BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192890.2.1
(531 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|D15471.1|D15471 RICC0687A Rice callus Oryza sativa (japo... 151 4e-034
gb|AU076174.1|AU076174 AU076174 Rice cDNA from immature lea... 151 4e-034
gb|AU076188.1|AU076188 AU076188 Rice cDNA from immature lea... 151 4e-034
gb|AU076189.1|AU076189 AU076189 Rice cDNA from immature lea... 151 4e-034
gb|AU161755.1|AU161755 AU161755 Rice shoot Oryza sativa (ja... 151 4e-034
gb|CF279379.1|CF279379 14ETL--05-K14.b1 Rice etiolated leaf... 151 4e-034
gb|CF317277.1|CF317277 HD--06-O17.b1 OsHDAC1-overexpressing... 151 4e-034
gb|CF317278.1|CF317278 HD--06-O17.g1 OsHDAC1-overexpressing... 151 4e-034
dbj|AK059058.1| Oryza sativa (japonica cultivar-group) cDNA... 151 4e-034
gb|CV726555.1|CV726555 14Salt--04-E06.b1 Salt treated rice ... 143 1e-031
gb|CV733801.1|CV733801 FLO--08-O01.b1 Rice flower lambda ph... 143 1e-031
gb|AU075430.1|AU075430 AU075430 Rice panicle shorter than 3... 141 4e-031
gb|AU076175.1|AU076175 AU076175 Rice cDNA from immature lea... 123 1e-025
emb|AL772422.6|CNS08CA0 Oryza sativa (japonica cultivar-gro... 88 6e-015
gb|AACV01025331.1| Oryza sativa (japonica cultivar-group) c... 88 6e-015
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 88 6e-015
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 88 6e-015
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 88 6e-015
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 88 6e-015
gb|CF279380.1|CF279380 14ETL--05-K14.g1 Rice etiolated leaf... 84 9e-014
gb|CV721234.1|CV721234 YBH--03-G07.b1 Rice before heading y... 82 3e-013
gb|AACV01025332.1| Oryza sativa (japonica cultivar-group) c... 76 2e-011
gb|AACV01025333.1| Oryza sativa (japonica cultivar-group) c... 76 2e-011
gb|C74734.1|C74734 C74734 Rice cDNA from immature leaf incl... 44 0.075
gb|AACV01013071.1| Oryza sativa (japonica cultivar-group) c... 44 0.075
dbj|AB026295.2| Oryza sativa (japonica cultivar-group) geno... 44 0.075
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 44 0.075
ref|XM_550328.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.075
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.075
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.075
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.075
dbj|AP005906.1| Oryza sativa (japonica cultivar-group) chro... 42 0.30
dbj|AP006056.3| Oryza sativa (japonica cultivar-group) geno... 42 0.30
gb|AACV01010093.1| Oryza sativa (japonica cultivar-group) c... 42 0.30
gb|AACV01013228.1| Oryza sativa (japonica cultivar-group) c... 42 0.30
ref|NT_079864.2| Oryza sativa (japonica cultivar-group) 42 0.30
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 42 0.30
dbj|AP003946.3| Oryza sativa (japonica cultivar-group) geno... 42 0.30
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromoso... 42 0.30
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.30
>gb|D15471.1|D15471 RICC0687A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0687A, mRNA sequence
Length = 475
Score = 151 bits (76), Expect = 4e-034
Identities = 136/156 (87%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 63 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 122
Query: 135 ggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttgcgggatccat 194
|||| |||||| |||| || |||||| ||||||||| ||||||||||| | ||||||
Sbjct: 123 ggaggcttgggcgttcaactacaagctgatgaaggctggtggtctgtttgttgcatccat 182
Query: 195 cttcctgatgcggaacttcggtgatctgatggccat 230
|||| ||||||| ||||| ||||| |||||||||||
Sbjct: 183 cttcgtgatgcgcaactttggtgacctgatggccat 218
>gb|AU076174.1|AU076174 AU076174 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50281_1A, mRNA sequence
Length = 461
Score = 151 bits (76), Expect = 4e-034
Identities = 136/156 (87%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 71 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 130
Query: 135 ggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttgcgggatccat 194
|||| |||||| |||| || |||||| ||||||||| ||||||||||| | ||||||
Sbjct: 131 ggaggcttgggcgttcaactacaagctgatgaaggctggtggtctgtttgttgcatccat 190
Query: 195 cttcctgatgcggaacttcggtgatctgatggccat 230
|||| ||||||| ||||| ||||| |||||||||||
Sbjct: 191 cttcgtgatgcgcaactttggtgacctgatggccat 226
>gb|AU076188.1|AU076188 AU076188 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50504_1A, mRNA sequence
Length = 346
Score = 151 bits (76), Expect = 4e-034
Identities = 136/156 (87%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 69 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 128
Query: 135 ggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttgcgggatccat 194
|||| |||||| |||| || |||||| ||||||||| ||||||||||| | ||||||
Sbjct: 129 ggaggcttgggcgttcaactacaagctgatgaaggctggtggtctgtttgttgcatccat 188
Query: 195 cttcctgatgcggaacttcggtgatctgatggccat 230
