BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306429.2.4
(806 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (j... 367 6e-099
gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (j... 367 6e-099
gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (j... 367 6e-099
gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (j... 367 6e-099
gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (j... 367 6e-099
gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (j... 367 6e-099
gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, co... 367 6e-099
dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA... 367 6e-099
dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA... 367 6e-099
dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA... 367 6e-099
ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA 367 6e-099
dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA... 359 2e-096
gb|CB668192.1|CB668192 OSJNEd15O19.r OSJNEd Oryza sativa (j... 351 4e-094
gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (j... 339 1e-090
gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering s... 331 3e-088
gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (jap... 297 5e-078
gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (j... 293 7e-077
gb|C25358.1|C25358 C25358 Rice shoot Oryza sativa (japonica... 287 5e-075
gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (ja... 287 5e-075
gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA ... 287 5e-075
gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (j... 285 2e-074
gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 ... 281 3e-073
gb|AACV01007733.1| Oryza sativa (japonica cultivar-group) c... 281 3e-073
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 281 3e-073
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 281 3e-073
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 281 3e-073
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 281 3e-073
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 281 3e-073
gb|AC091670.7| Oryza sativa (japonica cultivar-group) chrom... 281 3e-073
gb|CB648778.1|CB648778 OSJNEb12F12.r OSJNEb Oryza sativa (j... 270 1e-069
gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda ph... 254 6e-065
gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sati... 250 1e-063
gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germinati... 242 2e-061
gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germinati... 242 2e-061
gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germinati... 242 2e-061
gb|AU222984.1|AU222984 AU222984 Rice shoot Oryza sativa (ja... 238 4e-060
gb|CB643858.1|CB643858 OSJNEb04M14.r OSJNEb Oryza sativa (j... 234 6e-059
dbj|AG214794.1| Oryza sativa (japonica cultivar-group) DNA,... 230 9e-058
gb|AU092227.1|AU092227 AU092227 Rice callus Oryza sativa (j... 228 4e-057
gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3... 220 9e-055
gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3... 212 2e-052
gb|AU066086.2|AU066086 AU066086 Rice shoot Oryza sativa (ja... 206 1e-050
gb|CV731446.1|CV731446 FLO--05-H19.g1 Rice flower lambda ph... 206 1e-050
gb|AU033196.1|AU033196 AU033196 Rice shoot Oryza sativa (ja... 176 1e-041
gb|AU029514.1|AU029514 AU029514 Rice panicle shorter than 3... 165 5e-038
gb|C72237.1|C72237 C72237 Rice panicle at flowering stage O... 137 1e-029
gb|AU174381.1|AU174381 AU174381 Rice shoot Oryza sativa (ja... 133 2e-028
gb|AU097647.1|AU097647 AU097647 Rice shoot Oryza sativa (ja... 129 3e-027
gb|CF312197.1|CF312197 ABF--07-M20.b1 ABF3-overexpressing t... 119 2e-024
gb|AU071104.1|AU071104 AU071104 Rice cDNA from young root O... 101 6e-019
gb|AU070800.2|AU070800 AU070800 Rice cDNA from young root O... 101 6e-019
gb|AU031958.1|AU031958 AU031958 Rice root Oryza sativa (jap... 96 4e-017
gb|CF312198.1|CF312198 ABF--07-M20.g1 ABF3-overexpressing t... 88 9e-015
gb|D39779.1|D39779 RICS1369A Rice shoot Oryza sativa (japon... 84 1e-013
gb|C97305.1|C97305 C97305 Rice callus Oryza sativa (japonic... 80 2e-012
gb|AU181125.1|AU181125 AU181125 Rice shoot Oryza sativa (ja... 78 8e-012
gb|CA998259.1|CA998259 S234E_C10 Rice cold stress germinati... 70 2e-009
gb|CA998261.1|CA998261 S234E_C12 Rice cold stress germinati... 70 2e-009
gb|CF304479.1|CF304479 ABF1--05-B14.g1 ABF3-overexpressing ... 70 2e-009
dbj|AK059517.1| Oryza sativa (japonica cultivar-group) cDNA... 70 2e-009
dbj|AK105850.1| Oryza sativa (japonica cultivar-group) cDNA... 70 2e-009
dbj|AK120790.1| Oryza sativa (japonica cultivar-group) cDNA... 70 2e-009
gb|AACV01007734.1| Oryza sativa (japonica cultivar-group) c... 70 2e-009
ref|XM_469438.1| Oryza sativa (japonica cultivar-group), mRNA 70 2e-009
gb|AU093914.1|AU093914 AU093914 Rice panicle at flowering s... 64 1e-007
gb|CF304361.1|CF304361 ABF1--04-M08.g1 ABF3-overexpressing ... 62 5e-007
gb|D24663.1|D24663 RICR2336A Rice root Oryza sativa (japoni... 58 8e-006
gb|D39740.1|D39740 RICS1322A Rice shoot Oryza sativa (japon... 56 3e-005
gb|AU092735.1|AU092735 AU092735 Rice callus Oryza sativa (j... 56 3e-005
gb|AU161415.1|AU161415 AU161415 Rice callus Oryza sativa (j... 54 1e-004
gb|CF312912.1|CF312912 ABF--08-N15.g1 ABF3-overexpressing t... 52 5e-004
dbj|AK060988.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.029
dbj|AK069177.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.029
gb|AACV01001283.1| Oryza sativa (japonica cultivar-group) c... 46 0.029
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.029
ref|NM_193731.1| Oryza sativa (japonica cultivar-group), p... 46 0.029
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 46 0.029
dbj|AP003435.2| Oryza sativa (japonica cultivar-group) geno... 46 0.029
dbj|AP003217.3| Oryza sativa (japonica cultivar-group) geno... 46 0.029
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.029
dbj|AG214350.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.46
gb|CB647043.1|CB647043 OSJNEb09M19.r OSJNEb Oryza sativa (j... 42 0.46
gb|CB660688.1|CB660688 OSJNEd02K23.r OSJNEd Oryza sativa (j... 42 0.46
gb|CB661845.1|CB661845 OSJNEd05D15.r OSJNEd Oryza sativa (j... 42 0.46
gb|CF276028.1|CF276028 14ETL--01-A08.g1 Rice etiolated leaf... 42 0.46
dbj|AP003821.1| Oryza sativa (japonica cultivar-group) chro... 42 0.46
dbj|AK068499.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.46
gb|AACV01016950.1| Oryza sativa (japonica cultivar-group) c... 42 0.46
dbj|AP005182.5| Oryza sativa (japonica cultivar-group) geno... 42 0.46
dbj|AP005184.5| Oryza sativa (japonica cultivar-group) geno... 42 0.46
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 42 0.46
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.46
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.46
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.46
>gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03L22 3', mRNA sequence
Length = 813
Score = 367 bits (185), Expect = 6e-099
Identities = 365/425 (85%)
Strand = Plus / Minus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 684 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 625
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 624 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 565
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 564 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 505
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 504 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 445
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 444 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 385
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || ||||||
Sbjct: 384 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 325
Query: 414 tacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggac 473
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 324 tacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggac 265
Query: 474 atgct 478
|||||
Sbjct: 264 atgct 260
>gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05K05 3', mRNA sequence
Length = 837
Score = 367 bits (185), Expect = 6e-099
Identities = 365/425 (85%)
Strand = Plus / Minus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 771 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 712
