BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306445.2.1
(1074 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_474204.1| Oryza sativa (japonica cultivar-group), p... 894 0.0
dbj|AK072534.1| Oryza sativa (japonica cultivar-group) cDNA... 888 0.0
dbj|AK122053.1| Oryza sativa (japonica cultivar-group) cDNA... 743 0.0
dbj|AK059302.1| Oryza sativa (japonica cultivar-group) cDNA... 712 0.0
gb|CB642176.1|CB642176 OSJNEb02D13.f OSJNEb Oryza sativa (j... 702 0.0
gb|AU068447.1|AU068447 AU068447 Rice callus Oryza sativa (j... 472 e-130
gb|D47609.1|D47609 RICS13205A Rice green shoot Oryza sativa... 440 e-121
gb|D47182.1|D47182 RICS12353A Rice green shoot Oryza sativa... 432 e-118
gb|D47633.1|D47633 RICS13246A Rice green shoot Oryza sativa... 355 3e-095
gb|D47373.1|D47373 RICS12718A Rice green shoot Oryza sativa... 349 2e-093
gb|D47314.1|D47314 RICS12611A Rice green shoot Oryza sativa... 333 1e-088
gb|AU096177.1|AU096177 AU096177 Rice green shoot Oryza sati... 299 2e-078
gb|AU225798.1|AU225798 AU225798 Oryza sativa Koshihikari pi... 264 9e-068
gb|AACV01010620.1| Oryza sativa (japonica cultivar-group) c... 204 7e-050
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 204 7e-050
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 204 7e-050
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 204 7e-050
emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromoso... 204 7e-050
emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromoso... 204 7e-050
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 204 7e-050
gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence 204 7e-050
dbj|AK071637.1| Oryza sativa (japonica cultivar-group) cDNA... 184 7e-044
gb|AU197922.1|AU197922 AU197922 Rice green shoot Oryza sati... 172 3e-040
gb|AU176540.1|AU176540 AU176540 Rice green shoot Oryza sati... 168 4e-039
gb|AU068448.1|AU068448 AU068448 Rice callus Oryza sativa (j... 151 9e-034
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 94 2e-016
dbj|AP005931.2| Oryza sativa (japonica cultivar-group) geno... 94 2e-016
dbj|AP005445.3| Oryza sativa (japonica cultivar-group) geno... 94 2e-016
gb|AACV01014855.1| Oryza sativa (japonica cultivar-group) c... 94 2e-016
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 94 2e-016
gb|CF309159.1|CF309159 ABF--03-D22.g1 ABF3-overexpressing t... 92 7e-016
gb|CF311009.1|CF311009 ABF--06-B01.b1 ABF3-overexpressing t... 92 7e-016
gb|C93614.1|C93614 C93614 Rice panicle at flowering stage O... 80 3e-012
gb|CZ557046.1|CZ557046 M0033010 AS_TRIM_TDNA_B1 Oryza sativ... 76 4e-011
gb|CB644795.1|CB644795 OSJNEb06C15.f OSJNEb Oryza sativa (j... 74 2e-010
gb|CB644796.1|CB644796 OSJNEb06C15.r OSJNEb Oryza sativa (j... 74 2e-010
gb|CB645136.1|CB645136 OSJNEb06K12.f OSJNEb Oryza sativa (j... 74 2e-010
gb|CB658323.1|CB658323 OSJNEc14E14.r OSJNEc Oryza sativa (j... 74 2e-010
gb|CB663127.1|CB663127 OSJNEd07L24.r OSJNEd Oryza sativa (j... 74 2e-010
gb|CB673944.1|CB673944 OSJNEe08L21.r OSJNEe Oryza sativa (j... 74 2e-010
gb|CB682621.1|CB682621 OSJNEf10C13.r OSJNEf Oryza sativa (j... 74 2e-010
gb|CB682796.1|CB682796 OSJNEf10H14.r OSJNEf Oryza sativa (j... 74 2e-010
gb|CB684284.1|CB684284 OSJNEf13K04.r OSJNEf Oryza sativa (j... 74 2e-010
gb|CF309864.1|CF309864 ABF--04-D19.g1 ABF3-overexpressing t... 74 2e-010
dbj|AK066016.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
gb|D39634.1|D39634 RICS1165A Rice shoot Oryza sativa (japon... 70 3e-009
gb|AU068643.1|AU068643 AU068643 Rice callus Oryza sativa (j... 70 3e-009
gb|CB663126.1|CB663126 OSJNEd07L24.f OSJNEd Oryza sativa (j... 70 3e-009
gb|CB684283.1|CB684283 OSJNEf13K04.f OSJNEf Oryza sativa (j... 70 3e-009
gb|CB658322.1|CB658322 OSJNEc14E14.f OSJNEc Oryza sativa (j... 66 4e-008
gb|CB663260.1|CB663260 OSJNEd07P23.r OSJNEd Oryza sativa (j... 64 2e-007
gb|CB682795.1|CB682795 OSJNEf10H14.f OSJNEf Oryza sativa (j... 62 7e-007
gb|CB644270.1|CB644270 OSJNEb05G11.r OSJNEb Oryza sativa (j... 60 3e-006
gb|CB664312.1|CB664312 OSJNEd09P08.r OSJNEd Oryza sativa (j... 60 3e-006
dbj|AP004748.1| Oryza sativa (japonica cultivar-group) chro... 58 1e-005
dbj|AP005412.3| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AACV01003359.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 58 1e-005
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|CF303372.1|CF303372 ABF1--02-B08.g1 ABF3-overexpressing ... 54 2e-004
gb|AU173277.1|AU173277 AU173277 Rice root Oryza sativa (jap... 46 0.039
gb|CB648480.1|CB648480 OSJNEb11O02.r OSJNEb Oryza sativa (j... 46 0.039
gb|CV721175.1|CV721175 YBH--03-C19.b1 Rice before heading y... 46 0.039
dbj|AK101645.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.039
dbj|AK102319.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.039
gb|AC098598.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|AACV01000128.1| Oryza sativa (japonica cultivar-group) c... 46 0.039
gb|AACV01001839.1| Oryza sativa (japonica cultivar-group) c... 46 0.039
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.039
ref|NM_192812.1| Oryza sativa (japonica cultivar-group), p... 46 0.039
ref|XM_475983.1| Oryza sativa (japonica cultivar-group), p... 46 0.039
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 46 0.039
ref|NT_107222.1| Oryza sativa (japonica cultivar-group) 46 0.039
dbj|AP003328.3| Oryza sativa (japonica cultivar-group) geno... 46 0.039
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.039
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 46 0.039
gb|CA753953.1|CA753953 BR040006000A10.ab1 OA Oryza sativa (... 44 0.16
gb|CB648479.1|CB648479 OSJNEb11O02.f OSJNEb Oryza sativa (j... 44 0.16
gb|CB664311.1|CB664311 OSJNEd09P08.f OSJNEd Oryza sativa (j... 44 0.16
gb|CF292816.1|CF292816 30DGS--01-M12.b1 Rice leaf plasmid c... 44 0.16
gb|CF308590.1|CF308590 ABF--02-H14.b1 ABF3-overexpressing t... 44 0.16
gb|CF309158.1|CF309158 ABF--03-D22.b1 ABF3-overexpressing t... 44 0.16
dbj|AP005191.3| Oryza sativa (japonica cultivar-group) geno... 44 0.16
>ref|XM_474204.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 849
Score = 894 bits (451), Expect = 0.0
Identities = 718/807 (88%)
Strand = Plus / Minus
Query: 260 ttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgtt 319
|||||| ||||| || || |||||||||||||||||| ||||||| || |||||||||||
Sbjct: 849 ttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgtt 790
Query: 320 gtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggtc 379
||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||
Sbjct: 789 gtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggtc 730
Query: 380 ctgaatggatctagtcatcgcgacagcttcctcgttagagaccacatcccacagcccatc 439
||||| ||||| ||||| ||||||| ||||| || | || |||||||||||||||||
Sbjct: 729 atgaatcgatctggtcatgtcgacagcctcctcattggttactacatcccacagcccatc 670
Query: 440 acttgcaaggataagaaactcgagtgtgtcatcaacaacctcctctcggatctccggatc 499
||||||||| || || |||||||| | || ||||| ||| ||||| || ||||| |||||
Sbjct: 669 acttgcaagaatgaggaactcgagagagtgatcaataacttcctcccgaatctcaggatc 610
Query: 500 cacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacacc 559
|||||| ||||| |||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 609 cacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaacagcaagcacacc 550
Query: 560 accaacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccg 619
|||||| |||||||||||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct: 549 accaacacgccatgttcctgcccacattacaaaacctccagcatcttcgatacgttgtcg 490
Query: 620 ctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgca 679
|||||| || ||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 489 ctcatctgtctgatcaggcttgtgatcttttgaaacagctatagcatttccccccctgca 430
Query: 680 tatgatagccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagc 739
|||||||||||||||||| ||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 429 tatgatagccctagagtctccaacgtttgcaacaaagagacggtcaccaacaaggacagc 370
Query: 740 agttgatgcagttgacccacattgattttgactactgtcagattctaagaattcactgtc 799
|||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 369 ggttgatgcagttgatccacactggttttgactgctgtcagattctaagaattcactgtc 310
Query: 800 ggtgcttttataagcatcatctatagcgactttagtatcactgatgaactttggatgact 859
||| |||||||||||||||||||| || ||||| || |||||||||||||||||||| ||
Sbjct: 309 ggtacttttataagcatcatctattgccactttggtgtcactgatgaactttggatgcct 250
Query: 860 aacaagattgttgaacaggttttctttaacatactctgctaccttagcaccaccatgacc 919
| ||||| |||| || || | |||||||||||| ||||| |||||||||||||||||
Sbjct: 249 tagaagatgactgaagagattctgtttaacatactcagctactttagcaccaccatgacc 190
Query: 920 atcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctcata 979
||||||||||||||||||||||| ||||| ||||||||| | |||||| ||||||| ||
Sbjct: 189 atcaaaaactccaaaaagaccaataatctgcccatcaacagagtcaattcttgtctcgta 130
Query: 980 gaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatctacc 1039
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 129 aaagtcttccatggaagcccttttaccaggggagctcgcatacccatagctaaacttacc 70
Query: 1040 attctggctgaggccgccgccgctgac 1066
|||||||||||||||||||||||||||
Sbjct: 69 attctggctgaggccgccgccgctgac 43
>dbj|AK072534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131P07, full
insert sequence
Length = 1355
Score = 888 bits (448), Expect = 0.0
Identities = 718/808 (88%)
Strand = Plus / Minus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 1051 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 992
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 991 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 932
Query: 379 cctgaatggatctagtcatcgcgacagcttcctcgttagagaccacatcccacagcccat 438
| ||||| ||||| ||||| ||||||| ||||| || | || ||||||||||||||||
Sbjct: 931 catgaatcgatctggtcatgtcgacagcctcctcattggttactacatcccacagcccat 872
Query: 439 cacttgcaaggataagaaactcgagtgtgtcatcaacaacctcctctcggatctccggat 498
|||||||||| || || |||||||| | || ||||| ||| ||||| || ||||| ||||
Sbjct: 871 cacttgcaagaatgaggaactcgagagagtgatcaataacttcctcccgaatctcaggat 812
Query: 499 ccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacac 558
||||||| ||||| |||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct: 811 ccacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaacagcaagcacac 752
Query: 559 caccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgcc 618
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| || |
Sbjct: 751 caccaacacgccatgttcctgcccacattacaaaacctccagcatcttcgatacgttgtc 692
Query: 619 gctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgc 678
||||||| || ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 691 gctcatctgtctgatcaggcttgtgatcttttgaaacagctatagcatttccccccctgc 632
Query: 679 atatgatagccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacag 738
||||||||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||
Sbjct: 631 atatgatagccctagagtctccaacgtttgcaacaaagagacggtcaccaacaaggacag 572