|||| ||||||| ||||| ||||| |||||||||||
Sbjct: 189 cttcgtgatgcgcaactttggtgacctgatggccat 224
>gb|AU076189.1|AU076189 AU076189 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50504_2Z, mRNA sequence
Length = 681
Score = 151 bits (76), Expect = 4e-034
Identities = 136/156 (87%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 220 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 279
Query: 135 ggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttgcgggatccat 194
|||| |||||| |||| || |||||| ||||||||| ||||||||||| | ||||||
Sbjct: 280 ggaggcttgggcgttcaactacaagctgatgaaggctggtggtctgtttgttgcatccat 339
Query: 195 cttcctgatgcggaacttcggtgatctgatggccat 230
|||| ||||||| ||||| ||||| |||||||||||
Sbjct: 340 cttcgtgatgcgcaactttggtgacctgatggccat 375
>gb|AU161755.1|AU161755 AU161755 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5291, mRNA sequence
Length = 480
Score = 151 bits (76), Expect = 4e-034
Identities = 136/156 (87%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 76 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 135
Query: 135 ggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttgcgggatccat 194
|||| |||||| |||| || |||||| ||||||||| ||||||||||| | ||||||
Sbjct: 136 ggaggcttgggcgttcaactacaagctgatgaaggctggtggtctgtttgttgcatccat 195
Query: 195 cttcctgatgcggaacttcggtgatctgatggccat 230
|||| ||||||| ||||| ||||| |||||||||||
Sbjct: 196 cttcgtgatgcgcaactttggtgacctgatggccat 231
>gb|CF279379.1|CF279379 14ETL--05-K14.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--05-K14, mRNA sequence
Length = 641
Score = 151 bits (76), Expect = 4e-034
Identities = 136/156 (87%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 86 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 145
Query: 135 ggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttgcgggatccat 194
|||| |||||| |||| || |||||| ||||||||| ||||||||||| | ||||||
Sbjct: 146 ggaggcttgggcgttcaactacaagctgatgaaggctggtggtctgtttgttgcatccat 205
Query: 195 cttcctgatgcggaacttcggtgatctgatggccat 230
|||| ||||||| ||||| ||||| |||||||||||
Sbjct: 206 cttcgtgatgcgcaactttggtgacctgatggccat 241
>gb|CF317277.1|CF317277 HD--06-O17.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--06-O17, mRNA sequence
Length = 511
Score = 151 bits (76), Expect = 4e-034
Identities = 136/156 (87%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 79 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 138
Query: 135 ggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttgcgggatccat 194
|||| |||||| |||| || |||||| ||||||||| ||||||||||| | ||||||
Sbjct: 139 ggaggcttgggcgttcaactacaagctgatgaaggctggtggtctgtttgttgcatccat 198
Query: 195 cttcctgatgcggaacttcggtgatctgatggccat 230
|||| ||||||| ||||| ||||| |||||||||||
Sbjct: 199 cttcgtgatgcgcaactttggtgacctgatggccat 234
>gb|CF317278.1|CF317278 HD--06-O17.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--06-O17, mRNA sequence
Length = 550
Score = 151 bits (76), Expect = 4e-034
Identities = 136/156 (87%)
Strand = Plus / Minus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 433 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 374
Query: 135 ggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttgcgggatccat 194
|||| |||||| |||| || |||||| ||||||||| ||||||||||| | ||||||
Sbjct: 373 ggaggcttgggcgttcaactacaagctgatgaaggctggtggtctgtttgttgcatccat 314
Query: 195 cttcctgatgcggaacttcggtgatctgatggccat 230
|||| ||||||| ||||| ||||| |||||||||||
Sbjct: 313 cttcgtgatgcgcaactttggtgacctgatggccat 278
>dbj|AK059058.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F10, full
insert sequence
Length = 468
Score = 151 bits (76), Expect = 4e-034
Identities = 136/156 (87%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 90 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 149
Query: 135 ggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttgcgggatccat 194
|||| |||||| |||| || |||||| ||||||||| ||||||||||| | ||||||
Sbjct: 150 ggaggcttgggcgttcaactacaagctgatgaaggctggtggtctgtttgttgcatccat 209
Query: 195 cttcctgatgcggaacttcggtgatctgatggccat 230
|||| ||||||| ||||| ||||| |||||||||||
Sbjct: 210 cttcgtgatgcgcaactttggtgacctgatggccat 245
>gb|CV726555.1|CV726555 14Salt--04-E06.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--04-E06, mRNA sequence
Length = 502
Score = 143 bits (72), Expect = 1e-031
Identities = 135/156 (86%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct: 123 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacta 182
Query: 135 ggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttgcgggatccat 194
|||| |||||| |||| || |||||| ||||||||| ||||||||||| | ||||||
Sbjct: 183 ggaggcttgggcgttcaactacaagctgatgaaggctggtggtctgtttgttgcatccat 242
Query: 195 cttcctgatgcggaacttcggtgatctgatggccat 230
|||| ||||||| ||||| ||||| |||||||||||
Sbjct: 243 cttcgtgatgcgcaactttggtgacctgatggccat 278
>gb|CV733801.1|CV733801 FLO--08-O01.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--08-O01,