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 711 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 652
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 651 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 592
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 591 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 532
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 531 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 472
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || ||||||
Sbjct: 471 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 412
Query: 414 tacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggac 473
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 411 tacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggac 352
Query: 474 atgct 478
|||||
Sbjct: 351 atgct 347
>gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08N06 3', mRNA sequence
Length = 835
Score = 367 bits (185), Expect = 6e-099
Identities = 365/425 (85%)
Strand = Plus / Minus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 683 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 624
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 623 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 564
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 563 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 504
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 503 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 444
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 443 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 384
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || ||||||
Sbjct: 383 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 324
Query: 414 tacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggac 473
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 323 tacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggac 264
Query: 474 atgct 478
|||||
Sbjct: 263 atgct 259
>gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08O07 3', mRNA sequence
Length = 806
Score = 367 bits (185), Expect = 6e-099
Identities = 365/425 (85%)
Strand = Plus / Minus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 683 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 624
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 623 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 564
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 563 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 504
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 503 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 444
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 443 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 384
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || ||||||
Sbjct: 383 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 324
Query: 414 tacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggac 473
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 323 tacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggac 264
Query: 474 atgct 478
|||||
Sbjct: 263 atgct 259
>gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16B19 3', mRNA sequence
Length = 835
Score = 367 bits (185), Expect = 6e-099
Identities = 365/425 (85%)
Strand = Plus / Minus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 683 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 624
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 623 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 564
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 563 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 504
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 503 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 444
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 443 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 384
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || ||||||
Sbjct: 383 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 324
Query: 414 tacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggac 473
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 323 tacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggac 264
Query: 474 atgct 478
|||||
Sbjct: 263 atgct 259
>gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10E15 3', mRNA sequence
Length = 828
Score = 367 bits (185), Expect = 6e-099
Identities = 365/425 (85%)
Strand = Plus / Minus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 676 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 617
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 616 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 557
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 556 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 497
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 496 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 437
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 436 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 377
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || ||||||
Sbjct: 376 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 317
Query: 414 tacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggac 473
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 316 tacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggac 257
Query: 474 atgct 478
|||||
Sbjct: 256 atgct 252
>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds
Length = 1909
Score = 367 bits (185), Expect = 6e-099
Identities = 365/425 (85%)
Strand = Plus / Plus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 1184 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 1243
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 1244 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 1303
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 1304 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 1363
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 1364 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 1423
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 1424 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 1483
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || ||||||
Sbjct: 1484 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 1543
Query: 414 tacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggac 473
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 1544 tacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggac 1603
Query: 474 atgct 478
|||||
Sbjct: 1604 atgct 1608
>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full
insert sequence
Length = 1302
Score = 367 bits (185), Expect = 6e-099
Identities = 365/425 (85%)
Strand = Plus / Plus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 620 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 679
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 680 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 739
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 740 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 799
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 800 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 859
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 860 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 919
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || ||||||
Sbjct: 920 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 979
Query: 414 tacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggac 473
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 980 tacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggac 1039
Query: 474 atgct 478
|||||
Sbjct: 1040 atgct 1044
>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full
insert sequence
Length = 1894
Score = 367 bits (185), Expect = 6e-099
Identities = 365/425 (85%)
Strand = Plus / Plus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 1179 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 1238
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 1239 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 1298