Query: 739 cagttgatgcagttgacccacattgattttgactactgtcagattctaagaattcactgt 798
| |||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 571 cggttgatgcagttgatccacactggttttgactgctgtcagattctaagaattcactgt 512
Query: 799 cggtgcttttataagcatcatctatagcgactttagtatcactgatgaactttggatgac 858
|||| |||||||||||||||||||| || ||||| || |||||||||||||||||||| |
Sbjct: 511 cggtacttttataagcatcatctattgccactttggtgtcactgatgaactttggatgcc 452
Query: 859 taacaagattgttgaacaggttttctttaacatactctgctaccttagcaccaccatgac 918
| | ||||| |||| || || | ||| |||||||| ||||| ||||||||||||||||
Sbjct: 451 ttagaagatgactgaagagattctgttttacatactcagctactttagcaccaccatgac 392
Query: 919 catcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctcat 978
|||||||||||||||||||||||| ||||| ||||||||| | |||||| ||||||| |
Sbjct: 391 catcaaaaactccaaaaagaccaataatctgcccatcaacagagtcaattcttgtctcgt 332
Query: 979 agaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatctac 1038
| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||
Sbjct: 331 aaaagtcttccatggaagcccttttaccaggggagctcgcatacccatagctaaacttac 272
Query: 1039 cattctggctgaggccgccgccgctgac 1066
||||||||||||||||||||||||||||
Sbjct: 271 cattctggctgaggccgccgccgctgac 244
>dbj|AK122053.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114G24, full
insert sequence
Length = 2161
Score = 743 bits (375), Expect = 0.0
Identities = 612/691 (88%)
Strand = Plus / Minus
Query: 376 ggtcctgaatggatctagtcatcgcgacagcttcctcgttagagaccacatcccacagcc 435
|||| ||||| ||||| ||||| ||||||| ||||| || | || |||||||||||||
Sbjct: 879 ggtcatgaatcgatctggtcatgtcgacagcctcctcattggttactacatcccacagcc 820
Query: 436 catcacttgcaaggataagaaactcgagtgtgtcatcaacaacctcctctcggatctccg 495
||||||||||||| || || |||||||| | || ||||| ||| ||||| || ||||| |
Sbjct: 819 catcacttgcaagaatgaggaactcgagagagtgatcaataacttcctcccgaatctcag 760
Query: 496 gatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagta 555
|||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 759 gatccacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaacagcaagca 700
Query: 556 caccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgct 615
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 699 caccaccaacacgccatgttcctgcccacattacaaaacctccagcatcttcgatacgtt 640
Query: 616 gccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccc 675
| |||||||| || ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct: 639 gtcgctcatctgtctgatcaggcttgtgatcttttgaaacagctatagcatttccccccc 580
Query: 676 tgcatatgatagccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagta 735
|||||||||||||||||||||| ||||| ||||| || |||||||| ||||||||||| |
Sbjct: 579 tgcatatgatagccctagagtctccaacgtttgcaacaaagagacggtcaccaacaagga 520
Query: 736 cagcagttgatgcagttgacccacattgattttgactactgtcagattctaagaattcac 795
|||| |||||||||||||| ||||| || |||||||| ||||||||||||||||||||||
Sbjct: 519 cagcggttgatgcagttgatccacactggttttgactgctgtcagattctaagaattcac 460
Query: 796 tgtcggtgcttttataagcatcatctatagcgactttagtatcactgatgaactttggat 855
||||||| |||||||||||||||||||| || ||||| || |||||||||||||||||||
Sbjct: 459 tgtcggtacttttataagcatcatctattgccactttggtgtcactgatgaactttggat 400
Query: 856 gactaacaagattgttgaacaggttttctttaacatactctgctaccttagcaccaccat 915
| || | ||||| |||| || || | |||||||||||| ||||| |||||||||||||
Sbjct: 399 gccttagaagatgactgaagagattctgtttaacatactcagctactttagcaccaccat 340
Query: 916 gaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtct 975
||||||||||||||||||||||||||| ||||| ||||||||| | |||||| ||||||
Sbjct: 339 gaccatcaaaaactccaaaaagaccaataatctgcccatcaacagagtcaattcttgtct 280
Query: 976 catagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatc 1035
| || |||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct: 279 cgtaaaagtcttccatggaagcccttttaccaggggagctcgcatacccatagctaaact 220
Query: 1036 taccattctggctgaggccgccgccgctgac 1066
|||||||||||||||||||||||||||||||
Sbjct: 219 taccattctggctgaggccgccgccgctgac 189
>dbj|AK059302.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-F07, full
insert sequence
Length = 1265
Score = 712 bits (359), Expect = 0.0
Identities = 587/663 (88%)
Strand = Plus / Minus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 961 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 902
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 901 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 842
Query: 379 cctgaatggatctagtcatcgcgacagcttcctcgttagagaccacatcccacagcccat 438
| ||||| ||||| ||||| ||||||| ||||| || | || ||||||||||||||||
Sbjct: 841 catgaatcgatctggtcatgtcgacagcctcctcattggttactacatcccacagcccat 782
Query: 439 cacttgcaaggataagaaactcgagtgtgtcatcaacaacctcctctcggatctccggat 498
|||||||||| || || |||||||| | || ||||| ||| ||||| || ||||| ||||
Sbjct: 781 cacttgcaagaatgaggaactcgagagagtgatcaataacttcctcccgaatctcaggat 722
Query: 499 ccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacac 558
||||||| ||||| |||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct: 721 ccacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaacagcaagcacac 662
Query: 559 caccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgcc 618
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| || |
Sbjct: 661 caccaacacgccatgttcctgcccacattacaaaacctccagcatcttcgatacgttgtc 602
Query: 619 gctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgc 678
||||||| || ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 601 gctcatctgtctgatcaggcttgtgatcttttgaaacagctatagcatttccccccctgc 542
Query: 679 atatgatagccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacag 738
||||||||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||
Sbjct: 541 atatgatagccctagagtctccaacgtttgcaacaaagagacggtcaccaacaaggacag 482
Query: 739 cagttgatgcagttgacccacattgattttgactactgtcagattctaagaattcactgt 798
| |||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 481 cggttgatgcagttgatccacactggttttgactgctgtcagattctaagaattcactgt 422
Query: 799 cggtgcttttataagcatcatctatagcgactttagtatcactgatgaactttggatgac 858
|||| |||||||||||||||||||| || ||||| || |||||||||||||||||||| |
Sbjct: 421 cggtacttttataagcatcatctattgccactttggtgtcactgatgaactttggatgcc 362
Query: 859 taacaagattgttgaacaggttttctttaacatactctgctaccttagcaccaccatgac 918
| | ||||| |||| || || | |||||||||||| ||||| ||||||||||||||||
Sbjct: 361 ttagaagatgactgaagagattctgtttaacatactcagctactttagcaccaccatgac 302
Query: 919 cat 921
|||
Sbjct: 301 cat 299
Score = 60.0 bits (30), Expect = 3e-006
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1037 accattctggctgaggccgccgccgctgac 1066
||||||||||||||||||||||||||||||
Sbjct: 303 accattctggctgaggccgccgccgctgac 274
>gb|CB642176.1|CB642176 OSJNEb02D13.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb02D13 5', mRNA sequence
Length = 822
Score = 702 bits (354), Expect = 0.0
Identities = 569/641 (88%)
Strand = Plus / Minus
Query: 426 tcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaacaacctcctct 485
||||||||||||||||||||||| || | ||||||| | || ||||| ||| ||||
Sbjct: 822 tcccacagcccatcacttgcaagaatgatggactcgagagagtgatcaataactccctcc 763
Query: 486 cggatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaa 545
|| ||||| ||||||||||| ||||| |||| ||||||||||||||||||||| || |||
Sbjct: 762 cgaatctcaggatccacaactacatactgctntaagagtttgtcaccaaaagcgcgagaa 703
Query: 546 acagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatct 605
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 702 acagcaagcacaccaccaacacgccatgttcctgcccacattacaaaacctccagcatct 643
Query: 606 tcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagca 665
|| ||||| || |||||||| || ||||||||||||||||| ||||||||||| ||||||
Sbjct: 642 tcgatacgttgtcgctcatctgtctgatcaggcttgtgatcttttgaaacagctatagca 583
Query: 666 tttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgatca 725
||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| |||
Sbjct: 582 tttccccccctgcatatgatagccctagagtctccaacgtttgcaacaaagagacggtca 523
Query: 726 ccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtcagattct 785
|||||||| ||||| |||||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 522 ccaacaaggacagcggttgatgcagttgatccacactggttttgactgctgtcagattct 463
Query: 786 aagaattcactgtcggtgcttttataagcatcatctatagcgactttagtatcactgatg 845
||||||||||||||||| |||||||||||||||||||| || ||||| || |||||||||
Sbjct: 462 aagaattcactgtcggtacttttataagcatcatctattgccactttggtgtcactgatg 403
Query: 846 aactttggatgactaacaagattgttgaacaggttttctttaacatactctgctacctta 905
||||||||||| || | ||||| |||| || || | |||||||||||| ||||| |||
Sbjct: 402 aactttggatgccttagaagatgactgaagagattctgtttaacatactcagctacttta 343
Query: 906 gcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatca 965
||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||
Sbjct: 342 gcaccaccatgaccatcaaaaactccaaaaagaccaataatctgcccatcaacagagtca 283
Query: 966 atttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcca 1025
||| ||||||| || |||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct: 282 attcttgtctcgtaaaagtcttccatggaagcccttttaccaggggagctcgcataccca 223
Query: 1026 tagctaaatctaccattctggctgaggccgccgccgctgac 1066
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 222 tagctaaacttaccattctggctgaggccgccgccgctgac 182
>gb|AU068447.1|AU068447 AU068447 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30278_5Z, mRNA sequence
Length = 779
Score = 472 bits (238), Expect = e-130
Identities = 395/446 (88%), Gaps = 1/446 (0%)
Strand = Plus / Minus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 479 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 420
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 419 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 360
Query: 379 cctgaatggatctagtcatcgcgacagcttcctcgttagagaccacatcccacagcccat 438
| ||||| ||||| ||||| ||||||| ||||| || | || ||||||||||||||||
Sbjct: 359 catgaatcgatctggtcatgtcgacagcctcctcattggttactacatcccacagcccat 300
Query: 439 cacttgcaaggataagaaactcgagtgtgtcatcaacaacctcctctcggatctccggat 498
|||||||||| || || |||||||| | || ||||| ||| ||||| || ||||| ||||
Sbjct: 299 cacttgcaagaatgaggaactcgagagagtgatcaataacttcctcccgaatctcaggat 240
Query: 499 ccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacac 558
||||||| ||||| |||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct: 239 ccacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaacagcaagcacac 180
Query: 559 caccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgcc 618
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| || |
Sbjct: 179 caccaacacgccatgttcctgcccacattacaaaacctccagcatcttcgatacgttgtc 120
Query: 619 gctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgc 678
||||||| || ||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 119 gctcatctgtctgatcaggcttgtgatcttttgaaacagctatagcatttccccccctgg 60
Query: 679 atat-gatagccctagagtcaccaac 703
|||| ||||||||||||||| |||||
Sbjct: 59 atatggatagccctagagtctccaac 34
>gb|D47609.1|D47609 RICS13205A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 463