mRNA sequence
Length = 445
Score = 143 bits (72), Expect = 1e-031
Identities = 135/156 (86%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct: 93 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacta 152
Query: 135 ggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttgcgggatccat 194
|||| |||||| |||| || |||||| ||||||||| ||||||||||| | ||||||
Sbjct: 153 ggaggcttgggcgttcaactacaagctgatgaaggctggtggtctgtttgttgcatccat 212
Query: 195 cttcctgatgcggaacttcggtgatctgatggccat 230
|||| ||||||| ||||| ||||| |||||||||||
Sbjct: 213 cttcgtgatgcgcaactttggtgacctgatggccat 248
>gb|AU075430.1|AU075430 AU075430 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30393_1A, mRNA sequence
Length = 271
Score = 141 bits (71), Expect = 4e-031
Identities = 134/156 (85%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || || ||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 64 ggcggcggcggcgncggtggagaagntcaaggcgctctgggactcgcaggtcaacgacga 123
Query: 135 ggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttgcgggatccat 194
|||| |||||| |||| || |||||| |||||||| ||||||||||| | ||||||
Sbjct: 124 ggaggcttgggcgttcaactacaagctgatgaaggctngtggtctgtttgttgcatccat 183
Query: 195 cttcctgatgcggaacttcggtgatctgatggccat 230
|||| ||||||| ||||| ||||| |||||||||||
Sbjct: 184 cttcgtgatgcgcaactttggtgacctgatggccat 219
>gb|AU076175.1|AU076175 AU076175 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50281_2Z, mRNA sequence
Length = 436
Score = 123 bits (62), Expect = 1e-025
Identities = 107/122 (87%)
Strand = Plus / Plus
Query: 109 ctctgggactcgcaggtcaacgacgaggagcagtgggcgctcaattataagctgctgaag 168
|||||||||||||||||||||||||||||| |||||| |||| || |||||| |||||
Sbjct: 9 ctctgggactcgcaggtcaacgacgaggaggcttgggcgttcaactacaagctgatgaag 68
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggcc 228
|||| ||||||||||| | |||||||||| ||||||| ||||| ||||| |||||||||
Sbjct: 69 gctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggtgacctgatggcc 128
Query: 229 at 230
||
Sbjct: 129 at 130
>emb|AL772422.6|CNS08CA0 Oryza sativa (japonica cultivar-group) chromosome 12 clone OJ1057_A02,
*** SEQUENCING IN PROGRESS ***, 4 ordered pieces
Length = 92517
Score = 87.7 bits (44), Expect = 6e-015
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 62911 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 62852
Query: 135 ggag 138
||||
Sbjct: 62851 ggag 62848
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 60900 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 60841
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 60840 gacctgatggccat 60827
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 17933 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 17874
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 17873 gacctgatggccat 17860
>gb|AACV01025331.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025331, whole
genome shotgun sequence
Length = 41635
Score = 87.7 bits (44), Expect = 6e-015
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 18784 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 18725
Query: 135 ggag 138
||||
Sbjct: 18724 ggag 18721
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 16772 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 16713
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 16712 gacctgatggccat 16699
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119
genomic scaffold, whole genome shotgun sequence
Length = 4546750
Score = 87.7 bits (44), Expect = 6e-015
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 781577 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 781636
Query: 135 ggag 138
||||
Sbjct: 781637 ggag 781640
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 814220 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 814279
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 814280 gacctgatggccat 814293
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 813095 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 813154
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 813155 gacctgatggccat 813168
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 783589 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 783648
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 783649 gacctgatggccat 783662
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 87.7 bits (44), Expect = 6e-015
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 19965223 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 19965282
Query: 135 ggag 138
||||
Sbjct: 19965283 ggag 19965286
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 19997866 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 19997925
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 19997926 gacctgatggccat 19997939