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 1299 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 1358
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 1359 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 1418
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 1419 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 1478
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || ||||||
Sbjct: 1479 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 1538
Query: 414 tacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggac 473
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 1539 tacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggac 1598
Query: 474 atgct 478
|||||
Sbjct: 1599 atgct 1603
>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full
insert sequence
Length = 1857
Score = 367 bits (185), Expect = 6e-099
Identities = 365/425 (85%)
Strand = Plus / Plus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 1175 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 1234
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 1235 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 1294
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 1295 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 1354
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 1355 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 1414
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 1415 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 1474
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || ||||||
Sbjct: 1475 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 1534
Query: 414 tacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggac 473
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 1535 tacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggac 1594
Query: 474 atgct 478
|||||
Sbjct: 1595 atgct 1599
>ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1849
Score = 367 bits (185), Expect = 6e-099
Identities = 365/425 (85%)
Strand = Plus / Plus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 1173 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 1232
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 1233 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 1292
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 1293 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 1352
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 1353 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 1412
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 1413 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 1472
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || ||||||
Sbjct: 1473 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 1532
Query: 414 tacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggac 473
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 1533 tacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggac 1592
Query: 474 atgct 478
|||||
Sbjct: 1593 atgct 1597
>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full
insert sequence
Length = 1846
Score = 359 bits (181), Expect = 2e-096
Identities = 364/425 (85%)
Strand = Plus / Plus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 1176 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 1235
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || ||| |||||
Sbjct: 1236 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtggactac 1295
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 1296 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 1355
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 1356 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 1415
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 1416 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 1475
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || ||||||
Sbjct: 1476 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 1535
Query: 414 tacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggac 473
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 1536 tacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggac 1595
Query: 474 atgct 478
|||||
Sbjct: 1596 atgct 1600
>gb|CB668192.1|CB668192 OSJNEd15O19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15O19 3', mRNA sequence
Length = 877
Score = 351 bits (177), Expect = 4e-094
Identities = 363/425 (85%)
Strand = Plus / Minus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 781 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 722
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 721 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 662
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 661 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 602
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | || |||||||||
Sbjct: 601 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttttacaggagc 542
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 541 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 482
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || |||||
Sbjct: 481 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtt 422
Query: 414 tacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggac 473
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 421 tacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggac 362
Query: 474 atgct 478
|||||
Sbjct: 361 atgct 357
>gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08C01 3', mRNA sequence
Length = 775
Score = 339 bits (171), Expect = 1e-090
Identities = 330/383 (86%)
Strand = Plus / Minus
Query: 96 ggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacggggatg 155
|||||||| |||||||| ||||| |||| ||| ||||| ||||||| || |||||||
Sbjct: 754 ggcaaaccaattggaccgcaggcaaattttaattggctttacatcgtgccatgggggatg 695
Query: 156 tacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacggag 215
||||| || ||||||||| ||||| ||||||| |||||||| || || |||||| ||
Sbjct: 694 tacggatgtgtgaactacatcaagcagaagtacgggaatccgacagtcgtcataactgaa 635
Query: 216 aacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagg 275
||||||||||| || |||| ||| | | ||| ||||||||| |||||||| ||||||||
Sbjct: 634 aacggaatggatcaacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagg 575
Query: 276 gtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcgaac 335
|| | ||||||||||||||| || |||||||||||||||||| ||| |||| || ||
Sbjct: 574 gttcatttctacaggagctacctcacccagctgaagaaggccatcgacgagggcgccaat 515
Query: 336 gtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcg 395
||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||
Sbjct: 514 gtggctggctacttcgcctggtctctcctggacaacttcgagtggctgtcaggttacacg 455
Query: 396 tccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcg 455
|||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 454 tccaagtttggtatcgtctacgtcgacttcaacacgctcgagcgccaccccaaggcgtcg 395
Query: 456 gcctactggttcagggacatgct 478
|||||||||||||||||||||||
Sbjct: 394 gcctactggttcagggacatgct 372
>gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1350, mRNA sequence
Length = 709
Score = 331 bits (167), Expect = 3e-088
Identities = 324/375 (86%), Gaps = 1/375 (0%)
Strand = Plus / Plus
Query: 105 attggaccacaggcgaattctaagt-ggctctacatcgccccgacggggatgtacgggtg 163
|||||||||||||| |||||||| | |||| ||||||| || |||||||||||| ||
Sbjct: 60 attggaccacaggcaaattctaaattggctttacatcgtgccatgggggatgtacggatg 119
Query: 164 cgtgaactacctcaaggagaagtatgggaatccaacgatctacataacggagaacggaat 223
||||||||| ||||| ||||||| |||||||| || || |||||| || ||||||||
Sbjct: 120 tgtgaactacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaat 179
Query: 224 ggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggtt 283
||| || |||| ||| | | ||| ||||||||| |||||||| |||||||||| | ||
Sbjct: 180 ggatcaacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcattt 239
Query: 284 ctacaggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggctgg 343
||||||||||||| || |||||||||||||||||| ||| |||| || || ||||||||
Sbjct: 240 ctacaggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctgg 299
Query: 344 ctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagtt 403
||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||
Sbjct: 300 ctacttcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtt 359
