BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276425.2.1
(753 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK060863.1| Oryza sativa (japonica cultivar-group) cDNA... 341 3e-091
dbj|AK098859.1| Oryza sativa (japonica cultivar-group) cDNA... 341 3e-091
gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbar... 341 3e-091
gb|AACV01018663.1| Oryza sativa (japonica cultivar-group) c... 341 3e-091
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 341 3e-091
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 341 3e-091
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 341 3e-091
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 341 3e-091
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 341 3e-091
dbj|AK109538.1| Oryza sativa (japonica cultivar-group) cDNA... 315 2e-083
gb|AZ126493.1|AZ126493 OSJNBb0078E15r CUGI Rice BAC Library... 70 2e-009
gb|AU162344.1|AU162344 AU162344 Rice cDNA from immature lea... 70 2e-009
gb|CB669167.1|CB669167 OSJNEe01H08.r OSJNEe Oryza sativa (j... 70 2e-009
dbj|AK100984.1| Oryza sativa (japonica cultivar-group) cDNA... 70 2e-009
gb|AACV01004560.1| Oryza sativa (japonica cultivar-group) c... 70 2e-009
ref|XM_466075.1| Oryza sativa (japonica cultivar-group), mRNA 70 2e-009
dbj|AP004790.3| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 70 2e-009
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
gb|CB669166.1|CB669166 OSJNEe01H08.f OSJNEe Oryza sativa (j... 64 1e-007
gb|CB648301.1|CB648301 OSJNEb11J24.r OSJNEb Oryza sativa (j... 56 3e-005
gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbar... 52 4e-004
gb|AACV01006448.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AK110842.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC O... 50 0.002
ref|NT_107151.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|AACV01023972.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AK105101.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK105005.2| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
gb|AACV01006447.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
gb|AY873696.1|AY873696 06ET3_348_B_006_039_006H02 Oryza sat... 42 0.43
gb|AACV01002756.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.43
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 42 0.43
dbj|AP003286.3| Oryza sativa (japonica cultivar-group) geno... 42 0.43
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.43
>dbj|AK060863.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G06, full
insert sequence
Length = 1245
Score = 341 bits (172), Expect = 3e-091
Identities = 340/396 (85%)
Strand = Plus / Plus
Query: 5 tacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgggtac 64
|||||||| || ||| |||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 641 tacatccttgctacagagcgtgagaaatggggtgacaaggtgtaccttgagaatgggtat 700
Query: 65 tacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaattac 124
|||||||| || || ||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 701 tacctccatggatattggggtatcttggttgataggtatgaggaaatgcttgagaattac 760
Query: 125 aagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccg 184
| ||||| || || ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 761 catccaggacttggtgatcaccggtggccactggtcactcactttgtcggatgcaagccg 820
Query: 185 tgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattc 244
||||| || ||||| || |||||||| ||| | ||||||||| | ||||| ||||| |||
Sbjct: 821 tgtgggaagtttggggattaccctgtggagaggtgcctcaagcagatggagcgtgctttc 880
Query: 245 aattttggggataaccagatcttgcagatgtatgggttcacacacaagtcactagcaagc 304
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||
Sbjct: 881 aattttggggataatcagatcttgcaaatgtatgggtttacacacaagtcgcttggcagc 940
Query: 305 aggagagtgaagaggatcaggaacgagaccagcaacccacttgagacaaaggatgagctt 364
|||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 941 aggaaggtgaagaggatcaggaatgagactagcaacccacttgatgtcaaggatgaacta 1000
Query: 365 gggttgcttcatccagcattcaaggctgtgaagact 400
|||||||| || |||||||||||||| ||||||||
Sbjct: 1001 gggttgctccacccagcattcaaggccatgaagact 1036
Score = 54.0 bits (27), Expect = 1e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 529 ggatggatatctttgttgtaatgtgaggtgttaggagaattatgttatgtttatt 583
|||||||||||| ||||||||||||| | ||||||||| ||| ||||||||||
Sbjct: 1183 ggatggatatctatgttgtaatgtgaaattttaggagaacaatggtatgtttatt 1237
>dbj|AK098859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N01, full
insert sequence
Length = 1199
Score = 341 bits (172), Expect = 3e-091
Identities = 340/396 (85%)
Strand = Plus / Plus
Query: 5 tacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgggtac 64
|||||||| || ||| |||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 597 tacatccttgctacagagcgtgagaaatggggtgacaaggtgtaccttgagaatgggtat 656
Query: 65 tacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaattac 124
|||||||| || || ||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 657 tacctccatggatattggggtatcttggttgataggtatgaggaaatgcttgagaattac 716
Query: 125 aagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccg 184
| ||||| || || ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 717 catccaggacttggtgatcaccggtggccactggtcactcactttgtcggatgcaagccg 776
Query: 185 tgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattc 244