Score = 440 bits (222), Expect = e-121
Identities = 381/432 (88%), Gaps = 2/432 (0%)
Strand = Plus / Minus
Query: 545 aacagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacc-tccagcat 603
||||| ||| |||||||||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 431 aacaggaagnacaccaccaanacgccatgt-cctgcccacattacaaaaccctccagcat 373
Query: 604 cttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatag 663
| || ||||| || |||||||| || ||||||||||||||||| ||||||||||| ||||
Sbjct: 372 cctcgatacgttgtcgctcatctgtctgatcaggcttgtgatcttttgaaacagctatag 313
Query: 664 catttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgat 723
||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| |
Sbjct: 312 catttccccccctgcatatgatagccctagagtctccaacgtttgcaacaaagagacggt 253
Query: 724 caccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtcagatt 783
|||||||||| ||||| |||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 252 caccaacaaggacagcggttgatgcagttgatccacactggttttgactgctgtcagatt 193
Query: 784 ctaagaattcactgtcggtgcttttataagcatcatctatagcgactttagtatcactga 843
||||||||||||||||||| |||||||||||||||||||| || ||||| || |||||||
Sbjct: 192 ctaagaattcactgtcggtacttttataagcatcatctattgccactttggtgtcactga 133
Query: 844 tgaactttggatgactaacaagattgttgaacaggttttctttaacatactctgctacct 903
||||||||||||| || | ||||| |||| || || | |||||||||||| ||||| |
Sbjct: 132 tgaactttggatgccttagaagatgactgaagagattctgtttaacatactcagctactt 73
Query: 904 tagcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaat 963
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct: 72 tagcaccaccatgaccatcaaaaactccaaaaagaccaataatctgcccatcaacagagt 13
Query: 964 caatttttgtct 975
||||| ||||||
Sbjct: 12 caattcttgtct 1
>gb|D47182.1|D47182 RICS12353A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 419
Score = 432 bits (218), Expect = e-118
Identities = 371/421 (88%), Gaps = 2/421 (0%)
Strand = Plus / Minus
Query: 555 acaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgc 614
||||||||||| |||||||| || |||||| |||||||||| ||||||||| |||||
Sbjct: 419 acaccaccaacacgccatgt--cttgccacattacaaaacctcaagcatcttcgatacgt 362
Query: 615 tgccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttcc 674
|| |||||||| || ||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 361 tgtcgctcatctgtctgatcaggcttgtgatcttttgaaacagctatagcatttcccccc 302
Query: 675 ctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagt 734
||||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||||
Sbjct: 301 ctgcatatgatagccctagagtctccaacgtttgcaacaaagagacggtcaccaacaagg 242
Query: 735 acagcagttgatgcagttgacccacattgattttgactactgtcagattctaagaattca 794
||||| |||||||||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct: 241 acagcggttgatgcagttgatccacactggttttgactgctgtcagattctaagaattca 182
Query: 795 ctgtcggtgcttttataagcatcatctatagcgactttagtatcactgatgaactttgga 854
|||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||
Sbjct: 181 ctgtcggtacttttataagcatcatctattgccactttggtgtcactgatgaactttgga 122
Query: 855 tgactaacaagattgttgaacaggttttctttaacatactctgctaccttagcaccacca 914
|| || | ||||| |||| || || | |||||||||||| ||||| ||||||||||||
Sbjct: 121 tgccttagaagatgactgaagagattctgtttaacatactcagctactttagcaccacca 62
Query: 915 tgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtc 974
|||||||||||||||||||||||||||| ||||| ||||||||| | |||||| |||||
Sbjct: 61 tgaccatcaaaaactccaaaaagaccaataatctgcccatcaacagagtcaattcttgtc 2
Query: 975 t 975
|
Sbjct: 1 t 1
>gb|D47633.1|D47633 RICS13246A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 421
Score = 355 bits (179), Expect = 3e-095
Identities = 305/346 (88%), Gaps = 1/346 (0%)
Strand = Plus / Minus
Query: 631 gatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgatagccc 690
|||||||||||||||| |||||| |||| |||||||| || ||||||||||||||||||
Sbjct: 346 gatcaggcttgtgatcttttgaancagctatagcattcccccccctgcatatgatagccc 287
Query: 691 tagagtcacc-aacatttgcgacgaagagacgatcaccaacaagtacagcagttgatgca 749
||||||| || ||| ||||| || |||||||| ||||||||||| ||||| |||||||||
Sbjct: 286 tagagtcccccaacgtttgcaacaaagagacggtcaccaacaaggacagcggttgatgca 227
Query: 750 gttgacccacattgattttgactactgtcagattctaagaattcactgtcggtgctttta 809
||||| ||||| || |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 226 gttgatccacactggttttgactgctgtcagattctaagaattcactgtcggtactttta 167
Query: 810 taagcatcatctatagcgactttagtatcactgatgaactttggatgactaacaagattg 869
|||||||||||||| || ||||| || |||||||||||||||||||| || | |||||
Sbjct: 166 taagcatcatctattgccactttggtgtcactgatgaactttggatgccttagaagatga 107
Query: 870 ttgaacaggttttctttaacatactctgctaccttagcaccaccatgaccatcaaaaact 929
|||| || || | |||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 106 ctgaagagattctgtttaacatactcagctactttagcaccaccatgaccatcaaaaact 47
Query: 930 ccaaaaagaccaactatctggccatcaacacaatcaatttttgtct 975
||||||||||||| ||||| ||||||||| | |||||| ||||||
Sbjct: 46 ccaaaaagaccaataatctgcccatcaacagagtcaattcttgtct 1
>gb|D47373.1|D47373 RICS12718A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 347
Score = 349 bits (176), Expect = 2e-093
Identities = 306/347 (88%), Gaps = 2/347 (0%)
Strand = Plus / Minus
Query: 630 tgatcaggcttgtgatcctttgaaaca-gcaatagcatttccttccctgcatatgatagc 688
||||||||||||||| ||||||||||| || |||||||| || ||||||||||||||||
Sbjct: 346 tgatcaggcttgtga-cctttgaaacaagctatagcattcccccccctgcatatgatagc 288
Query: 689 cctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgatgc 748
||||||| | ||||| ||||| || |||||||| ||||||||||| ||||| ||||||||
Sbjct: 287 cctagagnctccaacgtttgcaacaaagagacggtcaccaacaaggacagcggttgatgc 228
Query: 749 agttgacccacattgattttgactactgtcagattctaagaattcactgtcggtgctttt 808
|||||| ||||| || |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 227 agttgatccacactggttttgactgctgtcagattctaagaattcactgtcggtactttt 168
Query: 809 ataagcatcatctatagcgactttagtatcactgatgaactttggatgactaacaagatt 868
||||||||||||||| || ||||| || |||||||||||||||||||| || | |||||
Sbjct: 167 ataagcatcatctattgccactttggtgtcactgatgaactttggatgccttagaagatg 108
Query: 869 gttgaacaggttttctttaacatactctgctaccttagcaccaccatgaccatcaaaaac 928
|||| || || | |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 107 actgaagagattctgtttaacatactcagctactttagcaccaccatgaccatcaaaaac 48
Query: 929 tccaaaaagaccaactatctggccatcaacacaatcaatttttgtct 975
|||||||||||||| ||||| ||||||||| | |||||| ||||||
Sbjct: 47 tccaaaaagaccaataatctgcccatcaacagagtcaattcttgtct 1
>gb|D47314.1|D47314 RICS12611A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 330
Score = 333 bits (168), Expect = 1e-088
Identities = 286/324 (88%), Gaps = 1/324 (0%)
Strand = Plus / Minus
Query: 652 aaacagcaatagcatttccttccctgcatatgatagccctagagtcaccaacatttgcga 711
||||||| ||||||||||| ||||||||||||||||||||||||| ||||| || || |
Sbjct: 323 aaacagctatagcatttccccccctgcatatgatagccctagagtctccaacgtt-gcaa 265
Query: 712 cgaagagacgatcaccaacaagtacagcagttgatgcagttgacccacattgattttgac 771
| |||||||| ||||||||||| ||||| |||||||||||||| ||||| || |||||||
Sbjct: 264 caaagagacggtcaccaacaaggacagcggttgatgcagttgatccacactggttttgac 205
Query: 772 tactgtcagattctaagaattcactgtcggtgcttttataagcatcatctatagcgactt 831
| ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct: 204 tgctgtcagattctaagaattcactgtcggtacttttataagcatcatctattgccactt 145
Query: 832 tagtatcactgatgaactttggatgactaacaagattgttgaacaggttttctttaacat 891
| || |||||||||||||||||||| || | ||||| |||| || || | ||||||||
Sbjct: 144 tggtgtcactgatgaactttggatgccttagaagatgactgaagagattctgtttaacat 85
Query: 892 actctgctaccttagcaccaccatgaccatcaaaaactccaaaaagaccaactatctggc 951
|||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 84 actcagctactttagcaccaccatgaccatcaaaaactccaaaaagaccaataatctgcc 25
Query: 952 catcaacacaatcaatttttgtct 975
|||||||| | |||||| ||||||
Sbjct: 24 catcaacagagtcaattcttgtct 1
>gb|AU096177.1|AU096177 AU096177 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S12353, mRNA sequence
Length = 681
Score = 299 bits (151), Expect = 2e-078
Identities = 264/302 (87%)
Strand = Plus / Minus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 366 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 307
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 306 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 247
Query: 379 cctgaatggatctagtcatcgcgacagcttcctcgttagagaccacatcccacagcccat 438
| ||||| ||||| ||||| ||||||| ||||| || | || ||||||||||||||||
Sbjct: 246 catgaatcgatctggtcatgtcgacagcctcctcattggttactacatcccacagcccat 187
Query: 439 cacttgcaaggataagaaactcgagtgtgtcatcaacaacctcctctcggatctccggat 498
|||||||||| || || |||||||| | || ||||| ||| ||||| || ||||| ||||
Sbjct: 186 cacttgcaagaatgaggaactcgagagagtgatcaataacttcctcccgaatctcaggat 127
Query: 499 ccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacac 558
|||||| ||||| |||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct: 126 ncacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaacagcaagcacac 67
Query: 559 ca 560
||
Sbjct: 66 ca 65
>gb|AU225798.1|AU225798 AU225798 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0812, mRNA sequence
Length = 463
Score = 264 bits (133), Expect = 9e-068
Identities = 235/269 (87%)
Strand = Plus / Plus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 180 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 239
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 240 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 299
Query: 379 cctgaatggatctagtcatcgcgacagcttcctcgttagagaccacatcccacagcccat 438
| ||||| ||||| ||||| ||||||| ||||| || | || ||||||||||||||||
Sbjct: 300 catgaatcgatctggtcatgtcgacagcctcctcattggttactacatcccacagcccat 359
Query: 439 cacttgcaaggataagaaactcgagtgtgtcatcaacaacctcctctcggatctccggat 498
|||||||||| || || |||||||| | || ||||| ||| ||||| || ||||| ||||
Sbjct: 360 cacttgcaagaatgaggaactcgagagagtgatcaataacttcctcccgaatctcaggat 419
Query: 499 ccacaaccacatattgctttaagagtttg 527
||||||| ||||| |||||||||||||||
Sbjct: 420 ccacaactacatactgctttaagagtttg 448
>gb|AACV01010620.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010620, whole
genome shotgun sequence
Length = 55477
Score = 204 bits (103), Expect = 7e-050
Identities = 145/159 (91%)
Strand = Plus / Plus
Query: 664 catttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgat 723
||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| |
Sbjct: 3536 catttccccccctgcatatgatagccctagagtctccaacgtttgcaacaaagagacggt 3595
Query: 724 caccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtcagatt 783
|||||||||| ||||| |||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 3596 caccaacaaggacagcggttgatgcagttgatccacactggttttgactgctgtcagatt 3655
Query: 784 ctaagaattcactgtcggtgcttttataagcatcatcta 822
||||||||||||||||||| |||||||||||||||||||
Sbjct: 3656 ctaagaattcactgtcggtacttttataagcatcatcta 3694
Score = 176 bits (89), Expect = 2e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 1860 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 1919