Query: 404 cggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactg 463
|| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 360 tggtatcgtctacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactg 419
Query: 464 gttcagggacatgct 478
|||||||||||||||
Sbjct: 420 gttcagggacatgct 434
>gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3421, mRNA sequence
Length = 716
Score = 297 bits (150), Expect = 5e-078
Identities = 321/374 (85%), Gaps = 4/374 (1%)
Strand = Plus / Plus
Query: 106 ttggaccacaggcgaattctaagtggctctacatcgccccgacggggat-gtacgggtgc 164
||||||||||||| |||||||| || || ||||||| || | |||||| ||||| ||
Sbjct: 68 ttggaccacaggc-aattctaattgnctttacatcgtccn-atggggattntacggatgt 125
Query: 165 gtgaactacctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatg 224
|||| |||| ||||| ||||||| |||||||| || || |||||| || |||||||||
Sbjct: 126 gtganctacatcaagcagaagtacgggaatccgacagtcgtcataactga-aacggaatg 184
Query: 225 gaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttc 284
|| || |||| ||| | | ||| ||||||||| |||||||| |||||||||| | |||
Sbjct: 185 gatcaacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttc 244
Query: 285 tacaggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggc 344
|||||||||||| || |||||||||||||||||| ||| |||| || || |||||||||
Sbjct: 245 tacaggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggc 304
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
|||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||
Sbjct: 305 tacttcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagttt 364
Query: 405 ggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactgg 464
|| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 365 ggtatcgtctacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactgg 424
Query: 465 ttcagggacatgct 478
||||||||||||||
Sbjct: 425 ttcagggacatgct 438
>gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10A12 5', mRNA sequence
Length = 796
Score = 293 bits (148), Expect = 7e-077
Identities = 322/380 (84%)
Strand = Plus / Plus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 417 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 476
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 477 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 536
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 537 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 596
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 597 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 656
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 657 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 716
Query: 354 tggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtc 413
||||||||||| |||||||||||||||||| |||| ||| |||||||||| || ||||||
Sbjct: 717 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 776
Query: 414 tacgtggacttcaacacgct 433
||||| ||||||||||||||
Sbjct: 777 tacgtcgacttcaacacgct 796
>gb|C25358.1|C25358 C25358 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S6040_1A, mRNA sequence
Length = 383
Score = 287 bits (145), Expect = 5e-075
Identities = 310/367 (84%)
Strand = Plus / Plus
Query: 105 attggaccacaggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgc 164
|||||||||||||| |||||||| ||||| ||||||| || |||||||||||| ||
Sbjct: 5 attggaccacaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgt 64
Query: 165 gtgaactacctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatg 224
||||||||| ||||| ||||||| |||||||| || || |||||| || |||||||||
Sbjct: 65 gtgaactacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatg 124
Query: 225 gaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttc 284
| || |||| ||| | | ||| ||||||||| |||||||| |||||||||| | |||
Sbjct: 125 gntcaacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttc 184
Query: 285 tacaggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggc 344
|||||||||||| || |||||||||||||||||| ||| |||| || || |||||||||
Sbjct: 185 tacaggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggc 244
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
||||||| |||||||||||| |||| ||||||||||||| |||| ||| ||||||||||
Sbjct: 245 tacttcgnctggtctctcctggacancttcgagtggctgtcaggttacacgtccaagttt 304
Query: 405 ggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactgg 464
|| ||||||||||| ||||||| |||| |||| || ||||| |||||||||| |||||||
Sbjct: 305 ggtatcgtctacgtcgacttcancacgttcgagcgncaccccaaggcgtcggnctactgg 364
Query: 465 ttcaggg 471
|||||||
Sbjct: 365 ttcaggg 371
>gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S3977_2Z, mRNA sequence
Length = 493
Score = 287 bits (145), Expect = 5e-075
Identities = 241/273 (88%)
Strand = Plus / Plus
Query: 206 cataacggagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcga 265
|||||| || ||||||||||| || |||| ||| | | ||| ||||||||| |||||||
Sbjct: 41 cataactgaaaacggaatggatcaacctgcgaacctcagccgcgaccagtacttgcgcga 100
Query: 266 cgccacgagggtgcggttctacaggagctacatcggccagctgaagaaggccatagacca 325
| |||||||||| | ||||||||||||||| || |||||||||||||||||| ||| |
Sbjct: 101 caccacgagggttcatttctacaggagctacctcacccagctgaagaaggccatcgacga 160
Query: 326 gggagcgaacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggc 385
||| || || ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 161 gggcgccaatgtggctggctacttcgcctggtctctcctggacaacttcgagtggctgtc 220
Query: 386 agggtactcgtccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccaccc 445
||| ||| |||||||||| || ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 221 aggttacacgtccaagtttggtatcgtctacgtcgacttcaacacgctcgagcgccaccc 280
Query: 446 gaaggcgtcggcctactggttcagggacatgct 478
||||||||||||||||||||||||||||||||
Sbjct: 281 caaggcgtcggcctactggttcagggacatgct 313
>gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030043000_PLATE_A11_81_084.ab1 similar to
beta-glucosidase (EC 3.2.1.21), chloroplast - rice, mRNA
sequence
Length = 600
Score = 287 bits (145), Expect = 5e-075
Identities = 241/273 (88%)
Strand = Plus / Plus
Query: 206 cataacggagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcga 265
|||||| || ||||||||||| || |||| ||| | | ||| ||||||||| |||||||
Sbjct: 25 cataactgaaaacggaatggatcaacctgcgaacctcagccgcgaccagtacttgcgcga 84
Query: 266 cgccacgagggtgcggttctacaggagctacatcggccagctgaagaaggccatagacca 325
| |||||||||| | ||||||||||||||| || |||||||||||||||||| ||| |
Sbjct: 85 caccacgagggttcatttctacaggagctacctcacccagctgaagaaggccatcgacga 144
Query: 326 gggagcgaacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggc 385
||| || || ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 145 gggcgccaatgtggctggctacttcgcctggtctctcctggacaacttcgagtggctgtc 204
Query: 386 agggtactcgtccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccaccc 445
||| ||| |||||||||| || ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 205 aggttacacgtccaagtttggtatcgtctacgtcgacttcaacacgctcgagcgccaccc 264
Query: 446 gaaggcgtcggcctactggttcagggacatgct 478
||||||||||||||||||||||||||||||||
Sbjct: 265 caaggcgtcggcctactggttcagggacatgct 297
>gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11496, mRNA sequence
Length = 705
Score = 285 bits (144), Expect = 2e-074
Identities = 233/263 (88%)
Strand = Plus / Plus
Query: 216 aacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagg 275
||||||||||| || |||| ||| | | ||| ||||||||| |||||||| ||||||||
Sbjct: 64 aacggaatggatcaacctgcgaacntcagccgcgaccagtacttgcgcgacaccacgagg 123
Query: 276 gtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcgaac 335
|| | ||||||||||||||| || |||||||||||||||||| ||| |||| || ||
Sbjct: 124 gttcatttctacaggagctacctcacccagctgaagaaggccatcgacgagggcgccaat 183
Query: 336 gtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcg 395
||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||
Sbjct: 184 gtggctggctacttcgcctggtctctcctggacaacttcgagtggctgtcaggttacacg 243
Query: 396 tccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcg 455
|||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 244 tccaagtttggtatcgtctacgtcgacttcaacacgctcgagcgccaccccaaggcgtcg 303
Query: 456 gcctactggttcagggacatgct 478
|||||||||||||||||||||||
Sbjct: 304 gcctactggttcagggacatgct 326
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
sequence
Length = 133889
Score = 281 bits (142), Expect = 3e-073
Identities = 208/230 (90%)
Strand = Plus / Plus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctg 308