||||| || ||||| || |||||||| ||| | ||||||||| | ||||| ||||| |||
Sbjct: 777 tgtgggaagtttggggattaccctgtggagaggtgcctcaagcagatggagcgtgctttc 836
Query: 245 aattttggggataaccagatcttgcagatgtatgggttcacacacaagtcactagcaagc 304
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||
Sbjct: 837 aattttggggataatcagatcttgcaaatgtatgggtttacacacaagtcgcttggcagc 896
Query: 305 aggagagtgaagaggatcaggaacgagaccagcaacccacttgagacaaaggatgagctt 364
|||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 897 aggaaggtgaagaggatcaggaatgagactagcaacccacttgatgtcaaggatgaacta 956
Query: 365 gggttgcttcatccagcattcaaggctgtgaagact 400
|||||||| || |||||||||||||| ||||||||
Sbjct: 957 gggttgctccacccagcattcaaggccatgaagact 992
Score = 54.0 bits (27), Expect = 1e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 529 ggatggatatctttgttgtaatgtgaggtgttaggagaattatgttatgtttatt 583
|||||||||||| ||||||||||||| | ||||||||| ||| ||||||||||
Sbjct: 1139 ggatggatatctatgttgtaatgtgaaattttaggagaacaatggtatgtttatt 1193
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0036G02, from chromosome 3, complete sequence
Length = 153308
Score = 341 bits (172), Expect = 3e-091
Identities = 340/396 (85%)
Strand = Plus / Minus
Query: 5 tacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgggtac 64
|||||||| || ||| |||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 75873 tacatccttgctacagagcgtgagaaatggggtgacaaggtgtaccttgagaatgggtat 75814
Query: 65 tacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaattac 124
|||||||| || || ||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 75813 tacctccatggatattggggtatcttggttgataggtatgaggaaatgcttgagaattac 75754
Query: 125 aagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccg 184
| ||||| || || ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 75753 catccaggacttggtgatcaccggtggccactggtcactcactttgtcggatgcaagccg 75694
Query: 185 tgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattc 244
||||| || ||||| || |||||||| ||| | ||||||||| | ||||| ||||| |||
Sbjct: 75693 tgtgggaagtttggggattaccctgtggagaggtgcctcaagcagatggagcgtgctttc 75634
Query: 245 aattttggggataaccagatcttgcagatgtatgggttcacacacaagtcactagcaagc 304
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||
Sbjct: 75633 aattttggggataatcagatcttgcaaatgtatgggtttacacacaagtcgcttggcagc 75574
Query: 305 aggagagtgaagaggatcaggaacgagaccagcaacccacttgagacaaaggatgagctt 364
|||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 75573 aggaaggtgaagaggatcaggaatgagactagcaacccacttgatgtcaaggatgaacta 75514
Query: 365 gggttgcttcatccagcattcaaggctgtgaagact 400
|||||||| || |||||||||||||| ||||||||
Sbjct: 75513 gggttgctccacccagcattcaaggccatgaagact 75478
Score = 60.0 bits (30), Expect = 2e-006
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 529 ggatggatatctttgttgtaatgtgaggtgttaggagaattatgttatgtttatttattg 588
|||||||||||| ||||||||||||| | ||||||||| ||| |||||||| || ||
Sbjct: 75331 ggatggatatctatgttgtaatgtgaaattttaggagaacaatggtatgttta-ttgctg 75273
Query: 589 gcataagttatgtcttac 606
|||||| |||||||||||
Sbjct: 75272 gcataatttatgtcttac 75255
>gb|AACV01018663.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018663, whole
genome shotgun sequence
Length = 28704
Score = 341 bits (172), Expect = 3e-091
Identities = 340/396 (85%)
Strand = Plus / Plus
Query: 5 tacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgggtac 64
|||||||| || ||| |||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 2628 tacatccttgctacagagcgtgagaaatggggtgacaaggtgtaccttgagaatgggtat 2687
Query: 65 tacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaattac 124
|||||||| || || ||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 2688 tacctccatggatattggggtatcttggttgataggtatgaggaaatgcttgagaattac 2747
Query: 125 aagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccg 184
| ||||| || || ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 2748 catccaggacttggtgatcaccggtggccactggtcactcactttgtcggatgcaagccg 2807
Query: 185 tgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattc 244
||||| || ||||| || |||||||| ||| | ||||||||| | ||||| ||||| |||
Sbjct: 2808 tgtgggaagtttggggattaccctgtggagaggtgcctcaagcagatggagcgtgctttc 2867
Query: 245 aattttggggataaccagatcttgcagatgtatgggttcacacacaagtcactagcaagc 304
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||
Sbjct: 2868 aattttggggataatcagatcttgcaaatgtatgggtttacacacaagtcgcttggcagc 2927
Query: 305 aggagagtgaagaggatcaggaacgagaccagcaacccacttgagacaaaggatgagctt 364
|||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 2928 aggaaggtgaagaggatcaggaatgagactagcaacccacttgatgtcaaggatgaacta 2987
Query: 365 gggttgcttcatccagcattcaaggctgtgaagact 400
|||||||| || |||||||||||||| ||||||||
Sbjct: 2988 gggttgctccacccagcattcaaggccatgaagact 3023
Score = 60.0 bits (30), Expect = 2e-006
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 529 ggatggatatctttgttgtaatgtgaggtgttaggagaattatgttatgtttatttattg 588
|||||||||||| ||||||||||||| | ||||||||| ||| |||||||| || ||
Sbjct: 3170 ggatggatatctatgttgtaatgtgaaattttaggagaacaatggtatgttta-ttgctg 3228
Query: 589 gcataagttatgtcttac 606
|||||| |||||||||||
Sbjct: 3229 gcataatttatgtcttac 3246
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 341 bits (172), Expect = 3e-091
Identities = 340/396 (85%)
Strand = Plus / Minus