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 1920 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 1979
Query: 379 cctgaatggatctagtcatcgcgacagcttcct 411
| ||||| ||||| ||||| ||||||| ||||
Sbjct: 1980 catgaatcgatctggtcatgtcgacagcctcct 2012
Score = 161 bits (81), Expect = 1e-036
Identities = 120/133 (90%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
|||||||||||||||||||||||||| ||||| ||||||||| | |||||| |||||||
Sbjct: 4254 accatcaaaaactccaaaaagaccaataatctgcccatcaacagagtcaattcttgtctc 4313
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
|| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 4314 gtaaaagtcttccatggaagcccttttaccaggggagctcgcatacccatagctaaactt 4373
Query: 1037 accattctggctg 1049
|||||||||||||
Sbjct: 4374 accattctggctg 4386
Score = 123 bits (62), Expect = 2e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 489 atctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaaca 548
||||| ||||||||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 2929 atctcaggatccacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaaca 2988
Query: 549 gcaagtacaccaccaacgcgccatgttcct 578
||||| ||||||||||| ||||||||||||
Sbjct: 2989 gcaagcacaccaccaacacgccatgttcct 3018
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 576 cctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatca 635
||||||||||| |||||||||||||||||||| ||||| || |||||||| || ||||||
Sbjct: 3095 cctgcccacattacaaaacctccagcatcttcgatacgttgtcgctcatctgtctgatca 3154
Query: 636 ggcttgtgatcctttgaaacagcaatagc 664
||||||||||| ||||||||||| |||||
Sbjct: 3155 ggcttgtgatcttttgaaacagctatagc 3183
Score = 71.9 bits (36), Expect = 7e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 828 actttagtatcactgatgaactttggatgactaacaagattgttgaacaggttttcttta 887
||||| || |||||||||||||||||||| || | ||||| |||| || || | ||||
Sbjct: 3790 actttggtgtcactgatgaactttggatgccttagaagatgactgaagagattctgttta 3849
Query: 888 acatactctgctaccttagcaccaccatgacc 919
|||||||| ||||| |||||||||||||||||
Sbjct: 3850 acatactcagctactttagcaccaccatgacc 3881
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 423 acatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaacaacctcc 482
|||||||||||||||||||||||||| || || |||||||| | || ||||| ||| |||
Sbjct: 2119 acatcccacagcccatcacttgcaagaatgaggaactcgagagagtgatcaataacttcc 2178
Query: 483 tc 484
||
Sbjct: 2179 tc 2180
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 204 bits (103), Expect = 7e-050
Identities = 145/159 (91%)
Strand = Plus / Plus
Query: 664 catttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgat 723
||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| |
Sbjct: 1080588 catttccccccctgcatatgatagccctagagtctccaacgtttgcaacaaagagacggt 1080647
Query: 724 caccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtcagatt 783
|||||||||| ||||| |||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 1080648 caccaacaaggacagcggttgatgcagttgatccacactggttttgactgctgtcagatt 1080707
Query: 784 ctaagaattcactgtcggtgcttttataagcatcatcta 822
||||||||||||||||||| |||||||||||||||||||
Sbjct: 1080708 ctaagaattcactgtcggtacttttataagcatcatcta 1080746
Score = 176 bits (89), Expect = 2e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 1078918 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 1078977
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 1078978 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 1079037
Query: 379 cctgaatggatctagtcatcgcgacagcttcct 411
| ||||| ||||| ||||| ||||||| ||||
Sbjct: 1079038 catgaatcgatctggtcatgtcgacagcctcct 1079070
Score = 161 bits (81), Expect = 1e-036
Identities = 120/133 (90%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
|||||||||||||||||||||||||| ||||| ||||||||| | |||||| |||||||
Sbjct: 1081306 accatcaaaaactccaaaaagaccaataatctgcccatcaacagagtcaattcttgtctc 1081365
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
|| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 1081366 gtaaaagtcttccatggaagcccttttaccaggggagctcgcatacccatagctaaactt 1081425
Query: 1037 accattctggctg 1049
|||||||||||||
Sbjct: 1081426 accattctggctg 1081438
Score = 123 bits (62), Expect = 2e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 489 atctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaaca 548
||||| ||||||||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 1079981 atctcaggatccacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaaca 1080040
Query: 549 gcaagtacaccaccaacgcgccatgttcct 578
||||| ||||||||||| ||||||||||||
Sbjct: 1080041 gcaagcacaccaccaacacgccatgttcct 1080070
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 576 cctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatca 635
||||||||||| |||||||||||||||||||| ||||| || |||||||| || ||||||
Sbjct: 1080147 cctgcccacattacaaaacctccagcatcttcgatacgttgtcgctcatctgtctgatca 1080206
Query: 636 ggcttgtgatcctttgaaacagcaatagc 664
||||||||||| ||||||||||| |||||
Sbjct: 1080207 ggcttgtgatcttttgaaacagctatagc 1080235
Score = 71.9 bits (36), Expect = 7e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 828 actttagtatcactgatgaactttggatgactaacaagattgttgaacaggttttcttta 887
||||| || |||||||||||||||||||| || | ||||| |||| || || | ||||
Sbjct: 1080842 actttggtgtcactgatgaactttggatgccttagaagatgactgaagagattctgttta 1080901
Query: 888 acatactctgctaccttagcaccaccatgacc 919
|||||||| ||||| |||||||||||||||||
Sbjct: 1080902 acatactcagctactttagcaccaccatgacc 1080933
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 423 acatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaacaacctcc 482
|||||||||||||||||||||||||| || || |||||||| | || ||||| ||| |||
Sbjct: 1079177 acatcccacagcccatcacttgcaagaatgaggaactcgagagagtgatcaataacttcc 1079236
Query: 483 tc 484
||
Sbjct: 1079237 tc 1079238
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 204 bits (103), Expect = 7e-050
Identities = 145/159 (91%)
Strand = Plus / Plus
Query: 664 catttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgat 723
||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| |
Sbjct: 11273992 catttccccccctgcatatgatagccctagagtctccaacgtttgcaacaaagagacggt 11274051
Query: 724 caccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtcagatt 783
|||||||||| ||||| |||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 11274052 caccaacaaggacagcggttgatgcagttgatccacactggttttgactgctgtcagatt 11274111
Query: 784 ctaagaattcactgtcggtgcttttataagcatcatcta 822
||||||||||||||||||| |||||||||||||||||||
Sbjct: 11274112 ctaagaattcactgtcggtacttttataagcatcatcta 11274150
Score = 176 bits (89), Expect = 2e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 11272316 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 11272375
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 11272376 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 11272435
Query: 379 cctgaatggatctagtcatcgcgacagcttcct 411
| ||||| ||||| ||||| ||||||| ||||
Sbjct: 11272436 catgaatcgatctggtcatgtcgacagcctcct 11272468
Score = 161 bits (81), Expect = 1e-036
Identities = 120/133 (90%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
|||||||||||||||||||||||||| ||||| ||||||||| | |||||| |||||||
Sbjct: 11274710 accatcaaaaactccaaaaagaccaataatctgcccatcaacagagtcaattcttgtctc 11274769
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
|| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 11274770 gtaaaagtcttccatggaagcccttttaccaggggagctcgcatacccatagctaaactt 11274829
Query: 1037 accattctggctg 1049
|||||||||||||
Sbjct: 11274830 accattctggctg 11274842
Score = 123 bits (62), Expect = 2e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 489 atctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaaca 548
||||| ||||||||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 11273385 atctcaggatccacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaaca 11273444
Query: 549 gcaagtacaccaccaacgcgccatgttcct 578
||||| ||||||||||| ||||||||||||
Sbjct: 11273445 gcaagcacaccaccaacacgccatgttcct 11273474
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 576 cctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatca 635
||||||||||| |||||||||||||||||||| ||||| || |||||||| || ||||||
Sbjct: 11273551 cctgcccacattacaaaacctccagcatcttcgatacgttgtcgctcatctgtctgatca 11273610
Query: 636 ggcttgtgatcctttgaaacagcaatagc 664
||||||||||| ||||||||||| |||||
Sbjct: 11273611 ggcttgtgatcttttgaaacagctatagc 11273639
Score = 71.9 bits (36), Expect = 7e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 828 actttagtatcactgatgaactttggatgactaacaagattgttgaacaggttttcttta 887
||||| || |||||||||||||||||||| || | ||||| |||| || || | ||||
Sbjct: 11274246 actttggtgtcactgatgaactttggatgccttagaagatgactgaagagattctgttta 11274305
Query: 888 acatactctgctaccttagcaccaccatgacc 919
|||||||| ||||| |||||||||||||||||
Sbjct: 11274306 acatactcagctactttagcaccaccatgacc 11274337
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 423 acatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaacaacctcc 482
|||||||||||||||||||||||||| || || |||||||| | || ||||| ||| |||
Sbjct: 11272575 acatcccacagcccatcacttgcaagaatgaggaactcgagagagtgatcaataacttcc 11272634
Query: 483 tc 484
||
Sbjct: 11272635 tc 11272636
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 204 bits (103), Expect = 7e-050
Identities = 145/159 (91%)
Strand = Plus / Plus
Query: 664 catttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgat 723
||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| |
Sbjct: 30418091 catttccccccctgcatatgatagccctagagtctccaacgtttgcaacaaagagacggt 30418150
Query: 724 caccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtcagatt 783
|||||||||| ||||| |||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 30418151 caccaacaaggacagcggttgatgcagttgatccacactggttttgactgctgtcagatt 30418210
Query: 784 ctaagaattcactgtcggtgcttttataagcatcatcta 822
||||||||||||||||||| |||||||||||||||||||
Sbjct: 30418211 ctaagaattcactgtcggtacttttataagcatcatcta 30418249
Score = 176 bits (89), Expect = 2e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 30416415 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 30416474
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 30416475 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 30416534
Query: 379 cctgaatggatctagtcatcgcgacagcttcct 411
| ||||| ||||| ||||| ||||||| ||||
Sbjct: 30416535 catgaatcgatctggtcatgtcgacagcctcct 30416567
Score = 161 bits (81), Expect = 1e-036
Identities = 120/133 (90%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
|||||||||||||||||||||||||| ||||| ||||||||| | |||||| |||||||
Sbjct: 30418809 accatcaaaaactccaaaaagaccaataatctgcccatcaacagagtcaattcttgtctc 30418868
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
|| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 30418869 gtaaaagtcttccatggaagcccttttaccaggggagctcgcatacccatagctaaactt 30418928
Query: 1037 accattctggctg 1049
|||||||||||||
Sbjct: 30418929 accattctggctg 30418941