||||||||| |||||||| |||||||||| | ||||||||||||||| || |||||||
Sbjct: 79064 gaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctg 79123
Query: 309 aagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgac 368
||||||||||| ||| |||| || || ||||||||||||||||||||||||||||| |||
Sbjct: 79124 aagaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggac 79183
Query: 369 aacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaac 428
||||||||||||||| |||| ||| |||||||||| || ||||||||||| |||||||||
Sbjct: 79184 aacttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaac 79243
Query: 429 acgctcgaacgccacccgaaggcgtcggcctactggttcagggacatgct 478
|||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 79244 acgctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 79293
Score = 69.9 bits (35), Expect = 2e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
|||||||| |||||||| ||||| ||||||||||||||| |||| ||| | || ||||||
Sbjct: 70594 tacttcgcatggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagttc 70653
Query: 405 ggcatcgtcta 415
||||| |||||
Sbjct: 70654 ggcattgtcta 70664
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 113 acaggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaacta 172
|||||| |||||||| ||||| ||||||| || |||||||||||| || ||||||||
Sbjct: 78816 acaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaacta 78875
Query: 173 cctcaaggagaagtatgggaatcc 196
| ||||| ||||||| ||||||||
Sbjct: 78876 catcaagcagaagtacgggaatcc 78899
>gb|AACV01007733.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007733, whole
genome shotgun sequence
Length = 4355
Score = 281 bits (142), Expect = 3e-073
Identities = 208/230 (90%)
Strand = Plus / Minus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctg 308
||||||||| |||||||| |||||||||| | ||||||||||||||| || |||||||
Sbjct: 4110 gaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctg 4051
Query: 309 aagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgac 368
||||||||||| ||| |||| || || ||||||||||||||||||||||||||||| |||
Sbjct: 4050 aagaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggac 3991
Query: 369 aacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaac 428
||||||||||||||| |||| ||| |||||||||| || ||||||||||| |||||||||
Sbjct: 3990 aacttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaac 3931
Query: 429 acgctcgaacgccacccgaaggcgtcggcctactggttcagggacatgct 478
|||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3930 acgctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 3881
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 120 aattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactacctcaag 179
|||||||||||||| ||||||| || |||||||||||| || ||||||||| |||||
Sbjct: 4351 aattctaagtggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaag 4292
Query: 180 gagaagtatgggaatcc 196
||||||| ||||||||
Sbjct: 4291 cagaagtacgggaatcc 4275
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 281 bits (142), Expect = 3e-073
Identities = 208/230 (90%)
Strand = Plus / Minus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctg 308
||||||||| |||||||| |||||||||| | ||||||||||||||| || |||||||
Sbjct: 1251227 gaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctg 1251168
Query: 309 aagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgac 368
||||||||||| ||| |||| || || ||||||||||||||||||||||||||||| |||
Sbjct: 1251167 aagaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggac 1251108
Query: 369 aacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaac 428
||||||||||||||| |||| ||| |||||||||| || ||||||||||| |||||||||
Sbjct: 1251107 aacttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaac 1251048
Query: 429 acgctcgaacgccacccgaaggcgtcggcctactggttcagggacatgct 478
|||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1251047 acgctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 1250998
Score = 69.9 bits (35), Expect = 2e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
|||||||| |||||||| ||||| ||||||||||||||| |||| ||| | || ||||||
Sbjct: 1259697 tacttcgcatggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagttc 1259638
Query: 405 ggcatcgtcta 415
||||| |||||
Sbjct: 1259637 ggcattgtcta 1259627
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 113 acaggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaacta 172
|||||| |||||||| ||||| ||||||| || |||||||||||| || ||||||||
Sbjct: 1251475 acaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaacta 1251416
Query: 173 cctcaaggagaagtatgggaatcc 196
| ||||| ||||||| ||||||||
Sbjct: 1251415 catcaagcagaagtacgggaatcc 1251392
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 281 bits (142), Expect = 3e-073
Identities = 208/230 (90%)
Strand = Plus / Minus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctg 308
||||||||| |||||||| |||||||||| | ||||||||||||||| || |||||||
Sbjct: 1728334 gaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctg 1728275
Query: 309 aagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgac 368
||||||||||| ||| |||| || || ||||||||||||||||||||||||||||| |||
Sbjct: 1728274 aagaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggac 1728215
Query: 369 aacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaac 428
||||||||||||||| |||| ||| |||||||||| || ||||||||||| |||||||||
Sbjct: 1728214 aacttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaac 1728155
Query: 429 acgctcgaacgccacccgaaggcgtcggcctactggttcagggacatgct 478
|||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1728154 acgctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 1728105
Score = 69.9 bits (35), Expect = 2e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
|||||||| |||||||| ||||| ||||||||||||||| |||| ||| | || ||||||
Sbjct: 1736623 tacttcgcatggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagttc 1736564
Query: 405 ggcatcgtcta 415
||||| |||||
Sbjct: 1736563 ggcattgtcta 1736553
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 120 aattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactacctcaag 179
|||||||||||||| ||||||| || |||||||||||| || ||||||||| |||||
Sbjct: 1728575 aattctaagtggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaag 1728516
Query: 180 gagaagtatgggaatcc 196
||||||| ||||||||
Sbjct: 1728515 cagaagtacgggaatcc 1728499
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 281 bits (142), Expect = 3e-073
Identities = 208/230 (90%)
Strand = Plus / Minus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctg 308
||||||||| |||||||| |||||||||| | ||||||||||||||| || |||||||
Sbjct: 28994497 gaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctg 28994438
Query: 309 aagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgac 368
||||||||||| ||| |||| || || ||||||||||||||||||||||||||||| |||
Sbjct: 28994437 aagaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggac 28994378
Query: 369 aacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaac 428
||||||||||||||| |||| ||| |||||||||| || ||||||||||| |||||||||
Sbjct: 28994377 aacttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaac 28994318
Query: 429 acgctcgaacgccacccgaaggcgtcggcctactggttcagggacatgct 478
|||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 28994317 acgctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 28994268
Score = 69.9 bits (35), Expect = 2e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
|||||||| |||||||| ||||| ||||||||||||||| |||| ||| | || ||||||
Sbjct: 29002786 tacttcgcatggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagttc 29002727
Query: 405 ggcatcgtcta 415
||||| |||||
Sbjct: 29002726 ggcattgtcta 29002716
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 120 aattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactacctcaag 179
|||||||||||||| ||||||| || |||||||||||| || ||||||||| |||||
Sbjct: 28994738 aattctaagtggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaag 28994679
Query: 180 gagaagtatgggaatcc 196
||||||| ||||||||
Sbjct: 28994678 cagaagtacgggaatcc 28994662
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 281 bits (142), Expect = 3e-073
Identities = 208/230 (90%)
Strand = Plus / Minus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctg 308
||||||||| |||||||| |||||||||| | ||||||||||||||| || |||||||