Query: 5 tacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgggtac 64
|||||||| || ||| |||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 1863977 tacatccttgctacagagcgtgagaaatggggtgacaaggtgtaccttgagaatgggtat 1863918
Query: 65 tacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaattac 124
|||||||| || || ||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 1863917 tacctccatggatattggggtatcttggttgataggtatgaggaaatgcttgagaattac 1863858
Query: 125 aagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccg 184
| ||||| || || ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 1863857 catccaggacttggtgatcaccggtggccactggtcactcactttgtcggatgcaagccg 1863798
Query: 185 tgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattc 244
||||| || ||||| || |||||||| ||| | ||||||||| | ||||| ||||| |||
Sbjct: 1863797 tgtgggaagtttggggattaccctgtggagaggtgcctcaagcagatggagcgtgctttc 1863738
Query: 245 aattttggggataaccagatcttgcagatgtatgggttcacacacaagtcactagcaagc 304
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||
Sbjct: 1863737 aattttggggataatcagatcttgcaaatgtatgggtttacacacaagtcgcttggcagc 1863678
Query: 305 aggagagtgaagaggatcaggaacgagaccagcaacccacttgagacaaaggatgagctt 364
|||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 1863677 aggaaggtgaagaggatcaggaatgagactagcaacccacttgatgtcaaggatgaacta 1863618
Query: 365 gggttgcttcatccagcattcaaggctgtgaagact 400
|||||||| || |||||||||||||| ||||||||
Sbjct: 1863617 gggttgctccacccagcattcaaggccatgaagact 1863582
Score = 60.0 bits (30), Expect = 2e-006
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 529 ggatggatatctttgttgtaatgtgaggtgttaggagaattatgttatgtttatttattg 588
|||||||||||| ||||||||||||| | ||||||||| ||| |||||||| || ||
Sbjct: 1863435 ggatggatatctatgttgtaatgtgaaattttaggagaacaatggtatgttta-ttgctg 1863377
Query: 589 gcataagttatgtcttac 606
|||||| |||||||||||
Sbjct: 1863376 gcataatttatgtcttac 1863359
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 145 ccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 2181473 ccggtggccgttcgtcacgcacttcgtcgggtgcaagccgtg 2181514
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 131 gggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||||| |||||||||| || |||| ||||| ||||| |||||||||||
Sbjct: 2170245 gggctcggcgacgaccggtggccgctgatcacgcacttcgtcggctgcaagccgtg 2170190
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 92 gtcgacaggtacgaggagatgc 113
||||||||||||||||||||||
Sbjct: 2170287 gtcgacaggtacgaggagatgc 2170266
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 341 bits (172), Expect = 3e-091
Identities = 340/396 (85%)
Strand = Plus / Plus
Query: 5 tacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgggtac 64
|||||||| || ||| |||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 14009657 tacatccttgctacagagcgtgagaaatggggtgacaaggtgtaccttgagaatgggtat 14009716
Query: 65 tacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaattac 124
|||||||| || || ||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 14009717 tacctccatggatattggggtatcttggttgataggtatgaggaaatgcttgagaattac 14009776
Query: 125 aagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccg 184
| ||||| || || ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 14009777 catccaggacttggtgatcaccggtggccactggtcactcactttgtcggatgcaagccg 14009836
Query: 185 tgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattc 244
||||| || ||||| || |||||||| ||| | ||||||||| | ||||| ||||| |||
Sbjct: 14009837 tgtgggaagtttggggattaccctgtggagaggtgcctcaagcagatggagcgtgctttc 14009896
Query: 245 aattttggggataaccagatcttgcagatgtatgggttcacacacaagtcactagcaagc 304
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||
Sbjct: 14009897 aattttggggataatcagatcttgcaaatgtatgggtttacacacaagtcgcttggcagc 14009956
Query: 305 aggagagtgaagaggatcaggaacgagaccagcaacccacttgagacaaaggatgagctt 364
|||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 14009957 aggaaggtgaagaggatcaggaatgagactagcaacccacttgatgtcaaggatgaacta 14010016
Query: 365 gggttgcttcatccagcattcaaggctgtgaagact 400
|||||||| || |||||||||||||| ||||||||
Sbjct: 14010017 gggttgctccacccagcattcaaggccatgaagact 14010052
Score = 60.0 bits (30), Expect = 2e-006
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 529 ggatggatatctttgttgtaatgtgaggtgttaggagaattatgttatgtttatttattg 588
|||||||||||| ||||||||||||| | ||||||||| ||| |||||||| || ||
Sbjct: 14010199 ggatggatatctatgttgtaatgtgaaattttaggagaacaatggtatgttta-ttgctg 14010257
Query: 589 gcataagttatgtcttac 606
|||||| |||||||||||
Sbjct: 14010258 gcataatttatgtcttac 14010275
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 341 bits (172), Expect = 3e-091
Identities = 340/396 (85%)
Strand = Plus / Plus
Query: 5 tacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgggtac 64
|||||||| || ||| |||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 21611663 tacatccttgctacagagcgtgagaaatggggtgacaaggtgtaccttgagaatgggtat 21611722
Query: 65 tacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaattac 124
|||||||| || || ||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 21611723 tacctccatggatattggggtatcttggttgataggtatgaggaaatgcttgagaattac 21611782
Query: 125 aagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccg 184