Score = 123 bits (62), Expect = 2e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 489 atctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaaca 548
||||| ||||||||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 30417484 atctcaggatccacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaaca 30417543
Query: 549 gcaagtacaccaccaacgcgccatgttcct 578
||||| ||||||||||| ||||||||||||
Sbjct: 30417544 gcaagcacaccaccaacacgccatgttcct 30417573
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 576 cctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatca 635
||||||||||| |||||||||||||||||||| ||||| || |||||||| || ||||||
Sbjct: 30417650 cctgcccacattacaaaacctccagcatcttcgatacgttgtcgctcatctgtctgatca 30417709
Query: 636 ggcttgtgatcctttgaaacagcaatagc 664
||||||||||| ||||||||||| |||||
Sbjct: 30417710 ggcttgtgatcttttgaaacagctatagc 30417738
Score = 71.9 bits (36), Expect = 7e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 828 actttagtatcactgatgaactttggatgactaacaagattgttgaacaggttttcttta 887
||||| || |||||||||||||||||||| || | ||||| |||| || || | ||||
Sbjct: 30418345 actttggtgtcactgatgaactttggatgccttagaagatgactgaagagattctgttta 30418404
Query: 888 acatactctgctaccttagcaccaccatgacc 919
|||||||| ||||| |||||||||||||||||
Sbjct: 30418405 acatactcagctactttagcaccaccatgacc 30418436
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 423 acatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaacaacctcc 482
|||||||||||||||||||||||||| || || |||||||| | || ||||| ||| |||
Sbjct: 30416674 acatcccacagcccatcacttgcaagaatgaggaactcgagagagtgatcaataacttcc 30416733
Query: 483 tc 484
||
Sbjct: 30416734 tc 30416735
>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02,
complete sequence
Length = 153623
Score = 204 bits (103), Expect = 7e-050
Identities = 145/159 (91%)
Strand = Plus / Plus
Query: 664 catttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgat 723
||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| |
Sbjct: 35903 catttccccccctgcatatgatagccctagagtctccaacgtttgcaacaaagagacggt 35962
Query: 724 caccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtcagatt 783
|||||||||| ||||| |||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 35963 caccaacaaggacagcggttgatgcagttgatccacactggttttgactgctgtcagatt 36022
Query: 784 ctaagaattcactgtcggtgcttttataagcatcatcta 822
||||||||||||||||||| |||||||||||||||||||
Sbjct: 36023 ctaagaattcactgtcggtacttttataagcatcatcta 36061
Score = 176 bits (89), Expect = 2e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 34233 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 34292
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 34293 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 34352
Query: 379 cctgaatggatctagtcatcgcgacagcttcct 411
| ||||| ||||| ||||| ||||||| ||||
Sbjct: 34353 catgaatcgatctggtcatgtcgacagcctcct 34385
Score = 161 bits (81), Expect = 1e-036
Identities = 120/133 (90%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
|||||||||||||||||||||||||| ||||| ||||||||| | |||||| |||||||
Sbjct: 36621 accatcaaaaactccaaaaagaccaataatctgcccatcaacagagtcaattcttgtctc 36680
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
|| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 36681 gtaaaagtcttccatggaagcccttttaccaggggagctcgcatacccatagctaaactt 36740
Query: 1037 accattctggctg 1049
|||||||||||||
Sbjct: 36741 accattctggctg 36753
Score = 123 bits (62), Expect = 2e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 489 atctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaaca 548
||||| ||||||||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 35296 atctcaggatccacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaaca 35355
Query: 549 gcaagtacaccaccaacgcgccatgttcct 578
||||| ||||||||||| ||||||||||||
Sbjct: 35356 gcaagcacaccaccaacacgccatgttcct 35385
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 576 cctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatca 635
||||||||||| |||||||||||||||||||| ||||| || |||||||| || ||||||
Sbjct: 35462 cctgcccacattacaaaacctccagcatcttcgatacgttgtcgctcatctgtctgatca 35521
Query: 636 ggcttgtgatcctttgaaacagcaatagc 664
||||||||||| ||||||||||| |||||
Sbjct: 35522 ggcttgtgatcttttgaaacagctatagc 35550
Score = 71.9 bits (36), Expect = 7e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 828 actttagtatcactgatgaactttggatgactaacaagattgttgaacaggttttcttta 887
||||| || |||||||||||||||||||| || | ||||| |||| || || | ||||
Sbjct: 36157 actttggtgtcactgatgaactttggatgccttagaagatgactgaagagattctgttta 36216
Query: 888 acatactctgctaccttagcaccaccatgacc 919
|||||||| ||||| |||||||||||||||||
Sbjct: 36217 acatactcagctactttagcaccaccatgacc 36248
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 423 acatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaacaacctcc 482
|||||||||||||||||||||||||| || || |||||||| | || ||||| ||| |||
Sbjct: 34492 acatcccacagcccatcacttgcaagaatgaggaactcgagagagtgatcaataacttcc 34551
Query: 483 tc 484
||
Sbjct: 34552 tc 34553
>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23,
complete sequence
Length = 149353
Score = 204 bits (103), Expect = 7e-050
Identities = 145/159 (91%)
Strand = Plus / Plus
Query: 664 catttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgat 723
||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| |
Sbjct: 116520 catttccccccctgcatatgatagccctagagtctccaacgtttgcaacaaagagacggt 116579
Query: 724 caccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtcagatt 783
|||||||||| ||||| |||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 116580 caccaacaaggacagcggttgatgcagttgatccacactggttttgactgctgtcagatt 116639
Query: 784 ctaagaattcactgtcggtgcttttataagcatcatcta 822
||||||||||||||||||| |||||||||||||||||||
Sbjct: 116640 ctaagaattcactgtcggtacttttataagcatcatcta 116678
Score = 176 bits (89), Expect = 2e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 114850 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 114909
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 114910 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 114969
Query: 379 cctgaatggatctagtcatcgcgacagcttcct 411
| ||||| ||||| ||||| ||||||| ||||
Sbjct: 114970 catgaatcgatctggtcatgtcgacagcctcct 115002
Score = 161 bits (81), Expect = 1e-036
Identities = 120/133 (90%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
|||||||||||||||||||||||||| ||||| ||||||||| | |||||| |||||||
Sbjct: 117238 accatcaaaaactccaaaaagaccaataatctgcccatcaacagagtcaattcttgtctc 117297
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
|| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 117298 gtaaaagtcttccatggaagcccttttaccaggggagctcgcatacccatagctaaactt 117357
Query: 1037 accattctggctg 1049
|||||||||||||
Sbjct: 117358 accattctggctg 117370
Score = 123 bits (62), Expect = 2e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 489 atctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaaca 548
||||| ||||||||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 115913 atctcaggatccacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaaca 115972
Query: 549 gcaagtacaccaccaacgcgccatgttcct 578
||||| ||||||||||| ||||||||||||
Sbjct: 115973 gcaagcacaccaccaacacgccatgttcct 116002
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 576 cctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatca 635
||||||||||| |||||||||||||||||||| ||||| || |||||||| || ||||||
Sbjct: 116079 cctgcccacattacaaaacctccagcatcttcgatacgttgtcgctcatctgtctgatca 116138
Query: 636 ggcttgtgatcctttgaaacagcaatagc 664
||||||||||| ||||||||||| |||||
Sbjct: 116139 ggcttgtgatcttttgaaacagctatagc 116167
Score = 71.9 bits (36), Expect = 7e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 828 actttagtatcactgatgaactttggatgactaacaagattgttgaacaggttttcttta 887
||||| || |||||||||||||||||||| || | ||||| |||| || || | ||||
Sbjct: 116774 actttggtgtcactgatgaactttggatgccttagaagatgactgaagagattctgttta 116833
Query: 888 acatactctgctaccttagcaccaccatgacc 919
|||||||| ||||| |||||||||||||||||
Sbjct: 116834 acatactcagctactttagcaccaccatgacc 116865
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 423 acatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaacaacctcc 482
|||||||||||||||||||||||||| || || |||||||| | || ||||| ||| |||
Sbjct: 115109 acatcccacagcccatcacttgcaagaatgaggaactcgagagagtgatcaataacttcc 115168
Query: 483 tc 484
||
Sbjct: 115169 tc 115170
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 204 bits (103), Expect = 7e-050
Identities = 145/159 (91%)
Strand = Plus / Plus
Query: 664 catttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgat 723
||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| |
Sbjct: 33685460 catttccccccctgcatatgatagccctagagtctccaacgtttgcaacaaagagacggt 33685519
Query: 724 caccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtcagatt 783
|||||||||| ||||| |||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 33685520 caccaacaaggacagcggttgatgcagttgatccacactggttttgactgctgtcagatt 33685579
Query: 784 ctaagaattcactgtcggtgcttttataagcatcatcta 822
||||||||||||||||||| |||||||||||||||||||
Sbjct: 33685580 ctaagaattcactgtcggtacttttataagcatcatcta 33685618
Score = 176 bits (89), Expect = 2e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 33683790 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 33683849
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 33683850 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 33683909
Query: 379 cctgaatggatctagtcatcgcgacagcttcct 411
| ||||| ||||| ||||| ||||||| ||||
Sbjct: 33683910 catgaatcgatctggtcatgtcgacagcctcct 33683942
Score = 161 bits (81), Expect = 1e-036
Identities = 120/133 (90%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
|||||||||||||||||||||||||| ||||| ||||||||| | |||||| |||||||
Sbjct: 33686178 accatcaaaaactccaaaaagaccaataatctgcccatcaacagagtcaattcttgtctc 33686237
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
|| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 33686238 gtaaaagtcttccatggaagcccttttaccaggggagctcgcatacccatagctaaactt 33686297
Query: 1037 accattctggctg 1049
|||||||||||||
Sbjct: 33686298 accattctggctg 33686310
Score = 123 bits (62), Expect = 2e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 489 atctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaaca 548
||||| ||||||||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 33684853 atctcaggatccacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaaca 33684912
Query: 549 gcaagtacaccaccaacgcgccatgttcct 578
||||| ||||||||||| ||||||||||||
Sbjct: 33684913 gcaagcacaccaccaacacgccatgttcct 33684942
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 576 cctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatca 635
||||||||||| |||||||||||||||||||| ||||| || |||||||| || ||||||
Sbjct: 33685019 cctgcccacattacaaaacctccagcatcttcgatacgttgtcgctcatctgtctgatca 33685078
Query: 636 ggcttgtgatcctttgaaacagcaatagc 664