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 19996741 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 19996800
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 19996801 gacctgatggccat 19996814
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 19967235 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 19967294
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 19967295 gacctgatggccat 19967308
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 87.7 bits (44), Expect = 6e-015
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 23770954 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 23771013
Query: 135 ggag 138
||||
Sbjct: 23771014 ggag 23771017
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 23815932 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 23815991
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 23815992 gacctgatggccat 23816005
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 23772965 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 23773024
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 23773025 gacctgatggccat 23773038
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 87.7 bits (44), Expect = 6e-015
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacga 134
||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 23699153 ggcggcggcggcggcggtggagaaggtcaaggcgctctgggactcgcaggtcaacgacga 23699212
Query: 135 ggag 138
||||
Sbjct: 23699213 ggag 23699216
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 23744131 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 23744190
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 23744191 gacctgatggccat 23744204
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 23701164 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 23701223
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 23701224 gacctgatggccat 23701237
>gb|CF279380.1|CF279380 14ETL--05-K14.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--05-K14, mRNA sequence
Length = 484
Score = 83.8 bits (42), Expect = 9e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 129 cgacgaggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttgcggg 188
|||||||||| |||||| |||| || |||||| ||||||||| ||||||||||| |
Sbjct: 484 cgacgaggaggcttgggcgttcaactacaagctgatgaaggctggtggtctgtttgttgc 425
Query: 189 atccatcttcctgatgcggaacttcggtgatctgatggccat 230
|||||||||| ||||||| ||||| ||||| |||||||||||
Sbjct: 424 atccatcttcgtgatgcgcaactttggtgacctgatggccat 383
>gb|CV721234.1|CV721234 YBH--03-G07.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--03-G07, mRNA sequence
Length = 456
Score = 81.8 bits (41), Expect = 3e-013
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 142 tgggcgctcaattataagctgctgaaggctgctggtctgtttgcgggatccatcttcctg 201
|||||| |||| || |||||| ||||||||| ||||||||||| | |||||||||| ||
Sbjct: 455 tgggcgttcaactacaagctgatgaaggctggtggtctgtttgttgcatccatcttcgtg 396
Query: 202 atgcggaacttcggtgatctgatggccat 230
||||| ||||| ||||| |||||||||||
Sbjct: 395 atgcgcaactttggtgacctgatggccat 367
>gb|AACV01025332.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025332,
whole genome shotgun sequence
Length = 3276
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 542 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 483
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 482 gacctgatggccat 469
>gb|AACV01025333.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025333,
whole genome shotgun sequence
Length = 2709
Score = 75.8 bits (38), Expect = 2e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 157 aagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggt 216
|||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| |||
Sbjct: 534 aagctgatgaaggctggtggtctgtttgttgcatccatcttcgtgatgcgcaactttggt 593
Query: 217 gatctgatggccat 230
|| |||||||||||
Sbjct: 594 gacctgatggccat 607
>gb|C74734.1|C74734 C74734 Rice cDNA from immature leaf including apical meristem Oryza
sativa (japonica cultivar-group) cDNA clone E50712_1A,
mRNA sequence
Length = 307
Score = 44.1 bits (22), Expect = 0.075
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 67 ccggagatggcggcgtcgtcgg 88
||||||||||||||||||||||
Sbjct: 115 ccggagatggcggcgtcgtcgg 94
>gb|AACV01013071.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013071, whole
genome shotgun sequence
Length = 27673
Score = 44.1 bits (22), Expect = 0.075
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 ccggagatggcggcgtcgtcgg 88
||||||||||||||||||||||
Sbjct: 24550 ccggagatggcggcgtcgtcgg 24571
>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
clone:P0681F10
Length = 170371
Score = 44.1 bits (22), Expect = 0.075
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 ccggagatggcggcgtcgtcgg 88
||||||||||||||||||||||
Sbjct: 28172 ccggagatggcggcgtcgtcgg 28193
>ref|NT_079872.2| Oryza sativa (japonica cultivar-group)
Length = 1124013
Score = 44.1 bits (22), Expect = 0.075