| ||||| || || ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 21611783 catccaggacttggtgatcaccggtggccactggtcactcactttgtcggatgcaagccg 21611842
Query: 185 tgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattc 244
||||| || ||||| || |||||||| ||| | ||||||||| | ||||| ||||| |||
Sbjct: 21611843 tgtgggaagtttggggattaccctgtggagaggtgcctcaagcagatggagcgtgctttc 21611902
Query: 245 aattttggggataaccagatcttgcagatgtatgggttcacacacaagtcactagcaagc 304
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||
Sbjct: 21611903 aattttggggataatcagatcttgcaaatgtatgggtttacacacaagtcgcttggcagc 21611962
Query: 305 aggagagtgaagaggatcaggaacgagaccagcaacccacttgagacaaaggatgagctt 364
|||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 21611963 aggaaggtgaagaggatcaggaatgagactagcaacccacttgatgtcaaggatgaacta 21612022
Query: 365 gggttgcttcatccagcattcaaggctgtgaagact 400
|||||||| || |||||||||||||| ||||||||
Sbjct: 21612023 gggttgctccacccagcattcaaggccatgaagact 21612058
Score = 60.0 bits (30), Expect = 2e-006
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 529 ggatggatatctttgttgtaatgtgaggtgttaggagaattatgttatgtttatttattg 588
|||||||||||| ||||||||||||| | ||||||||| ||| |||||||| || ||
Sbjct: 21612205 ggatggatatctatgttgtaatgtgaaattttaggagaacaatggtatgttta-ttgctg 21612263
Query: 589 gcataagttatgtcttac 606
|||||| |||||||||||
Sbjct: 21612264 gcataatttatgtcttac 21612281
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 341 bits (172), Expect = 3e-091
Identities = 340/396 (85%)
Strand = Plus / Minus
Query: 5 tacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgggtac 64
|||||||| || ||| |||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 10518161 tacatccttgctacagagcgtgagaaatggggtgacaaggtgtaccttgagaatgggtat 10518102
Query: 65 tacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaattac 124
|||||||| || || ||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 10518101 tacctccatggatattggggtatcttggttgataggtatgaggaaatgcttgagaattac 10518042
Query: 125 aagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccg 184
| ||||| || || ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 10518041 catccaggacttggtgatcaccggtggccactggtcactcactttgtcggatgcaagccg 10517982
Query: 185 tgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattc 244
||||| || ||||| || |||||||| ||| | ||||||||| | ||||| ||||| |||
Sbjct: 10517981 tgtgggaagtttggggattaccctgtggagaggtgcctcaagcagatggagcgtgctttc 10517922
Query: 245 aattttggggataaccagatcttgcagatgtatgggttcacacacaagtcactagcaagc 304
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||
Sbjct: 10517921 aattttggggataatcagatcttgcaaatgtatgggtttacacacaagtcgcttggcagc 10517862
Query: 305 aggagagtgaagaggatcaggaacgagaccagcaacccacttgagacaaaggatgagctt 364
|||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 10517861 aggaaggtgaagaggatcaggaatgagactagcaacccacttgatgtcaaggatgaacta 10517802
Query: 365 gggttgcttcatccagcattcaaggctgtgaagact 400
|||||||| || |||||||||||||| ||||||||
Sbjct: 10517801 gggttgctccacccagcattcaaggccatgaagact 10517766
Score = 60.0 bits (30), Expect = 2e-006
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 529 ggatggatatctttgttgtaatgtgaggtgttaggagaattatgttatgtttatttattg 588
|||||||||||| ||||||||||||| | ||||||||| ||| |||||||| || ||
Sbjct: 10517619 ggatggatatctatgttgtaatgtgaaattttaggagaacaatggtatgttta-ttgctg 10517561
Query: 589 gcataagttatgtcttac 606
|||||| |||||||||||
Sbjct: 10517560 gcataatttatgtcttac 10517543
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 145 ccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 10835657 ccggtggccgttcgtcacgcacttcgtcgggtgcaagccgtg 10835698
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 131 gggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||||| |||||||||| || |||| ||||| ||||| |||||||||||
Sbjct: 10824429 gggctcggcgacgaccggtggccgctgatcacgcacttcgtcggctgcaagccgtg 10824374
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 92 gtcgacaggtacgaggagatgc 113
||||||||||||||||||||||
Sbjct: 10824471 gtcgacaggtacgaggagatgc 10824450
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 341 bits (172), Expect = 3e-091
Identities = 340/396 (85%)
Strand = Plus / Minus
Query: 5 tacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgggtac 64
|||||||| || ||| |||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 10520060 tacatccttgctacagagcgtgagaaatggggtgacaaggtgtaccttgagaatgggtat 10520001
Query: 65 tacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaattac 124
|||||||| || || ||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 10520000 tacctccatggatattggggtatcttggttgataggtatgaggaaatgcttgagaattac 10519941
Query: 125 aagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccg 184
| ||||| || || ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 10519940 catccaggacttggtgatcaccggtggccactggtcactcactttgtcggatgcaagccg 10519881
Query: 185 tgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattc 244
||||| || ||||| || |||||||| ||| | ||||||||| | ||||| ||||| |||
Sbjct: 10519880 tgtgggaagtttggggattaccctgtggagaggtgcctcaagcagatggagcgtgctttc 10519821
Query: 245 aattttggggataaccagatcttgcagatgtatgggttcacacacaagtcactagcaagc 304
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||
Sbjct: 10519820 aattttggggataatcagatcttgcaaatgtatgggtttacacacaagtcgcttggcagc 10519761
Query: 305 aggagagtgaagaggatcaggaacgagaccagcaacccacttgagacaaaggatgagctt 364