Sbjct: 28037286 gaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctg 28037227
Query: 309 aagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgac 368
||||||||||| ||| |||| || || ||||||||||||||||||||||||||||| |||
Sbjct: 28037226 aagaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggac 28037167
Query: 369 aacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaac 428
||||||||||||||| |||| ||| |||||||||| || ||||||||||| |||||||||
Sbjct: 28037166 aacttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaac 28037107
Query: 429 acgctcgaacgccacccgaaggcgtcggcctactggttcagggacatgct 478
|||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 28037106 acgctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 28037057
Score = 69.9 bits (35), Expect = 2e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
|||||||| |||||||| ||||| ||||||||||||||| |||| ||| | || ||||||
Sbjct: 28045756 tacttcgcatggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagttc 28045697
Query: 405 ggcatcgtcta 415
||||| |||||
Sbjct: 28045696 ggcattgtcta 28045686
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 113 acaggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaacta 172
|||||| |||||||| ||||| ||||||| || |||||||||||| || ||||||||
Sbjct: 28037534 acaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaacta 28037475
Query: 173 cctcaaggagaagtatgggaatcc 196
| ||||| ||||||| ||||||||
Sbjct: 28037474 catcaagcagaagtacgggaatcc 28037451
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 281 bits (142), Expect = 3e-073
Identities = 208/230 (90%)
Strand = Plus / Minus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctg 308
||||||||| |||||||| |||||||||| | ||||||||||||||| || |||||||
Sbjct: 27945962 gaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctg 27945903
Query: 309 aagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgac 368
||||||||||| ||| |||| || || ||||||||||||||||||||||||||||| |||
Sbjct: 27945902 aagaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggac 27945843
Query: 369 aacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaac 428
||||||||||||||| |||| ||| |||||||||| || ||||||||||| |||||||||
Sbjct: 27945842 aacttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaac 27945783
Query: 429 acgctcgaacgccacccgaaggcgtcggcctactggttcagggacatgct 478
|||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 27945782 acgctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 27945733
Score = 69.9 bits (35), Expect = 2e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
|||||||| |||||||| ||||| ||||||||||||||| |||| ||| | || ||||||
Sbjct: 27954432 tacttcgcatggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagttc 27954373
Query: 405 ggcatcgtcta 415
||||| |||||
Sbjct: 27954372 ggcattgtcta 27954362
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 113 acaggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaacta 172
|||||| |||||||| ||||| ||||||| || |||||||||||| || ||||||||
Sbjct: 27946210 acaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaacta 27946151
Query: 173 cctcaaggagaagtatgggaatcc 196
| ||||| ||||||| ||||||||
Sbjct: 27946150 catcaagcagaagtacgggaatcc 27946127
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
map R2847, complete sequence
Length = 100918
Score = 281 bits (142), Expect = 3e-073
Identities = 208/230 (90%)
Strand = Plus / Minus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctg 308
||||||||| |||||||| |||||||||| | ||||||||||||||| || |||||||
Sbjct: 81690 gaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctg 81631
Query: 309 aagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgac 368
||||||||||| ||| |||| || || ||||||||||||||||||||||||||||| |||
Sbjct: 81630 aagaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggac 81571
Query: 369 aacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaac 428
||||||||||||||| |||| ||| |||||||||| || ||||||||||| |||||||||
Sbjct: 81570 aacttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaac 81511
Query: 429 acgctcgaacgccacccgaaggcgtcggcctactggttcagggacatgct 478
|||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 81510 acgctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 81461
Score = 69.9 bits (35), Expect = 2e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
|||||||| |||||||| ||||| ||||||||||||||| |||| ||| | || ||||||
Sbjct: 90160 tacttcgcatggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagttc 90101
Query: 405 ggcatcgtcta 415
||||| |||||
Sbjct: 90100 ggcattgtcta 90090
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 113 acaggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaacta 172
|||||| |||||||| ||||| ||||||| || |||||||||||| || ||||||||
Sbjct: 81938 acaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaacta 81879
Query: 173 cctcaaggagaagtatgggaatcc 196
| ||||| ||||||| ||||||||
Sbjct: 81878 catcaagcagaagtacgggaatcc 81855
>gb|CB648778.1|CB648778 OSJNEb12F12.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb12F12 3', mRNA sequence
Length = 686
Score = 270 bits (136), Expect = 1e-069
Identities = 350/420 (83%), Gaps = 1/420 (0%)
Strand = Plus / Minus
Query: 60 gccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggaccacaggcg 119
||||||||||||||| ||||||||||| || |||||||| ||||||||||||||
Sbjct: 485 gccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggaccacaggca 426
Query: 120 aattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactacctcaag 179
|||| ||| ||||| | ||||| || |||||||||||| || ||||| ||| |||||
Sbjct: 425 aattttaattggcttttcatcgtgccatgggggatgtacggatgtgtgaattacatcaag 366
Query: 180 gagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcctggaaac 239
||||||| |||||||| || || |||||| || ||||||||||| || | || |||
Sbjct: 365 cagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaccttgtgaac 306
Query: 240 ttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatc 299
| | ||| ||||||||| |||||||| |||||||||| | ||||||||||||||| ||
Sbjct: 305 ctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctc 246
Query: 300 ggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc-tggtc 358
|||||||||||||||||| ||| |||| || || |||||||||||||||| | |||||
Sbjct: 245 acccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgacgtggtc 186
Query: 359 tctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgt 418
|||||| |||||||||||||||||| |||| ||| |||||||||| || || || |||||
Sbjct: 185 tctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatggtgtacgt 126
Query: 419 ggacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggacatgct 478
||||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||
Sbjct: 125 cgacttcaacacgctcgagcgccaccccaaggcgtcggcctcatggttcagggccatgct 66
>gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-H19,
mRNA sequence
Length = 423
Score = 254 bits (128), Expect = 6e-065
Identities = 179/196 (91%)
Strand = Plus / Plus
Query: 283 tctacaggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggctg 342
|||||||||||||| || |||||||||||||||||| ||| |||| || || |||||||
Sbjct: 57 tctacaggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctg 116
Query: 343 gctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagt 402
|||||||||||||||||||||| |||||||||||||||||| |||| ||| |||||||||
Sbjct: 117 gctacttcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagt 176
Query: 403 tcggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctact 462
| || ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 177 ttggtatcgtctacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctact 236
Query: 463 ggttcagggacatgct 478
||||||||||||||||
Sbjct: 237 ggttcagggacatgct 252
>gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S12223, mRNA sequence
Length = 372
Score = 250 bits (126), Expect = 1e-063
Identities = 177/194 (91%)
Strand = Plus / Plus
Query: 285 tacaggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggc 344
|||||||||||| || |||||||||||||||||| ||| |||| || || |||||||||
Sbjct: 1 tacaggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggc 60
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
|||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||
Sbjct: 61 tacttcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagttt 120
Query: 405 ggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactgg 464
|| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 121 ggtatcgtctacgtcgacttcaacacgctcgagcgccaccccaaggcgtcggcctactgg 180
Query: 465 ttcagggacatgct 478
||||||||||||||
Sbjct: 181 ttcagggacatgct 194
>gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 667
Score = 242 bits (122), Expect = 2e-061
Identities = 278/330 (84%)
Strand = Plus / Plus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 338 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 397
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 398 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 457
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 458 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 517
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 518 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 577
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 578 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 637
Query: 354 tggtctctcctcgacaacttcgagtggctg 383
||||||||||| ||||||||||||||||||
Sbjct: 638 tggtctctcctggacaacttcgagtggctg 667
>gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 679
Score = 242 bits (122), Expect = 2e-061
Identities = 278/330 (84%)
Strand = Plus / Plus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 339 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 398
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 399 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 458
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 459 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 518
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 519 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 578
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 579 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 638
Query: 354 tggtctctcctcgacaacttcgagtggctg 383
||||||||||| ||||||||||||||||||
Sbjct: 639 tggtctctcctggacaacttcgagtggctg 668
>gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 668
Score = 242 bits (122), Expect = 2e-061
Identities = 278/330 (84%)
Strand = Plus / Plus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 338 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 397
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || |||||||||||| || |||||||||
Sbjct: 398 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 457
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 458 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 517
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 518 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 577
Query: 294 tacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc 353
||| || |||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 578 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 637
Query: 354 tggtctctcctcgacaacttcgagtggctg 383
||||||||||| ||||||||||||||||||
Sbjct: 638 tggtctctcctggacaacttcgagtggctg 667
>gb|AU222984.1|AU222984 AU222984 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2571, mRNA sequence
Length = 467
Score = 238 bits (120), Expect = 4e-060
Identities = 233/273 (85%)
Strand = Plus / Plus
Query: 206 cataacggagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcga 265
|||||| || ||||||||||| || |||| ||| | | ||| ||||||||| |||||||
Sbjct: 13 cataactgaaaacggaatggatcaacctgcgaacctcagccgcgaccagtacttgcgcga 72
Query: 266 cgccacgagggtgcggttctacaggagctacatcggccagctgaagaaggccatagacca 325
| || ||||||| | || |||||||||||| || ||||||||| |||||||| ||| |
Sbjct: 73 cnccncgagggttcatttttacaggagctacctcacccagctgaanaaggccatcgacga 132
Query: 326 gggagcgaacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggc 385
||| || || |||||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct: 133 gggcgccaatgtggctggctacttcgcctggtctntcctggacaacttcgagtggctgtc 192
Query: 386 agggtactcgtccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccaccc 445
||| ||| |||||||||| || || || ||||| ||||||||||||||||| |||| |||
Sbjct: 193 aggttacacgtccaagtttggtatngtttacgtcgacttcaacacgctcgagcgccnccc 252
Query: 446 gaaggcgtcggcctactggttcagggacatgct 478
|||| |||||||||||||||||||||||||||
Sbjct: 253 caaggngtcggcctactggttcagggacatgct 285
>gb|CB643858.1|CB643858 OSJNEb04M14.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04M14 3', mRNA sequence
Length = 410
Score = 234 bits (118), Expect = 6e-059
Identities = 313/378 (82%)
Strand = Plus / Minus
Query: 96 ggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacggggatg 155
|||||||| ||||| |||||||| |||| ||| ||||| ||||||| || |||||||
Sbjct: 378 ggcaaaccaattgggccacaggcaaattttaattggctttacatcgtgccatgggggatg 319
Query: 156 tacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacggag 215
||||| || ||||||||| ||||| ||||||| |||||||| || || |||| | ||
Sbjct: 318 tacggatgtgtgaactacatcaagcagaagtacgggaatccgacagtcgtcatatctgaa 259
Query: 216 aacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagg 275
||||||||||| || |||| ||| | | ||| ||||||||| |||| ||| || |||||
Sbjct: 258 aacggaatggatcaacctgcgaacctcagccgcgaccagtacttgcgggacacctcgagg 199
Query: 276 gtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcgaac 335
|| | || |||||||||||| || |||||||||||||||||| ||| |||| || ||
Sbjct: 198 gttcatttttacaggagctacctcccccagctgaagaaggccatcgacgagggcgccaat 139
Query: 336 gtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcg 395
|||||||||||||||||||||| | |||| |||||||| ||||||||| |||| ||| ||
Sbjct: 138 gtggctggctacttcgcctggtttttcctggacaactttgagtggctgtcaggttacacg 79
Query: 396 tccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcg 455
|||||||| || ||||||| ||| || ||||||||||| || | |||||| |||| ||||
Sbjct: 78 tccaagtttggtatcgtcttcgtagatttcaacacgctggagccccaccccaaggagtcg 19
Query: 456 gcctactggttcagggac 473
||||||||||||||||||
Sbjct: 18 gcctactggttcagggac 1
>dbj|AG214794.1| Oryza sativa (japonica cultivar-group) DNA, clone:T16546T, 3'
flanking sequence of Tos17 insertion in rice strain
NE7008, genomic survey sequence
Length = 272
Score = 230 bits (116), Expect = 9e-058
Identities = 192/220 (87%)
Strand = Plus / Minus
Query: 259 tgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctgaagaaggcca 318
|||||||| |||||||||| | || |||||||||||| || ||||||||| |||||||
Sbjct: 266 tgcgcgacaccacgagggttcatttntacaggagctacctcacccagctgaanaaggcca 207
Query: 319 tagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgacaacttcgagt 378
| ||| |||| || || |||||||| ||||| ||||||||| |||| |||||||||||||
Sbjct: 206 tngacgagggcgccaatgtggctggntacttngcctggtctntcctggacaacttcgagt 147
Query: 379 ggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaacacgctcgaac 438
||||| |||| ||| |||||||||| || || || ||||| ||||||||||||||||| |
Sbjct: 146 ggctgtcaggttacacgtccaagtttggtatngtntacgtcgacttcaacacgctcgagc 87
Query: 439 gccacccgaaggcgtcggcctactggttcagggacatgct 478
||||||| ||||||||||||||||||||||||||||||||
Sbjct: 86 gccaccccaaggcgtcggcctactggttcagggacatgct 47
>gb|AU092227.1|AU092227 AU092227 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11453, mRNA sequence
Length = 623
Score = 228 bits (115), Expect = 4e-057
Identities = 175/194 (90%), Gaps = 1/194 (0%)
Strand = Plus / Plus
Query: 286 acaggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggct 345
||||||||||| || |||||||||||||||||| ||| ||| || || ||||||||||
Sbjct: 109 acaggagctacctcacccagctgaagaaggccatcgacgaggncgccaatgtggctggct 168
Query: 346 acttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcg 405
||||||||||||||||||| |||||||||||||||||| |||| ||| |||||||||| |
Sbjct: 169 acttcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttg 228
Query: 406 gcatcgtctacgtggacttcaacacgctcgaacg-ccacccgaaggcgtcggcctactgg 464
| ||||||||||| ||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct: 229 gtatcgtctacgtcgacttcaacacgctcgagcgcccaccccaaggcgtcggcctactgg 288
Query: 465 ttcagggacatgct 478
||||||||||||||
Sbjct: 289 ttcagggacatgct 302
>gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31058_1Z, mRNA sequence
Length = 394
Score = 220 bits (111), Expect = 9e-055
Identities = 162/178 (91%), Gaps = 1/178 (0%)
Strand = Plus / Plus
Query: 302 ccagctgaagaaggcc-atagaccagggagcgaacgtggctggctacttcgcctggtctc 360
|||||||||||||||| | ||| |||| || || |||||||||||||||||||||||||
Sbjct: 44 ccagctgaagaaggcccntcgacgagggcgccaatgtggctggctacttcgcctggtctc 103
Query: 361 tcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtgg 420