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 ccggagatggcggcgtcgtcgg 88
||||||||||||||||||||||
Sbjct: 162018 ccggagatggcggcgtcgtcgg 162039
>ref|XM_550328.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1470
Score = 44.1 bits (22), Expect = 0.075
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 67 ccggagatggcggcgtcgtcgg 88
||||||||||||||||||||||
Sbjct: 863 ccggagatggcggcgtcgtcgg 842
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 44.1 bits (22), Expect = 0.075
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 ccggagatggcggcgtcgtcgg 88
||||||||||||||||||||||
Sbjct: 2972115 ccggagatggcggcgtcgtcgg 2972136
Score = 42.1 bits (21), Expect = 0.30
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaag 99
||||||||||||||||| |||||||
Sbjct: 4896229 ggcggcgtcgtcggcggaggagaag 4896253
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 44.1 bits (22), Expect = 0.075
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 ccggagatggcggcgtcgtcgg 88
||||||||||||||||||||||
Sbjct: 2972115 ccggagatggcggcgtcgtcgg 2972136
Score = 42.1 bits (21), Expect = 0.30
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaag 99
||||||||||||||||| |||||||
Sbjct: 4896229 ggcggcgtcgtcggcggaggagaag 4896253
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 44.1 bits (22), Expect = 0.075
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 ccggagatggcggcgtcgtcgg 88
||||||||||||||||||||||
Sbjct: 3073987 ccggagatggcggcgtcgtcgg 3074008
Score = 42.1 bits (21), Expect = 0.30
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaag 99
||||||||||||||||| |||||||
Sbjct: 5082337 ggcggcgtcgtcggcggaggagaag 5082361
>dbj|AP005906.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone B1103E01, ***
SEQUENCING IN PROGRESS ***
Length = 130748
Score = 42.1 bits (21), Expect = 0.30
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaag 99
||||||||||||||||| |||||||
Sbjct: 85276 ggcggcgtcgtcggcggaggagaag 85300
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:B1172G12
Length = 171974
Score = 42.1 bits (21), Expect = 0.30
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaag 99
||||||||||||||||| |||||||
Sbjct: 124451 ggcggcgtcgtcggcggaggagaag 124475
>gb|AACV01010093.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010093, whole
genome shotgun sequence
Length = 12147
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 68 cggagatggcggcgtcgtcggcggtggag 96
||||||||||| |||||||| ||||||||
Sbjct: 9926 cggagatggcgacgtcgtcgacggtggag 9954
>gb|AACV01013228.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013228, whole
genome shotgun sequence
Length = 94327
Score = 42.1 bits (21), Expect = 0.30
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaag 99
||||||||||||||||| |||||||
Sbjct: 23415 ggcggcgtcgtcggcggaggagaag 23439
>ref|NT_079864.2| Oryza sativa (japonica cultivar-group)
Length = 1076642
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 68 cggagatggcggcgtcgtcggcggtggag 96
||||||||||| |||||||| ||||||||
Sbjct: 433522 cggagatggcgacgtcgtcgacggtggag 433494
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 42.1 bits (21), Expect = 0.30
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaag 99
||||||||||||||||| |||||||
Sbjct: 773917 ggcggcgtcgtcggcggaggagaag 773941
>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1147_D11
Length = 138444
Score = 42.1 bits (21), Expect = 0.30
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 ggcggcgtcgtcggcggtggagaag 99
||||||||||||||||| |||||||
Sbjct: 41375 ggcggcgtcgtcggcggaggagaag 41399
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 68 cggagatggcggcgtcgtcggcggtggag 96
||||||||||| |||||||| ||||||||
Sbjct: 3366936 cggagatggcgacgtcgtcgacggtggag 3366908
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 68 cggagatggcggcgtcgtcggcggtggag 96
||||||||||| |||||||| ||||||||
Sbjct: 22511035 cggagatggcgacgtcgtcgacggtggag 22511007
>emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0065L13,
complete sequence
Length = 103039
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 68 cggagatggcggcgtcgtcggcggtggag 96
||||||||||| |||||||| ||||||||
Sbjct: 63495 cggagatggcgacgtcgtcgacggtggag 63467
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 68 cggagatggcggcgtcgtcggcggtggag 96
||||||||||| |||||||| ||||||||
Sbjct: 25486002 cggagatggcgacgtcgtcgacggtggag 25485974
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 871,906
Number of Sequences: 438736
Number of extensions: 871906
Number of successful extensions: 23521
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22890
Number of HSP's gapped (non-prelim): 631
length of query: 531
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 510
effective length of database: 2,791,206,460
effective search space: 1423515294600
effective search space used: 1423515294600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)