|||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 10519760 aggaaggtgaagaggatcaggaatgagactagcaacccacttgatgtcaaggatgaacta 10519701
Query: 365 gggttgcttcatccagcattcaaggctgtgaagact 400
|||||||| || |||||||||||||| ||||||||
Sbjct: 10519700 gggttgctccacccagcattcaaggccatgaagact 10519665
Score = 60.0 bits (30), Expect = 2e-006
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 529 ggatggatatctttgttgtaatgtgaggtgttaggagaattatgttatgtttatttattg 588
|||||||||||| ||||||||||||| | ||||||||| ||| |||||||| || ||
Sbjct: 10519518 ggatggatatctatgttgtaatgtgaaattttaggagaacaatggtatgttta-ttgctg 10519460
Query: 589 gcataagttatgtcttac 606
|||||| |||||||||||
Sbjct: 10519459 gcataatttatgtcttac 10519442
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 145 ccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 10837556 ccggtggccgttcgtcacgcacttcgtcgggtgcaagccgtg 10837597
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 131 gggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||||| |||||||||| || |||| ||||| ||||| |||||||||||
Sbjct: 10826328 gggctcggcgacgaccggtggccgctgatcacgcacttcgtcggctgcaagccgtg 10826273
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 92 gtcgacaggtacgaggagatgc 113
||||||||||||||||||||||
Sbjct: 10826370 gtcgacaggtacgaggagatgc 10826349
>dbj|AK109538.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-D08, full
insert sequence
Length = 2492
Score = 315 bits (159), Expect = 2e-083
Identities = 324/379 (85%)
Strand = Plus / Minus
Query: 5 tacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgggtac 64
|||||||| || ||| |||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 379 tacatccttgctacagagcgtgagaaatggggtgacaaggtgtaccttgagaatgggtat 320
Query: 65 tacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaattac 124
|||||||| || || ||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 319 tacctccatggatattggggtatcttggttgataggtatgaggaaatgcttgagaattac 260
Query: 125 aagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccg 184
| ||||| || || ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 259 catccaggacttggtgatcaccggtggccactggtcactcactttgtcggatgcaagccg 200
Query: 185 tgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattc 244
||||| || ||||| || |||||||| ||| | ||| ||||| | ||||| ||||| |||
Sbjct: 199 tgtgggaagtttggggattaccctgtggagaggtgcttcaagcagatggagcgtgctttc 140
Query: 245 aattttggggataaccagatcttgcagatgtatgggttcacacacaagtcactagcaagc 304
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||
Sbjct: 139 aattttggggataatcagatcttgcaaatgtatgggtttacacacaagtcgcttggcagc 80
Query: 305 aggagagtgaagaggatcaggaacgagaccagcaacccacttgagacaaaggatgagctt 364
|||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 79 aggaaggtgaagaggatcaggaatgagactagcaacccacttgatgtcaaggatgaacta 20
Query: 365 gggttgcttcatccagcat 383
|||||||| || |||||||
Sbjct: 19 gggttgctccacccagcat 1
>gb|AZ126493.1|AZ126493 OSJNBb0078E15r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0078E15r, DNA
sequence
Length = 414
Score = 69.9 bits (35), Expect = 2e-009
Identities = 131/163 (80%)
Strand = Plus / Plus
Query: 100 gtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggtggccactcgt 159
||||||||||||| | ||||| || | || |||||||| ||| | ||||||||| ||||
Sbjct: 39 gtacgaggagatgatggagaaccaccatccggggctcggggatgagcggtggccattcgt 98
Query: 160 cacacactttgtcgggtgcaagccgtgtggcaaatttggagactaccctgtcgagcgatg 219
|| || ||||||||||||||||| ||||| | | ||| || || ||||| ||||| ||
Sbjct: 99 gactcattttgtcgggtgcaagccatgtggaagctatggggattatcctgtggagcggtg 158
Query: 220 cctcaagaatatggaccgtgcattcaattttggggataaccag 262
|||| || |||||| || ||||| ||||||| |||||||||
Sbjct: 159 tctcaggagtatggagcgagcatttaattttgccgataaccag 201
>gb|AU162344.1|AU162344 AU162344 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61345, mRNA sequence
Length = 613
Score = 69.9 bits (35), Expect = 2e-009
Identities = 131/163 (80%)
Strand = Plus / Plus
Query: 100 gtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggtggccactcgt 159
||||||||||||| | ||||| || | || |||||||| ||| | ||||||||| ||||
Sbjct: 23 gtacgaggagatgatggagaaccaccatccggggctcggggatgagcggtggccattcgt 82
Query: 160 cacacactttgtcgggtgcaagccgtgtggcaaatttggagactaccctgtcgagcgatg 219
|| || ||||||||||||||||| ||||| | | ||| || || ||||| ||||| ||
Sbjct: 83 gactcattttgtcgggtgcaagccatgtggaagctatggggattatcctgtggagcggtg 142
Query: 220 cctcaagaatatggaccgtgcattcaattttggggataaccag 262
|||| || |||||| || ||||| ||||||| |||||||||
Sbjct: 143 tctcaggagtatggagcgagcatttaattttgccgataaccag 185
>gb|CB669167.1|CB669167 OSJNEe01H08.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe01H08 3', mRNA sequence
Length = 825
Score = 69.9 bits (35), Expect = 2e-009
Identities = 131/163 (80%)
Strand = Plus / Minus
Query: 100 gtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggtggccactcgt 159
||||||||||||| | ||||| || | || |||||||| ||| | ||||||||| ||||
Sbjct: 586 gtacgaggagatgatggagaaccaccatccggggctcggggatgagcggtggccattcgt 527
Query: 160 cacacactttgtcgggtgcaagccgtgtggcaaatttggagactaccctgtcgagcgatg 219
|| || ||||||||||||||||| ||||| | | ||| || || ||||| ||||| ||
Sbjct: 526 gactcattttgtcgggtgcaagccatgtggaagctatggggattatcctgtggagcggtg 467
Query: 220 cctcaagaatatggaccgtgcattcaattttggggataaccag 262
|||| || |||||| || ||||| ||||||| |||||||||