||||||||||| ||||||||||| |||||
Sbjct: 33685079 ggcttgtgatcttttgaaacagctatagc 33685107
Score = 71.9 bits (36), Expect = 7e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 828 actttagtatcactgatgaactttggatgactaacaagattgttgaacaggttttcttta 887
||||| || |||||||||||||||||||| || | ||||| |||| || || | ||||
Sbjct: 33685714 actttggtgtcactgatgaactttggatgccttagaagatgactgaagagattctgttta 33685773
Query: 888 acatactctgctaccttagcaccaccatgacc 919
|||||||| ||||| |||||||||||||||||
Sbjct: 33685774 acatactcagctactttagcaccaccatgacc 33685805
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 423 acatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaacaacctcc 482
|||||||||||||||||||||||||| || || |||||||| | || ||||| ||| |||
Sbjct: 33684049 acatcccacagcccatcacttgcaagaatgaggaactcgagagagtgatcaataacttcc 33684108
Query: 483 tc 484
||
Sbjct: 33684109 tc 33684110
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence
Length = 181577
Score = 204 bits (103), Expect = 7e-050
Identities = 145/159 (91%)
Strand = Plus / Plus
Query: 664 catttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgat 723
||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| |
Sbjct: 116638 catttccccccctgcatatgatagccctagagtctccaacgtttgcaacaaagagacggt 116697
Query: 724 caccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtcagatt 783
|||||||||| ||||| |||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 116698 caccaacaaggacagcggttgatgcagttgatccacactggttttgactgctgtcagatt 116757
Query: 784 ctaagaattcactgtcggtgcttttataagcatcatcta 822
||||||||||||||||||| |||||||||||||||||||
Sbjct: 116758 ctaagaattcactgtcggtacttttataagcatcatcta 116796
Score = 176 bits (89), Expect = 2e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 114968 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 115027
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 115028 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 115087
Query: 379 cctgaatggatctagtcatcgcgacagcttcct 411
| ||||| ||||| ||||| ||||||| ||||
Sbjct: 115088 catgaatcgatctggtcatgtcgacagcctcct 115120
Score = 161 bits (81), Expect = 1e-036
Identities = 120/133 (90%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
|||||||||||||||||||||||||| ||||| ||||||||| | |||||| |||||||
Sbjct: 117356 accatcaaaaactccaaaaagaccaataatctgcccatcaacagagtcaattcttgtctc 117415
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
|| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 117416 gtaaaagtcttccatggaagcccttttaccaggggagctcgcatacccatagctaaactt 117475
Query: 1037 accattctggctg 1049
|||||||||||||
Sbjct: 117476 accattctggctg 117488
Score = 123 bits (62), Expect = 2e-025
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 489 atctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaaca 548
||||| ||||||||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 116031 atctcaggatccacaactacatactgctttaagagtttgtcaccaaaagcgcgagaaaca 116090
Query: 549 gcaagtacaccaccaacgcgccatgttcct 578
||||| ||||||||||| ||||||||||||
Sbjct: 116091 gcaagcacaccaccaacacgccatgttcct 116120
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 576 cctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatca 635
||||||||||| |||||||||||||||||||| ||||| || |||||||| || ||||||
Sbjct: 116197 cctgcccacattacaaaacctccagcatcttcgatacgttgtcgctcatctgtctgatca 116256
Query: 636 ggcttgtgatcctttgaaacagcaatagc 664
||||||||||| ||||||||||| |||||
Sbjct: 116257 ggcttgtgatcttttgaaacagctatagc 116285
Score = 71.9 bits (36), Expect = 7e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 828 actttagtatcactgatgaactttggatgactaacaagattgttgaacaggttttcttta 887
||||| || |||||||||||||||||||| || | ||||| |||| || || | ||||
Sbjct: 116892 actttggtgtcactgatgaactttggatgccttagaagatgactgaagagattctgttta 116951
Query: 888 acatactctgctaccttagcaccaccatgacc 919
|||||||| ||||| |||||||||||||||||
Sbjct: 116952 acatactcagctactttagcaccaccatgacc 116983
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 423 acatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaacaacctcc 482
|||||||||||||||||||||||||| || || |||||||| | || ||||| ||| |||
Sbjct: 115227 acatcccacagcccatcacttgcaagaatgaggaactcgagagagtgatcaataacttcc 115286
Query: 483 tc 484
||
Sbjct: 115287 tc 115288
>dbj|AK071637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101G03, full
insert sequence
Length = 1283
Score = 184 bits (93), Expect = 7e-044
Identities = 258/313 (82%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||||||||| | ||||| ||||| || |||||||| |||||||| || ||||||
Sbjct: 820 acagcttcctcgttggtcaccacgtcccagaggccatcactagcaaggatgaggaactcg 761
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | || || |||||||| |||||| ||||| |||||||||||||||| | |
Sbjct: 760 agagagctgtcgaccacctcctccttgatctctggatcagcaaccacatattgcttcagg 701
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
|||||||||||||| || || || |||||||| |||||||| |||||||||||||| |||
Sbjct: 700 agtttgtcaccaaatgctcgagagacagcaagaacaccacccacgcgccatgttccagcc 641
Query: 582 cacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggcttg 641
|||||||||||||| |||||||| || || | ||||| ||| || | ||||||||||||
Sbjct: 640 cacatcacaaaaccaccagcatcctctatcctctgcctctcgtctgactgatcaggcttg 581
Query: 642 tgatcctttgaaacagcaatagcatttccttccctgcatatgatagccctagagtcacca 701
|| || |||| ||||| ||||||| |||| | || || |||| ||||||||| || |||
Sbjct: 580 tggtctcttgacacagctatagcatctcctcctctacaaatgacagccctagaatctcca 521
Query: 702 acatttgcgacga 714
|||||||| ||||
Sbjct: 520 acatttgcaacga 508
Score = 91.7 bits (46), Expect = 7e-016
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 909 ccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatt 968
||||||||||||||||| || ||||| || ||||| ||| ||||| |||| |||||||
Sbjct: 310 ccaccatgaccatcaaagacaccaaacagtccaacggtctctccatcgacaccatcaatt 251
Query: 969 tttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatag 1028
| || ||||||||||| |||||||| | ||||| ||||| ||||| ||||| ||||||
Sbjct: 250 ctggtgtcatagaagtcctccatggaggatctttttccaggagagctcgcataaccatag 191
Query: 1029 ctaaatctaccatt 1042
|||||| |||||||
Sbjct: 190 ctaaatttaccatt 177
>gb|AU197922.1|AU197922 AU197922 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S13205, mRNA sequence
Length = 454
Score = 172 bits (87), Expect = 3e-040
Identities = 126/139 (90%)
Strand = Plus / Minus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 139 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 80
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 79 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 20
Query: 379 cctgaatggatctagtcat 397
| ||||| ||||| |||||
Sbjct: 19 catgaatcgatctggtcat 1
>gb|AU176540.1|AU176540 AU176540 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S12611, mRNA sequence
Length = 451
Score = 168 bits (85), Expect = 4e-039
Identities = 121/133 (90%)
Strand = Plus / Minus
Query: 259 tttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgt 318
||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||||
Sbjct: 136 tttaagcatatccactactcccttgcccatgcaagaagcgcacgacaacacaagttatgt 77
Query: 319 tgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggt 378
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 76 tgtcactgctctccctcttgtaggcctcttgcaagagcttctttgcagcttcttctgggt 17
Query: 379 cctgaatggatct 391
| ||||| |||||
Sbjct: 16 catgaatcgatct 4
>gb|AU068448.1|AU068448 AU068448 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30278_6A, mRNA sequence
Length = 233
Score = 151 bits (76), Expect = 9e-034
Identities = 106/116 (91%)
Strand = Plus / Minus
Query: 951 ccatcaacacaatcaatttttgtctcatagaagtcttccatggatgcccttttaccaggg 1010
||||||||| | |||||| ||||||| || |||||||||||||| |||||||||||||||
Sbjct: 233 ccatcaacagagtcaattcttgtctcgtaaaagtcttccatggaagcccttttaccaggg 174
Query: 1011 gagcttgcatagccatagctaaatctaccattctggctgaggccgccgccgctgac 1066
||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 173 gagctcgcatacccatagctaaacttaccattctggctgaggccgccgccgctgac 118
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| |||||||||||||||| | ||||||||||||||| || || || ||
Sbjct: 6291018 gatctctggatcagcaaccacatattgcttcaggagtttgtcaccaaatgctcgagagac 6291077
Query: 548 agcaagtacaccaccaacgcgccatgttcct 578
|||||| |||||||| |||||||||||||||
Sbjct: 6291078 agcaagaacaccacccacgcgccatgttcct 6291108
Score = 75.8 bits (38), Expect = 4e-011
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
||||||||| || ||||| || ||||| ||| ||||| |||| ||||||| | || ||
Sbjct: 6292011 accatcaaagacaccaaacagtccaacggtctctccatcgacaccatcaattctggtgtc 6292070
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
||||||||| |||||||| | ||||| ||||| ||||| ||||| |||||||||||| |
Sbjct: 6292071 atagaagtcctccatggaggatctttttccaggagagctcgcataaccatagctaaattt 6292130
Query: 1037 accatt 1042
||||||
Sbjct: 6292131 accatt 6292136
Score = 52.0 bits (26), Expect = 6e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 579 gcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggc 638
||||||||||||||||| |||||||| || || | ||||| ||| || | |||||||||
Sbjct: 6291228 gcccacatcacaaaaccaccagcatcctctatcctctgcctctcgtctgactgatcaggc 6291287
Query: 639 ttgtgatcctttgaaacagcaatagc 664
||||| || |||| ||||| |||||
Sbjct: 6291288 ttgtggtctcttgacacagctatagc 6291313
>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
PAC clone:P0545E05
Length = 163229
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| |||||||||||||||| | ||||||||||||||| || || || ||
Sbjct: 619 gatctctggatcagcaaccacatattgcttcaggagtttgtcaccaaatgctcgagagac 678
Query: 548 agcaagtacaccaccaacgcgccatgttcct 578
|||||| |||||||| |||||||||||||||
Sbjct: 679 agcaagaacaccacccacgcgccatgttcct 709
Score = 75.8 bits (38), Expect = 4e-011
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
||||||||| || ||||| || ||||| ||| ||||| |||| ||||||| | || ||
Sbjct: 1612 accatcaaagacaccaaacagtccaacggtctctccatcgacaccatcaattctggtgtc 1671
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
||||||||| |||||||| | ||||| ||||| ||||| ||||| |||||||||||| |
Sbjct: 1672 atagaagtcctccatggaggatctttttccaggagagctcgcataaccatagctaaattt 1731
Query: 1037 accatt 1042
||||||
Sbjct: 1732 accatt 1737
Score = 52.0 bits (26), Expect = 6e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 579 gcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggc 638
||||||||||||||||| |||||||| || || | ||||| ||| || | |||||||||
Sbjct: 829 gcccacatcacaaaaccaccagcatcctctatcctctgcctctcgtctgactgatcaggc 888
Query: 639 ttgtgatcctttgaaacagcaatagc 664
||||| || |||| ||||| |||||
Sbjct: 889 ttgtggtctcttgacacagctatagc 914
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0028E05
Length = 157631
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| |||||||||||||||| | ||||||||||||||| || || || ||
Sbjct: 133308 gatctctggatcagcaaccacatattgcttcaggagtttgtcaccaaatgctcgagagac 133367
Query: 548 agcaagtacaccaccaacgcgccatgttcct 578
|||||| |||||||| |||||||||||||||
Sbjct: 133368 agcaagaacaccacccacgcgccatgttcct 133398