|||| |||||||||||||||||| |||| ||| |||||||||| || ||||||||||| |
Sbjct: 104 tcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcg 163
Query: 421 acttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggacatgct 478
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 164 acttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 221
>gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31217_1Z, mRNA sequence
Length = 356
Score = 212 bits (107), Expect = 2e-052
Identities = 134/143 (93%)
Strand = Plus / Plus
Query: 336 gtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcg 395
||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||
Sbjct: 41 gtggctggctacttcgcctggtctctcctggacaacttcgagtggctgtcaggttacacg 100
Query: 396 tccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcg 455
|||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 101 tccaagtttggtatcgtctacgtcgacttcaacacgctcgagcgccaccccaaggcgtcg 160
Query: 456 gcctactggttcagggacatgct 478
|||||||||||||||||||||||
Sbjct: 161 gcctactggttcagggacatgct 183
>gb|AU066086.2|AU066086 AU066086 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2816_5A, mRNA sequence
Length = 345
Score = 206 bits (104), Expect = 1e-050
Identities = 133/143 (93%)
Strand = Plus / Plus
Query: 336 gtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcg 395
||||||||||||||||||||||||||||| || ||||||||||||||| |||| ||| ||
Sbjct: 22 gtggctggctacttcgcctggtctctcctgganaacttcgagtggctgtcaggttacacg 81
Query: 396 tccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcg 455
|||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 82 tccaagtttggtatcgtctacgtcgacttcaacacgctcgagcgccaccccaaggcgtcg 141
Query: 456 gcctactggttcagggacatgct 478
|||||||||||||||||||||||
Sbjct: 142 gcctactggttcagggacatgct 164
>gb|CV731446.1|CV731446 FLO--05-H19.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-H19,
mRNA sequence
Length = 383
Score = 206 bits (104), Expect = 1e-050
Identities = 170/192 (88%)
Strand = Plus / Minus
Query: 285 tacaggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggc 344
|||||||||||| || |||||||||||||||||| ||| |||| || || ||||||||
Sbjct: 365 tacaggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggg 306
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
||||||||||||||| |||| |||||||||||||||||| |||| ||| ||||||||||
Sbjct: 305 tacttcgcctggtctttcctggacaacttcgagtggctgtcaggttacacgtccaagttt 246
Query: 405 ggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcggcctactgg 464
|| || || ||||| ||||||||||||||||| |||||||| |||| |||||||||||||
Sbjct: 245 ggtattgtttacgtcgacttcaacacgctcgagcgccaccccaaggggtcggcctactgg 186
Query: 465 ttcagggacatg 476
||||||||||||
Sbjct: 185 ttcagggacatg 174
>gb|AU033196.1|AU033196 AU033196 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4984_1Z, mRNA sequence
Length = 437
Score = 176 bits (89), Expect = 1e-041
Identities = 131/143 (91%), Gaps = 2/143 (1%)
Strand = Plus / Plus
Query: 336 gtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcg 395
||||||||||||| ||||||||||| ||| |||||||||||||||||| |||| ||| ||
Sbjct: 6 gtggctggctact-cgcctggtctcncctggacaacttcgagtggctgtcagg-tacacg 63
Query: 396 tccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcg 455
|||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 64 tccaagtttggtatcgtctacgtcgacttcaacacgctcgagcgccaccccaaggcgtcg 123
Query: 456 gcctactggttcagggacatgct 478
|||||||||||||||||| ||||
Sbjct: 124 gcctactggttcagggacntgct 146
>gb|AU029514.1|AU029514 AU029514 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31025_7Z, mRNA sequence
Length = 422
Score = 165 bits (83), Expect = 5e-038
Identities = 131/143 (91%), Gaps = 3/143 (2%)
Strand = Plus / Plus
Query: 336 gtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcg 395
||||||||||||||||||||||||||||| |||||||||||||||||| || | ||| ||
Sbjct: 16 gtggctggctacttcgcctggtctctcctggacaacttcgagtggctgtca-gttacacg 74
Query: 396 tccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcg 455
|||||||| || ||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 75 tccaagtttggtatcgtctacgtcga-ttcaacacgctcgagcgccaccc-caggcgtcg 132
Query: 456 gcctactggttcagggacatgct 478
|||||||||||||||||||||||
Sbjct: 133 gcctactggttcagggacatgct 155
>gb|C72237.1|C72237 C72237 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1267_2A, mRNA sequence
Length = 446
Score = 137 bits (69), Expect = 1e-029
Identities = 153/177 (86%), Gaps = 4/177 (2%)
Strand = Plus / Minus
Query: 306 ctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcc-tggtctc-tcc 363
||||| ||||| || ||| |||| || || |||||||||||||||||| ||||||| ||
Sbjct: 446 ctgaaaaaggcnatcgacaagggcgcaaatgtggctggctacttcgccctggtctccncc 387
Query: 364 tcgacaacttcg-agtggctggcagggtactcgtccaagttcggcatcgtctacgtggac 422
| |||||||||| |||||||| |||||||| |||| || | || ||||||||||| |||
Sbjct: 386 tggacaacttcgnagtggctgtcagggtacacgtcaaaagttggtatcgtctacgtcgac 327
Query: 423 ttcaa-cacgctcgaacgccacccgaaggcgtcggcctactggttcagggacatgct 478
||||| ||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 326 ttcaaacacgctcgancgccaccccaagncgtcggcctactggttcagggacatgct 270
>gb|AU174381.1|AU174381 AU174381 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6040, mRNA sequence
Length = 450
Score = 133 bits (67), Expect = 2e-028
Identities = 91/99 (91%)
Strand = Plus / Plus
Query: 380 gctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaacacgctcgaacg 439
|||| |||| ||| |||||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct: 1 gctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacacgctcgagcg 60
Query: 440 ccacccgaaggcgtcggcctactggttcagggacatgct 478
|||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 ccaccccaaggcgtcggcctactggttcagggacatgct 99
>gb|AU097647.1|AU097647 AU097647 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2874, mRNA sequence
Length = 353
Score = 129 bits (65), Expect = 3e-027
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 394 cgtccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgt 453
|||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 88 cgtccaagtttggtatcgtctacgtcgacttcaacacgctcgagcgccaccccaaggcgt 147
Query: 454 cggcctactggttcagggacatgct 478
|||||||||||||||||||||||||
Sbjct: 148 cggcctactggttcagggacatgct 172
>gb|CF312197.1|CF312197 ABF--07-M20.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--07-M20, mRNA sequence
Length = 453
Score = 119 bits (60), Expect = 2e-024
Identities = 198/243 (81%), Gaps = 1/243 (0%)
Strand = Plus / Plus
Query: 54 tactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccgattggacca 113
||||| ||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 201 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 260
Query: 114 caggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactac 173
||||| |||||||| ||||| ||||||| || | |||||||| | || |||||||||
Sbjct: 261 caggcaaattctaattggctttacatcgtgcctg-gnggatgtaccgatgtgtgaactac 319
Query: 174 ctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcct 233
||||| ||||||| |||||||| || || |||||| || ||||||||||| || |||
Sbjct: 320 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 379
Query: 234 ggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagc 293
| ||| | | ||| ||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct: 380 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 439
Query: 294 tac 296
|||
Sbjct: 440 tac 442
>gb|AU071104.1|AU071104 AU071104 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10744_2Z, mRNA sequence
Length = 362
Score = 101 bits (51), Expect = 6e-019
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 420 gacttcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggacatgct 478
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4 gacttcaacacgctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 62
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 882,034
Number of Sequences: 438736
Number of extensions: 882034
Number of successful extensions: 4649
Number of sequences better than 0.5: 96
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4290
Number of HSP's gapped (non-prelim): 302
length of query: 806
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 785
effective length of database: 2,791,206,460
effective search space: 2191097071100
effective search space used: 2191097071100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)