Sbjct: 466 tctcaggagtatggagcgagcatttaattttgccgataaccag 424
>dbj|AK100984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145D01, full
insert sequence
Length = 1910
Score = 69.9 bits (35), Expect = 2e-009
Identities = 131/163 (80%)
Strand = Plus / Plus
Query: 100 gtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggtggccactcgt 159
||||||||||||| | ||||| || | || |||||||| ||| | ||||||||| ||||
Sbjct: 1428 gtacgaggagatgatggagaaccaccatccggggctcggggatgagcggtggccattcgt 1487
Query: 160 cacacactttgtcgggtgcaagccgtgtggcaaatttggagactaccctgtcgagcgatg 219
|| || ||||||||||||||||| ||||| | | ||| || || ||||| ||||| ||
Sbjct: 1488 gactcattttgtcgggtgcaagccatgtggaagctatggggattatcctgtggagcggtg 1547
Query: 220 cctcaagaatatggaccgtgcattcaattttggggataaccag 262
|||| || |||||| || ||||| ||||||| |||||||||
Sbjct: 1548 tctcaggagtatggagcgagcatttaattttgccgataaccag 1590
>gb|AACV01004560.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004560, whole
genome shotgun sequence
Length = 71882
Score = 69.9 bits (35), Expect = 2e-009
Identities = 131/163 (80%)
Strand = Plus / Minus
Query: 100 gtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggtggccactcgt 159
||||||||||||| | ||||| || | || |||||||| ||| | ||||||||| ||||
Sbjct: 14178 gtacgaggagatgatggagaaccaccatccggggctcggggatgagcggtggccattcgt 14119
Query: 160 cacacactttgtcgggtgcaagccgtgtggcaaatttggagactaccctgtcgagcgatg 219
|| || ||||||||||||||||| ||||| | | ||| || || ||||| ||||| ||
Sbjct: 14118 gactcattttgtcgggtgcaagccatgtggaagctatggggattatcctgtggagcggtg 14059
Query: 220 cctcaagaatatggaccgtgcattcaattttggggataaccag 262
|||| || |||||| || ||||| ||||||| |||||||||
Sbjct: 14058 tctcaggagtatggagcgagcatttaattttgccgataaccag 14016
>ref|XM_466075.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1910
Score = 69.9 bits (35), Expect = 2e-009
Identities = 131/163 (80%)
Strand = Plus / Plus
Query: 100 gtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggtggccactcgt 159
||||||||||||| | ||||| || | || |||||||| ||| | ||||||||| ||||
Sbjct: 1428 gtacgaggagatgatggagaaccaccatccggggctcggggatgagcggtggccattcgt 1487
Query: 160 cacacactttgtcgggtgcaagccgtgtggcaaatttggagactaccctgtcgagcgatg 219
|| || ||||||||||||||||| ||||| | | ||| || || ||||| ||||| ||
Sbjct: 1488 gactcattttgtcgggtgcaagccatgtggaagctatggggattatcctgtggagcggtg 1547
Query: 220 cctcaagaatatggaccgtgcattcaattttggggataaccag 262
|||| || |||||| || ||||| ||||||| |||||||||
Sbjct: 1548 tctcaggagtatggagcgagcatttaattttgccgataaccag 1590
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0476H10
Length = 151703
Score = 69.9 bits (35), Expect = 2e-009
Identities = 131/163 (80%)
Strand = Plus / Minus
Query: 100 gtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggtggccactcgt 159
||||||||||||| | ||||| || | || |||||||| ||| | ||||||||| ||||
Sbjct: 89078 gtacgaggagatgatggagaaccaccatccggggctcggggatgagcggtggccattcgt 89019
Query: 160 cacacactttgtcgggtgcaagccgtgtggcaaatttggagactaccctgtcgagcgatg 219
|| || ||||||||||||||||| ||||| | | ||| || || ||||| ||||| ||
Sbjct: 89018 gactcattttgtcgggtgcaagccatgtggaagctatggggattatcctgtggagcggtg 88959
Query: 220 cctcaagaatatggaccgtgcattcaattttggggataaccag 262
|||| || |||||| || ||||| ||||||| |||||||||
Sbjct: 88958 tctcaggagtatggagcgagcatttaattttgccgataaccag 88916
>ref|NT_107180.1| Oryza sativa (japonica cultivar-group)
Length = 6019143
Score = 69.9 bits (35), Expect = 2e-009
Identities = 131/163 (80%)
Strand = Plus / Minus
Query: 100 gtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggtggccactcgt 159
||||||||||||| | ||||| || | || |||||||| ||| | ||||||||| ||||
Sbjct: 655793 gtacgaggagatgatggagaaccaccatccggggctcggggatgagcggtggccattcgt 655734
Query: 160 cacacactttgtcgggtgcaagccgtgtggcaaatttggagactaccctgtcgagcgatg 219
|| || ||||||||||||||||| ||||| | | ||| || || ||||| ||||| ||
Sbjct: 655733 gactcattttgtcgggtgcaagccatgtggaagctatggggattatcctgtggagcggtg 655674
Query: 220 cctcaagaatatggaccgtgcattcaattttggggataaccag 262
|||| || |||||| || ||||| ||||||| |||||||||
Sbjct: 655673 tctcaggagtatggagcgagcatttaattttgccgataaccag 655631
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 69.9 bits (35), Expect = 2e-009
Identities = 131/163 (80%)
Strand = Plus / Minus
Query: 100 gtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggtggccactcgt 159
||||||||||||| | ||||| || | || |||||||| ||| | ||||||||| ||||
Sbjct: 5843931 gtacgaggagatgatggagaaccaccatccggggctcggggatgagcggtggccattcgt 5843872
Query: 160 cacacactttgtcgggtgcaagccgtgtggcaaatttggagactaccctgtcgagcgatg 219
|| || ||||||||||||||||| ||||| | | ||| || || ||||| ||||| ||
Sbjct: 5843871 gactcattttgtcgggtgcaagccatgtggaagctatggggattatcctgtggagcggtg 5843812
Query: 220 cctcaagaatatggaccgtgcattcaattttggggataaccag 262
|||| || |||||| || ||||| ||||||| |||||||||
Sbjct: 5843811 tctcaggagtatggagcgagcatttaattttgccgataaccag 5843769
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 69.9 bits (35), Expect = 2e-009
Identities = 131/163 (80%)
Strand = Plus / Minus
Query: 100 gtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggtggccactcgt 159
||||||||||||| | ||||| || | || |||||||| ||| | ||||||||| ||||
Sbjct: 19296995 gtacgaggagatgatggagaaccaccatccggggctcggggatgagcggtggccattcgt 19296936
Query: 160 cacacactttgtcgggtgcaagccgtgtggcaaatttggagactaccctgtcgagcgatg 219