Score = 75.8 bits (38), Expect = 4e-011
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
||||||||| || ||||| || ||||| ||| ||||| |||| ||||||| | || ||
Sbjct: 134301 accatcaaagacaccaaacagtccaacggtctctccatcgacaccatcaattctggtgtc 134360
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
||||||||| |||||||| | ||||| ||||| ||||| ||||| |||||||||||| |
Sbjct: 134361 atagaagtcctccatggaggatctttttccaggagagctcgcataaccatagctaaattt 134420
Query: 1037 accatt 1042
||||||
Sbjct: 134421 accatt 134426
Score = 52.0 bits (26), Expect = 6e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 579 gcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggc 638
||||||||||||||||| |||||||| || || | ||||| ||| || | |||||||||
Sbjct: 133518 gcccacatcacaaaaccaccagcatcctctatcctctgcctctcgtctgactgatcaggc 133577
Query: 639 ttgtgatcctttgaaacagcaatagc 664
||||| || |||| ||||| |||||
Sbjct: 133578 ttgtggtctcttgacacagctatagc 133603
>gb|AACV01014855.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014855, whole
genome shotgun sequence
Length = 15248
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| |||||||||||||||| | ||||||||||||||| || || || ||
Sbjct: 5864 gatctctggatcagcaaccacatattgcttcaggagtttgtcaccaaatgctcgagagac 5923
Query: 548 agcaagtacaccaccaacgcgccatgttcct 578
|||||| |||||||| |||||||||||||||
Sbjct: 5924 agcaagaacaccacccacgcgccatgttcct 5954
Score = 75.8 bits (38), Expect = 4e-011
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
||||||||| || ||||| || ||||| ||| ||||| |||| ||||||| | || ||
Sbjct: 6857 accatcaaagacaccaaacagtccaacggtctctccatcgacaccatcaattctggtgtc 6916
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
||||||||| |||||||| | ||||| ||||| ||||| ||||| |||||||||||| |
Sbjct: 6917 atagaagtcctccatggaggatctttttccaggagagctcgcataaccatagctaaattt 6976
Query: 1037 accatt 1042
||||||
Sbjct: 6977 accatt 6982
Score = 52.0 bits (26), Expect = 6e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 579 gcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggc 638
||||||||||||||||| |||||||| || || | ||||| ||| || | |||||||||
Sbjct: 6074 gcccacatcacaaaaccaccagcatcctctatcctctgcctctcgtctgactgatcaggc 6133
Query: 639 ttgtgatcctttgaaacagcaatagc 664
||||| || |||| ||||| |||||
Sbjct: 6134 ttgtggtctcttgacacagctatagc 6159
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| |||||||||||||||| | ||||||||||||||| || || || ||
Sbjct: 10203987 gatctctggatcagcaaccacatattgcttcaggagtttgtcaccaaatgctcgagagac 10204046
Query: 548 agcaagtacaccaccaacgcgccatgttcct 578
|||||| |||||||| |||||||||||||||
Sbjct: 10204047 agcaagaacaccacccacgcgccatgttcct 10204077
Score = 75.8 bits (38), Expect = 4e-011
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
||||||||| || ||||| || ||||| ||| ||||| |||| ||||||| | || ||
Sbjct: 10204980 accatcaaagacaccaaacagtccaacggtctctccatcgacaccatcaattctggtgtc 10205039
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
||||||||| |||||||| | ||||| ||||| ||||| ||||| |||||||||||| |
Sbjct: 10205040 atagaagtcctccatggaggatctttttccaggagagctcgcataaccatagctaaattt 10205099
Query: 1037 accatt 1042
||||||
Sbjct: 10205100 accatt 10205105
Score = 52.0 bits (26), Expect = 6e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 579 gcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggc 638
||||||||||||||||| |||||||| || || | ||||| ||| || | |||||||||
Sbjct: 10204197 gcccacatcacaaaaccaccagcatcctctatcctctgcctctcgtctgactgatcaggc 10204256
Query: 639 ttgtgatcctttgaaacagcaatagc 664
||||| || |||| ||||| |||||
Sbjct: 10204257 ttgtggtctcttgacacagctatagc 10204282
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| |||||||||||||||| | ||||||||||||||| || || || ||
Sbjct: 27902724 gatctctggatcagcaaccacatattgcttcaggagtttgtcaccaaatgctcgagagac 27902783
Query: 548 agcaagtacaccaccaacgcgccatgttcct 578
|||||| |||||||| |||||||||||||||
Sbjct: 27902784 agcaagaacaccacccacgcgccatgttcct 27902814
Score = 75.8 bits (38), Expect = 4e-011
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
||||||||| || ||||| || ||||| ||| ||||| |||| ||||||| | || ||
Sbjct: 27903717 accatcaaagacaccaaacagtccaacggtctctccatcgacaccatcaattctggtgtc 27903776
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
||||||||| |||||||| | ||||| ||||| ||||| ||||| |||||||||||| |
Sbjct: 27903777 atagaagtcctccatggaggatctttttccaggagagctcgcataaccatagctaaattt 27903836
Query: 1037 accatt 1042
||||||
Sbjct: 27903837 accatt 27903842
Score = 52.0 bits (26), Expect = 6e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 579 gcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggc 638
||||||||||||||||| |||||||| || || | ||||| ||| || | |||||||||
Sbjct: 27902934 gcccacatcacaaaaccaccagcatcctctatcctctgcctctcgtctgactgatcaggc 27902993
Query: 639 ttgtgatcctttgaaacagcaatagc 664
||||| || |||| ||||| |||||
Sbjct: 27902994 ttgtggtctcttgacacagctatagc 27903019
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| |||||||||||||||| | ||||||||||||||| || || || ||
Sbjct: 28825533 gatctctggatcagcaaccacatattgcttcaggagtttgtcaccaaatgctcgagagac 28825592
Query: 548 agcaagtacaccaccaacgcgccatgttcct 578
|||||| |||||||| |||||||||||||||
Sbjct: 28825593 agcaagaacaccacccacgcgccatgttcct 28825623
Score = 75.8 bits (38), Expect = 4e-011
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
||||||||| || ||||| || ||||| ||| ||||| |||| ||||||| | || ||
Sbjct: 28826526 accatcaaagacaccaaacagtccaacggtctctccatcgacaccatcaattctggtgtc 28826585
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
||||||||| |||||||| | ||||| ||||| ||||| ||||| |||||||||||| |
Sbjct: 28826586 atagaagtcctccatggaggatctttttccaggagagctcgcataaccatagctaaattt 28826645
Query: 1037 accatt 1042
||||||
Sbjct: 28826646 accatt 28826651
Score = 52.0 bits (26), Expect = 6e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 579 gcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggc 638
||||||||||||||||| |||||||| || || | ||||| ||| || | |||||||||
Sbjct: 28825743 gcccacatcacaaaaccaccagcatcctctatcctctgcctctcgtctgactgatcaggc 28825802
Query: 639 ttgtgatcctttgaaacagcaatagc 664
||||| || |||| ||||| |||||
Sbjct: 28825803 ttgtggtctcttgacacagctatagc 28825828
>gb|CF309159.1|CF309159 ABF--03-D22.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group) cDNA
clone ABF--03-D22, mRNA sequence
Length = 516
Score = 91.7 bits (46), Expect = 7e-016
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 909 ccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatt 968
||||||||||||||||| || ||||| || ||||| ||| ||||| |||| |||||||
Sbjct: 364 ccaccatgaccatcaaagacaccaaacagtccaacggtctctccatcgacaccatcaatt 305
Query: 969 tttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatag 1028
| || ||||||||||| |||||||| | ||||| ||||| ||||| ||||| ||||||
Sbjct: 304 ctggtgtcatagaagtcctccatggaggatctttttccaggagagctcgcataaccatag 245
Query: 1029 ctaaatctaccatt 1042
|||||| |||||||
Sbjct: 244 ctaaatttaccatt 231
>gb|CF311009.1|CF311009 ABF--06-B01.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group) cDNA
clone ABF--06-B01, mRNA sequence
Length = 603
Score = 91.7 bits (46), Expect = 7e-016
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 909 ccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatt 968
||||||||||||||||| || ||||| || ||||| ||| ||||| |||| |||||||
Sbjct: 368 ccaccatgaccatcaaagacaccaaacagtccaacggtctctccatcgacaccatcaatt 309
Query: 969 tttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatag 1028
| || ||||||||||| |||||||| | ||||| ||||| ||||| ||||| ||||||
Sbjct: 308 ctggtgtcatagaagtcctccatggaggatctttttccaggagagctcgcataaccatag 249
Query: 1029 ctaaatctaccatt 1042
|||||| |||||||
Sbjct: 248 ctaaatttaccatt 235
>gb|C93614.1|C93614 C93614 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0254_1A, mRNA sequence
Length = 338
Score = 79.8 bits (40), Expect = 3e-012
Identities = 110/134 (82%)
Strand = Plus / Minus
Query: 909 ccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatt 968
||||||||||||| ||| || ||||| || ||||| ||| ||||| |||| |||||||
Sbjct: 285 ccaccatgaccattaaagacaccaaacagtccaacggtctctccatcgacaccatcaatt 226
Query: 969 tttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatag 1028
| || ||||||||||| |||||||| | |||| ||||| ||||| ||||| ||||||
Sbjct: 225 ctggtgtcatagaagtcctccatggaggatntttttccaggagagctngcataaccatag 166
Query: 1029 ctaaatctaccatt 1042
|||||| |||||||
Sbjct: 165 ctaaatttaccatt 152
>gb|CZ557046.1|CZ557046 M0033010 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0033010, DNA sequence
Length = 439
Score = 75.8 bits (38), Expect = 4e-011
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 917 accatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtctc 976
||||||||| || ||||| || ||||| ||| ||||| |||| ||||||| | || ||
Sbjct: 107 accatcaaagacaccaaacagtccaacggtctctccatcgacaccatcaattctggtgtc 166
Query: 977 atagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatct 1036
||||||||| |||||||| | ||||| ||||| ||||| ||||| |||||||||||| |
Sbjct: 167 atagaagtcctccatggaggatctttttccaggagagctcgcataaccatagctaaattt 226
Query: 1037 accatt 1042
||||||
Sbjct: 227 accatt 232
>gb|CB644795.1|CB644795 OSJNEb06C15.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06C15 5', mRNA sequence
Length = 770
Score = 73.8 bits (37), Expect = 2e-010
Identities = 166/209 (79%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||||| |||| || |||||||| || ||||| || |||||||| || |||||
Sbjct: 761 acagcttccttgttacttacaacatcccaaagtccatcgctagcaaggatgaggaactca 702
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | ||| |||| |||||| |||||| ||||| |||| ||||| ||||| ||
Sbjct: 701 agggagctatcgacaatctcctccttgatctctggatcagcaactacatactgcttcaat 642
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
|| || |||||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 641 agcttatcaccaaatgctcgagaaacagcaagaacaccaccaacacgccacgtcccagcc 582
Query: 582 cacatcacaaaacctccagcatcttcaat 610
|||||||| || || ||||| || |||||
Sbjct: 581 cacatcacgaagcccccagcgtcctcaat 553
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 835 tatcactgatgaactttggatg 856
||||||||||||||||||||||
Sbjct: 325 tatcactgatgaactttggatg 304
>gb|CB644796.1|CB644796 OSJNEb06C15.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06C15 3', mRNA sequence
Length = 832
Score = 73.8 bits (37), Expect = 2e-010
Identities = 166/209 (79%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||||| |||| || |||||||| || ||||| || |||||||| || |||||
Sbjct: 607 acagcttccttgttacttacaacatcccaaagtccatcgctagcaaggatgaggaactca 666
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | ||| |||| |||||| |||||| ||||| |||| ||||| ||||| ||
Sbjct: 667 agggagctatcgacaatctcctccttgatctctggatcagcaactacatactgcttcaat 726
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
|| || |||||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 727 agcttatcaccaaatgctcgagaaacagcaagaacaccaccaacacgccacgtcccagcc 786
Query: 582 cacatcacaaaacctccagcatcttcaat 610
|||||||| || || ||||| || |||||
Sbjct: 787 cacatcacgaagcccccagcgtcctcaat 815
