
||||| |||||||
Sbjct: 34 gctgggatgattg 22
>gb|AACV01000673.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000673, whole
genome shotgun sequence
Length = 39857
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||||||||| | |||||||||| ||||||| ||||||||||||||| | |||
Sbjct: 35049 actgttgttgacaaaggaatctgtcatcccaggaactgtgatttctacatgtgtgctcat 34990
Query: 265 gctggaatgattg 277
||||| |||||||
Sbjct: 34989 gctgggatgattg 34977
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0424A08
Length = 151294
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||||||||| | |||||||||| ||||||| ||||||||||||||| | |||
Sbjct: 147556 actgttgttgacaaaggaatctgtcatcccaggaactgtgatttctacatgtgtgctcat 147497
Query: 265 gctggaatgattg 277
||||| |||||||
Sbjct: 147496 gctgggatgattg 147484
>gb|CF325923.1|CF325923 JMT1--04-J16.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-J16, mRNA sequence
Length = 465
Score = 61.9 bits (31), Expect = 5e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 529 gagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||| || || |||||||||||||||||||||||||| || ||||||
Sbjct: 424 gagctgcctcgcctccatgagaaagtgaggagctccatgtttttttgctga 374
>gb|CB674255.1|CB674255 OSJNEe09D12.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09D12 3', mRNA sequence
Length = 824
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaatttttc 171
||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct: 788 aagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttc 741
>gb|CB677346.1|CB677346 OSJNEe14C23.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe14C23 5', mRNA sequence
Length = 862
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaatttttc 171
||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct: 813 aagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttc 860
>dbj|AK101842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069G22, full
insert sequence
Length = 1211
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaatttttc 171
||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct: 477 aagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttc 524
>gb|AY323483.1| Oryza sativa (japonica cultivar-group) zwille pinhead-like protein
(ZP1) mRNA, complete cds
Length = 1407
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaatttttc 171
||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct: 651 aagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttc 698
>dbj|AP006447.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1100H02
Length = 128773
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaatttttc 171
||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct: 75851 aagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttc 75804
>dbj|AP006465.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1059D01
Length = 158792
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaatttttc 171
||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct: 1595 aagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttc 1548
>gb|AACV01015684.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015684, whole
genome shotgun sequence
Length = 18500
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaatttttc 171
||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct: 2729 aagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttc 2682
>ref|XM_477327.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2670
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaatttttc 171
||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct: 2215 aagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttc 2262
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaatttttc 171
||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct: 9449937 aagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttc 9449890
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058 genomic
scaffold, whole genome shotgun sequence
Length = 3500188
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaatttttc 171
||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct: 3394827 aagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttc 3394780
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaatttttc 171
||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct: 9448452 aagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttc 9448405
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 124 aagttcacattgatcattgcccagaagaatcaccacactaaatttttc 171
||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct: 9493865 aagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttc 9493818
>gb|AU068544.1|AU068544 AU068544 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30430_12Z, mRNA sequence
Length = 239
Score = 52.0 bits (26), Expect = 5e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 541 ctgcatgagaaagtgaggagctccatgttcttctgctg 578
|||||| | ||||| |||||||||||||||||||||||
Sbjct: 7 ctgcataacaaagtcaggagctccatgttcttctgctg 44
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,037,001
Number of Sequences: 438736
Number of extensions: 1037001
Number of successful extensions: 4579
Number of sequences better than 0.5: 73
Number of HSP's better than 0.5 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4201
Number of HSP's gapped (non-prelim): 352
length of query: 867
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 846
effective length of database: 2,791,206,460
effective search space: 2361360665160
effective search space used: 2361360665160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)