|| || ||||||||||||||||| ||||| | | ||| || || ||||| ||||| ||
Sbjct: 19296935 gactcattttgtcgggtgcaagccatgtggaagctatggggattatcctgtggagcggtg 19296876
Query: 220 cctcaagaatatggaccgtgcattcaattttggggataaccag 262
|||| || |||||| || ||||| ||||||| |||||||||
Sbjct: 19296875 tctcaggagtatggagcgagcatttaattttgccgataaccag 19296833
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 69.9 bits (35), Expect = 2e-009
Identities = 131/163 (80%)
Strand = Plus / Minus
Query: 100 gtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggtggccactcgt 159
||||||||||||| | ||||| || | || |||||||| ||| | ||||||||| ||||
Sbjct: 19471551 gtacgaggagatgatggagaaccaccatccggggctcggggatgagcggtggccattcgt 19471492
Query: 160 cacacactttgtcgggtgcaagccgtgtggcaaatttggagactaccctgtcgagcgatg 219
|| || ||||||||||||||||| ||||| | | ||| || || ||||| ||||| ||
Sbjct: 19471491 gactcattttgtcgggtgcaagccatgtggaagctatggggattatcctgtggagcggtg 19471432
Query: 220 cctcaagaatatggaccgtgcattcaattttggggataaccag 262
|||| || |||||| || ||||| ||||||| |||||||||
Sbjct: 19471431 tctcaggagtatggagcgagcatttaattttgccgataaccag 19471389
>gb|CB669166.1|CB669166 OSJNEe01H08.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe01H08 5', mRNA sequence
Length = 664
Score = 63.9 bits (32), Expect = 1e-007
Identities = 107/132 (81%)
Strand = Plus / Minus
Query: 131 gggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccgtgtggc 190
|||||||| ||| | ||||||||| |||| || || ||||||||||||||||| |||||
Sbjct: 441 gggctcggggatgagcggtggccattcgtgactcattttgtcgggtgcaagccatgtgga 382
Query: 191 aaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattcaatttt 250
| | ||| || || ||||| ||||| || |||| || |||||| || ||||| ||||||
Sbjct: 381 agctatggggattatcctgtggagcggtgtctcaggagtatggagcgagcatttaatttt 322
Query: 251 ggggataaccag 262
| |||||||||
Sbjct: 321 gccgataaccag 310
>gb|CB648301.1|CB648301 OSJNEb11J24.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11J24 3', mRNA sequence
Length = 787
Score = 56.0 bits (28), Expect = 3e-005
Identities = 106/132 (80%)
Strand = Plus / Minus
Query: 131 gggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccgtgtggc 190
|||||||| ||| | ||||||||| |||| || || ||||||||||||||||| |||||
Sbjct: 524 gggctcggggatgagcggtggccattcgtgactcattttgtcgggtgcaagccatgtgga 465
Query: 191 aaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattcaatttt 250
| | ||| || || ||||| ||||| || ||| || |||||| || ||||| ||||||
Sbjct: 464 agctatggggattatcctgtggagcggtgtttcaggagtatggagcgagcatttaatttt 405
Query: 251 ggggataaccag 262
| |||||||||
Sbjct: 404 gccgataaccag 393
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08,
from chromosome 3, complete sequence
Length = 108833
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 145 ccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 17331 ccggtggccgttcgtcacgcacttcgtcgggtgcaagccgtg 17290
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 131 gggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||||| |||||||||| || |||| ||||| ||||| |||||||||||
Sbjct: 28559 gggctcggcgacgaccggtggccgctgatcacgcacttcgtcggctgcaagccgtg 28614
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 gtcgacaggtacgaggagatgc 113
||||||||||||||||||||||
Sbjct: 28517 gtcgacaggtacgaggagatgc 28538
>gb|AACV01006448.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006448, whole
genome shotgun sequence
Length = 66537
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 145 ccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 64311 ccggtggccgttcgtcacgcacttcgtcgggtgcaagccgtg 64270
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 145 ccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 10917029 ccggtggccgttcgtcacgcacttcgtcgggtgcaagccgtg 10917070
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 131 gggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||||| |||||||||| || |||| ||||| ||||| |||||||||||
Sbjct: 10905216 gggctcggcgacgaccggtggccgctgatcacgcacttcgtcggctgcaagccgtg 10905161
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 92 gtcgacaggtacgaggagatgc 113
||||||||||||||||||||||
Sbjct: 10905258 gtcgacaggtacgaggagatgc 10905237
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 145 ccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 11109391 ccggtggccgttcgtcacgcacttcgtcgggtgcaagccgtg 11109432
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 131 gggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||||| |||||||||| || |||| ||||| ||||| |||||||||||
Sbjct: 11097578 gggctcggcgacgaccggtggccgctgatcacgcacttcgtcggctgcaagccgtg 11097523
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 92 gtcgacaggtacgaggagatgc 113
||||||||||||||||||||||
Sbjct: 11097620 gtcgacaggtacgaggagatgc 11097599
>dbj|AK110842.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B07, full
insert sequence
Length = 1540
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 146 cggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
|||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 1194 cggtggccgttcgtcacccacttcgtcgggtgcaagccgtg 1234
>emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb0050K10 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 122901
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 146 cggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