>gb|CB645136.1|CB645136 OSJNEb06K12.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06K12 5', mRNA sequence
Length = 770
Score = 73.8 bits (37), Expect = 2e-010
Identities = 166/209 (79%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||||| |||| || |||||||| || ||||| || |||||||| || |||||
Sbjct: 761 acagcttccttgttacttacaacatcccaaagtccatcgctagcaaggatgaggaactca 702
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | ||| |||| |||||| |||||| ||||| |||| ||||| ||||| ||
Sbjct: 701 agggagctatcgacaatctcctccttgatctctggatcagcaactacatactgcttcaat 642
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
|| || |||||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 641 agcttatcaccaaatgctcgagaaacagcaagaacaccaccaacacgccacgtcccagcc 582
Query: 582 cacatcacaaaacctccagcatcttcaat 610
|||||||| || || ||||| || |||||
Sbjct: 581 cacatcacgaagcccccagcgtcctcaat 553
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 835 tatcactgatgaactttggatg 856
||||||||||||||||||||||
Sbjct: 325 tatcactgatgaactttggatg 304
>gb|CB658323.1|CB658323 OSJNEc14E14.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14E14 3', mRNA sequence
Length = 855
Score = 73.8 bits (37), Expect = 2e-010
Identities = 166/209 (79%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||||| |||| || |||||||| || ||||| || |||||||| || |||||
Sbjct: 588 acagcttccttgttacttacaacatcccaaagtccatcgctagcaaggatgaggaactca 647
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | ||| |||| |||||| |||||| ||||| |||| ||||| ||||| ||
Sbjct: 648 agggagctatcgacaatctcctccttgatctctggatcagcaactacatactgcttcaat 707
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
|| || |||||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 708 agcttatcaccaaatgctcgagaaacagcaagaacaccaccaacacgccacgtcccagcc 767
Query: 582 cacatcacaaaacctccagcatcttcaat 610
|||||||| || || ||||| || |||||
Sbjct: 768 cacatcacgaagcccccagcgtcctcaat 796
>gb|CB663127.1|CB663127 OSJNEd07L24.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd07L24 3', mRNA sequence
Length = 827
Score = 73.8 bits (37), Expect = 2e-010
Identities = 166/209 (79%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||||| |||| || |||||||| || ||||| || |||||||| || |||||
Sbjct: 560 acagcttccttgttacttacaacatcccaaagtccatcgctagcaaggatgaggaactca 619
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | ||| |||| |||||| |||||| ||||| |||| ||||| ||||| ||
Sbjct: 620 agggagctatcgacaatctcctccttgatctctggatcagcaactacatactgcttcaat 679
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
|| || |||||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 680 agcttatcaccaaatgctcgagaaacagcaagaacaccaccaacacgccacgtcccagcc 739
Query: 582 cacatcacaaaacctccagcatcttcaat 610
|||||||| || || ||||| || |||||
Sbjct: 740 cacatcacgaagcccccagcgtcctcaat 768
>gb|CB673944.1|CB673944 OSJNEe08L21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08L21 3', mRNA sequence
Length = 839
Score = 73.8 bits (37), Expect = 2e-010
Identities = 166/209 (79%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||||| |||| || |||||||| || ||||| || |||||||| || |||||
Sbjct: 520 acagcttccttgttacttacaacatcccaaagtccatcgctagcaaggatgaggaactca 579
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | ||| |||| |||||| |||||| ||||| |||| ||||| ||||| ||
Sbjct: 580 agggagctatcgacaatctcctccttgatctctggatcagcaactacatactgcttcaat 639
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
|| || |||||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 640 agcttatcaccaaatgctcgagaaacagcaagaacaccaccaacacgccacgtcccagcc 699
Query: 582 cacatcacaaaacctccagcatcttcaat 610
|||||||| || || ||||| || |||||
Sbjct: 700 cacatcacgaagcccccagcgtcctcaat 728
>gb|CB682621.1|CB682621 OSJNEf10C13.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10C13 3', mRNA sequence
Length = 842
Score = 73.8 bits (37), Expect = 2e-010
Identities = 166/209 (79%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||||| |||| || |||||||| || ||||| || |||||||| || |||||
Sbjct: 593 acagcttccttgttacttacaacatcccaaagtccatcgctagcaaggatgaggaactca 652
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | ||| |||| |||||| |||||| ||||| |||| ||||| ||||| ||
Sbjct: 653 agggagctatcgacaatctcctccttgatctctggatcagcaactacatactgcttcaat 712
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
|| || |||||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 713 agcttatcaccaaatgctcgagaaacagcaagaacaccaccaacacgccacgtcccagcc 772
Query: 582 cacatcacaaaacctccagcatcttcaat 610
|||||||| || || ||||| || |||||
Sbjct: 773 cacatcacgaagcccccagcgtcctcaat 801
>gb|CB682796.1|CB682796 OSJNEf10H14.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10H14 3', mRNA sequence
Length = 856
Score = 73.8 bits (37), Expect = 2e-010
Identities = 166/209 (79%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||||| |||| || |||||||| || ||||| || |||||||| || |||||
Sbjct: 593 acagcttccttgttacttacaacatcccaaagtccatcgctagcaaggatgaggaactca 652
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | ||| |||| |||||| |||||| ||||| |||| ||||| ||||| ||
Sbjct: 653 agggagctatcgacaatctcctccttgatctctggatcagcaactacatactgcttcaat 712
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
|| || |||||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 713 agcttatcaccaaatgctcgagaaacagcaagaacaccaccaacacgccacgtcccagcc 772
Query: 582 cacatcacaaaacctccagcatcttcaat 610
|||||||| || || ||||| || |||||
Sbjct: 773 cacatcacgaagcccccagcgtcctcaat 801
>gb|CB684284.1|CB684284 OSJNEf13K04.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf13K04 3', mRNA sequence
Length = 792
Score = 73.8 bits (37), Expect = 2e-010
Identities = 166/209 (79%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||||| |||| || |||||||| || ||||| || |||||||| || |||||
Sbjct: 550 acagcttccttgttacttacaacatcccaaagtccatcgctagcaaggatgaggaactca 609
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | ||| |||| |||||| |||||| ||||| |||| ||||| ||||| ||
Sbjct: 610 agggagctatcgacaatctcctccttgatctctggatcagcaactacatactgcttcaat 669
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
|| || |||||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 670 agcttatcaccaaatgctcgagaaacagcaagaacaccaccaacacgccacgtcccagcc 729
Query: 582 cacatcacaaaacctccagcatcttcaat 610
|||||||| || || ||||| || |||||
Sbjct: 730 cacatcacgaagcccccagcgtcctcaat 758
>gb|CF309864.1|CF309864 ABF--04-D19.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--04-D19, mRNA sequence
Length = 562
Score = 73.8 bits (37), Expect = 2e-010
Identities = 166/209 (79%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||||| |||| || |||||||| || ||||| || |||||||| || |||||
Sbjct: 340 acagcttccttgttacttacaacatcccaaagtccatcgctagcaaggatgaggaactca 281
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | ||| |||| |||||| |||||| ||||| |||| ||||| ||||| ||
Sbjct: 280 agggagctatcgacaatctcctccttgatctctggatcagcaactacatactgcttcaat 221
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
|| || |||||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 220 agcttatcaccaaatgctcgagaaacagcaagaacaccaccaacacgccacgtcccagcc 161
Query: 582 cacatcacaaaacctccagcatcttcaat 610
|||||||| || || ||||| || |||||
Sbjct: 160 cacatcacgaagcccccagcgtcctcaat 132
>dbj|AK066016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047F22, full
insert sequence
Length = 1549
Score = 73.8 bits (37), Expect = 2e-010
Identities = 166/209 (79%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||||| |||| || |||||||| || ||||| || |||||||| || |||||
Sbjct: 936 acagcttccttgttacttacaacatcccaaagtccatcgctagcaaggatgaggaactca 877
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | ||| |||| |||||| |||||| ||||| |||| ||||| ||||| ||
Sbjct: 876 agggagctatcgacaatctcctccttgatctctggatcagcaactacatactgcttcaat 817
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
|| || |||||||| || || ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 816 agcttatcaccaaatgctcgagaaacagcaagaacaccaccaacacgccacgtcccagcc 757
Query: 582 cacatcacaaaacctccagcatcttcaat 610
|||||||| || || ||||| || |||||
Sbjct: 756 cacatcacgaagcccccagcgtcctcaat 728
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 835 tatcactgatgaactttggatg 856
||||||||||||||||||||||
Sbjct: 500 tatcactgatgaactttggatg 479
>gb|D39634.1|D39634 RICS1165A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 313
Score = 69.9 bits (35), Expect = 3e-009
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| |||| ||||| ||||| || || || |||||||| || || |||||
Sbjct: 178 gatctctggatcagcaactacatactgcttcaatagcttatcaccaaatgctcgagaaac 119
Query: 548 agcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttc 607
|||||| ||||||||||| ||||| || || ||||||||||| || || ||||| || ||
Sbjct: 118 agcaagaacaccaccaacacgccacgtcccagcccacatcacgaagcccccagcgtcctc 59
Query: 608 aat 610
|||
Sbjct: 58 aat 56
>gb|AU068643.1|AU068643 AU068643 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30624_8A, mRNA sequence
Length = 642
Score = 69.9 bits (35), Expect = 3e-009
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| |||| ||||| ||||| || || || |||||||| || || |||||
Sbjct: 586 gatctctggatcagcaactacatactgcttcaatagcttatcaccaaatgctcgagaaac 527
Query: 548 agcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttc 607
|||||| ||||||||||| ||||| || || ||||||||||| || || ||||| || ||
Sbjct: 526 agcaagaacaccaccaacacgccacgtcccagcccacatcacgaagcccccagcgtcctc 467
Query: 608 aat 610
|||
Sbjct: 466 aat 464
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 835 tatcactgatgaactttggatg 856
||||||||||||||||||||||
Sbjct: 236 tatcactgatgaactttggatg 215
>gb|CB663126.1|CB663126 OSJNEd07L24.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd07L24 5', mRNA sequence
Length = 840
Score = 69.9 bits (35), Expect = 3e-009
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| |||| ||||| ||||| || || || |||||||| || || |||||
Sbjct: 819 gatctctggatcagcaactacatactgcttcaatagcttatcaccaaatgctcgagaaac 760
Query: 548 agcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttc 607
|||||| ||||||||||| ||||| || || ||||||||||| || || ||||| || ||
Sbjct: 759 agcaagaacaccaccaacacgccacgtcccagcccacatcacgaagcccccagcgtcctc 700
Query: 608 aat 610
|||
Sbjct: 699 aat 697
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 835 tatcactgatgaactttggatg 856
||||||||||||||||||||||
Sbjct: 469 tatcactgatgaactttggatg 448
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,007,472
Number of Sequences: 438736
Number of extensions: 2007472
Number of successful extensions: 8867
Number of sequences better than 0.5: 90
Number of HSP's better than 0.5 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8328
Number of HSP's gapped (non-prelim): 513
length of query: 1074
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1053
effective length of database: 2,791,206,460
effective search space: 2939140402380
effective search space used: 2939140402380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)