|||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 110770 cggtggccgttcgtcacccacttcgtcgggtgcaagccgtg 110810
>ref|NT_107151.1| Oryza sativa (japonica cultivar-group)
Length = 901339
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 146 cggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
|||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 463615 cggtggccgttcgtcacccacttcgtcgggtgcaagccgtg 463575
>gb|AACV01023972.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg023972, whole
genome shotgun sequence
Length = 17692
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 146 cggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
|||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 10122 cggtggccgttcgtcacccacttcgtcgggtgcaagccgtg 10082
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 146 cggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
|||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 2280181 cggtggccgttcgtcacccacttcgtcgggtgcaagccgtg 2280141
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 146 cggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
|||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 2280181 cggtggccgttcgtcacccacttcgtcgggtgcaagccgtg 2280141
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 146 cggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
|||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 2432722 cggtggccgttcgtcacccacttcgtcgggtgcaagccgtg 2432682
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 146 cggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
|||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 2432666 cggtggccgttcgtcacccacttcgtcgggtgcaagccgtg 2432626
>dbj|AK105101.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D03, full
insert sequence
Length = 1725
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 131 gggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||||| |||||||||| || |||| ||||| ||||| |||||||||||
Sbjct: 1200 gggctcggcgacgaccggtggccgctgatcacgcacttcgtcggctgcaagccgtg 1255
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 gtcgacaggtacgaggagatgc 113
||||||||||||||||||||||
Sbjct: 1158 gtcgacaggtacgaggagatgc 1179
>dbj|AK105005.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-B09, full
insert sequence
Length = 1603
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 131 gggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||||| |||||||||| || |||| ||||| ||||| |||||||||||
Sbjct: 1200 gggctcggcgacgaccggtggccgctgatcacgcacttcgtcggctgcaagccgtg 1255
>gb|AACV01006447.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006447, whole
genome shotgun sequence
Length = 13114
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 131 gggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccgtg 186
||||||||||| |||||||||| || |||| ||||| ||||| |||||||||||
Sbjct: 9537 gggctcggcgacgaccggtggccgctgatcacgcacttcgtcggctgcaagccgtg 9592
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 gtcgacaggtacgaggagatgc 113
||||||||||||||||||||||
Sbjct: 9495 gtcgacaggtacgaggagatgc 9516
>gb|AY873696.1|AY873696 06ET3_348_B_006_039_006H02 Oryza sativa (japonica cultivar-group)
transposon insertional mutants Oryza sativa (japonica
cultivar-group) genomic clone
06ET3_348_B_006_039_006H02, DNA sequence
Length = 121
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 677 tttttctcttgcggggatttc 697
|||||||||||||||||||||
Sbjct: 82 tttttctcttgcggggatttc 102
>gb|AACV01002756.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002756, whole
genome shotgun sequence
Length = 49084
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 677 tttttctcttgcggggatttc 697
|||||||||||||||||||||
Sbjct: 7343 tttttctcttgcggggatttc 7323
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 677 tttttctcttgcggggatttc 697
|||||||||||||||||||||
Sbjct: 37695409 tttttctcttgcggggatttc 37695389
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 677 tttttctcttgcggggatttc 697
|||||||||||||||||||||
Sbjct: 12142792 tttttctcttgcggggatttc 12142772
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0677H08
Length = 178830
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 677 tttttctcttgcggggatttc 697
|||||||||||||||||||||
Sbjct: 75213 tttttctcttgcggggatttc 75193
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 677 tttttctcttgcggggatttc 697
|||||||||||||||||||||
Sbjct: 11872753 tttttctcttgcggggatttc 11872733
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 677 tttttctcttgcggggatttc 697
|||||||||||||||||||||
Sbjct: 37074474 tttttctcttgcggggatttc 37074454
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 677 tttttctcttgcggggatttc 697
|||||||||||||||||||||
Sbjct: 37614739 tttttctcttgcggggatttc 37614719
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,020,694
Number of Sequences: 438736
Number of extensions: 1020694
Number of successful extensions: 4840
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4514
Number of HSP's gapped (non-prelim): 310
length of query: 753
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 732
effective length of database: 2,791,206,460
effective search space: 2043163128720
effective search space used: 2043163128720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)